Multiple sequence alignment - TraesCS5A01G321100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G321100 chr5A 100.000 3473 0 0 1 3473 534062323 534065795 0.000000e+00 6414.0
1 TraesCS5A01G321100 chr5A 100.000 1515 0 0 3861 5375 534066183 534067697 0.000000e+00 2798.0
2 TraesCS5A01G321100 chr5A 91.200 750 58 4 2730 3472 534108781 534109529 0.000000e+00 1013.0
3 TraesCS5A01G321100 chr5A 82.070 1227 169 37 2282 3472 534012440 534013651 0.000000e+00 1000.0
4 TraesCS5A01G321100 chr5A 91.000 400 14 10 1176 1555 534107694 534108091 2.220000e-143 520.0
5 TraesCS5A01G321100 chr5A 99.306 144 0 1 3861 4003 515081961 515082104 5.340000e-65 259.0
6 TraesCS5A01G321100 chr5A 83.404 235 28 7 4092 4319 534109711 534109941 1.960000e-49 207.0
7 TraesCS5A01G321100 chr5D 89.239 1459 65 36 1328 2734 420626393 420627811 0.000000e+00 1740.0
8 TraesCS5A01G321100 chr5D 91.537 1217 85 14 3999 5201 420628636 420629848 0.000000e+00 1661.0
9 TraesCS5A01G321100 chr5D 90.249 882 37 13 760 1595 420624853 420625731 0.000000e+00 1107.0
10 TraesCS5A01G321100 chr5D 90.027 752 66 6 2730 3472 420627835 420628586 0.000000e+00 965.0
11 TraesCS5A01G321100 chr5D 91.974 461 37 0 3012 3472 420702922 420703382 0.000000e+00 647.0
12 TraesCS5A01G321100 chr5D 84.884 602 71 1 2290 2871 420701950 420702551 1.670000e-164 590.0
13 TraesCS5A01G321100 chr5D 87.730 489 54 4 2989 3472 420622319 420622806 2.810000e-157 566.0
14 TraesCS5A01G321100 chr5D 89.238 446 20 12 1135 1555 420701056 420701498 2.850000e-147 532.0
15 TraesCS5A01G321100 chr5D 87.136 412 53 0 2288 2699 420621704 420622115 8.150000e-128 468.0
16 TraesCS5A01G321100 chr5D 94.737 190 8 2 5187 5375 420629894 420630082 1.460000e-75 294.0
17 TraesCS5A01G321100 chr5D 85.294 272 28 6 4102 4361 420703699 420703970 2.470000e-68 270.0
18 TraesCS5A01G321100 chr5D 78.378 148 20 7 2097 2232 63515248 63515395 9.590000e-13 86.1
19 TraesCS5A01G321100 chr5B 88.489 1277 110 10 2233 3472 506767289 506768565 0.000000e+00 1509.0
20 TraesCS5A01G321100 chr5B 86.484 1317 76 40 855 2099 506766015 506767301 0.000000e+00 1352.0
21 TraesCS5A01G321100 chr5B 92.201 936 58 8 4007 4930 506768631 506769563 0.000000e+00 1310.0
22 TraesCS5A01G321100 chr5B 90.933 750 61 5 2730 3472 506780723 506781472 0.000000e+00 1002.0
23 TraesCS5A01G321100 chr5B 88.640 625 36 16 1312 1914 672818038 672817427 0.000000e+00 728.0
24 TraesCS5A01G321100 chr5B 87.935 489 53 4 2989 3472 506761015 506761502 6.040000e-159 571.0
25 TraesCS5A01G321100 chr5B 89.252 428 26 11 1135 1544 506778447 506778872 7.980000e-143 518.0
26 TraesCS5A01G321100 chr5B 88.038 418 50 0 2282 2699 506760389 506760806 3.740000e-136 496.0
27 TraesCS5A01G321100 chr5B 84.135 416 38 20 173 568 50946012 50945605 1.410000e-100 377.0
28 TraesCS5A01G321100 chr5B 83.706 313 35 11 4064 4361 506781725 506782036 1.140000e-71 281.0
29 TraesCS5A01G321100 chr5B 95.935 123 5 0 5187 5309 506769834 506769956 3.280000e-47 200.0
30 TraesCS5A01G321100 chr5B 81.560 141 15 5 2103 2232 220640721 220640581 7.360000e-19 106.0
31 TraesCS5A01G321100 chr5B 84.615 78 9 3 5301 5375 506770367 506770444 2.080000e-09 75.0
32 TraesCS5A01G321100 chr7B 88.800 625 35 16 1312 1914 648274860 648275471 0.000000e+00 734.0
33 TraesCS5A01G321100 chr7B 87.840 625 41 16 1312 1914 126787272 126787883 0.000000e+00 701.0
34 TraesCS5A01G321100 chr7B 99.301 143 0 1 3862 4003 41524884 41525026 1.920000e-64 257.0
35 TraesCS5A01G321100 chr7B 82.069 145 14 6 2100 2232 504872611 504872755 4.400000e-21 113.0
36 TraesCS5A01G321100 chr2B 88.387 620 37 16 1312 1909 331218755 331219361 0.000000e+00 713.0
37 TraesCS5A01G321100 chr7A 88.160 625 38 17 1312 1914 636230858 636230248 0.000000e+00 712.0
38 TraesCS5A01G321100 chr7A 99.306 144 0 1 3861 4003 502353874 502353731 5.340000e-65 259.0
39 TraesCS5A01G321100 chr7A 99.301 143 0 1 3862 4003 271626687 271626829 1.920000e-64 257.0
40 TraesCS5A01G321100 chr7A 99.301 143 0 1 3862 4003 539715120 539714978 1.920000e-64 257.0
41 TraesCS5A01G321100 chr3B 88.160 625 39 18 1312 1914 534166482 534167093 0.000000e+00 712.0
42 TraesCS5A01G321100 chr3B 99.306 144 0 1 3861 4003 157239201 157239058 5.340000e-65 259.0
43 TraesCS5A01G321100 chr6D 85.642 592 56 15 173 741 322580732 322580147 3.580000e-166 595.0
44 TraesCS5A01G321100 chr4B 82.963 540 65 9 175 693 100942131 100942664 3.790000e-126 462.0
45 TraesCS5A01G321100 chr6B 99.306 144 0 1 3861 4003 69457450 69457593 5.340000e-65 259.0
46 TraesCS5A01G321100 chr2A 99.306 144 0 1 3861 4003 116437023 116436880 5.340000e-65 259.0
47 TraesCS5A01G321100 chr2A 95.570 158 5 2 3863 4019 680543465 680543309 8.940000e-63 252.0
48 TraesCS5A01G321100 chr2A 80.986 142 16 5 2102 2232 278912166 278912307 9.520000e-18 102.0
49 TraesCS5A01G321100 chr4D 90.083 121 11 1 173 293 499485035 499484916 7.210000e-34 156.0
50 TraesCS5A01G321100 chr4A 83.333 132 17 4 2103 2232 109430586 109430458 3.400000e-22 117.0
51 TraesCS5A01G321100 chr3D 80.272 147 18 5 2097 2232 100459763 100459909 3.430000e-17 100.0
52 TraesCS5A01G321100 chr3D 95.556 45 2 0 2103 2147 536666642 536666598 7.470000e-09 73.1
53 TraesCS5A01G321100 chr2D 93.878 49 2 1 2098 2146 542190187 542190234 7.470000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G321100 chr5A 534062323 534067697 5374 False 4606.000000 6414 100.000000 1 5375 2 chr5A.!!$F3 5374
1 TraesCS5A01G321100 chr5A 534012440 534013651 1211 False 1000.000000 1000 82.070000 2282 3472 1 chr5A.!!$F2 1190
2 TraesCS5A01G321100 chr5A 534107694 534109941 2247 False 580.000000 1013 88.534667 1176 4319 3 chr5A.!!$F4 3143
3 TraesCS5A01G321100 chr5D 420621704 420630082 8378 False 971.571429 1740 90.093571 760 5375 7 chr5D.!!$F2 4615
4 TraesCS5A01G321100 chr5D 420701056 420703970 2914 False 509.750000 647 87.847500 1135 4361 4 chr5D.!!$F3 3226
5 TraesCS5A01G321100 chr5B 506766015 506770444 4429 False 889.200000 1509 89.544800 855 5375 5 chr5B.!!$F2 4520
6 TraesCS5A01G321100 chr5B 672817427 672818038 611 True 728.000000 728 88.640000 1312 1914 1 chr5B.!!$R3 602
7 TraesCS5A01G321100 chr5B 506778447 506782036 3589 False 600.333333 1002 87.963667 1135 4361 3 chr5B.!!$F3 3226
8 TraesCS5A01G321100 chr5B 506760389 506761502 1113 False 533.500000 571 87.986500 2282 3472 2 chr5B.!!$F1 1190
9 TraesCS5A01G321100 chr7B 648274860 648275471 611 False 734.000000 734 88.800000 1312 1914 1 chr7B.!!$F4 602
10 TraesCS5A01G321100 chr7B 126787272 126787883 611 False 701.000000 701 87.840000 1312 1914 1 chr7B.!!$F2 602
11 TraesCS5A01G321100 chr2B 331218755 331219361 606 False 713.000000 713 88.387000 1312 1909 1 chr2B.!!$F1 597
12 TraesCS5A01G321100 chr7A 636230248 636230858 610 True 712.000000 712 88.160000 1312 1914 1 chr7A.!!$R3 602
13 TraesCS5A01G321100 chr3B 534166482 534167093 611 False 712.000000 712 88.160000 1312 1914 1 chr3B.!!$F1 602
14 TraesCS5A01G321100 chr6D 322580147 322580732 585 True 595.000000 595 85.642000 173 741 1 chr6D.!!$R1 568
15 TraesCS5A01G321100 chr4B 100942131 100942664 533 False 462.000000 462 82.963000 175 693 1 chr4B.!!$F1 518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
88 89 0.179000 GGTCATCCATGGCGAAGAGT 59.821 55.0 6.96 0.00 31.93 3.24 F
861 3259 0.179153 GCTGCGCCATTTCTTCCTTC 60.179 55.0 4.18 0.00 0.00 3.46 F
2155 6605 0.034089 GGGTCCTGGGATCACTTTGG 60.034 60.0 0.00 0.00 0.00 3.28 F
2195 6645 0.037326 CCTGCGTTCTACAAGAGGCA 60.037 55.0 5.14 5.14 35.31 4.75 F
3941 8779 0.177141 TGGGTCTATTGTACGCAGCC 59.823 55.0 0.00 0.00 35.18 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1532 4000 0.325110 CAGAGCAGGGAAGAGGAGGA 60.325 60.000 0.0 0.0 0.00 3.71 R
2166 6616 0.182775 AGAACGCAGGGAAAGGTTGT 59.817 50.000 0.0 0.0 0.00 3.32 R
3978 8816 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.0 0.0 0.00 2.69 R
3979 8817 1.676968 CCATGAGGTCACGGGTTCA 59.323 57.895 0.0 0.0 0.00 3.18 R
4773 9943 0.678684 TTTAAACCCTAGCCGCCAGC 60.679 55.000 0.0 0.0 44.25 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.052082 CCATGGGCATCGATCCGC 61.052 66.667 2.85 0.00 0.00 5.54
23 24 4.585526 GCATCGATCCGCCGGACA 62.586 66.667 8.62 0.00 32.98 4.02
24 25 2.355126 CATCGATCCGCCGGACAG 60.355 66.667 8.62 5.53 32.98 3.51
25 26 2.518587 ATCGATCCGCCGGACAGA 60.519 61.111 8.62 11.78 32.98 3.41
26 27 2.846652 ATCGATCCGCCGGACAGAC 61.847 63.158 8.62 0.00 32.98 3.51
27 28 3.822192 CGATCCGCCGGACAGACA 61.822 66.667 8.62 0.00 32.98 3.41
28 29 2.815308 GATCCGCCGGACAGACAT 59.185 61.111 8.62 0.00 32.98 3.06
30 31 2.016393 GATCCGCCGGACAGACATGA 62.016 60.000 8.62 0.00 32.98 3.07
31 32 2.298158 ATCCGCCGGACAGACATGAC 62.298 60.000 8.62 0.00 32.98 3.06
32 33 2.509336 CGCCGGACAGACATGACC 60.509 66.667 5.05 0.00 37.83 4.02
33 34 2.662596 GCCGGACAGACATGACCA 59.337 61.111 5.05 0.00 40.79 4.02
34 35 1.741770 GCCGGACAGACATGACCAC 60.742 63.158 5.05 0.00 40.79 4.16
45 46 0.182061 CATGACCACATGGGGGAGAG 59.818 60.000 20.68 1.22 46.95 3.20
46 47 1.639635 ATGACCACATGGGGGAGAGC 61.640 60.000 20.68 2.49 42.91 4.09
47 48 2.204136 ACCACATGGGGGAGAGCA 60.204 61.111 20.68 0.00 42.91 4.26
48 49 2.273449 CCACATGGGGGAGAGCAC 59.727 66.667 5.91 0.00 0.00 4.40
50 51 2.284625 ACATGGGGGAGAGCACGA 60.285 61.111 0.00 0.00 0.00 4.35
53 54 2.362369 ATGGGGGAGAGCACGACAG 61.362 63.158 0.00 0.00 0.00 3.51
54 55 4.459089 GGGGGAGAGCACGACAGC 62.459 72.222 0.00 0.00 0.00 4.40
55 56 4.459089 GGGGAGAGCACGACAGCC 62.459 72.222 0.00 0.00 34.23 4.85
56 57 3.695606 GGGAGAGCACGACAGCCA 61.696 66.667 0.00 0.00 34.23 4.75
57 58 2.581354 GGAGAGCACGACAGCCAT 59.419 61.111 0.00 0.00 34.23 4.40
58 59 1.520342 GGAGAGCACGACAGCCATC 60.520 63.158 0.00 0.00 34.23 3.51
61 62 3.356639 GAGCACGACAGCCATCGGA 62.357 63.158 11.48 0.00 46.56 4.55
62 63 2.887568 GCACGACAGCCATCGGAG 60.888 66.667 11.48 5.18 46.56 4.63
63 64 2.202797 CACGACAGCCATCGGAGG 60.203 66.667 11.48 0.00 46.56 4.30
65 66 3.147595 CGACAGCCATCGGAGGGA 61.148 66.667 13.78 0.00 38.47 4.20
66 67 2.721167 CGACAGCCATCGGAGGGAA 61.721 63.158 13.78 0.00 38.47 3.97
67 68 1.153349 GACAGCCATCGGAGGGAAC 60.153 63.158 13.78 0.00 0.00 3.62
80 81 1.152963 GGGAACCGGTCATCCATGG 60.153 63.158 23.67 4.97 40.86 3.66
82 83 2.124736 AACCGGTCATCCATGGCG 60.125 61.111 8.04 4.09 31.93 5.69
83 84 2.587322 GAACCGGTCATCCATGGCGA 62.587 60.000 8.04 2.84 31.93 5.54
84 85 2.189257 CCGGTCATCCATGGCGAA 59.811 61.111 6.96 0.00 31.93 4.70
86 87 1.143838 CGGTCATCCATGGCGAAGA 59.856 57.895 6.96 0.00 31.93 2.87
87 88 0.877649 CGGTCATCCATGGCGAAGAG 60.878 60.000 6.96 0.00 31.93 2.85
88 89 0.179000 GGTCATCCATGGCGAAGAGT 59.821 55.000 6.96 0.00 31.93 3.24
89 90 1.576356 GTCATCCATGGCGAAGAGTC 58.424 55.000 6.96 0.00 0.00 3.36
90 91 1.134699 GTCATCCATGGCGAAGAGTCA 60.135 52.381 6.96 0.00 39.68 3.41
91 92 1.134699 TCATCCATGGCGAAGAGTCAC 60.135 52.381 6.96 0.00 37.24 3.67
92 93 0.179000 ATCCATGGCGAAGAGTCACC 59.821 55.000 6.96 0.00 37.24 4.02
95 96 1.021390 CATGGCGAAGAGTCACCACC 61.021 60.000 0.00 0.00 38.79 4.61
96 97 2.432628 GGCGAAGAGTCACCACCG 60.433 66.667 0.00 0.00 0.00 4.94
97 98 2.432628 GCGAAGAGTCACCACCGG 60.433 66.667 0.00 0.00 0.00 5.28
98 99 2.927580 GCGAAGAGTCACCACCGGA 61.928 63.158 9.46 0.00 0.00 5.14
99 100 1.663739 CGAAGAGTCACCACCGGAA 59.336 57.895 9.46 0.00 0.00 4.30
100 101 0.388649 CGAAGAGTCACCACCGGAAG 60.389 60.000 9.46 0.00 0.00 3.46
119 120 4.473520 AGAATCCGGCGCCACCAG 62.474 66.667 28.98 12.00 39.03 4.00
130 131 2.520458 CCACCAGGAGCACCCAAA 59.480 61.111 0.00 0.00 36.89 3.28
131 132 1.604593 CCACCAGGAGCACCCAAAG 60.605 63.158 0.00 0.00 36.89 2.77
132 133 2.116125 ACCAGGAGCACCCAAAGC 59.884 61.111 0.00 0.00 37.41 3.51
133 134 2.115910 CCAGGAGCACCCAAAGCA 59.884 61.111 0.00 0.00 37.41 3.91
134 135 2.270986 CCAGGAGCACCCAAAGCAC 61.271 63.158 0.00 0.00 37.41 4.40
135 136 1.529010 CAGGAGCACCCAAAGCACA 60.529 57.895 0.00 0.00 37.41 4.57
136 137 1.529244 AGGAGCACCCAAAGCACAC 60.529 57.895 0.00 0.00 37.41 3.82
137 138 1.827789 GGAGCACCCAAAGCACACA 60.828 57.895 0.00 0.00 34.14 3.72
138 139 1.391157 GGAGCACCCAAAGCACACAA 61.391 55.000 0.00 0.00 34.14 3.33
142 143 0.528249 CACCCAAAGCACACAACTGC 60.528 55.000 0.00 0.00 37.44 4.40
144 145 1.394266 CCCAAAGCACACAACTGCCT 61.394 55.000 0.00 0.00 37.96 4.75
145 146 0.461135 CCAAAGCACACAACTGCCTT 59.539 50.000 0.00 0.00 37.96 4.35
146 147 1.536709 CCAAAGCACACAACTGCCTTC 60.537 52.381 0.00 0.00 37.96 3.46
147 148 0.746659 AAAGCACACAACTGCCTTCC 59.253 50.000 0.00 0.00 37.96 3.46
148 149 1.109323 AAGCACACAACTGCCTTCCC 61.109 55.000 0.00 0.00 37.96 3.97
149 150 1.529244 GCACACAACTGCCTTCCCT 60.529 57.895 0.00 0.00 0.00 4.20
150 151 1.518903 GCACACAACTGCCTTCCCTC 61.519 60.000 0.00 0.00 0.00 4.30
151 152 0.890996 CACACAACTGCCTTCCCTCC 60.891 60.000 0.00 0.00 0.00 4.30
152 153 1.062488 ACACAACTGCCTTCCCTCCT 61.062 55.000 0.00 0.00 0.00 3.69
153 154 0.322008 CACAACTGCCTTCCCTCCTC 60.322 60.000 0.00 0.00 0.00 3.71
154 155 1.301293 CAACTGCCTTCCCTCCTCC 59.699 63.158 0.00 0.00 0.00 4.30
155 156 1.925972 AACTGCCTTCCCTCCTCCC 60.926 63.158 0.00 0.00 0.00 4.30
156 157 3.093172 CTGCCTTCCCTCCTCCCC 61.093 72.222 0.00 0.00 0.00 4.81
158 159 3.412408 GCCTTCCCTCCTCCCCAC 61.412 72.222 0.00 0.00 0.00 4.61
159 160 2.124996 CCTTCCCTCCTCCCCACA 59.875 66.667 0.00 0.00 0.00 4.17
160 161 1.997874 CCTTCCCTCCTCCCCACAG 60.998 68.421 0.00 0.00 0.00 3.66
161 162 1.081092 CTTCCCTCCTCCCCACAGA 59.919 63.158 0.00 0.00 0.00 3.41
164 165 2.689034 CCTCCTCCCCACAGACCC 60.689 72.222 0.00 0.00 0.00 4.46
165 166 2.122729 CTCCTCCCCACAGACCCA 59.877 66.667 0.00 0.00 0.00 4.51
166 167 1.538876 CTCCTCCCCACAGACCCAA 60.539 63.158 0.00 0.00 0.00 4.12
167 168 1.073319 TCCTCCCCACAGACCCAAA 60.073 57.895 0.00 0.00 0.00 3.28
168 169 0.699577 TCCTCCCCACAGACCCAAAA 60.700 55.000 0.00 0.00 0.00 2.44
169 170 0.539669 CCTCCCCACAGACCCAAAAC 60.540 60.000 0.00 0.00 0.00 2.43
170 171 0.889186 CTCCCCACAGACCCAAAACG 60.889 60.000 0.00 0.00 0.00 3.60
171 172 1.901464 CCCCACAGACCCAAAACGG 60.901 63.158 0.00 0.00 0.00 4.44
251 253 0.613777 GGGGAGATGAACCTCAACGT 59.386 55.000 0.00 0.00 34.94 3.99
252 254 1.003233 GGGGAGATGAACCTCAACGTT 59.997 52.381 0.00 0.00 34.94 3.99
281 283 1.462670 GAAGGAGAGCAACGCTTGAAG 59.537 52.381 2.51 0.00 39.88 3.02
343 345 1.151810 ACCCCACTCCACATCCACT 60.152 57.895 0.00 0.00 0.00 4.00
363 365 0.321564 CAGCCAACAACCAGATCGGA 60.322 55.000 10.05 0.00 38.63 4.55
420 422 1.819288 GGACACCGTCTTCAGATCTGA 59.181 52.381 21.67 21.67 37.91 3.27
422 424 2.229062 GACACCGTCTTCAGATCTGACA 59.771 50.000 25.07 11.93 39.66 3.58
423 425 2.029828 ACACCGTCTTCAGATCTGACAC 60.030 50.000 25.07 21.15 39.66 3.67
510 512 4.344865 GAAGGCGGCCCAACTCCA 62.345 66.667 17.02 0.00 0.00 3.86
511 513 3.860930 GAAGGCGGCCCAACTCCAA 62.861 63.158 17.02 0.00 0.00 3.53
512 514 4.660938 AGGCGGCCCAACTCCAAC 62.661 66.667 17.02 0.00 0.00 3.77
559 562 3.166434 CCCACACCACCAAGGCTA 58.834 61.111 0.00 0.00 43.14 3.93
581 584 2.732619 CCTGGAACCCTAGGTCCGC 61.733 68.421 8.29 0.00 33.12 5.54
637 640 4.082523 CCTCACCGGCGTCCACAT 62.083 66.667 6.01 0.00 0.00 3.21
638 641 2.815211 CTCACCGGCGTCCACATG 60.815 66.667 6.01 0.00 0.00 3.21
639 642 4.386951 TCACCGGCGTCCACATGG 62.387 66.667 6.01 0.00 0.00 3.66
640 643 4.386951 CACCGGCGTCCACATGGA 62.387 66.667 6.01 0.00 43.08 3.41
641 644 4.082523 ACCGGCGTCCACATGGAG 62.083 66.667 6.01 0.00 46.49 3.86
644 647 2.390599 CGGCGTCCACATGGAGTTG 61.391 63.158 0.00 0.00 46.49 3.16
645 648 2.690778 GGCGTCCACATGGAGTTGC 61.691 63.158 0.00 6.05 46.49 4.17
646 649 1.672356 GCGTCCACATGGAGTTGCT 60.672 57.895 0.00 0.00 46.49 3.91
647 650 0.391130 GCGTCCACATGGAGTTGCTA 60.391 55.000 0.00 0.00 46.49 3.49
649 652 1.740380 CGTCCACATGGAGTTGCTAGG 60.740 57.143 0.00 0.00 46.49 3.02
650 653 0.911769 TCCACATGGAGTTGCTAGGG 59.088 55.000 0.00 0.00 39.78 3.53
651 654 0.749454 CCACATGGAGTTGCTAGGGC 60.749 60.000 0.00 0.00 37.39 5.19
652 655 0.254178 CACATGGAGTTGCTAGGGCT 59.746 55.000 0.00 0.00 39.59 5.19
654 657 1.486726 ACATGGAGTTGCTAGGGCTAC 59.513 52.381 0.00 0.00 42.76 3.58
655 658 1.132500 ATGGAGTTGCTAGGGCTACC 58.868 55.000 0.00 0.00 43.28 3.18
657 660 0.753867 GGAGTTGCTAGGGCTACCTC 59.246 60.000 0.00 0.00 46.95 3.85
658 661 0.753867 GAGTTGCTAGGGCTACCTCC 59.246 60.000 0.00 0.00 46.95 4.30
660 663 1.760875 TTGCTAGGGCTACCTCCGG 60.761 63.158 0.00 0.00 46.95 5.14
661 664 3.617735 GCTAGGGCTACCTCCGGC 61.618 72.222 0.00 0.00 46.95 6.13
662 665 3.296054 CTAGGGCTACCTCCGGCG 61.296 72.222 0.00 0.00 46.95 6.46
663 666 4.908487 TAGGGCTACCTCCGGCGG 62.908 72.222 22.51 22.51 46.95 6.13
677 680 2.747855 GCGGTGGCAAGGGAAGAG 60.748 66.667 0.00 0.00 39.62 2.85
679 682 2.361737 GGTGGCAAGGGAAGAGGC 60.362 66.667 0.00 0.00 0.00 4.70
680 683 2.747855 GTGGCAAGGGAAGAGGCG 60.748 66.667 0.00 0.00 0.00 5.52
681 684 4.033776 TGGCAAGGGAAGAGGCGG 62.034 66.667 0.00 0.00 0.00 6.13
682 685 3.717294 GGCAAGGGAAGAGGCGGA 61.717 66.667 0.00 0.00 0.00 5.54
683 686 2.351276 GCAAGGGAAGAGGCGGAA 59.649 61.111 0.00 0.00 0.00 4.30
684 687 1.746991 GCAAGGGAAGAGGCGGAAG 60.747 63.158 0.00 0.00 0.00 3.46
685 688 1.078143 CAAGGGAAGAGGCGGAAGG 60.078 63.158 0.00 0.00 0.00 3.46
687 690 3.798511 GGGAAGAGGCGGAAGGGG 61.799 72.222 0.00 0.00 0.00 4.79
688 691 3.798511 GGAAGAGGCGGAAGGGGG 61.799 72.222 0.00 0.00 0.00 5.40
707 710 3.641454 GGGATCTGGATCGCCCCC 61.641 72.222 14.21 3.51 42.75 5.40
708 711 4.008933 GGATCTGGATCGCCCCCG 62.009 72.222 4.75 0.00 38.69 5.73
732 735 3.023116 CCTGGGGGATGCAAGGGA 61.023 66.667 0.00 0.00 33.58 4.20
734 737 3.023116 TGGGGGATGCAAGGGAGG 61.023 66.667 0.00 0.00 0.00 4.30
736 739 4.883354 GGGGATGCAAGGGAGGCG 62.883 72.222 0.00 0.00 0.00 5.52
737 740 4.883354 GGGATGCAAGGGAGGCGG 62.883 72.222 0.00 0.00 0.00 6.13
739 742 4.883354 GATGCAAGGGAGGCGGGG 62.883 72.222 0.00 0.00 0.00 5.73
748 751 3.930012 GAGGCGGGGGAGGATTCG 61.930 72.222 0.00 0.00 0.00 3.34
753 756 3.242291 GGGGGAGGATTCGCGGAT 61.242 66.667 6.13 1.05 37.15 4.18
754 757 2.031163 GGGGAGGATTCGCGGATG 59.969 66.667 3.53 0.00 37.15 3.51
755 758 2.808206 GGGGAGGATTCGCGGATGT 61.808 63.158 3.53 0.00 37.15 3.06
758 761 0.938008 GGAGGATTCGCGGATGTTTC 59.062 55.000 3.53 0.00 0.00 2.78
759 762 1.651987 GAGGATTCGCGGATGTTTCA 58.348 50.000 3.53 0.00 0.00 2.69
760 763 1.594862 GAGGATTCGCGGATGTTTCAG 59.405 52.381 3.53 0.00 0.00 3.02
761 764 1.207089 AGGATTCGCGGATGTTTCAGA 59.793 47.619 3.53 0.00 0.00 3.27
762 765 2.158900 AGGATTCGCGGATGTTTCAGAT 60.159 45.455 3.53 0.00 0.00 2.90
764 767 3.807622 GGATTCGCGGATGTTTCAGATAA 59.192 43.478 3.53 0.00 0.00 1.75
765 768 4.272504 GGATTCGCGGATGTTTCAGATAAA 59.727 41.667 3.53 0.00 0.00 1.40
766 769 5.220777 GGATTCGCGGATGTTTCAGATAAAA 60.221 40.000 3.53 0.00 0.00 1.52
768 771 4.250464 TCGCGGATGTTTCAGATAAAACT 58.750 39.130 6.13 0.00 39.39 2.66
772 3166 6.682863 CGCGGATGTTTCAGATAAAACTTTAG 59.317 38.462 0.00 0.00 39.39 1.85
774 3168 8.662141 GCGGATGTTTCAGATAAAACTTTAGTA 58.338 33.333 1.73 0.00 39.39 1.82
796 3190 8.958119 AGTACTGAATTAGCAAATCCGATTAA 57.042 30.769 0.00 0.00 0.00 1.40
797 3191 9.391006 AGTACTGAATTAGCAAATCCGATTAAA 57.609 29.630 0.00 0.00 0.00 1.52
811 3209 7.867160 ATCCGATTAAAATAGAAGTAGGGGA 57.133 36.000 0.00 0.00 0.00 4.81
816 3214 7.715686 CGATTAAAATAGAAGTAGGGGAAAGCT 59.284 37.037 0.00 0.00 0.00 3.74
825 3223 3.459598 AGTAGGGGAAAGCTGAATATGCA 59.540 43.478 0.00 0.00 0.00 3.96
847 3245 2.072298 GGCAGGATAGAATAAGCTGCG 58.928 52.381 0.00 0.00 37.24 5.18
849 3247 2.072298 CAGGATAGAATAAGCTGCGCC 58.928 52.381 4.18 0.00 0.00 6.53
850 3248 1.694150 AGGATAGAATAAGCTGCGCCA 59.306 47.619 4.18 0.00 0.00 5.69
853 3251 3.503748 GGATAGAATAAGCTGCGCCATTT 59.496 43.478 4.18 0.00 0.00 2.32
854 3252 4.378874 GGATAGAATAAGCTGCGCCATTTC 60.379 45.833 4.18 0.00 0.00 2.17
856 3254 3.019564 AGAATAAGCTGCGCCATTTCTT 58.980 40.909 4.18 3.48 0.00 2.52
858 3256 1.094785 TAAGCTGCGCCATTTCTTCC 58.905 50.000 4.18 0.00 0.00 3.46
861 3259 0.179153 GCTGCGCCATTTCTTCCTTC 60.179 55.000 4.18 0.00 0.00 3.46
862 3260 0.453390 CTGCGCCATTTCTTCCTTCC 59.547 55.000 4.18 0.00 0.00 3.46
906 3325 1.306654 AACGGGCTCCATCCCTGTA 60.307 57.895 0.00 0.00 44.30 2.74
907 3326 1.623542 AACGGGCTCCATCCCTGTAC 61.624 60.000 0.00 0.00 44.30 2.90
908 3327 2.822399 GGGCTCCATCCCTGTACG 59.178 66.667 0.00 0.00 43.13 3.67
912 3331 1.065928 CTCCATCCCTGTACGACGC 59.934 63.158 0.00 0.00 0.00 5.19
1558 4033 3.452474 CTCTTCCCTGCTCTGTTATTCG 58.548 50.000 0.00 0.00 0.00 3.34
1568 4043 7.329717 CCCTGCTCTGTTATTCGATTAATACTC 59.670 40.741 3.30 0.00 29.54 2.59
1595 4070 3.319689 TGACTAGTGATTCGTTGGTGTCA 59.680 43.478 0.00 0.00 0.00 3.58
1596 4071 4.021456 TGACTAGTGATTCGTTGGTGTCAT 60.021 41.667 0.00 0.00 0.00 3.06
1597 4072 4.245660 ACTAGTGATTCGTTGGTGTCATG 58.754 43.478 0.00 0.00 0.00 3.07
1598 4073 1.806542 AGTGATTCGTTGGTGTCATGC 59.193 47.619 0.00 0.00 0.00 4.06
1599 4074 1.535028 GTGATTCGTTGGTGTCATGCA 59.465 47.619 0.00 0.00 0.00 3.96
1603 4078 1.164411 TCGTTGGTGTCATGCATTCC 58.836 50.000 0.00 0.00 0.00 3.01
1605 4080 1.135603 CGTTGGTGTCATGCATTCCTG 60.136 52.381 0.00 0.00 0.00 3.86
1606 4081 1.203052 GTTGGTGTCATGCATTCCTGG 59.797 52.381 0.00 0.00 0.00 4.45
1607 4082 0.405198 TGGTGTCATGCATTCCTGGT 59.595 50.000 0.00 0.00 0.00 4.00
1608 4083 1.203038 TGGTGTCATGCATTCCTGGTT 60.203 47.619 0.00 0.00 0.00 3.67
1609 4084 2.040947 TGGTGTCATGCATTCCTGGTTA 59.959 45.455 0.00 0.00 0.00 2.85
1610 4085 3.088532 GGTGTCATGCATTCCTGGTTAA 58.911 45.455 0.00 0.00 0.00 2.01
1611 4086 3.701040 GGTGTCATGCATTCCTGGTTAAT 59.299 43.478 0.00 0.00 0.00 1.40
1617 4116 4.248174 TGCATTCCTGGTTAATCCATGA 57.752 40.909 0.00 0.00 46.12 3.07
1618 4117 4.209538 TGCATTCCTGGTTAATCCATGAG 58.790 43.478 0.00 0.00 46.12 2.90
1685 5117 0.890683 CACTGAAATTGGGTCTGGGC 59.109 55.000 0.00 0.00 0.00 5.36
1686 5118 0.779997 ACTGAAATTGGGTCTGGGCT 59.220 50.000 0.00 0.00 0.00 5.19
1687 5119 1.180029 CTGAAATTGGGTCTGGGCTG 58.820 55.000 0.00 0.00 0.00 4.85
1760 5213 4.397417 CCAGGACCAAGATGAAGATGAAAC 59.603 45.833 0.00 0.00 0.00 2.78
1761 5214 5.251764 CAGGACCAAGATGAAGATGAAACT 58.748 41.667 0.00 0.00 0.00 2.66
1775 5228 6.981762 AGATGAAACTGTCTGATTGATCAC 57.018 37.500 0.00 0.00 32.50 3.06
1923 5401 2.749280 GGCTGCAAATTTAGCAACCT 57.251 45.000 19.28 0.00 43.22 3.50
1961 5439 8.740207 ATCTTTTCAGAAACACCGAGATTACGG 61.740 40.741 0.00 0.00 44.79 4.02
1976 5464 0.597377 TACGGCATGTGCTAGCGATG 60.597 55.000 18.04 18.04 41.70 3.84
2057 5976 2.907458 AGCAGGGCCATCTTAAAAGT 57.093 45.000 6.18 0.00 0.00 2.66
2058 5977 3.175438 AGCAGGGCCATCTTAAAAGTT 57.825 42.857 6.18 0.00 0.00 2.66
2059 5978 4.316025 AGCAGGGCCATCTTAAAAGTTA 57.684 40.909 6.18 0.00 0.00 2.24
2060 5979 4.672899 AGCAGGGCCATCTTAAAAGTTAA 58.327 39.130 6.18 0.00 0.00 2.01
2061 5980 5.083821 AGCAGGGCCATCTTAAAAGTTAAA 58.916 37.500 6.18 0.00 0.00 1.52
2062 5981 5.542251 AGCAGGGCCATCTTAAAAGTTAAAA 59.458 36.000 6.18 0.00 0.00 1.52
2063 5982 5.869344 GCAGGGCCATCTTAAAAGTTAAAAG 59.131 40.000 6.18 0.00 0.00 2.27
2069 5988 9.542462 GGCCATCTTAAAAGTTAAAAGAAAAGT 57.458 29.630 0.00 0.00 33.26 2.66
2099 6540 8.267183 TCCTCTGAAAAATTGTGCATAGATAGA 58.733 33.333 0.00 0.00 0.00 1.98
2109 6550 1.339535 GCATAGATAGAAGGGGCAGCC 60.340 57.143 1.26 1.26 0.00 4.85
2142 6583 3.771160 CCGCTTGCGTAGGGTCCT 61.771 66.667 13.97 0.00 35.13 3.85
2147 6588 1.306654 TTGCGTAGGGTCCTGGGAT 60.307 57.895 0.00 0.00 0.00 3.85
2155 6605 0.034089 GGGTCCTGGGATCACTTTGG 60.034 60.000 0.00 0.00 0.00 3.28
2165 6615 4.825085 TGGGATCACTTTGGTCTTTTGTAC 59.175 41.667 0.00 0.00 0.00 2.90
2166 6616 4.825085 GGGATCACTTTGGTCTTTTGTACA 59.175 41.667 0.00 0.00 0.00 2.90
2171 6621 5.099575 CACTTTGGTCTTTTGTACACAACC 58.900 41.667 0.00 1.59 35.28 3.77
2181 6631 0.872388 GTACACAACCTTTCCCTGCG 59.128 55.000 0.00 0.00 0.00 5.18
2186 6636 1.418637 ACAACCTTTCCCTGCGTTCTA 59.581 47.619 0.00 0.00 0.00 2.10
2195 6645 0.037326 CCTGCGTTCTACAAGAGGCA 60.037 55.000 5.14 5.14 35.31 4.75
2201 6651 3.654414 CGTTCTACAAGAGGCAGTTTCT 58.346 45.455 0.00 0.00 0.00 2.52
2212 6662 3.997681 GAGGCAGTTTCTAGGACTCAAAC 59.002 47.826 0.00 0.00 0.00 2.93
2214 6664 3.075148 GCAGTTTCTAGGACTCAAACCC 58.925 50.000 0.00 0.00 31.50 4.11
2223 6673 0.680061 GACTCAAACCCGTGACCTCT 59.320 55.000 0.00 0.00 0.00 3.69
2236 6686 3.329300 ACCTCTTGGTCACATGTGC 57.671 52.632 21.38 15.29 44.78 4.57
2237 6687 0.473755 ACCTCTTGGTCACATGTGCA 59.526 50.000 21.38 11.38 44.78 4.57
2238 6688 1.074405 ACCTCTTGGTCACATGTGCAT 59.926 47.619 21.38 0.00 44.78 3.96
2239 6689 2.305635 ACCTCTTGGTCACATGTGCATA 59.694 45.455 21.38 6.32 44.78 3.14
2240 6690 2.941064 CCTCTTGGTCACATGTGCATAG 59.059 50.000 21.38 14.20 0.00 2.23
2241 6691 3.369787 CCTCTTGGTCACATGTGCATAGA 60.370 47.826 21.38 17.18 0.00 1.98
2242 6692 4.449131 CTCTTGGTCACATGTGCATAGAT 58.551 43.478 21.38 0.00 0.00 1.98
2243 6693 5.453762 CCTCTTGGTCACATGTGCATAGATA 60.454 44.000 21.38 0.00 0.00 1.98
2244 6694 5.604565 TCTTGGTCACATGTGCATAGATAG 58.395 41.667 21.38 10.88 0.00 2.08
2245 6695 3.732212 TGGTCACATGTGCATAGATAGC 58.268 45.455 21.38 11.77 0.00 2.97
2246 6696 3.134442 TGGTCACATGTGCATAGATAGCA 59.866 43.478 21.38 14.20 40.19 3.49
2247 6697 4.202388 TGGTCACATGTGCATAGATAGCAT 60.202 41.667 21.38 0.00 44.79 3.79
2248 6698 4.153655 GGTCACATGTGCATAGATAGCATG 59.846 45.833 21.38 9.05 44.79 4.06
2249 6699 4.153655 GTCACATGTGCATAGATAGCATGG 59.846 45.833 21.38 5.29 44.79 3.66
2250 6700 4.070009 CACATGTGCATAGATAGCATGGT 58.930 43.478 13.94 1.62 44.79 3.55
2251 6701 4.517832 CACATGTGCATAGATAGCATGGTT 59.482 41.667 13.94 0.00 44.79 3.67
2252 6702 4.758674 ACATGTGCATAGATAGCATGGTTC 59.241 41.667 1.12 0.77 44.79 3.62
2253 6703 4.420522 TGTGCATAGATAGCATGGTTCA 57.579 40.909 1.12 0.00 44.79 3.18
2254 6704 4.779696 TGTGCATAGATAGCATGGTTCAA 58.220 39.130 1.12 0.00 44.79 2.69
2255 6705 5.192176 TGTGCATAGATAGCATGGTTCAAA 58.808 37.500 1.12 0.00 44.79 2.69
2256 6706 5.297527 TGTGCATAGATAGCATGGTTCAAAG 59.702 40.000 1.12 0.00 44.79 2.77
2548 6998 0.184933 TGGAAGTTGGTGGGGTTGAG 59.815 55.000 0.00 0.00 0.00 3.02
2890 7486 7.482654 TGATATATCAGTTTGCTGTTACTGC 57.517 36.000 11.49 7.29 43.05 4.40
2903 7500 4.495422 CTGTTACTGCAGTTCCGAATACT 58.505 43.478 27.06 0.00 0.00 2.12
3008 7634 5.163513 GGTAATCTCATTTTGTTGGTGCTG 58.836 41.667 0.00 0.00 0.00 4.41
3018 7770 5.369685 TTTGTTGGTGCTGTGTACATATG 57.630 39.130 0.00 0.00 0.00 1.78
3342 8180 0.606944 GTGGGTTCGGTTACCATGCA 60.607 55.000 1.13 0.00 40.09 3.96
3404 8242 2.202676 GCAGCTCGAGAAGACGGG 60.203 66.667 18.75 0.00 36.78 5.28
3472 8310 3.871463 GCTTGATGATCAACACCTCACCT 60.871 47.826 4.98 0.00 32.21 4.00
3880 8718 2.045045 GGCAGCCCAGTGCATGTA 60.045 61.111 0.00 0.00 45.93 2.29
3881 8719 2.117156 GGCAGCCCAGTGCATGTAG 61.117 63.158 0.00 0.00 45.93 2.74
3882 8720 2.768492 GCAGCCCAGTGCATGTAGC 61.768 63.158 0.00 0.00 43.41 3.58
3883 8721 1.077930 CAGCCCAGTGCATGTAGCT 60.078 57.895 0.00 0.00 45.94 3.32
3884 8722 1.094073 CAGCCCAGTGCATGTAGCTC 61.094 60.000 0.00 0.00 45.94 4.09
3885 8723 1.821332 GCCCAGTGCATGTAGCTCC 60.821 63.158 0.00 0.00 45.94 4.70
3886 8724 1.153086 CCCAGTGCATGTAGCTCCC 60.153 63.158 0.00 0.00 45.94 4.30
3887 8725 1.522355 CCAGTGCATGTAGCTCCCG 60.522 63.158 0.00 0.00 45.94 5.14
3888 8726 2.176273 CAGTGCATGTAGCTCCCGC 61.176 63.158 0.00 0.00 45.94 6.13
3890 8728 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
3891 8729 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
3892 8730 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
3893 8731 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
3896 8734 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
3908 8746 4.785453 GCGCAGGGTCTGGGGAAG 62.785 72.222 0.30 0.00 43.28 3.46
3909 8747 4.101448 CGCAGGGTCTGGGGAAGG 62.101 72.222 4.35 0.00 40.11 3.46
3910 8748 3.732849 GCAGGGTCTGGGGAAGGG 61.733 72.222 0.00 0.00 31.21 3.95
3911 8749 2.204151 CAGGGTCTGGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
3912 8750 2.125225 AGGGTCTGGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
3913 8751 3.015753 GGGTCTGGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
3914 8752 3.400054 GGTCTGGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
3915 8753 2.284405 GTCTGGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
3916 8754 2.284405 TCTGGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
3917 8755 3.400054 CTGGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
3918 8756 4.257810 TGGGGAAGGGTCCGACCA 62.258 66.667 19.43 0.00 46.04 4.02
3919 8757 3.714001 GGGGAAGGGTCCGACCAC 61.714 72.222 19.43 8.70 46.04 4.16
3920 8758 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
3921 8759 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
3922 8760 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
3923 8761 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
3924 8762 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
3925 8763 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
3926 8764 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
3936 8774 3.934068 ACCACTTTGGGTCTATTGTACG 58.066 45.455 0.00 0.00 43.37 3.67
3937 8775 2.676342 CCACTTTGGGTCTATTGTACGC 59.324 50.000 0.00 0.00 32.67 4.42
3938 8776 3.331150 CACTTTGGGTCTATTGTACGCA 58.669 45.455 0.00 0.00 37.94 5.24
3939 8777 3.370978 CACTTTGGGTCTATTGTACGCAG 59.629 47.826 0.00 0.00 40.36 5.18
3940 8778 2.018542 TTGGGTCTATTGTACGCAGC 57.981 50.000 0.00 0.00 40.36 5.25
3941 8779 0.177141 TGGGTCTATTGTACGCAGCC 59.823 55.000 0.00 0.00 35.18 4.85
3942 8780 0.464452 GGGTCTATTGTACGCAGCCT 59.536 55.000 0.00 0.00 0.00 4.58
3943 8781 1.134491 GGGTCTATTGTACGCAGCCTT 60.134 52.381 0.00 0.00 0.00 4.35
3944 8782 2.629051 GGTCTATTGTACGCAGCCTTT 58.371 47.619 0.00 0.00 0.00 3.11
3945 8783 2.608090 GGTCTATTGTACGCAGCCTTTC 59.392 50.000 0.00 0.00 0.00 2.62
3946 8784 2.608090 GTCTATTGTACGCAGCCTTTCC 59.392 50.000 0.00 0.00 0.00 3.13
3947 8785 1.940613 CTATTGTACGCAGCCTTTCCC 59.059 52.381 0.00 0.00 0.00 3.97
3948 8786 0.328258 ATTGTACGCAGCCTTTCCCT 59.672 50.000 0.00 0.00 0.00 4.20
3949 8787 0.978151 TTGTACGCAGCCTTTCCCTA 59.022 50.000 0.00 0.00 0.00 3.53
3950 8788 0.248289 TGTACGCAGCCTTTCCCTAC 59.752 55.000 0.00 0.00 0.00 3.18
3951 8789 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
3952 8790 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
3953 8791 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
3954 8792 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
3955 8793 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
3956 8794 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
3957 8795 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
3958 8796 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
3959 8797 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
3960 8798 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
3961 8799 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
3962 8800 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
3974 8812 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
3975 8813 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
3976 8814 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
3977 8815 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
3978 8816 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
3979 8817 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
3980 8818 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
3981 8819 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
3982 8820 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
3983 8821 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
3984 8822 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
3985 8823 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
3986 8824 1.235724 GTTTCCAGGACTTGAACCCG 58.764 55.000 0.00 0.00 0.00 5.28
3987 8825 0.841289 TTTCCAGGACTTGAACCCGT 59.159 50.000 0.00 0.00 0.00 5.28
3988 8826 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.000 0.00 0.00 0.00 4.94
3989 8827 0.761323 TCCAGGACTTGAACCCGTGA 60.761 55.000 0.00 0.00 0.00 4.35
3990 8828 0.602905 CCAGGACTTGAACCCGTGAC 60.603 60.000 0.00 0.00 0.00 3.67
3991 8829 0.602905 CAGGACTTGAACCCGTGACC 60.603 60.000 0.00 0.00 0.00 4.02
3992 8830 0.763223 AGGACTTGAACCCGTGACCT 60.763 55.000 0.00 0.00 0.00 3.85
3993 8831 0.320508 GGACTTGAACCCGTGACCTC 60.321 60.000 0.00 0.00 0.00 3.85
3994 8832 0.391597 GACTTGAACCCGTGACCTCA 59.608 55.000 0.00 0.00 0.00 3.86
3995 8833 1.002087 GACTTGAACCCGTGACCTCAT 59.998 52.381 0.00 0.00 0.00 2.90
3996 8834 1.270839 ACTTGAACCCGTGACCTCATG 60.271 52.381 0.00 0.00 0.00 3.07
4046 8892 3.461061 TCTAGCATGCATAACAGTGCTC 58.539 45.455 21.98 0.00 45.27 4.26
4055 8901 7.148289 GCATGCATAACAGTGCTCTTATGATAT 60.148 37.037 14.21 6.37 45.27 1.63
4322 9484 7.380536 ACCGTGTAAATGAAACAGATAGTACA 58.619 34.615 0.00 0.00 0.00 2.90
4367 9529 7.441157 TCTCAGAGTTGTAATTTTTCACGTCAT 59.559 33.333 0.00 0.00 0.00 3.06
4371 9533 8.567948 AGAGTTGTAATTTTTCACGTCATGAAT 58.432 29.630 0.00 0.00 46.80 2.57
4379 9542 9.757227 AATTTTTCACGTCATGAATAAAAAGGA 57.243 25.926 16.72 4.17 46.80 3.36
4393 9556 8.060689 TGAATAAAAAGGAGGATCATGGATTCA 58.939 33.333 0.00 0.00 36.25 2.57
4434 9597 3.817084 CTCACTCTTTGCAAATGGTCTCA 59.183 43.478 13.23 1.04 0.00 3.27
4443 9606 2.606725 GCAAATGGTCTCAGATGTCGAG 59.393 50.000 0.00 0.00 0.00 4.04
4468 9631 8.247562 AGAGATAATGAGAATACCGATGCTAAC 58.752 37.037 0.00 0.00 0.00 2.34
4470 9633 4.848562 ATGAGAATACCGATGCTAACGA 57.151 40.909 0.00 0.00 0.00 3.85
4528 9691 4.850680 AGGGTGTTTCAACTGTTGAGTAA 58.149 39.130 21.13 12.43 41.38 2.24
4588 9752 0.904865 ATCTCACCTCCACTTCGCCA 60.905 55.000 0.00 0.00 0.00 5.69
4598 9762 1.028330 CACTTCGCCACCAGATGCAT 61.028 55.000 0.00 0.00 0.00 3.96
4623 9793 0.736053 GTTGGACGCAAACTGAACCA 59.264 50.000 0.00 0.00 0.00 3.67
4717 9887 3.126073 CAAAGCAGGAAACTTTTGGAGC 58.874 45.455 0.00 0.00 40.21 4.70
4740 9910 1.450360 AAGGGGAGAAACTTGGAGCT 58.550 50.000 0.00 0.00 0.00 4.09
4773 9943 0.673644 CTGTAGGCCAACCAGGAACG 60.674 60.000 5.01 0.00 41.22 3.95
4813 9983 8.918202 TTAAACCCAATACATAGGTGATGATC 57.082 34.615 0.00 0.00 39.06 2.92
4903 10073 2.358957 TGCATCTTTGAGATCCAACCG 58.641 47.619 0.00 0.00 31.32 4.44
4925 10095 4.429108 GAGTCATTCTGCTCTGTAACTCC 58.571 47.826 0.00 0.00 0.00 3.85
4943 10113 5.552870 ACTCCAAGAGTAGTGTGTGATTT 57.447 39.130 0.00 0.00 41.51 2.17
4958 10128 7.491048 AGTGTGTGATTTGTTGAATTTTGTACC 59.509 33.333 0.00 0.00 0.00 3.34
4959 10129 7.276658 GTGTGTGATTTGTTGAATTTTGTACCA 59.723 33.333 0.00 0.00 0.00 3.25
4975 10145 9.912634 ATTTTGTACCATATGTCAGTTTTTCAG 57.087 29.630 1.24 0.00 0.00 3.02
4977 10147 7.905604 TGTACCATATGTCAGTTTTTCAGAG 57.094 36.000 1.24 0.00 0.00 3.35
4978 10148 7.676004 TGTACCATATGTCAGTTTTTCAGAGA 58.324 34.615 1.24 0.00 0.00 3.10
5016 10186 5.306937 TGAAATTCCTGTGGAGTTGAGTCTA 59.693 40.000 0.00 0.00 32.02 2.59
5176 10352 6.349611 GGCTTGCATCATTCTTCAGTCTTTTA 60.350 38.462 0.00 0.00 0.00 1.52
5194 10432 8.871125 AGTCTTTTAGTCCTGAGATTTTAGTCA 58.129 33.333 0.00 0.00 0.00 3.41
5357 11017 3.853355 AATCTTGGCATCGAGGAGATT 57.147 42.857 0.00 3.89 37.52 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.052082 GGCGGATCGATGCCCATG 61.052 66.667 14.38 0.72 45.73 3.66
6 7 4.585526 TGTCCGGCGGATCGATGC 62.586 66.667 33.54 18.36 32.73 3.91
7 8 2.355126 CTGTCCGGCGGATCGATG 60.355 66.667 33.54 15.95 32.73 3.84
8 9 2.518587 TCTGTCCGGCGGATCGAT 60.519 61.111 33.54 0.00 32.73 3.59
9 10 3.515286 GTCTGTCCGGCGGATCGA 61.515 66.667 33.54 26.34 34.56 3.59
10 11 3.138930 ATGTCTGTCCGGCGGATCG 62.139 63.158 33.54 24.50 34.56 3.69
11 12 1.592669 CATGTCTGTCCGGCGGATC 60.593 63.158 33.54 24.27 34.56 3.36
13 14 2.678580 TCATGTCTGTCCGGCGGA 60.679 61.111 27.46 27.46 0.00 5.54
14 15 2.509336 GTCATGTCTGTCCGGCGG 60.509 66.667 22.51 22.51 0.00 6.13
15 16 2.509336 GGTCATGTCTGTCCGGCG 60.509 66.667 0.00 0.00 0.00 6.46
17 18 0.250234 ATGTGGTCATGTCTGTCCGG 59.750 55.000 0.00 0.00 33.75 5.14
18 19 1.362768 CATGTGGTCATGTCTGTCCG 58.637 55.000 0.00 0.00 44.37 4.79
19 20 1.679944 CCCATGTGGTCATGTCTGTCC 60.680 57.143 7.30 0.00 46.99 4.02
20 21 1.679944 CCCCATGTGGTCATGTCTGTC 60.680 57.143 7.30 0.00 46.99 3.51
21 22 0.329261 CCCCATGTGGTCATGTCTGT 59.671 55.000 7.30 0.00 46.99 3.41
22 23 0.394762 CCCCCATGTGGTCATGTCTG 60.395 60.000 7.30 0.00 46.99 3.51
23 24 0.549902 TCCCCCATGTGGTCATGTCT 60.550 55.000 7.30 0.00 46.99 3.41
24 25 0.107017 CTCCCCCATGTGGTCATGTC 60.107 60.000 7.30 0.00 46.99 3.06
25 26 0.549902 TCTCCCCCATGTGGTCATGT 60.550 55.000 7.30 0.00 46.99 3.21
27 28 1.639635 GCTCTCCCCCATGTGGTCAT 61.640 60.000 0.00 0.00 34.21 3.06
28 29 2.300967 GCTCTCCCCCATGTGGTCA 61.301 63.158 0.00 0.00 0.00 4.02
30 31 2.204136 TGCTCTCCCCCATGTGGT 60.204 61.111 0.00 0.00 0.00 4.16
31 32 2.273449 GTGCTCTCCCCCATGTGG 59.727 66.667 0.00 0.00 0.00 4.17
32 33 2.124983 CGTGCTCTCCCCCATGTG 60.125 66.667 0.00 0.00 0.00 3.21
33 34 2.284625 TCGTGCTCTCCCCCATGT 60.285 61.111 0.00 0.00 0.00 3.21
34 35 2.187946 GTCGTGCTCTCCCCCATG 59.812 66.667 0.00 0.00 0.00 3.66
37 38 4.459089 GCTGTCGTGCTCTCCCCC 62.459 72.222 0.00 0.00 0.00 5.40
38 39 4.459089 GGCTGTCGTGCTCTCCCC 62.459 72.222 0.00 0.00 0.00 4.81
39 40 2.914777 GATGGCTGTCGTGCTCTCCC 62.915 65.000 0.00 0.00 0.00 4.30
40 41 1.520342 GATGGCTGTCGTGCTCTCC 60.520 63.158 0.00 0.00 0.00 3.71
41 42 1.875813 CGATGGCTGTCGTGCTCTC 60.876 63.158 4.99 0.00 36.88 3.20
42 43 2.182791 CGATGGCTGTCGTGCTCT 59.817 61.111 4.99 0.00 36.88 4.09
45 46 2.887568 CTCCGATGGCTGTCGTGC 60.888 66.667 10.89 0.00 39.89 5.34
46 47 2.202797 CCTCCGATGGCTGTCGTG 60.203 66.667 10.89 4.38 39.89 4.35
47 48 3.461773 CCCTCCGATGGCTGTCGT 61.462 66.667 10.89 0.00 39.89 4.34
48 49 2.721167 TTCCCTCCGATGGCTGTCG 61.721 63.158 5.99 5.99 41.13 4.35
50 51 2.670148 GGTTCCCTCCGATGGCTGT 61.670 63.158 0.00 0.00 0.00 4.40
59 60 1.345715 ATGGATGACCGGTTCCCTCC 61.346 60.000 20.37 17.48 39.42 4.30
61 62 1.635817 CCATGGATGACCGGTTCCCT 61.636 60.000 20.37 9.73 39.42 4.20
62 63 1.152963 CCATGGATGACCGGTTCCC 60.153 63.158 20.37 16.18 39.42 3.97
63 64 1.823899 GCCATGGATGACCGGTTCC 60.824 63.158 18.40 17.13 39.42 3.62
65 66 2.124736 CGCCATGGATGACCGGTT 60.125 61.111 18.40 0.00 39.42 4.44
66 67 2.593468 CTTCGCCATGGATGACCGGT 62.593 60.000 18.40 6.92 39.42 5.28
67 68 1.889105 CTTCGCCATGGATGACCGG 60.889 63.158 18.40 0.00 39.42 5.28
70 71 1.134699 TGACTCTTCGCCATGGATGAC 60.135 52.381 18.40 0.00 0.00 3.06
73 74 3.768633 GTGACTCTTCGCCATGGAT 57.231 52.632 18.40 0.00 0.00 3.41
80 81 2.430382 TTCCGGTGGTGACTCTTCGC 62.430 60.000 0.00 0.00 0.00 4.70
82 83 0.037232 CCTTCCGGTGGTGACTCTTC 60.037 60.000 0.00 0.00 0.00 2.87
83 84 0.471211 TCCTTCCGGTGGTGACTCTT 60.471 55.000 14.11 0.00 0.00 2.85
84 85 0.900647 CTCCTTCCGGTGGTGACTCT 60.901 60.000 14.11 0.00 0.00 3.24
86 87 0.471211 TTCTCCTTCCGGTGGTGACT 60.471 55.000 16.34 0.00 0.00 3.41
87 88 0.613777 ATTCTCCTTCCGGTGGTGAC 59.386 55.000 16.34 0.00 0.00 3.67
88 89 0.902531 GATTCTCCTTCCGGTGGTGA 59.097 55.000 14.11 14.00 0.00 4.02
89 90 0.107654 GGATTCTCCTTCCGGTGGTG 60.108 60.000 14.11 12.25 32.53 4.17
90 91 2.297937 GGATTCTCCTTCCGGTGGT 58.702 57.895 14.11 0.00 32.53 4.16
96 97 2.589159 GCGCCGGATTCTCCTTCC 60.589 66.667 5.05 0.00 33.30 3.46
97 98 2.589159 GGCGCCGGATTCTCCTTC 60.589 66.667 12.58 0.00 33.30 3.46
98 99 3.399181 TGGCGCCGGATTCTCCTT 61.399 61.111 23.90 0.00 33.30 3.36
99 100 4.162690 GTGGCGCCGGATTCTCCT 62.163 66.667 23.90 0.00 33.30 3.69
102 103 4.473520 CTGGTGGCGCCGGATTCT 62.474 66.667 23.90 0.00 46.81 2.40
112 113 3.808218 TTTGGGTGCTCCTGGTGGC 62.808 63.158 4.53 7.29 36.20 5.01
113 114 1.604593 CTTTGGGTGCTCCTGGTGG 60.605 63.158 4.53 0.00 36.20 4.61
115 116 2.116125 GCTTTGGGTGCTCCTGGT 59.884 61.111 4.53 0.00 36.20 4.00
116 117 2.115910 TGCTTTGGGTGCTCCTGG 59.884 61.111 4.53 0.00 36.20 4.45
119 120 1.391157 TTGTGTGCTTTGGGTGCTCC 61.391 55.000 0.00 0.00 0.00 4.70
120 121 0.249031 GTTGTGTGCTTTGGGTGCTC 60.249 55.000 0.00 0.00 0.00 4.26
121 122 0.684153 AGTTGTGTGCTTTGGGTGCT 60.684 50.000 0.00 0.00 0.00 4.40
122 123 0.528249 CAGTTGTGTGCTTTGGGTGC 60.528 55.000 0.00 0.00 0.00 5.01
123 124 0.528249 GCAGTTGTGTGCTTTGGGTG 60.528 55.000 0.00 0.00 40.54 4.61
124 125 1.675720 GGCAGTTGTGTGCTTTGGGT 61.676 55.000 0.00 0.00 43.45 4.51
125 126 1.067916 GGCAGTTGTGTGCTTTGGG 59.932 57.895 0.00 0.00 43.45 4.12
130 131 1.529244 GGGAAGGCAGTTGTGTGCT 60.529 57.895 0.00 0.00 43.45 4.40
131 132 1.518903 GAGGGAAGGCAGTTGTGTGC 61.519 60.000 0.00 0.00 43.19 4.57
132 133 0.890996 GGAGGGAAGGCAGTTGTGTG 60.891 60.000 0.00 0.00 0.00 3.82
133 134 1.062488 AGGAGGGAAGGCAGTTGTGT 61.062 55.000 0.00 0.00 0.00 3.72
134 135 0.322008 GAGGAGGGAAGGCAGTTGTG 60.322 60.000 0.00 0.00 0.00 3.33
135 136 1.492993 GGAGGAGGGAAGGCAGTTGT 61.493 60.000 0.00 0.00 0.00 3.32
136 137 1.301293 GGAGGAGGGAAGGCAGTTG 59.699 63.158 0.00 0.00 0.00 3.16
137 138 1.925972 GGGAGGAGGGAAGGCAGTT 60.926 63.158 0.00 0.00 0.00 3.16
138 139 2.285743 GGGAGGAGGGAAGGCAGT 60.286 66.667 0.00 0.00 0.00 4.40
142 143 1.997874 CTGTGGGGAGGAGGGAAGG 60.998 68.421 0.00 0.00 0.00 3.46
144 145 1.229529 GTCTGTGGGGAGGAGGGAA 60.230 63.158 0.00 0.00 0.00 3.97
145 146 2.450243 GTCTGTGGGGAGGAGGGA 59.550 66.667 0.00 0.00 0.00 4.20
146 147 2.689034 GGTCTGTGGGGAGGAGGG 60.689 72.222 0.00 0.00 0.00 4.30
147 148 2.689034 GGGTCTGTGGGGAGGAGG 60.689 72.222 0.00 0.00 0.00 4.30
148 149 1.133809 TTTGGGTCTGTGGGGAGGAG 61.134 60.000 0.00 0.00 0.00 3.69
149 150 0.699577 TTTTGGGTCTGTGGGGAGGA 60.700 55.000 0.00 0.00 0.00 3.71
150 151 0.539669 GTTTTGGGTCTGTGGGGAGG 60.540 60.000 0.00 0.00 0.00 4.30
151 152 0.889186 CGTTTTGGGTCTGTGGGGAG 60.889 60.000 0.00 0.00 0.00 4.30
152 153 1.149627 CGTTTTGGGTCTGTGGGGA 59.850 57.895 0.00 0.00 0.00 4.81
153 154 1.901464 CCGTTTTGGGTCTGTGGGG 60.901 63.158 0.00 0.00 0.00 4.96
154 155 2.561037 GCCGTTTTGGGTCTGTGGG 61.561 63.158 0.00 0.00 38.63 4.61
155 156 2.903547 CGCCGTTTTGGGTCTGTGG 61.904 63.158 0.00 0.00 38.63 4.17
156 157 2.637025 CGCCGTTTTGGGTCTGTG 59.363 61.111 0.00 0.00 38.63 3.66
158 159 4.038080 GGCGCCGTTTTGGGTCTG 62.038 66.667 12.58 0.00 38.63 3.51
182 183 1.859302 AAGCCCACAACTTTGGTTCA 58.141 45.000 0.00 0.00 34.44 3.18
183 184 2.167487 TGAAAGCCCACAACTTTGGTTC 59.833 45.455 0.00 0.00 37.47 3.62
225 226 1.057275 GGTTCATCTCCCCCTCCTCC 61.057 65.000 0.00 0.00 0.00 4.30
307 309 0.539986 GTGCTCTGGATCGGGGTAAA 59.460 55.000 0.00 0.00 0.00 2.01
343 345 0.321564 CCGATCTGGTTGTTGGCTGA 60.322 55.000 0.00 0.00 0.00 4.26
363 365 1.759445 CTCCTCCATGTCAGGTTCGAT 59.241 52.381 7.63 0.00 32.20 3.59
443 445 4.101448 ACCTGGGCCTCGTGCATC 62.101 66.667 4.53 0.00 43.89 3.91
483 485 1.678970 GCCGCCTTCCCTCAATTGT 60.679 57.895 5.13 0.00 0.00 2.71
540 543 4.912395 GCCTTGGTGGTGTGGGCA 62.912 66.667 0.00 0.00 42.08 5.36
559 562 2.687566 CCTAGGGTTCCAGGCGGT 60.688 66.667 0.00 0.00 0.00 5.68
595 598 2.504244 CGAGGTCTTCGGTCACGC 60.504 66.667 0.00 0.00 45.54 5.34
625 628 3.605749 AACTCCATGTGGACGCCGG 62.606 63.158 0.00 0.00 39.78 6.13
632 635 0.749454 GCCCTAGCAACTCCATGTGG 60.749 60.000 0.00 0.00 39.53 4.17
634 637 1.486726 GTAGCCCTAGCAACTCCATGT 59.513 52.381 0.00 0.00 43.56 3.21
637 640 0.042731 AGGTAGCCCTAGCAACTCCA 59.957 55.000 7.20 0.00 40.19 3.86
638 641 0.753867 GAGGTAGCCCTAGCAACTCC 59.246 60.000 7.20 0.00 42.86 3.85
639 642 0.753867 GGAGGTAGCCCTAGCAACTC 59.246 60.000 7.20 0.00 42.86 3.01
640 643 1.043673 CGGAGGTAGCCCTAGCAACT 61.044 60.000 7.20 0.00 42.86 3.16
641 644 1.442148 CGGAGGTAGCCCTAGCAAC 59.558 63.158 7.20 1.54 42.86 4.17
660 663 2.747855 CTCTTCCCTTGCCACCGC 60.748 66.667 0.00 0.00 0.00 5.68
661 664 2.045926 CCTCTTCCCTTGCCACCG 60.046 66.667 0.00 0.00 0.00 4.94
662 665 2.361737 GCCTCTTCCCTTGCCACC 60.362 66.667 0.00 0.00 0.00 4.61
663 666 2.747855 CGCCTCTTCCCTTGCCAC 60.748 66.667 0.00 0.00 0.00 5.01
664 667 4.033776 CCGCCTCTTCCCTTGCCA 62.034 66.667 0.00 0.00 0.00 4.92
665 668 3.268103 TTCCGCCTCTTCCCTTGCC 62.268 63.158 0.00 0.00 0.00 4.52
666 669 1.746991 CTTCCGCCTCTTCCCTTGC 60.747 63.158 0.00 0.00 0.00 4.01
667 670 1.078143 CCTTCCGCCTCTTCCCTTG 60.078 63.158 0.00 0.00 0.00 3.61
671 674 3.798511 CCCCCTTCCGCCTCTTCC 61.799 72.222 0.00 0.00 0.00 3.46
688 691 3.641454 GGGCGATCCAGATCCCCC 61.641 72.222 13.36 13.36 45.61 5.40
689 692 3.641454 GGGGCGATCCAGATCCCC 61.641 72.222 18.73 18.73 42.61 4.81
690 693 3.641454 GGGGGCGATCCAGATCCC 61.641 72.222 2.11 4.72 37.22 3.85
691 694 4.008933 CGGGGGCGATCCAGATCC 62.009 72.222 2.11 0.00 37.22 3.36
692 695 2.917751 TCGGGGGCGATCCAGATC 60.918 66.667 0.00 0.00 37.22 2.75
693 696 2.919856 CTCGGGGGCGATCCAGAT 60.920 66.667 0.00 0.00 37.22 2.90
694 697 4.458829 ACTCGGGGGCGATCCAGA 62.459 66.667 0.00 0.00 37.22 3.86
695 698 3.917760 GACTCGGGGGCGATCCAG 61.918 72.222 0.00 0.00 37.22 3.86
708 711 3.866582 CATCCCCCAGGGCGACTC 61.867 72.222 0.00 0.00 43.94 3.36
713 716 4.847367 CCTTGCATCCCCCAGGGC 62.847 72.222 0.00 0.00 43.94 5.19
715 718 3.023116 TCCCTTGCATCCCCCAGG 61.023 66.667 0.00 0.00 0.00 4.45
716 719 2.599597 CTCCCTTGCATCCCCCAG 59.400 66.667 0.00 0.00 0.00 4.45
717 720 3.023116 CCTCCCTTGCATCCCCCA 61.023 66.667 0.00 0.00 0.00 4.96
718 721 4.529731 GCCTCCCTTGCATCCCCC 62.530 72.222 0.00 0.00 0.00 5.40
721 724 4.883354 CCCGCCTCCCTTGCATCC 62.883 72.222 0.00 0.00 0.00 3.51
730 733 3.561241 GAATCCTCCCCCGCCTCC 61.561 72.222 0.00 0.00 0.00 4.30
731 734 3.930012 CGAATCCTCCCCCGCCTC 61.930 72.222 0.00 0.00 0.00 4.70
736 739 3.242291 ATCCGCGAATCCTCCCCC 61.242 66.667 8.23 0.00 0.00 5.40
737 740 2.031163 CATCCGCGAATCCTCCCC 59.969 66.667 8.23 0.00 0.00 4.81
739 742 0.938008 GAAACATCCGCGAATCCTCC 59.062 55.000 8.23 0.00 0.00 4.30
740 743 1.594862 CTGAAACATCCGCGAATCCTC 59.405 52.381 8.23 0.00 0.00 3.71
741 744 1.207089 TCTGAAACATCCGCGAATCCT 59.793 47.619 8.23 0.00 0.00 3.24
742 745 1.651987 TCTGAAACATCCGCGAATCC 58.348 50.000 8.23 0.00 0.00 3.01
743 746 5.403897 TTTATCTGAAACATCCGCGAATC 57.596 39.130 8.23 0.00 0.00 2.52
744 747 5.354234 AGTTTTATCTGAAACATCCGCGAAT 59.646 36.000 8.23 0.00 40.98 3.34
746 749 4.250464 AGTTTTATCTGAAACATCCGCGA 58.750 39.130 8.23 0.00 40.98 5.87
748 751 7.527457 ACTAAAGTTTTATCTGAAACATCCGC 58.473 34.615 0.00 0.00 40.98 5.54
765 768 8.665685 CGGATTTGCTAATTCAGTACTAAAGTT 58.334 33.333 0.00 0.00 0.00 2.66
766 769 8.038944 TCGGATTTGCTAATTCAGTACTAAAGT 58.961 33.333 0.00 0.00 0.00 2.66
768 771 8.958119 ATCGGATTTGCTAATTCAGTACTAAA 57.042 30.769 0.00 0.00 0.00 1.85
772 3166 9.997482 TTTTAATCGGATTTGCTAATTCAGTAC 57.003 29.630 8.76 0.00 0.00 2.73
796 3190 6.388619 TTCAGCTTTCCCCTACTTCTATTT 57.611 37.500 0.00 0.00 0.00 1.40
797 3191 6.582929 ATTCAGCTTTCCCCTACTTCTATT 57.417 37.500 0.00 0.00 0.00 1.73
799 3193 6.464465 GCATATTCAGCTTTCCCCTACTTCTA 60.464 42.308 0.00 0.00 0.00 2.10
801 3195 4.517075 GCATATTCAGCTTTCCCCTACTTC 59.483 45.833 0.00 0.00 0.00 3.01
803 3197 3.459598 TGCATATTCAGCTTTCCCCTACT 59.540 43.478 0.00 0.00 0.00 2.57
804 3198 3.820557 TGCATATTCAGCTTTCCCCTAC 58.179 45.455 0.00 0.00 0.00 3.18
805 3199 4.464008 CTTGCATATTCAGCTTTCCCCTA 58.536 43.478 0.00 0.00 0.00 3.53
811 3209 2.429610 CCTGCCTTGCATATTCAGCTTT 59.570 45.455 0.00 0.00 38.13 3.51
816 3214 4.980339 TCTATCCTGCCTTGCATATTCA 57.020 40.909 0.00 0.00 38.13 2.57
825 3223 3.749226 GCAGCTTATTCTATCCTGCCTT 58.251 45.455 0.00 0.00 42.17 4.35
847 3245 2.010497 GAGACGGAAGGAAGAAATGGC 58.990 52.381 0.00 0.00 0.00 4.40
849 3247 2.237392 AGGGAGACGGAAGGAAGAAATG 59.763 50.000 0.00 0.00 0.00 2.32
850 3248 2.502130 GAGGGAGACGGAAGGAAGAAAT 59.498 50.000 0.00 0.00 0.00 2.17
853 3251 0.680280 CGAGGGAGACGGAAGGAAGA 60.680 60.000 0.00 0.00 0.00 2.87
854 3252 1.810532 CGAGGGAGACGGAAGGAAG 59.189 63.158 0.00 0.00 0.00 3.46
893 3312 1.065928 CGTCGTACAGGGATGGAGC 59.934 63.158 0.00 0.00 0.00 4.70
912 3331 2.046023 TTGAGCTGGGATGCCGTG 60.046 61.111 0.00 0.00 0.00 4.94
1529 3992 1.002274 GCAGGGAAGAGGAGGAGGA 59.998 63.158 0.00 0.00 0.00 3.71
1532 4000 0.325110 CAGAGCAGGGAAGAGGAGGA 60.325 60.000 0.00 0.00 0.00 3.71
1558 4033 9.915629 AATCACTAGTCAATCGGAGTATTAATC 57.084 33.333 0.00 0.00 31.12 1.75
1568 4043 3.551890 CCAACGAATCACTAGTCAATCGG 59.448 47.826 9.12 0.00 34.81 4.18
1617 4116 2.053747 TGGGGATTACTCCACCAACT 57.946 50.000 0.00 0.00 45.27 3.16
1685 5117 2.202987 GGATGAGCGACTGCCCAG 60.203 66.667 0.00 0.00 44.31 4.45
1686 5118 4.147449 CGGATGAGCGACTGCCCA 62.147 66.667 0.00 0.00 44.31 5.36
1760 5213 2.602211 GCAGTCGTGATCAATCAGACAG 59.398 50.000 18.03 13.43 37.39 3.51
1761 5214 2.610433 GCAGTCGTGATCAATCAGACA 58.390 47.619 18.03 0.00 37.39 3.41
1961 5439 2.032550 ACAAATCATCGCTAGCACATGC 59.967 45.455 16.45 0.00 42.49 4.06
2061 5980 9.591792 CAATTTTTCAGAGGAAAGACTTTTCTT 57.408 29.630 10.17 0.00 44.53 2.52
2062 5981 8.753133 ACAATTTTTCAGAGGAAAGACTTTTCT 58.247 29.630 8.57 8.57 43.47 2.52
2063 5982 8.811378 CACAATTTTTCAGAGGAAAGACTTTTC 58.189 33.333 1.12 0.00 43.47 2.29
2069 5988 5.850557 TGCACAATTTTTCAGAGGAAAGA 57.149 34.783 0.00 0.00 43.47 2.52
2109 6550 2.203070 GGGAGCTACATGCACGGG 60.203 66.667 0.00 0.00 45.94 5.28
2142 6583 3.909732 ACAAAAGACCAAAGTGATCCCA 58.090 40.909 0.00 0.00 0.00 4.37
2147 6588 5.106078 GGTTGTGTACAAAAGACCAAAGTGA 60.106 40.000 0.00 0.00 37.63 3.41
2155 6605 4.643334 AGGGAAAGGTTGTGTACAAAAGAC 59.357 41.667 0.00 0.00 37.63 3.01
2165 6615 0.310854 GAACGCAGGGAAAGGTTGTG 59.689 55.000 0.00 0.00 0.00 3.33
2166 6616 0.182775 AGAACGCAGGGAAAGGTTGT 59.817 50.000 0.00 0.00 0.00 3.32
2171 6621 2.996621 CTCTTGTAGAACGCAGGGAAAG 59.003 50.000 0.00 0.00 0.00 2.62
2181 6631 5.047235 TCCTAGAAACTGCCTCTTGTAGAAC 60.047 44.000 0.00 0.00 0.00 3.01
2186 6636 3.243724 AGTCCTAGAAACTGCCTCTTGT 58.756 45.455 0.00 0.00 0.00 3.16
2195 6645 2.970640 ACGGGTTTGAGTCCTAGAAACT 59.029 45.455 0.00 0.00 31.54 2.66
2201 6651 0.971386 GGTCACGGGTTTGAGTCCTA 59.029 55.000 0.00 0.00 0.00 2.94
2223 6673 4.129380 GCTATCTATGCACATGTGACCAA 58.871 43.478 29.80 11.35 0.00 3.67
2228 6678 4.070009 ACCATGCTATCTATGCACATGTG 58.930 43.478 21.83 21.83 43.59 3.21
2230 6680 4.758165 TGAACCATGCTATCTATGCACATG 59.242 41.667 0.00 0.00 43.59 3.21
2231 6681 4.976864 TGAACCATGCTATCTATGCACAT 58.023 39.130 0.00 0.00 43.59 3.21
2232 6682 4.420522 TGAACCATGCTATCTATGCACA 57.579 40.909 0.00 0.00 43.59 4.57
2233 6683 5.528690 TCTTTGAACCATGCTATCTATGCAC 59.471 40.000 0.00 0.00 43.59 4.57
2234 6684 5.683681 TCTTTGAACCATGCTATCTATGCA 58.316 37.500 0.00 0.00 44.95 3.96
2235 6685 6.624352 TTCTTTGAACCATGCTATCTATGC 57.376 37.500 0.00 0.00 0.00 3.14
2238 6688 9.023962 ACATTTTTCTTTGAACCATGCTATCTA 57.976 29.630 0.00 0.00 0.00 1.98
2239 6689 7.816031 CACATTTTTCTTTGAACCATGCTATCT 59.184 33.333 0.00 0.00 0.00 1.98
2240 6690 7.412237 GCACATTTTTCTTTGAACCATGCTATC 60.412 37.037 0.00 0.00 0.00 2.08
2241 6691 6.369615 GCACATTTTTCTTTGAACCATGCTAT 59.630 34.615 0.00 0.00 0.00 2.97
2242 6692 5.695816 GCACATTTTTCTTTGAACCATGCTA 59.304 36.000 0.00 0.00 0.00 3.49
2243 6693 4.512571 GCACATTTTTCTTTGAACCATGCT 59.487 37.500 0.00 0.00 0.00 3.79
2244 6694 4.272991 TGCACATTTTTCTTTGAACCATGC 59.727 37.500 0.00 0.00 0.00 4.06
2245 6695 5.987777 TGCACATTTTTCTTTGAACCATG 57.012 34.783 0.00 0.00 0.00 3.66
2246 6696 7.669427 TCTATGCACATTTTTCTTTGAACCAT 58.331 30.769 0.00 0.00 0.00 3.55
2247 6697 7.048629 TCTATGCACATTTTTCTTTGAACCA 57.951 32.000 0.00 0.00 0.00 3.67
2248 6698 9.638239 TTATCTATGCACATTTTTCTTTGAACC 57.362 29.630 0.00 0.00 0.00 3.62
2292 6742 1.076024 AGATGTTGTCACCTGCCCAAT 59.924 47.619 0.00 0.00 0.00 3.16
2548 6998 0.250727 TGTTAGCCAGCAGTGTTCCC 60.251 55.000 0.00 0.00 0.00 3.97
2826 7317 8.242053 AGCATGAATTTCTTGAGTTATGTCTTG 58.758 33.333 14.56 0.00 0.00 3.02
2875 7463 2.618709 GGAACTGCAGTAACAGCAAACT 59.381 45.455 22.01 0.00 42.17 2.66
2884 7477 4.530710 ACAGTATTCGGAACTGCAGTAA 57.469 40.909 22.01 11.27 46.73 2.24
2903 7500 7.569240 ACCCAGAAAATATTTTGAAACCAACA 58.431 30.769 17.98 0.00 0.00 3.33
2947 7549 6.766944 TCACGGAAACAACTTGGTATTCTTAA 59.233 34.615 0.00 0.00 0.00 1.85
3342 8180 2.460853 CCACCCGGCCTTCCCATAT 61.461 63.158 0.00 0.00 0.00 1.78
3366 8204 0.109342 CAGACACCACCCTTGCTCTT 59.891 55.000 0.00 0.00 0.00 2.85
3404 8242 2.266055 CTTGCCACTCTCCGGTCC 59.734 66.667 0.00 0.00 0.00 4.46
3411 8249 1.346068 GACTTCACTCCTTGCCACTCT 59.654 52.381 0.00 0.00 0.00 3.24
3862 8700 3.643595 TACATGCACTGGGCTGCCC 62.644 63.158 30.97 30.97 45.71 5.36
3863 8701 2.045045 TACATGCACTGGGCTGCC 60.045 61.111 11.05 11.05 45.15 4.85
3864 8702 2.768492 GCTACATGCACTGGGCTGC 61.768 63.158 2.50 0.00 45.15 5.25
3865 8703 1.077930 AGCTACATGCACTGGGCTG 60.078 57.895 2.50 1.44 45.94 4.85
3866 8704 1.222936 GAGCTACATGCACTGGGCT 59.777 57.895 2.50 13.76 45.94 5.19
3867 8705 1.821332 GGAGCTACATGCACTGGGC 60.821 63.158 0.00 0.00 45.94 5.36
3868 8706 1.153086 GGGAGCTACATGCACTGGG 60.153 63.158 0.00 0.00 45.94 4.45
3869 8707 1.522355 CGGGAGCTACATGCACTGG 60.522 63.158 0.00 0.00 45.94 4.00
3870 8708 4.115279 CGGGAGCTACATGCACTG 57.885 61.111 0.00 0.00 45.94 3.66
3891 8729 4.785453 CTTCCCCAGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
3892 8730 4.101448 CCTTCCCCAGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
3893 8731 3.732849 CCCTTCCCCAGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
3894 8732 2.204151 ACCCTTCCCCAGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
3895 8733 2.125225 GACCCTTCCCCAGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
3896 8734 3.015753 GGACCCTTCCCCAGACCC 61.016 72.222 0.00 0.00 35.57 4.46
3897 8735 3.400054 CGGACCCTTCCCCAGACC 61.400 72.222 0.00 0.00 38.99 3.85
3898 8736 2.284405 TCGGACCCTTCCCCAGAC 60.284 66.667 0.00 0.00 38.99 3.51
3899 8737 2.284405 GTCGGACCCTTCCCCAGA 60.284 66.667 0.00 0.00 38.99 3.86
3900 8738 3.400054 GGTCGGACCCTTCCCCAG 61.400 72.222 16.55 0.00 38.99 4.45
3901 8739 4.257810 TGGTCGGACCCTTCCCCA 62.258 66.667 23.81 0.69 38.99 4.96
3902 8740 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
3903 8741 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
3904 8742 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
3905 8743 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
3906 8744 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
3907 8745 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
3908 8746 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
3909 8747 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
3910 8748 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
3915 8753 3.867216 GCGTACAATAGACCCAAAGTGGT 60.867 47.826 0.00 0.00 42.79 4.16
3916 8754 2.676342 GCGTACAATAGACCCAAAGTGG 59.324 50.000 0.00 0.00 37.25 4.00
3917 8755 3.331150 TGCGTACAATAGACCCAAAGTG 58.669 45.455 0.00 0.00 0.00 3.16
3918 8756 3.596214 CTGCGTACAATAGACCCAAAGT 58.404 45.455 0.00 0.00 0.00 2.66
3919 8757 2.351726 GCTGCGTACAATAGACCCAAAG 59.648 50.000 0.00 0.00 0.00 2.77
3920 8758 2.352388 GCTGCGTACAATAGACCCAAA 58.648 47.619 0.00 0.00 0.00 3.28
3921 8759 1.406341 GGCTGCGTACAATAGACCCAA 60.406 52.381 0.00 0.00 0.00 4.12
3922 8760 0.177141 GGCTGCGTACAATAGACCCA 59.823 55.000 0.00 0.00 0.00 4.51
3923 8761 0.464452 AGGCTGCGTACAATAGACCC 59.536 55.000 0.00 0.00 0.00 4.46
3924 8762 2.311124 AAGGCTGCGTACAATAGACC 57.689 50.000 0.00 0.00 0.00 3.85
3925 8763 2.608090 GGAAAGGCTGCGTACAATAGAC 59.392 50.000 0.00 0.00 0.00 2.59
3926 8764 2.419574 GGGAAAGGCTGCGTACAATAGA 60.420 50.000 0.00 0.00 0.00 1.98
3927 8765 1.940613 GGGAAAGGCTGCGTACAATAG 59.059 52.381 0.00 0.00 0.00 1.73
3928 8766 1.557832 AGGGAAAGGCTGCGTACAATA 59.442 47.619 0.00 0.00 0.00 1.90
3929 8767 0.328258 AGGGAAAGGCTGCGTACAAT 59.672 50.000 0.00 0.00 0.00 2.71
3930 8768 0.978151 TAGGGAAAGGCTGCGTACAA 59.022 50.000 0.00 0.00 0.00 2.41
3931 8769 0.248289 GTAGGGAAAGGCTGCGTACA 59.752 55.000 0.00 0.00 36.89 2.90
3932 8770 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
3933 8771 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
3934 8772 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
3935 8773 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
3936 8774 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
3937 8775 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
3938 8776 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
3939 8777 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
3940 8778 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
3941 8779 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
3942 8780 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
3943 8781 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
3944 8782 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
3945 8783 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
3946 8784 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
3947 8785 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
3948 8786 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
3949 8787 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
3950 8788 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
3951 8789 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
3952 8790 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
3966 8804 1.476110 CGGGTTCAAGTCCTGGAAACA 60.476 52.381 0.00 0.00 32.36 2.83
3967 8805 1.235724 CGGGTTCAAGTCCTGGAAAC 58.764 55.000 0.00 0.00 0.00 2.78
3968 8806 0.841289 ACGGGTTCAAGTCCTGGAAA 59.159 50.000 0.00 0.00 35.79 3.13
3969 8807 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.000 0.00 0.00 35.79 3.53
3970 8808 0.761323 TCACGGGTTCAAGTCCTGGA 60.761 55.000 0.00 0.00 35.79 3.86
3971 8809 0.602905 GTCACGGGTTCAAGTCCTGG 60.603 60.000 0.00 0.00 35.79 4.45
3972 8810 0.602905 GGTCACGGGTTCAAGTCCTG 60.603 60.000 0.00 0.00 37.36 3.86
3973 8811 0.763223 AGGTCACGGGTTCAAGTCCT 60.763 55.000 0.00 0.00 0.00 3.85
3974 8812 0.320508 GAGGTCACGGGTTCAAGTCC 60.321 60.000 0.00 0.00 0.00 3.85
3975 8813 0.391597 TGAGGTCACGGGTTCAAGTC 59.608 55.000 0.00 0.00 0.00 3.01
3976 8814 1.056660 ATGAGGTCACGGGTTCAAGT 58.943 50.000 0.00 0.00 0.00 3.16
3977 8815 1.442769 CATGAGGTCACGGGTTCAAG 58.557 55.000 0.00 0.00 0.00 3.02
3978 8816 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69
3979 8817 1.676968 CCATGAGGTCACGGGTTCA 59.323 57.895 0.00 0.00 0.00 3.18
3980 8818 4.617875 CCATGAGGTCACGGGTTC 57.382 61.111 0.00 0.00 0.00 3.62
3988 8826 4.744563 TCATGCATATGTGACCATGAGGTC 60.745 45.833 15.60 7.69 46.83 3.85
3989 8827 3.136992 TCATGCATATGTGACCATGAGGT 59.863 43.478 15.60 0.00 42.31 3.85
3990 8828 3.746940 TCATGCATATGTGACCATGAGG 58.253 45.455 15.60 0.00 36.93 3.86
3991 8829 3.188667 GCTCATGCATATGTGACCATGAG 59.811 47.826 28.75 28.75 45.03 2.90
3992 8830 3.143728 GCTCATGCATATGTGACCATGA 58.856 45.455 17.48 17.48 39.41 3.07
3993 8831 2.882137 TGCTCATGCATATGTGACCATG 59.118 45.455 0.00 12.36 45.31 3.66
3994 8832 3.217681 TGCTCATGCATATGTGACCAT 57.782 42.857 0.00 0.00 45.31 3.55
3995 8833 2.713863 TGCTCATGCATATGTGACCA 57.286 45.000 0.00 0.00 45.31 4.02
4055 8901 7.825709 AGAGGACCATTTATTATCCATCCAAA 58.174 34.615 0.00 0.00 33.33 3.28
4187 9337 3.870274 TCAGCTTCTGTCATGATCCTTG 58.130 45.455 0.00 0.00 32.61 3.61
4322 9484 4.103357 GAGAACTTGCGTATACATGTCGT 58.897 43.478 0.00 0.00 0.00 4.34
4367 9529 8.060689 TGAATCCATGATCCTCCTTTTTATTCA 58.939 33.333 0.00 0.00 0.00 2.57
4371 9533 6.830324 CACTGAATCCATGATCCTCCTTTTTA 59.170 38.462 0.00 0.00 0.00 1.52
4379 9542 5.104235 TGAATCACACTGAATCCATGATCCT 60.104 40.000 0.00 0.00 0.00 3.24
4393 9556 7.559533 AGAGTGAGATATGTACTGAATCACACT 59.440 37.037 22.51 22.51 46.93 3.55
4434 9597 7.148323 CGGTATTCTCATTATCTCTCGACATCT 60.148 40.741 0.00 0.00 0.00 2.90
4443 9606 7.219154 CGTTAGCATCGGTATTCTCATTATCTC 59.781 40.741 0.00 0.00 0.00 2.75
4468 9631 2.302260 TGAGAGAAGATACAGGCCTCG 58.698 52.381 0.00 0.52 0.00 4.63
4470 9633 5.463154 ACTTATGAGAGAAGATACAGGCCT 58.537 41.667 0.00 0.00 0.00 5.19
4501 9664 2.175202 ACAGTTGAAACACCCTTGCAA 58.825 42.857 0.00 0.00 0.00 4.08
4507 9670 5.570234 TTTACTCAACAGTTGAAACACCC 57.430 39.130 16.85 0.00 39.58 4.61
4528 9691 6.469782 ACACATCAATGAGGTTCTTGTTTT 57.530 33.333 0.00 0.00 0.00 2.43
4565 9728 2.625790 GCGAAGTGGAGGTGAGATCTAT 59.374 50.000 0.00 0.00 0.00 1.98
4588 9752 4.202441 GTCCAACTTATCATGCATCTGGT 58.798 43.478 0.00 0.00 0.00 4.00
4598 9762 3.734463 TCAGTTTGCGTCCAACTTATCA 58.266 40.909 0.00 0.00 0.00 2.15
4717 9887 2.887152 CTCCAAGTTTCTCCCCTTTGTG 59.113 50.000 0.00 0.00 0.00 3.33
4740 9910 4.140782 TGGCCTACAGGAGTATCTGGAATA 60.141 45.833 3.32 0.00 38.98 1.75
4773 9943 0.678684 TTTAAACCCTAGCCGCCAGC 60.679 55.000 0.00 0.00 44.25 4.85
4799 9969 2.512910 TGGGGGATCATCACCTATGT 57.487 50.000 5.72 0.00 40.68 2.29
4813 9983 2.171448 CACTATTCCAGAGACTTGGGGG 59.829 54.545 4.49 0.00 38.81 5.40
4903 10073 4.081972 TGGAGTTACAGAGCAGAATGACTC 60.082 45.833 0.00 0.00 39.69 3.36
4925 10095 6.603237 TCAACAAATCACACACTACTCTTG 57.397 37.500 0.00 0.00 0.00 3.02
4991 10161 4.792068 ACTCAACTCCACAGGAATTTCAA 58.208 39.130 0.00 0.00 0.00 2.69
5016 10186 6.058183 GCCATTTGAGGTATCTAGTGTTGAT 58.942 40.000 0.00 0.00 0.00 2.57
5028 10199 5.282055 CTCACATAGAGCCATTTGAGGTA 57.718 43.478 0.00 0.00 37.59 3.08
5168 10344 8.871125 TGACTAAAATCTCAGGACTAAAAGACT 58.129 33.333 0.00 0.00 0.00 3.24
5207 10445 7.164230 ACAAGAGACTAAGGACAGACATAAG 57.836 40.000 0.00 0.00 0.00 1.73
5328 10985 5.180117 CCTCGATGCCAAGATTATACAAAGG 59.820 44.000 0.00 0.00 0.00 3.11
5339 10999 3.634397 AAAATCTCCTCGATGCCAAGA 57.366 42.857 0.00 0.00 31.20 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.