Multiple sequence alignment - TraesCS5A01G320500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G320500 chr5A 100.000 4816 0 0 1 4816 533557640 533552825 0.000000e+00 8894.0
1 TraesCS5A01G320500 chr5B 89.048 1744 122 25 1 1699 506316492 506314773 0.000000e+00 2098.0
2 TraesCS5A01G320500 chr5B 91.196 920 61 6 3113 4029 506313211 506312309 0.000000e+00 1232.0
3 TraesCS5A01G320500 chr5B 90.094 959 57 11 1990 2916 506314444 506313492 0.000000e+00 1210.0
4 TraesCS5A01G320500 chr5B 86.640 756 68 21 4085 4816 506312310 506311564 0.000000e+00 806.0
5 TraesCS5A01G320500 chr5B 87.983 233 15 10 1706 1933 506314685 506314461 3.700000e-66 263.0
6 TraesCS5A01G320500 chr5B 82.329 249 37 5 7 253 439449740 439449497 4.880000e-50 209.0
7 TraesCS5A01G320500 chr5D 85.883 1523 96 33 4 1495 418937092 418935658 0.000000e+00 1511.0
8 TraesCS5A01G320500 chr5D 90.821 926 66 4 3107 4029 418933762 418932853 0.000000e+00 1221.0
9 TraesCS5A01G320500 chr5D 88.616 896 70 12 2154 3020 418934738 418933846 0.000000e+00 1061.0
10 TraesCS5A01G320500 chr5D 86.526 757 65 19 4085 4816 418932854 418932110 0.000000e+00 798.0
11 TraesCS5A01G320500 chr5D 90.444 450 23 7 1486 1923 418935466 418935025 4.180000e-160 575.0
12 TraesCS5A01G320500 chr5D 92.727 165 12 0 1990 2154 418935007 418934843 6.230000e-59 239.0
13 TraesCS5A01G320500 chr3D 83.333 258 38 2 1 257 43721794 43721541 2.900000e-57 233.0
14 TraesCS5A01G320500 chr7A 82.308 260 36 6 4 258 5855437 5855183 2.920000e-52 217.0
15 TraesCS5A01G320500 chr7A 80.645 279 45 7 996 1269 12429652 12429378 1.760000e-49 207.0
16 TraesCS5A01G320500 chr2D 81.783 258 42 3 1 257 642813820 642813567 1.360000e-50 211.0
17 TraesCS5A01G320500 chr4A 80.727 275 45 5 999 1269 724782634 724782904 1.760000e-49 207.0
18 TraesCS5A01G320500 chr4A 80.297 269 41 7 4 267 124811201 124811462 4.920000e-45 193.0
19 TraesCS5A01G320500 chr4A 100.000 28 0 0 1930 1957 741428533 741428560 9.000000e-03 52.8
20 TraesCS5A01G320500 chr3A 82.305 243 34 5 1 241 158163592 158163827 8.170000e-48 202.0
21 TraesCS5A01G320500 chr3A 100.000 28 0 0 1933 1960 365287797 365287770 9.000000e-03 52.8
22 TraesCS5A01G320500 chr6A 82.479 234 36 2 19 251 11128258 11128029 2.940000e-47 200.0
23 TraesCS5A01G320500 chr6A 79.104 268 49 7 1001 1266 421102766 421103028 1.380000e-40 178.0
24 TraesCS5A01G320500 chr6D 80.315 254 41 8 1016 1266 298207265 298207018 2.960000e-42 183.0
25 TraesCS5A01G320500 chr6D 79.842 253 44 6 1016 1266 298444793 298444546 1.380000e-40 178.0
26 TraesCS5A01G320500 chr6B 80.315 254 41 8 1016 1266 461961849 461961602 2.960000e-42 183.0
27 TraesCS5A01G320500 chr1D 81.223 229 36 7 1043 1269 364625230 364625007 1.380000e-40 178.0
28 TraesCS5A01G320500 chr1D 87.097 62 5 3 1933 1993 392573894 392573953 3.110000e-07 67.6
29 TraesCS5A01G320500 chr7B 83.824 68 8 3 1934 1999 377322913 377322979 1.450000e-05 62.1
30 TraesCS5A01G320500 chr7B 100.000 30 0 0 1959 1988 33921364 33921335 6.730000e-04 56.5
31 TraesCS5A01G320500 chr4B 100.000 28 0 0 1933 1960 131359813 131359840 9.000000e-03 52.8
32 TraesCS5A01G320500 chr2B 94.118 34 2 0 1927 1960 86681052 86681085 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G320500 chr5A 533552825 533557640 4815 True 8894.000000 8894 100.0000 1 4816 1 chr5A.!!$R1 4815
1 TraesCS5A01G320500 chr5B 506311564 506316492 4928 True 1121.800000 2098 88.9922 1 4816 5 chr5B.!!$R2 4815
2 TraesCS5A01G320500 chr5D 418932110 418937092 4982 True 900.833333 1511 89.1695 4 4816 6 chr5D.!!$R1 4812

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
858 881 1.059692 CACTGTTCGATCGATGTGCAC 59.940 52.381 20.18 14.04 0.00 4.57 F
1706 2060 0.035458 GGTGTGAGCTACAAGGCAGT 59.965 55.000 0.00 0.00 41.89 4.40 F
2524 3017 0.176680 CCAGCAGCCACCAGTAGTAG 59.823 60.000 0.00 0.00 0.00 2.57 F
3334 4022 0.320374 ATTGACCCGATCACACACGT 59.680 50.000 0.00 0.00 36.92 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2538 3031 0.467290 GGGTTTTCCTCAGCCACACA 60.467 55.0 0.00 0.0 40.46 3.72 R
3435 4123 0.038892 GTGTCCTGTTGCTGGCATTG 60.039 55.0 0.00 0.0 0.00 2.82 R
3512 4200 0.446222 CGGTGTTTGTGCCCGATAAG 59.554 55.0 0.00 0.0 44.41 1.73 R
4519 5224 2.645838 ACTCAAGTGAAGCACCACAT 57.354 45.0 10.45 0.0 39.42 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 1.733526 GGTTGCTGTTTTGGAGCGT 59.266 52.632 0.00 0.00 39.47 5.07
38 39 1.335496 GGTTGCTGTTTTGGAGCGTTA 59.665 47.619 0.00 0.00 39.47 3.18
47 48 1.919240 TTGGAGCGTTAGTCCTCTGA 58.081 50.000 0.00 0.00 34.86 3.27
58 59 1.127343 GTCCTCTGAGGCCTTAGCAT 58.873 55.000 19.61 0.00 42.56 3.79
70 71 2.678190 GCCTTAGCATGACGACTTTCCT 60.678 50.000 0.00 0.00 39.53 3.36
85 86 6.658391 ACGACTTTCCTACTGTCTACTACAAT 59.342 38.462 0.00 0.00 37.74 2.71
96 97 5.493809 TGTCTACTACAATAAGGTTTGCCC 58.506 41.667 0.00 0.00 34.29 5.36
110 111 3.928779 GCCCGGCTCCGATGATGA 61.929 66.667 10.28 0.00 42.83 2.92
115 116 1.599240 GGCTCCGATGATGAAGGGC 60.599 63.158 0.00 0.00 0.00 5.19
164 166 3.364764 GCTCTAGTGTTTGTAGTCGTCGT 60.365 47.826 0.00 0.00 0.00 4.34
176 178 2.996631 AGTCGTCGTTAGGTGGTCTAT 58.003 47.619 0.00 0.00 0.00 1.98
177 179 4.142609 AGTCGTCGTTAGGTGGTCTATA 57.857 45.455 0.00 0.00 0.00 1.31
181 183 4.125703 CGTCGTTAGGTGGTCTATAGACT 58.874 47.826 27.68 13.74 44.20 3.24
215 217 5.945466 TTTATTCGGGTGTTCTTTGTACC 57.055 39.130 0.00 0.00 0.00 3.34
346 349 5.584253 TTTCTACCTTCCGATTGAGAGAG 57.416 43.478 0.00 0.00 0.00 3.20
352 355 4.148838 CCTTCCGATTGAGAGAGGTAGAT 58.851 47.826 0.00 0.00 0.00 1.98
361 364 9.058174 CGATTGAGAGAGGTAGATTACTCTTAA 57.942 37.037 0.00 0.00 43.71 1.85
382 385 1.848652 AGCGACGGCATATATACCCT 58.151 50.000 0.00 0.00 43.41 4.34
388 391 5.047847 CGACGGCATATATACCCTAATTGG 58.952 45.833 0.00 0.00 0.00 3.16
392 395 5.065988 CGGCATATATACCCTAATTGGCAAC 59.934 44.000 0.00 0.00 0.00 4.17
441 448 3.181507 CCAATCTACTTTCGTGGCATGTG 60.182 47.826 6.60 1.51 0.00 3.21
442 449 1.438651 TCTACTTTCGTGGCATGTGC 58.561 50.000 6.60 0.00 41.14 4.57
445 452 2.113860 ACTTTCGTGGCATGTGCTAT 57.886 45.000 6.60 0.00 41.70 2.97
446 453 2.436417 ACTTTCGTGGCATGTGCTATT 58.564 42.857 6.60 0.00 41.70 1.73
447 454 3.605634 ACTTTCGTGGCATGTGCTATTA 58.394 40.909 6.60 0.00 41.70 0.98
448 455 3.623060 ACTTTCGTGGCATGTGCTATTAG 59.377 43.478 6.60 0.00 41.70 1.73
524 531 6.429078 GTCTCCAGTATCGGTATGTATACACA 59.571 42.308 7.96 0.00 39.52 3.72
566 573 2.046314 AACACCCAAGCCGATCGG 60.046 61.111 30.03 30.03 38.57 4.18
624 632 4.547532 GAAACAGAAACTGCGAGAGACTA 58.452 43.478 0.00 0.00 34.37 2.59
682 690 4.081972 AGCAAGGTGTACAGTATGAGAGTG 60.082 45.833 0.00 0.00 39.69 3.51
688 696 4.459685 GTGTACAGTATGAGAGTGGTGTCT 59.540 45.833 0.00 0.00 39.69 3.41
793 816 1.581954 CTAGCCTATGGACGGAGCG 59.418 63.158 0.00 0.00 0.00 5.03
794 817 2.479412 CTAGCCTATGGACGGAGCGC 62.479 65.000 0.00 0.00 0.00 5.92
811 834 5.560375 CGGAGCGCTATATATATACACGCTT 60.560 44.000 30.08 21.06 43.34 4.68
858 881 1.059692 CACTGTTCGATCGATGTGCAC 59.940 52.381 20.18 14.04 0.00 4.57
937 974 2.351276 CCGAGGAAGGGGTTGGTG 59.649 66.667 0.00 0.00 0.00 4.17
995 1045 2.739784 CAGCAGCGGGAGATAGGG 59.260 66.667 0.00 0.00 0.00 3.53
1273 1323 1.762957 AGCTCGGCAACAGGTACATAT 59.237 47.619 0.00 0.00 0.00 1.78
1274 1324 2.135933 GCTCGGCAACAGGTACATATC 58.864 52.381 0.00 0.00 0.00 1.63
1306 1362 4.100344 TCCCACGTACTTGCATGTACATAT 59.900 41.667 30.85 18.74 41.92 1.78
1307 1363 4.211164 CCCACGTACTTGCATGTACATATG 59.789 45.833 30.85 25.33 41.92 1.78
1334 1391 3.883669 AGGGAAAATGCATGAGAGTCTC 58.116 45.455 13.56 13.56 0.00 3.36
1336 1393 3.614092 GGAAAATGCATGAGAGTCTCCA 58.386 45.455 17.57 8.72 0.00 3.86
1337 1394 3.376546 GGAAAATGCATGAGAGTCTCCAC 59.623 47.826 17.57 7.37 0.00 4.02
1338 1395 3.708403 AAATGCATGAGAGTCTCCACA 57.292 42.857 17.57 12.61 0.00 4.17
1339 1396 3.928005 AATGCATGAGAGTCTCCACAT 57.072 42.857 17.57 14.19 0.00 3.21
1340 1397 2.685850 TGCATGAGAGTCTCCACATG 57.314 50.000 22.62 22.62 41.72 3.21
1342 1399 2.685850 CATGAGAGTCTCCACATGCA 57.314 50.000 17.57 0.00 34.76 3.96
1343 1400 3.195471 CATGAGAGTCTCCACATGCAT 57.805 47.619 17.57 0.00 34.76 3.96
1344 1401 2.685850 TGAGAGTCTCCACATGCATG 57.314 50.000 25.09 25.09 0.00 4.06
1347 1404 0.731417 GAGTCTCCACATGCATGCAC 59.269 55.000 25.37 14.45 0.00 4.57
1375 1432 4.683320 GCATATATGGATCGATGATCACGG 59.317 45.833 14.51 3.69 40.50 4.94
1384 1441 3.267483 TCGATGATCACGGAGCGATATA 58.733 45.455 14.72 0.00 24.82 0.86
1385 1442 3.309954 TCGATGATCACGGAGCGATATAG 59.690 47.826 14.72 0.00 24.82 1.31
1407 1464 2.769095 GGTGGTCTGAAGCTTATCCTCT 59.231 50.000 0.00 0.00 0.00 3.69
1518 1776 4.069304 CACGAAAAGGACCTGACCAATAA 58.931 43.478 0.00 0.00 0.00 1.40
1551 1813 1.133199 AGCTAGCCAGAGAGTAGCCAT 60.133 52.381 12.13 0.00 40.11 4.40
1581 1843 6.844097 TGTCGCCATGATGTATATAGGTTA 57.156 37.500 0.00 0.00 0.00 2.85
1584 1846 8.410912 TGTCGCCATGATGTATATAGGTTATAC 58.589 37.037 0.00 0.00 0.00 1.47
1588 1850 9.534565 GCCATGATGTATATAGGTTATACTGTG 57.465 37.037 0.00 0.00 32.98 3.66
1597 1859 4.985538 AGGTTATACTGTGAAGTCTCCG 57.014 45.455 0.00 0.00 0.00 4.63
1601 1871 2.174363 TACTGTGAAGTCTCCGTCGA 57.826 50.000 0.00 0.00 0.00 4.20
1703 2057 2.391389 GCGGTGTGAGCTACAAGGC 61.391 63.158 0.00 0.00 41.89 4.35
1705 2059 1.016130 CGGTGTGAGCTACAAGGCAG 61.016 60.000 0.00 0.00 41.89 4.85
1706 2060 0.035458 GGTGTGAGCTACAAGGCAGT 59.965 55.000 0.00 0.00 41.89 4.40
1707 2061 1.275291 GGTGTGAGCTACAAGGCAGTA 59.725 52.381 0.00 0.00 41.89 2.74
1708 2062 2.093447 GGTGTGAGCTACAAGGCAGTAT 60.093 50.000 0.00 0.00 41.89 2.12
1763 2117 2.873133 ACGTAGCTGGAATGCTAGAC 57.127 50.000 0.00 0.00 44.93 2.59
1839 2196 6.775629 GGGAATTATTAGCCACCACTGAAATA 59.224 38.462 0.00 0.00 0.00 1.40
1840 2197 7.286775 GGGAATTATTAGCCACCACTGAAATAA 59.713 37.037 0.00 0.00 0.00 1.40
1841 2198 8.860088 GGAATTATTAGCCACCACTGAAATAAT 58.140 33.333 0.00 0.00 33.27 1.28
1865 2222 8.974292 ATATATATGGGAGTGGTGACTTAAGT 57.026 34.615 8.13 8.13 30.16 2.24
1915 2272 5.046910 ACATGTTATTTCCGTTGAGCAAG 57.953 39.130 0.00 0.00 0.00 4.01
1933 2290 8.397575 TGAGCAAGTAATAGAATCGAGTATCT 57.602 34.615 0.00 0.00 0.00 1.98
1934 2291 9.503399 TGAGCAAGTAATAGAATCGAGTATCTA 57.497 33.333 7.56 7.56 33.00 1.98
1936 2293 9.509956 AGCAAGTAATAGAATCGAGTATCTACT 57.490 33.333 7.34 2.90 39.71 2.57
1946 2303 3.775261 GAGTATCTACTCCCTCCGTCT 57.225 52.381 6.15 0.00 45.33 4.18
1947 2304 3.667360 GAGTATCTACTCCCTCCGTCTC 58.333 54.545 6.15 0.00 45.33 3.36
1948 2305 3.047115 AGTATCTACTCCCTCCGTCTCA 58.953 50.000 0.00 0.00 0.00 3.27
1949 2306 2.351706 ATCTACTCCCTCCGTCTCAC 57.648 55.000 0.00 0.00 0.00 3.51
1950 2307 0.989602 TCTACTCCCTCCGTCTCACA 59.010 55.000 0.00 0.00 0.00 3.58
1951 2308 1.353358 TCTACTCCCTCCGTCTCACAA 59.647 52.381 0.00 0.00 0.00 3.33
1952 2309 2.025226 TCTACTCCCTCCGTCTCACAAT 60.025 50.000 0.00 0.00 0.00 2.71
1953 2310 2.526888 ACTCCCTCCGTCTCACAATA 57.473 50.000 0.00 0.00 0.00 1.90
1954 2311 3.033659 ACTCCCTCCGTCTCACAATAT 57.966 47.619 0.00 0.00 0.00 1.28
1955 2312 4.180377 ACTCCCTCCGTCTCACAATATA 57.820 45.455 0.00 0.00 0.00 0.86
1956 2313 4.543689 ACTCCCTCCGTCTCACAATATAA 58.456 43.478 0.00 0.00 0.00 0.98
1957 2314 4.585162 ACTCCCTCCGTCTCACAATATAAG 59.415 45.833 0.00 0.00 0.00 1.73
1958 2315 4.800023 TCCCTCCGTCTCACAATATAAGA 58.200 43.478 0.00 0.00 0.00 2.10
1959 2316 5.205821 TCCCTCCGTCTCACAATATAAGAA 58.794 41.667 0.00 0.00 0.00 2.52
1960 2317 5.659525 TCCCTCCGTCTCACAATATAAGAAA 59.340 40.000 0.00 0.00 0.00 2.52
1961 2318 6.155565 TCCCTCCGTCTCACAATATAAGAAAA 59.844 38.462 0.00 0.00 0.00 2.29
1962 2319 6.821665 CCCTCCGTCTCACAATATAAGAAAAA 59.178 38.462 0.00 0.00 0.00 1.94
1963 2320 7.201617 CCCTCCGTCTCACAATATAAGAAAAAC 60.202 40.741 0.00 0.00 0.00 2.43
1964 2321 7.333423 CCTCCGTCTCACAATATAAGAAAAACA 59.667 37.037 0.00 0.00 0.00 2.83
1965 2322 8.610248 TCCGTCTCACAATATAAGAAAAACAA 57.390 30.769 0.00 0.00 0.00 2.83
1966 2323 9.226606 TCCGTCTCACAATATAAGAAAAACAAT 57.773 29.630 0.00 0.00 0.00 2.71
1967 2324 9.490663 CCGTCTCACAATATAAGAAAAACAATC 57.509 33.333 0.00 0.00 0.00 2.67
1983 2340 9.931210 GAAAAACAATCTTATATTGTAGGACGG 57.069 33.333 3.96 0.00 40.94 4.79
1984 2341 9.675464 AAAAACAATCTTATATTGTAGGACGGA 57.325 29.630 3.96 0.00 40.94 4.69
1985 2342 8.888579 AAACAATCTTATATTGTAGGACGGAG 57.111 34.615 3.96 0.00 40.94 4.63
1986 2343 6.994221 ACAATCTTATATTGTAGGACGGAGG 58.006 40.000 1.65 0.00 40.12 4.30
1987 2344 6.014499 ACAATCTTATATTGTAGGACGGAGGG 60.014 42.308 1.65 0.00 40.12 4.30
1988 2345 5.329191 TCTTATATTGTAGGACGGAGGGA 57.671 43.478 0.00 0.00 0.00 4.20
1992 2349 2.905415 TTGTAGGACGGAGGGAGTAA 57.095 50.000 0.00 0.00 0.00 2.24
2046 2403 4.346418 ACTGGAAATTGTAAAACCATGGCA 59.654 37.500 13.04 0.00 30.12 4.92
2069 2426 8.345565 GGCAAAATATGTCATCGAAGAATAAGT 58.654 33.333 0.00 0.00 43.58 2.24
2098 2455 0.392461 TGGTGACCTATTGCCTTCGC 60.392 55.000 2.11 0.00 0.00 4.70
2100 2457 1.668419 GTGACCTATTGCCTTCGCAT 58.332 50.000 0.00 0.00 46.67 4.73
2130 2487 2.490509 TGACCTACGTGTACCACTGATG 59.509 50.000 0.00 0.00 31.34 3.07
2163 2625 5.066634 ACACGAACTGATGTAGATAGGACAG 59.933 44.000 0.00 0.00 0.00 3.51
2168 2630 7.433719 CGAACTGATGTAGATAGGACAGAAAAG 59.566 40.741 0.00 0.00 0.00 2.27
2169 2631 7.118496 ACTGATGTAGATAGGACAGAAAAGG 57.882 40.000 0.00 0.00 0.00 3.11
2170 2632 6.897966 ACTGATGTAGATAGGACAGAAAAGGA 59.102 38.462 0.00 0.00 0.00 3.36
2171 2633 7.400339 ACTGATGTAGATAGGACAGAAAAGGAA 59.600 37.037 0.00 0.00 0.00 3.36
2172 2634 7.556844 TGATGTAGATAGGACAGAAAAGGAAC 58.443 38.462 0.00 0.00 0.00 3.62
2174 2636 8.840200 ATGTAGATAGGACAGAAAAGGAACTA 57.160 34.615 0.00 0.00 38.49 2.24
2175 2637 8.840200 TGTAGATAGGACAGAAAAGGAACTAT 57.160 34.615 0.00 0.00 38.49 2.12
2185 2647 2.403252 AAGGAACTATGGCGGAACAG 57.597 50.000 0.00 0.00 38.49 3.16
2193 2655 2.715749 ATGGCGGAACAGATGAATGA 57.284 45.000 0.00 0.00 0.00 2.57
2208 2670 7.145985 CAGATGAATGATCCTTAATGCAAAGG 58.854 38.462 10.48 10.48 46.35 3.11
2231 2700 5.700722 CATAGCTCATGCCATGTTTGTAT 57.299 39.130 4.31 0.00 40.80 2.29
2277 2746 5.391312 AGCAACTAATTCATGTCCCAAAC 57.609 39.130 0.00 0.00 0.00 2.93
2311 2782 2.821437 TGTTGGTCTAGCTCTAGCCTT 58.179 47.619 14.14 0.00 43.38 4.35
2353 2824 0.318441 TCAGTATATGCAGAGGCCGC 59.682 55.000 0.00 0.00 40.13 6.53
2356 2827 2.942796 TATATGCAGAGGCCGCGGG 61.943 63.158 29.38 11.04 40.13 6.13
2375 2846 1.067142 GGAATCCCCTTTCCGCAAAAC 60.067 52.381 0.00 0.00 36.12 2.43
2454 2946 5.914898 AAATTCCAGCAATAACCACTACC 57.085 39.130 0.00 0.00 0.00 3.18
2480 2973 9.617975 CTTTTCTTTTTCTTGTATCCATCACTC 57.382 33.333 0.00 0.00 0.00 3.51
2483 2976 7.679783 TCTTTTTCTTGTATCCATCACTCTCA 58.320 34.615 0.00 0.00 0.00 3.27
2524 3017 0.176680 CCAGCAGCCACCAGTAGTAG 59.823 60.000 0.00 0.00 0.00 2.57
2553 3046 0.770499 TCCATGTGTGGCTGAGGAAA 59.230 50.000 0.00 0.00 45.63 3.13
2573 3066 3.372440 AACCCTAAGCCTTGGATTCAG 57.628 47.619 0.00 0.00 0.00 3.02
2595 3088 0.465097 ATGGAAAGCATCGCCCTCAG 60.465 55.000 0.00 0.00 0.00 3.35
2663 3157 5.836898 TCTCTCACTCTACCAACCACTTTTA 59.163 40.000 0.00 0.00 0.00 1.52
2692 3186 7.994425 TTTGTCATTGATAAAAGGCTACTCA 57.006 32.000 6.15 0.00 0.00 3.41
2702 3196 7.766278 TGATAAAAGGCTACTCAGCTTTAAGAG 59.234 37.037 0.00 0.00 45.57 2.85
2768 3263 4.080015 TGGTACTTCCATATCCCCAAGTTG 60.080 45.833 0.00 0.00 41.93 3.16
2770 3265 4.675063 ACTTCCATATCCCCAAGTTGTT 57.325 40.909 1.45 0.00 0.00 2.83
2835 3330 8.188139 GCTAGTTAAAAAGGCATGCATAGTAAA 58.812 33.333 21.36 3.83 0.00 2.01
2866 3361 6.928979 TCAACGTTAGAAAGAAACCATGAA 57.071 33.333 0.00 0.00 0.00 2.57
2871 3366 6.710744 ACGTTAGAAAGAAACCATGAATCAGT 59.289 34.615 0.00 0.00 0.00 3.41
2891 3386 1.267806 TGACAAGGACGAACGTACTCC 59.732 52.381 12.50 4.19 38.57 3.85
2909 3404 5.874895 ACTCCGTTGGCTTTAATTCTTAC 57.125 39.130 0.00 0.00 0.00 2.34
2920 3415 9.135189 TGGCTTTAATTCTTACATAAGCATCAT 57.865 29.630 0.00 0.00 39.66 2.45
2944 3439 6.351711 TGTTTGCATGATGCTCTAATAGTCT 58.648 36.000 19.19 0.00 45.31 3.24
3001 3656 7.990314 TCGATTATGTTTTGGAAGATATGGACA 59.010 33.333 0.00 0.00 0.00 4.02
3077 3763 9.804758 TTTAAAATGTTTTCCGTGACAAATACT 57.195 25.926 0.00 0.00 0.00 2.12
3080 3766 9.974980 AAAATGTTTTCCGTGACAAATACTATT 57.025 25.926 0.00 0.00 0.00 1.73
3081 3767 9.974980 AAATGTTTTCCGTGACAAATACTATTT 57.025 25.926 0.00 0.00 0.00 1.40
3082 3768 9.974980 AATGTTTTCCGTGACAAATACTATTTT 57.025 25.926 0.00 0.00 0.00 1.82
3083 3769 9.974980 ATGTTTTCCGTGACAAATACTATTTTT 57.025 25.926 0.00 0.00 0.00 1.94
3084 3770 9.239002 TGTTTTCCGTGACAAATACTATTTTTG 57.761 29.630 0.00 0.00 39.43 2.44
3085 3771 8.696175 GTTTTCCGTGACAAATACTATTTTTGG 58.304 33.333 0.00 0.00 38.18 3.28
3086 3772 5.945155 TCCGTGACAAATACTATTTTTGGC 58.055 37.500 0.00 0.00 41.53 4.52
3087 3773 4.791163 CCGTGACAAATACTATTTTTGGCG 59.209 41.667 0.00 0.00 43.61 5.69
3088 3774 4.791163 CGTGACAAATACTATTTTTGGCGG 59.209 41.667 0.00 0.00 43.61 6.13
3089 3775 5.618195 CGTGACAAATACTATTTTTGGCGGT 60.618 40.000 0.00 0.00 43.61 5.68
3090 3776 5.798434 GTGACAAATACTATTTTTGGCGGTC 59.202 40.000 0.00 0.00 43.61 4.79
3091 3777 5.473846 TGACAAATACTATTTTTGGCGGTCA 59.526 36.000 6.23 6.23 43.61 4.02
3092 3778 6.016192 TGACAAATACTATTTTTGGCGGTCAA 60.016 34.615 0.00 0.00 43.61 3.18
3093 3779 6.930731 ACAAATACTATTTTTGGCGGTCAAT 58.069 32.000 0.00 0.00 38.18 2.57
3094 3780 6.811170 ACAAATACTATTTTTGGCGGTCAATG 59.189 34.615 0.00 0.00 38.18 2.82
3095 3781 3.230743 ACTATTTTTGGCGGTCAATGC 57.769 42.857 0.00 0.00 34.98 3.56
3096 3782 2.560542 ACTATTTTTGGCGGTCAATGCA 59.439 40.909 0.00 0.00 34.98 3.96
3097 3783 2.083167 ATTTTTGGCGGTCAATGCAG 57.917 45.000 0.00 0.00 34.98 4.41
3098 3784 1.035923 TTTTTGGCGGTCAATGCAGA 58.964 45.000 0.00 0.00 34.98 4.26
3099 3785 1.255882 TTTTGGCGGTCAATGCAGAT 58.744 45.000 0.00 0.00 34.98 2.90
3100 3786 2.121291 TTTGGCGGTCAATGCAGATA 57.879 45.000 0.00 0.00 34.98 1.98
3101 3787 2.121291 TTGGCGGTCAATGCAGATAA 57.879 45.000 0.00 0.00 0.00 1.75
3102 3788 2.346766 TGGCGGTCAATGCAGATAAT 57.653 45.000 0.00 0.00 0.00 1.28
3105 3791 4.203226 TGGCGGTCAATGCAGATAATTTA 58.797 39.130 0.00 0.00 0.00 1.40
3179 3867 9.503427 GCTTTTGTCTATTTTCCATATGTGTAC 57.497 33.333 1.24 0.00 0.00 2.90
3227 3915 2.492012 GCTCTATGCAGATGGTCCAAG 58.508 52.381 0.00 0.00 42.31 3.61
3272 3960 7.435784 GGAAGGACAGATAACGAGATTAAGAAC 59.564 40.741 0.00 0.00 0.00 3.01
3334 4022 0.320374 ATTGACCCGATCACACACGT 59.680 50.000 0.00 0.00 36.92 4.49
3359 4047 2.730672 CGAAGTCCGAAAGCAGCCG 61.731 63.158 0.00 0.00 41.76 5.52
3455 4143 1.181098 AATGCCAGCAACAGGACACC 61.181 55.000 0.00 0.00 0.00 4.16
3464 4152 1.608590 CAACAGGACACCCACATCAAC 59.391 52.381 0.00 0.00 33.88 3.18
3510 4198 3.138798 GCGAGTCTAGCCCACCGA 61.139 66.667 0.00 0.00 0.00 4.69
3512 4200 1.139095 CGAGTCTAGCCCACCGAAC 59.861 63.158 0.00 0.00 0.00 3.95
3556 4244 3.919163 CTACGGGTGGTAGCAACAA 57.081 52.632 12.80 0.00 42.02 2.83
3566 4254 3.696051 GTGGTAGCAACAACATCCATGAT 59.304 43.478 0.00 0.00 29.05 2.45
3584 4272 5.163269 CCATGATCAGGATCCACTAGTGAAA 60.163 44.000 24.68 12.09 37.02 2.69
3599 4287 1.471684 GTGAAATGGCTGCTGGAAGAG 59.528 52.381 0.00 0.00 34.07 2.85
3681 4369 7.379262 TCGAAAATGATGTTGACAAGTTCAATG 59.621 33.333 4.57 0.00 46.14 2.82
3689 4377 2.562298 TGACAAGTTCAATGGCATTCCC 59.438 45.455 10.36 0.98 28.68 3.97
3692 4380 2.149973 AGTTCAATGGCATTCCCTCC 57.850 50.000 10.36 0.00 0.00 4.30
3693 4381 1.358787 AGTTCAATGGCATTCCCTCCA 59.641 47.619 10.36 0.00 36.70 3.86
3761 4449 1.920351 GATTTTGGGGTAGGGGACTCA 59.080 52.381 0.00 0.00 43.67 3.41
3763 4451 1.069775 TTTGGGGTAGGGGACTCAAC 58.930 55.000 0.00 0.00 43.67 3.18
3773 4461 2.108952 AGGGGACTCAACTTTGCTTGAT 59.891 45.455 0.00 0.00 32.90 2.57
3800 4488 1.364626 CCATGGTCGACAGCTCAAGC 61.365 60.000 18.91 0.00 42.49 4.01
3820 4508 4.024670 AGCGGATCAAACCTCTAGTAGTT 58.975 43.478 0.00 0.00 0.00 2.24
3853 4541 4.037858 AGCTTGCAAACAACTGAAGAAG 57.962 40.909 0.00 0.00 0.00 2.85
3898 4586 6.632035 GTCGTACATAGTGTAGATAAGTGCAC 59.368 42.308 9.40 9.40 32.84 4.57
3917 4605 8.647143 AGTGCACCAATTAATAAAATATGTGC 57.353 30.769 14.63 13.38 44.94 4.57
3918 4606 8.477256 AGTGCACCAATTAATAAAATATGTGCT 58.523 29.630 14.63 4.54 44.96 4.40
3919 4607 8.755018 GTGCACCAATTAATAAAATATGTGCTC 58.245 33.333 5.22 13.46 44.96 4.26
3920 4608 7.647318 TGCACCAATTAATAAAATATGTGCTCG 59.353 33.333 17.76 0.00 44.96 5.03
3921 4609 7.647715 GCACCAATTAATAAAATATGTGCTCGT 59.352 33.333 13.15 0.00 42.31 4.18
3931 4619 9.950680 ATAAAATATGTGCTCGTTTAAATCCAG 57.049 29.630 0.00 0.00 0.00 3.86
3942 4630 8.234546 GCTCGTTTAAATCCAGTTAATTCTTGA 58.765 33.333 0.00 0.00 0.00 3.02
3984 4672 8.547967 AAGGTGTAGAATAGTGTTATGTGTTG 57.452 34.615 0.00 0.00 0.00 3.33
4027 4715 4.653341 TCAAGGGGTGAATCAAATTGTGTT 59.347 37.500 0.00 0.00 31.51 3.32
4028 4716 5.835819 TCAAGGGGTGAATCAAATTGTGTTA 59.164 36.000 0.00 0.00 31.51 2.41
4029 4717 5.722021 AGGGGTGAATCAAATTGTGTTAC 57.278 39.130 0.00 0.00 0.00 2.50
4030 4718 5.393866 AGGGGTGAATCAAATTGTGTTACT 58.606 37.500 0.00 0.00 0.00 2.24
4031 4719 5.476945 AGGGGTGAATCAAATTGTGTTACTC 59.523 40.000 0.00 0.00 0.00 2.59
4032 4720 5.242838 GGGGTGAATCAAATTGTGTTACTCA 59.757 40.000 0.00 0.00 0.00 3.41
4033 4721 6.381801 GGGTGAATCAAATTGTGTTACTCAG 58.618 40.000 0.00 0.00 0.00 3.35
4034 4722 6.206634 GGGTGAATCAAATTGTGTTACTCAGA 59.793 38.462 0.00 0.00 0.00 3.27
4035 4723 7.094205 GGGTGAATCAAATTGTGTTACTCAGAT 60.094 37.037 0.00 0.00 0.00 2.90
4036 4724 7.965107 GGTGAATCAAATTGTGTTACTCAGATC 59.035 37.037 0.00 0.00 0.00 2.75
4037 4725 7.965107 GTGAATCAAATTGTGTTACTCAGATCC 59.035 37.037 0.00 0.00 0.00 3.36
4038 4726 7.665145 TGAATCAAATTGTGTTACTCAGATCCA 59.335 33.333 0.00 0.00 0.00 3.41
4039 4727 6.801539 TCAAATTGTGTTACTCAGATCCAC 57.198 37.500 0.00 0.00 0.00 4.02
4040 4728 6.295249 TCAAATTGTGTTACTCAGATCCACA 58.705 36.000 0.00 0.00 34.47 4.17
4041 4729 6.770303 TCAAATTGTGTTACTCAGATCCACAA 59.230 34.615 11.98 11.98 46.40 3.33
4042 4730 7.284261 TCAAATTGTGTTACTCAGATCCACAAA 59.716 33.333 13.13 0.00 45.75 2.83
4043 4731 6.808008 ATTGTGTTACTCAGATCCACAAAG 57.192 37.500 13.13 0.00 45.75 2.77
4044 4732 5.290493 TGTGTTACTCAGATCCACAAAGT 57.710 39.130 0.00 0.00 33.44 2.66
4045 4733 5.680619 TGTGTTACTCAGATCCACAAAGTT 58.319 37.500 0.00 0.00 33.44 2.66
4046 4734 5.527214 TGTGTTACTCAGATCCACAAAGTTG 59.473 40.000 0.00 0.00 33.44 3.16
4047 4735 5.527582 GTGTTACTCAGATCCACAAAGTTGT 59.472 40.000 0.00 0.00 43.36 3.32
4048 4736 6.704493 GTGTTACTCAGATCCACAAAGTTGTA 59.296 38.462 0.00 0.00 39.91 2.41
4049 4737 6.704493 TGTTACTCAGATCCACAAAGTTGTAC 59.296 38.462 0.00 0.00 39.91 2.90
4050 4738 5.552870 ACTCAGATCCACAAAGTTGTACT 57.447 39.130 0.00 0.00 39.91 2.73
4051 4739 6.665992 ACTCAGATCCACAAAGTTGTACTA 57.334 37.500 0.00 0.00 39.91 1.82
4052 4740 6.692486 ACTCAGATCCACAAAGTTGTACTAG 58.308 40.000 0.00 0.00 39.91 2.57
4053 4741 6.493802 ACTCAGATCCACAAAGTTGTACTAGA 59.506 38.462 0.00 0.00 39.91 2.43
4054 4742 6.925211 TCAGATCCACAAAGTTGTACTAGAG 58.075 40.000 0.00 0.00 39.91 2.43
4055 4743 6.071334 TCAGATCCACAAAGTTGTACTAGAGG 60.071 42.308 0.00 0.00 39.91 3.69
4056 4744 5.780793 AGATCCACAAAGTTGTACTAGAGGT 59.219 40.000 0.00 0.00 39.91 3.85
4057 4745 5.209818 TCCACAAAGTTGTACTAGAGGTG 57.790 43.478 0.00 0.00 39.91 4.00
4058 4746 3.746492 CCACAAAGTTGTACTAGAGGTGC 59.254 47.826 0.00 0.00 39.91 5.01
4059 4747 3.428870 CACAAAGTTGTACTAGAGGTGCG 59.571 47.826 0.00 0.00 39.91 5.34
4060 4748 3.319972 ACAAAGTTGTACTAGAGGTGCGA 59.680 43.478 0.00 0.00 40.16 5.10
4061 4749 3.572604 AAGTTGTACTAGAGGTGCGAC 57.427 47.619 0.00 0.00 42.72 5.19
4062 4750 2.511659 AGTTGTACTAGAGGTGCGACA 58.488 47.619 0.00 0.00 44.14 4.35
4063 4751 2.488545 AGTTGTACTAGAGGTGCGACAG 59.511 50.000 0.00 0.00 44.14 3.51
4064 4752 2.195741 TGTACTAGAGGTGCGACAGT 57.804 50.000 0.00 0.00 33.14 3.55
4065 4753 2.511659 TGTACTAGAGGTGCGACAGTT 58.488 47.619 0.00 0.00 33.14 3.16
4066 4754 3.678289 TGTACTAGAGGTGCGACAGTTA 58.322 45.455 0.00 0.00 33.14 2.24
4067 4755 4.074259 TGTACTAGAGGTGCGACAGTTAA 58.926 43.478 0.00 0.00 33.14 2.01
4068 4756 4.703575 TGTACTAGAGGTGCGACAGTTAAT 59.296 41.667 0.00 0.00 33.14 1.40
4069 4757 4.803098 ACTAGAGGTGCGACAGTTAATT 57.197 40.909 0.00 0.00 0.00 1.40
4070 4758 5.148651 ACTAGAGGTGCGACAGTTAATTT 57.851 39.130 0.00 0.00 0.00 1.82
4071 4759 4.929808 ACTAGAGGTGCGACAGTTAATTTG 59.070 41.667 0.00 0.00 0.00 2.32
4072 4760 3.074412 AGAGGTGCGACAGTTAATTTGG 58.926 45.455 0.00 0.00 0.00 3.28
4073 4761 3.071479 GAGGTGCGACAGTTAATTTGGA 58.929 45.455 0.00 0.00 0.00 3.53
4074 4762 3.686016 AGGTGCGACAGTTAATTTGGAT 58.314 40.909 0.00 0.00 0.00 3.41
4075 4763 3.689649 AGGTGCGACAGTTAATTTGGATC 59.310 43.478 0.00 0.00 0.00 3.36
4076 4764 3.485216 GGTGCGACAGTTAATTTGGATCG 60.485 47.826 0.00 0.00 0.00 3.69
4077 4765 2.675844 TGCGACAGTTAATTTGGATCGG 59.324 45.455 0.00 0.00 0.00 4.18
4078 4766 2.933906 GCGACAGTTAATTTGGATCGGA 59.066 45.455 0.00 0.00 0.00 4.55
4079 4767 3.560068 GCGACAGTTAATTTGGATCGGAT 59.440 43.478 0.00 0.00 0.00 4.18
4080 4768 4.552767 GCGACAGTTAATTTGGATCGGATG 60.553 45.833 0.00 0.00 0.00 3.51
4081 4769 4.024893 CGACAGTTAATTTGGATCGGATGG 60.025 45.833 0.00 0.00 0.00 3.51
4082 4770 5.110814 ACAGTTAATTTGGATCGGATGGA 57.889 39.130 0.00 0.00 0.00 3.41
4083 4771 5.126067 ACAGTTAATTTGGATCGGATGGAG 58.874 41.667 0.00 0.00 0.00 3.86
4089 4777 9.280174 GTTAATTTGGATCGGATGGAGTATTAA 57.720 33.333 0.00 0.00 0.00 1.40
4168 4858 5.454966 TGTACCTGTATCTAGATGCTTCCA 58.545 41.667 19.81 8.23 0.00 3.53
4265 4955 7.458409 ACAAATACATGATCAAAGTGAGCTT 57.542 32.000 12.85 1.57 33.24 3.74
4267 4957 9.013229 ACAAATACATGATCAAAGTGAGCTTAA 57.987 29.630 12.85 0.00 33.24 1.85
4282 4972 8.089115 AGTGAGCTTAAGTTACAAATTCAGAC 57.911 34.615 4.02 0.00 0.00 3.51
4286 4976 8.396272 AGCTTAAGTTACAAATTCAGACATGT 57.604 30.769 0.00 0.00 0.00 3.21
4299 4989 5.897377 TCAGACATGTATGAGAGAACGAA 57.103 39.130 18.92 0.00 0.00 3.85
4304 4994 6.377429 AGACATGTATGAGAGAACGAAACCTA 59.623 38.462 0.00 0.00 0.00 3.08
4338 5028 4.003648 GGTTCTAAGTTGTAGCAGCACAT 58.996 43.478 0.00 0.00 0.00 3.21
4345 5035 9.613428 TCTAAGTTGTAGCAGCACATATTAAAT 57.387 29.630 0.00 0.00 0.00 1.40
4347 5037 8.915871 AAGTTGTAGCAGCACATATTAAATTG 57.084 30.769 0.00 0.00 0.00 2.32
4348 5038 8.279970 AGTTGTAGCAGCACATATTAAATTGA 57.720 30.769 0.00 0.00 0.00 2.57
4396 5086 5.581085 AGAAGTGCATTTCTACCATAACGAC 59.419 40.000 21.64 0.00 35.70 4.34
4404 5094 7.950496 GCATTTCTACCATAACGACGATAATTC 59.050 37.037 0.00 0.00 0.00 2.17
4412 5102 6.183360 CCATAACGACGATAATTCTTATGGCC 60.183 42.308 14.46 0.00 35.82 5.36
4499 5204 3.630769 TGCATCTTGAAGAGCATGGATTC 59.369 43.478 12.92 0.00 31.05 2.52
4500 5205 3.004524 GCATCTTGAAGAGCATGGATTCC 59.995 47.826 0.00 0.00 0.00 3.01
4519 5224 7.505248 TGGATTCCTAATTGTTTGCTATGCATA 59.495 33.333 6.20 6.20 38.76 3.14
4523 5228 7.650890 TCCTAATTGTTTGCTATGCATATGTG 58.349 34.615 6.92 0.00 38.76 3.21
4530 5235 2.880268 TGCTATGCATATGTGGTGCTTC 59.120 45.455 6.92 0.00 42.92 3.86
4540 5245 0.947244 GTGGTGCTTCACTTGAGTGG 59.053 55.000 10.97 0.00 45.65 4.00
4545 5250 3.189287 GGTGCTTCACTTGAGTGGTAATG 59.811 47.826 10.97 0.00 45.65 1.90
4604 5310 6.441274 AGTTGTTGAGTTCATTGCAGTTATG 58.559 36.000 0.00 0.00 0.00 1.90
4612 5318 4.963276 TCATTGCAGTTATGGTGTAAGC 57.037 40.909 0.00 0.00 0.00 3.09
4615 5321 5.476599 TCATTGCAGTTATGGTGTAAGCTTT 59.523 36.000 3.20 0.00 33.76 3.51
4616 5322 4.764679 TGCAGTTATGGTGTAAGCTTTG 57.235 40.909 3.20 0.00 33.76 2.77
4617 5323 4.141287 TGCAGTTATGGTGTAAGCTTTGT 58.859 39.130 3.20 0.00 33.76 2.83
4618 5324 5.309638 TGCAGTTATGGTGTAAGCTTTGTA 58.690 37.500 3.20 0.00 33.76 2.41
4619 5325 5.943416 TGCAGTTATGGTGTAAGCTTTGTAT 59.057 36.000 3.20 0.00 33.76 2.29
4629 5335 7.937942 TGGTGTAAGCTTTGTATGGTAGTTAAA 59.062 33.333 3.20 0.00 33.76 1.52
4704 5412 9.338622 GTATGTAGGCTTATAAATCCAACAACT 57.661 33.333 0.00 0.00 0.00 3.16
4706 5414 6.537301 TGTAGGCTTATAAATCCAACAACTCG 59.463 38.462 0.00 0.00 0.00 4.18
4709 5417 5.353123 GGCTTATAAATCCAACAACTCGACA 59.647 40.000 0.00 0.00 0.00 4.35
4752 5460 9.593134 GTTGATTAGTCATAAAGATGTCACTCT 57.407 33.333 0.00 0.00 33.56 3.24
4794 5506 4.370364 TCTGTTTGAAAGTTGAGGCAAC 57.630 40.909 2.22 2.22 43.83 4.17
4810 5522 3.588955 GGCAACTCATTGGATGGAAAAC 58.411 45.455 0.00 0.00 36.23 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.819288 CTCAGAGGACTAACGCTCCAA 59.181 52.381 0.00 0.00 0.00 3.53
47 48 0.905357 AAGTCGTCATGCTAAGGCCT 59.095 50.000 0.00 0.00 37.74 5.19
58 59 4.649692 AGTAGACAGTAGGAAAGTCGTCA 58.350 43.478 0.00 0.00 37.36 4.35
70 71 7.325694 GGCAAACCTTATTGTAGTAGACAGTA 58.674 38.462 0.00 0.00 39.88 2.74
85 86 2.353573 GGAGCCGGGCAAACCTTA 59.646 61.111 23.09 0.00 36.97 2.69
96 97 1.301244 CCCTTCATCATCGGAGCCG 60.301 63.158 1.74 1.74 41.35 5.52
146 147 4.515191 ACCTAACGACGACTACAAACACTA 59.485 41.667 0.00 0.00 0.00 2.74
164 166 6.441222 ACATCCAAGTCTATAGACCACCTAA 58.559 40.000 25.93 10.17 45.85 2.69
176 178 9.116067 CCCGAATAAAAATTACATCCAAGTCTA 57.884 33.333 0.00 0.00 0.00 2.59
177 179 7.614192 ACCCGAATAAAAATTACATCCAAGTCT 59.386 33.333 0.00 0.00 0.00 3.24
181 183 7.469537 ACACCCGAATAAAAATTACATCCAA 57.530 32.000 0.00 0.00 0.00 3.53
200 202 1.957668 ACGTGGTACAAAGAACACCC 58.042 50.000 0.00 0.00 44.16 4.61
215 217 7.382488 CCTATTCATCAACTATCAAGGTACGTG 59.618 40.741 0.00 0.00 39.73 4.49
256 258 0.820482 ACCCCGAAGTTTTTCCCGTG 60.820 55.000 0.00 0.00 0.00 4.94
257 259 0.764271 TACCCCGAAGTTTTTCCCGT 59.236 50.000 0.00 0.00 0.00 5.28
259 261 3.615592 GCATTTACCCCGAAGTTTTTCCC 60.616 47.826 0.00 0.00 0.00 3.97
260 262 3.581755 GCATTTACCCCGAAGTTTTTCC 58.418 45.455 0.00 0.00 0.00 3.13
261 263 3.239254 CGCATTTACCCCGAAGTTTTTC 58.761 45.455 0.00 0.00 0.00 2.29
314 317 9.037737 CAATCGGAAGGTAGAAAATAAACGATA 57.962 33.333 0.00 0.00 36.48 2.92
317 320 7.277098 TCTCAATCGGAAGGTAGAAAATAAACG 59.723 37.037 0.00 0.00 0.00 3.60
346 349 6.313252 CCGTCGCTATTAAGAGTAATCTACC 58.687 44.000 0.00 0.00 32.10 3.18
352 355 4.579454 ATGCCGTCGCTATTAAGAGTAA 57.421 40.909 0.00 0.00 35.36 2.24
361 364 3.563223 AGGGTATATATGCCGTCGCTAT 58.437 45.455 13.05 0.00 35.36 2.97
388 391 3.983344 CACTTGGAAGTTGCAATAGTTGC 59.017 43.478 10.46 7.68 46.72 4.17
392 395 5.702670 TCTTCTCACTTGGAAGTTGCAATAG 59.297 40.000 10.46 8.68 40.50 1.73
404 407 6.234177 AGTAGATTGGTTTCTTCTCACTTGG 58.766 40.000 0.00 0.00 0.00 3.61
441 448 5.470047 ACTACTATGTGCCACCTAATAGC 57.530 43.478 0.00 0.00 0.00 2.97
442 449 7.013942 TGTGTACTACTATGTGCCACCTAATAG 59.986 40.741 0.00 0.00 0.00 1.73
445 452 5.018149 TGTGTACTACTATGTGCCACCTAA 58.982 41.667 0.00 0.00 0.00 2.69
446 453 4.602107 TGTGTACTACTATGTGCCACCTA 58.398 43.478 0.00 0.00 0.00 3.08
447 454 3.437213 TGTGTACTACTATGTGCCACCT 58.563 45.455 0.00 0.00 0.00 4.00
448 455 3.880047 TGTGTACTACTATGTGCCACC 57.120 47.619 0.00 0.00 0.00 4.61
524 531 2.661675 CTCGTCACATGTCGAAAACGAT 59.338 45.455 10.42 0.00 38.32 3.73
566 573 2.371910 AGGCTCTTGCTTTACTCGAC 57.628 50.000 0.00 0.00 39.59 4.20
624 632 4.204012 TGCTTTGTACAAAGGCTGTTACT 58.796 39.130 36.90 0.00 45.85 2.24
682 690 1.521450 TTGGTCGTCCGAGAGACACC 61.521 60.000 6.35 7.21 46.69 4.16
688 696 1.863662 GAGCACTTGGTCGTCCGAGA 61.864 60.000 21.09 0.00 45.72 4.04
692 700 1.079750 GAGGAGCACTTGGTCGTCC 60.080 63.158 16.59 0.00 45.93 4.79
720 728 2.766229 GGAGGGAGGAGACAGGCC 60.766 72.222 0.00 0.00 0.00 5.19
772 791 1.887088 GCTCCGTCCATAGGCTAGCTA 60.887 57.143 15.72 5.54 0.00 3.32
773 792 1.182385 GCTCCGTCCATAGGCTAGCT 61.182 60.000 15.72 3.22 0.00 3.32
781 800 7.118825 GTGTATATATATAGCGCTCCGTCCATA 59.881 40.741 16.34 5.30 0.00 2.74
793 816 6.074994 GCAACCGAAGCGTGTATATATATAGC 60.075 42.308 2.53 3.91 0.00 2.97
794 817 6.970613 TGCAACCGAAGCGTGTATATATATAG 59.029 38.462 2.53 0.00 33.85 1.31
1273 1323 4.566004 CAAGTACGTGGGATGAGAAAAGA 58.434 43.478 0.00 0.00 0.00 2.52
1274 1324 3.125316 GCAAGTACGTGGGATGAGAAAAG 59.875 47.826 10.87 0.00 0.00 2.27
1306 1362 2.898612 TCATGCATTTTCCCTTTCTGCA 59.101 40.909 0.00 0.00 45.84 4.41
1307 1363 3.194116 TCTCATGCATTTTCCCTTTCTGC 59.806 43.478 0.00 0.00 0.00 4.26
1347 1404 4.053295 TCATCGATCCATATATGCATGCG 58.947 43.478 14.09 7.91 0.00 4.73
1375 1432 2.515854 TCAGACCACCCTATATCGCTC 58.484 52.381 0.00 0.00 0.00 5.03
1384 1441 1.840635 GGATAAGCTTCAGACCACCCT 59.159 52.381 0.00 0.00 0.00 4.34
1385 1442 1.840635 AGGATAAGCTTCAGACCACCC 59.159 52.381 0.00 0.00 0.00 4.61
1407 1464 4.167502 TCCTGTTCTTACCCTAGCTAGCTA 59.832 45.833 22.85 22.85 0.00 3.32
1518 1776 2.906389 TGGCTAGCTCGATCCCAAATAT 59.094 45.455 15.72 0.00 0.00 1.28
1577 1839 4.670347 GACGGAGACTTCACAGTATAACC 58.330 47.826 0.00 0.00 31.22 2.85
1581 1843 2.708051 TCGACGGAGACTTCACAGTAT 58.292 47.619 0.00 0.00 31.22 2.12
1584 1846 1.530031 CGATCGACGGAGACTTCACAG 60.530 57.143 10.26 0.00 38.46 3.66
1588 1850 0.590230 CAGCGATCGACGGAGACTTC 60.590 60.000 21.57 0.00 42.83 3.01
1595 1857 1.134530 GACTCAACAGCGATCGACGG 61.135 60.000 21.57 13.23 42.83 4.79
1597 1859 0.109272 TGGACTCAACAGCGATCGAC 60.109 55.000 21.57 10.46 0.00 4.20
1601 1871 2.254546 TGTTTGGACTCAACAGCGAT 57.745 45.000 0.00 0.00 31.78 4.58
1703 2057 5.667466 ACCCGAAAAGGTACATACATACTG 58.333 41.667 0.00 0.00 38.79 2.74
1705 2059 6.990341 AAACCCGAAAAGGTACATACATAC 57.010 37.500 0.00 0.00 40.05 2.39
1706 2060 7.664731 TCAAAAACCCGAAAAGGTACATACATA 59.335 33.333 0.00 0.00 40.05 2.29
1707 2061 6.490721 TCAAAAACCCGAAAAGGTACATACAT 59.509 34.615 0.00 0.00 40.05 2.29
1708 2062 5.826737 TCAAAAACCCGAAAAGGTACATACA 59.173 36.000 0.00 0.00 40.05 2.29
1763 2117 2.817901 TGTCACATGCATCGATCTCTG 58.182 47.619 0.00 0.00 0.00 3.35
1839 2196 9.393786 ACTTAAGTCACCACTCCCATATATATT 57.606 33.333 1.12 0.00 29.93 1.28
1840 2197 8.974292 ACTTAAGTCACCACTCCCATATATAT 57.026 34.615 1.12 0.00 29.93 0.86
1841 2198 9.529823 CTACTTAAGTCACCACTCCCATATATA 57.470 37.037 12.39 0.00 29.93 0.86
1842 2199 8.011290 ACTACTTAAGTCACCACTCCCATATAT 58.989 37.037 12.39 0.00 30.33 0.86
1843 2200 7.359849 ACTACTTAAGTCACCACTCCCATATA 58.640 38.462 12.39 0.00 30.33 0.86
1859 2216 4.339814 CAGCAGAGGGGACTACTACTTAAG 59.660 50.000 0.00 0.00 44.43 1.85
1865 2222 0.631753 AGCAGCAGAGGGGACTACTA 59.368 55.000 0.00 0.00 44.43 1.82
1933 2290 2.526888 ATTGTGAGACGGAGGGAGTA 57.473 50.000 0.00 0.00 0.00 2.59
1934 2291 2.526888 TATTGTGAGACGGAGGGAGT 57.473 50.000 0.00 0.00 0.00 3.85
1936 2293 4.800023 TCTTATATTGTGAGACGGAGGGA 58.200 43.478 0.00 0.00 0.00 4.20
1937 2294 5.531122 TTCTTATATTGTGAGACGGAGGG 57.469 43.478 0.00 0.00 0.00 4.30
1938 2295 7.333423 TGTTTTTCTTATATTGTGAGACGGAGG 59.667 37.037 0.00 0.00 0.00 4.30
1939 2296 8.251750 TGTTTTTCTTATATTGTGAGACGGAG 57.748 34.615 0.00 0.00 0.00 4.63
1940 2297 8.610248 TTGTTTTTCTTATATTGTGAGACGGA 57.390 30.769 0.00 0.00 0.00 4.69
1941 2298 9.490663 GATTGTTTTTCTTATATTGTGAGACGG 57.509 33.333 0.00 0.00 0.00 4.79
1957 2314 9.931210 CCGTCCTACAATATAAGATTGTTTTTC 57.069 33.333 7.60 0.00 41.81 2.29
1958 2315 9.675464 TCCGTCCTACAATATAAGATTGTTTTT 57.325 29.630 7.60 0.00 41.81 1.94
1959 2316 9.326413 CTCCGTCCTACAATATAAGATTGTTTT 57.674 33.333 7.60 0.00 41.81 2.43
1960 2317 7.931948 CCTCCGTCCTACAATATAAGATTGTTT 59.068 37.037 7.60 0.00 41.81 2.83
1961 2318 7.442656 CCTCCGTCCTACAATATAAGATTGTT 58.557 38.462 7.60 0.00 41.81 2.83
1962 2319 6.014499 CCCTCCGTCCTACAATATAAGATTGT 60.014 42.308 7.46 7.46 43.74 2.71
1963 2320 6.210784 TCCCTCCGTCCTACAATATAAGATTG 59.789 42.308 0.00 0.00 35.29 2.67
1964 2321 6.320518 TCCCTCCGTCCTACAATATAAGATT 58.679 40.000 0.00 0.00 0.00 2.40
1965 2322 5.900437 TCCCTCCGTCCTACAATATAAGAT 58.100 41.667 0.00 0.00 0.00 2.40
1966 2323 5.163012 ACTCCCTCCGTCCTACAATATAAGA 60.163 44.000 0.00 0.00 0.00 2.10
1967 2324 5.078256 ACTCCCTCCGTCCTACAATATAAG 58.922 45.833 0.00 0.00 0.00 1.73
1968 2325 5.070823 ACTCCCTCCGTCCTACAATATAA 57.929 43.478 0.00 0.00 0.00 0.98
1969 2326 4.736611 ACTCCCTCCGTCCTACAATATA 57.263 45.455 0.00 0.00 0.00 0.86
1970 2327 3.614568 ACTCCCTCCGTCCTACAATAT 57.385 47.619 0.00 0.00 0.00 1.28
1971 2328 4.524802 TTACTCCCTCCGTCCTACAATA 57.475 45.455 0.00 0.00 0.00 1.90
1972 2329 3.393426 TTACTCCCTCCGTCCTACAAT 57.607 47.619 0.00 0.00 0.00 2.71
1973 2330 2.905415 TTACTCCCTCCGTCCTACAA 57.095 50.000 0.00 0.00 0.00 2.41
1974 2331 3.028850 CAATTACTCCCTCCGTCCTACA 58.971 50.000 0.00 0.00 0.00 2.74
1975 2332 3.029570 ACAATTACTCCCTCCGTCCTAC 58.970 50.000 0.00 0.00 0.00 3.18
1976 2333 3.028850 CACAATTACTCCCTCCGTCCTA 58.971 50.000 0.00 0.00 0.00 2.94
1977 2334 1.831736 CACAATTACTCCCTCCGTCCT 59.168 52.381 0.00 0.00 0.00 3.85
1978 2335 1.829222 TCACAATTACTCCCTCCGTCC 59.171 52.381 0.00 0.00 0.00 4.79
1979 2336 3.194968 TCTTCACAATTACTCCCTCCGTC 59.805 47.826 0.00 0.00 0.00 4.79
1980 2337 3.170717 TCTTCACAATTACTCCCTCCGT 58.829 45.455 0.00 0.00 0.00 4.69
1981 2338 3.887621 TCTTCACAATTACTCCCTCCG 57.112 47.619 0.00 0.00 0.00 4.63
1982 2339 9.847224 TTATAAATCTTCACAATTACTCCCTCC 57.153 33.333 0.00 0.00 0.00 4.30
2017 2374 7.222000 TGGTTTTACAATTTCCAGTGGTATC 57.778 36.000 9.54 0.00 0.00 2.24
2069 2426 1.347062 TAGGTCACCAGCATGTCACA 58.653 50.000 0.00 0.00 0.00 3.58
2163 2625 3.078837 TGTTCCGCCATAGTTCCTTTTC 58.921 45.455 0.00 0.00 0.00 2.29
2168 2630 2.158957 TCATCTGTTCCGCCATAGTTCC 60.159 50.000 0.00 0.00 0.00 3.62
2169 2631 3.179443 TCATCTGTTCCGCCATAGTTC 57.821 47.619 0.00 0.00 0.00 3.01
2170 2632 3.627395 TTCATCTGTTCCGCCATAGTT 57.373 42.857 0.00 0.00 0.00 2.24
2171 2633 3.134623 TCATTCATCTGTTCCGCCATAGT 59.865 43.478 0.00 0.00 0.00 2.12
2172 2634 3.732212 TCATTCATCTGTTCCGCCATAG 58.268 45.455 0.00 0.00 0.00 2.23
2174 2636 2.715749 TCATTCATCTGTTCCGCCAT 57.284 45.000 0.00 0.00 0.00 4.40
2175 2637 2.564771 GATCATTCATCTGTTCCGCCA 58.435 47.619 0.00 0.00 0.00 5.69
2185 2647 5.924825 GCCTTTGCATTAAGGATCATTCATC 59.075 40.000 19.41 0.00 46.28 2.92
2231 2700 8.726988 GCTTTTATGAGTGTTAGTTACCATTCA 58.273 33.333 0.00 0.00 0.00 2.57
2256 2725 5.391312 AGTTTGGGACATGAATTAGTTGC 57.609 39.130 0.00 0.00 39.30 4.17
2277 2746 8.462016 AGCTAGACCAACAATGCTAATTTAAAG 58.538 33.333 0.00 0.00 0.00 1.85
2287 2756 2.869192 GCTAGAGCTAGACCAACAATGC 59.131 50.000 8.65 0.00 38.21 3.56
2356 2827 1.616374 TGTTTTGCGGAAAGGGGATTC 59.384 47.619 1.41 0.00 0.00 2.52
2446 2938 8.762481 ATACAAGAAAAAGAAAAGGTAGTGGT 57.238 30.769 0.00 0.00 0.00 4.16
2483 2976 3.568007 GCTCGATCTAGGTCACTCATCTT 59.432 47.826 3.42 0.00 0.00 2.40
2524 3017 2.907910 CACACATGGAAAGCTAGTGC 57.092 50.000 0.00 0.00 40.05 4.40
2535 3028 3.975522 GGTTTTCCTCAGCCACACATGG 61.976 54.545 0.00 0.00 42.33 3.66
2537 3030 1.620822 GGTTTTCCTCAGCCACACAT 58.379 50.000 0.00 0.00 36.94 3.21
2538 3031 0.467290 GGGTTTTCCTCAGCCACACA 60.467 55.000 0.00 0.00 40.46 3.72
2553 3046 2.919602 TCTGAATCCAAGGCTTAGGGTT 59.080 45.455 12.20 12.20 0.00 4.11
2563 3056 5.395682 TGCTTTCCATTTCTGAATCCAAG 57.604 39.130 0.00 0.00 0.00 3.61
2573 3066 1.066152 GAGGGCGATGCTTTCCATTTC 59.934 52.381 0.00 0.00 33.29 2.17
2595 3088 3.844090 GAGAGGCAGCTCGACCCC 61.844 72.222 0.00 0.00 0.00 4.95
2719 3213 9.078990 ACGAGATTCAAATATCACTATCCACTA 57.921 33.333 0.00 0.00 0.00 2.74
2768 3263 6.907212 CACAACTAGTCAACACTTTCATGAAC 59.093 38.462 7.89 0.00 33.62 3.18
2770 3265 6.257849 GTCACAACTAGTCAACACTTTCATGA 59.742 38.462 0.00 0.00 33.62 3.07
2821 3316 8.755018 GTTGATTACATTTTTACTATGCATGCC 58.245 33.333 16.68 0.00 0.00 4.40
2822 3317 8.471457 CGTTGATTACATTTTTACTATGCATGC 58.529 33.333 11.82 11.82 0.00 4.06
2835 3330 9.673454 GGTTTCTTTCTAACGTTGATTACATTT 57.327 29.630 11.99 0.00 0.00 2.32
2866 3361 1.340248 ACGTTCGTCCTTGTCACTGAT 59.660 47.619 0.00 0.00 0.00 2.90
2871 3366 1.267806 GGAGTACGTTCGTCCTTGTCA 59.732 52.381 0.00 0.00 0.00 3.58
2891 3386 7.247728 TGCTTATGTAAGAATTAAAGCCAACG 58.752 34.615 4.03 0.00 39.79 4.10
2901 3396 8.252417 TGCAAACATGATGCTTATGTAAGAATT 58.748 29.630 22.31 0.00 44.14 2.17
2902 3397 7.774134 TGCAAACATGATGCTTATGTAAGAAT 58.226 30.769 22.31 0.00 44.14 2.40
2931 3426 9.959721 ACCTTTTAATTCAAGACTATTAGAGCA 57.040 29.630 0.00 0.00 0.00 4.26
2976 3471 8.153479 TGTCCATATCTTCCAAAACATAATCG 57.847 34.615 0.00 0.00 0.00 3.34
2988 3643 8.506168 TGTATGAAACTTTGTCCATATCTTCC 57.494 34.615 0.00 0.00 0.00 3.46
3051 3737 9.804758 AGTATTTGTCACGGAAAACATTTTAAA 57.195 25.926 0.00 0.00 0.00 1.52
3054 3740 9.974980 AATAGTATTTGTCACGGAAAACATTTT 57.025 25.926 0.00 0.00 0.00 1.82
3055 3741 9.974980 AAATAGTATTTGTCACGGAAAACATTT 57.025 25.926 7.34 0.00 0.00 2.32
3057 3743 9.974980 AAAAATAGTATTTGTCACGGAAAACAT 57.025 25.926 8.88 0.00 0.00 2.71
3058 3744 9.239002 CAAAAATAGTATTTGTCACGGAAAACA 57.761 29.630 8.88 0.00 33.99 2.83
3059 3745 8.696175 CCAAAAATAGTATTTGTCACGGAAAAC 58.304 33.333 8.88 0.00 36.31 2.43
3060 3746 7.382759 GCCAAAAATAGTATTTGTCACGGAAAA 59.617 33.333 8.88 0.00 36.31 2.29
3061 3747 6.864165 GCCAAAAATAGTATTTGTCACGGAAA 59.136 34.615 8.88 0.00 36.31 3.13
3062 3748 6.383415 GCCAAAAATAGTATTTGTCACGGAA 58.617 36.000 8.88 0.00 36.31 4.30
3063 3749 5.391097 CGCCAAAAATAGTATTTGTCACGGA 60.391 40.000 8.88 0.00 36.31 4.69
3064 3750 4.791163 CGCCAAAAATAGTATTTGTCACGG 59.209 41.667 8.88 3.12 36.31 4.94
3065 3751 4.791163 CCGCCAAAAATAGTATTTGTCACG 59.209 41.667 8.88 8.88 36.31 4.35
3066 3752 5.705902 ACCGCCAAAAATAGTATTTGTCAC 58.294 37.500 8.88 0.00 36.31 3.67
3067 3753 5.473846 TGACCGCCAAAAATAGTATTTGTCA 59.526 36.000 15.13 15.13 36.31 3.58
3068 3754 5.945155 TGACCGCCAAAAATAGTATTTGTC 58.055 37.500 8.88 10.60 36.31 3.18
3069 3755 5.968528 TGACCGCCAAAAATAGTATTTGT 57.031 34.783 8.88 0.44 36.31 2.83
3070 3756 6.237808 GCATTGACCGCCAAAAATAGTATTTG 60.238 38.462 8.88 0.00 38.43 2.32
3071 3757 5.810074 GCATTGACCGCCAAAAATAGTATTT 59.190 36.000 2.10 2.10 38.43 1.40
3072 3758 5.105554 TGCATTGACCGCCAAAAATAGTATT 60.106 36.000 0.00 0.00 38.43 1.89
3073 3759 4.400884 TGCATTGACCGCCAAAAATAGTAT 59.599 37.500 0.00 0.00 38.43 2.12
3074 3760 3.759086 TGCATTGACCGCCAAAAATAGTA 59.241 39.130 0.00 0.00 38.43 1.82
3075 3761 2.560542 TGCATTGACCGCCAAAAATAGT 59.439 40.909 0.00 0.00 38.43 2.12
3076 3762 3.119531 TCTGCATTGACCGCCAAAAATAG 60.120 43.478 0.00 0.00 38.43 1.73
3077 3763 2.822561 TCTGCATTGACCGCCAAAAATA 59.177 40.909 0.00 0.00 38.43 1.40
3078 3764 1.617850 TCTGCATTGACCGCCAAAAAT 59.382 42.857 0.00 0.00 38.43 1.82
3079 3765 1.035923 TCTGCATTGACCGCCAAAAA 58.964 45.000 0.00 0.00 38.43 1.94
3080 3766 1.255882 ATCTGCATTGACCGCCAAAA 58.744 45.000 0.00 0.00 38.43 2.44
3081 3767 2.121291 TATCTGCATTGACCGCCAAA 57.879 45.000 0.00 0.00 38.43 3.28
3082 3768 2.121291 TTATCTGCATTGACCGCCAA 57.879 45.000 0.00 0.00 39.41 4.52
3083 3769 2.346766 ATTATCTGCATTGACCGCCA 57.653 45.000 0.00 0.00 0.00 5.69
3084 3770 3.715628 AAATTATCTGCATTGACCGCC 57.284 42.857 0.00 0.00 0.00 6.13
3085 3771 8.795786 TTAAATAAATTATCTGCATTGACCGC 57.204 30.769 0.00 0.00 0.00 5.68
3121 3807 5.814783 AGCGCATTCAAGATTTCATAACTC 58.185 37.500 11.47 0.00 0.00 3.01
3130 3816 5.517770 GCTTTCAAATAGCGCATTCAAGATT 59.482 36.000 11.47 0.00 0.00 2.40
3132 3818 4.156556 AGCTTTCAAATAGCGCATTCAAGA 59.843 37.500 11.47 4.53 43.37 3.02
3141 3827 8.452989 AAATAGACAAAAGCTTTCAAATAGCG 57.547 30.769 13.10 0.00 43.37 4.26
3182 3870 9.824534 GCCATTGACAAAATTAAAACCAAATAG 57.175 29.630 0.00 0.00 0.00 1.73
3183 3871 9.566432 AGCCATTGACAAAATTAAAACCAAATA 57.434 25.926 0.00 0.00 0.00 1.40
3184 3872 8.462589 AGCCATTGACAAAATTAAAACCAAAT 57.537 26.923 0.00 0.00 0.00 2.32
3188 3876 8.872845 CATAGAGCCATTGACAAAATTAAAACC 58.127 33.333 0.00 0.00 0.00 3.27
3203 3891 2.224719 GGACCATCTGCATAGAGCCATT 60.225 50.000 0.00 0.00 44.83 3.16
3204 3892 1.350351 GGACCATCTGCATAGAGCCAT 59.650 52.381 0.00 0.00 44.83 4.40
3205 3893 0.761187 GGACCATCTGCATAGAGCCA 59.239 55.000 0.00 0.00 44.83 4.75
3227 3915 1.474077 CCTGGTAACTTGGCAGCAATC 59.526 52.381 0.00 0.00 37.61 2.67
3272 3960 5.703978 TCTTTATGTGTGTGTTCCAATGG 57.296 39.130 0.00 0.00 0.00 3.16
3359 4047 1.943340 GTGGATAGGCTAGCTTGTTGC 59.057 52.381 15.72 5.48 43.29 4.17
3432 4120 0.675083 TCCTGTTGCTGGCATTGTTG 59.325 50.000 0.00 0.00 0.00 3.33
3435 4123 0.038892 GTGTCCTGTTGCTGGCATTG 60.039 55.000 0.00 0.00 0.00 2.82
3438 4126 2.203337 GGTGTCCTGTTGCTGGCA 60.203 61.111 0.00 0.00 0.00 4.92
3446 4134 0.843309 TGTTGATGTGGGTGTCCTGT 59.157 50.000 0.00 0.00 0.00 4.00
3455 4143 1.073763 TCCTTGTCCCTGTTGATGTGG 59.926 52.381 0.00 0.00 0.00 4.17
3464 4152 2.432628 GACGCGTCCTTGTCCCTG 60.433 66.667 28.61 0.00 0.00 4.45
3492 4180 4.208686 CGGTGGGCTAGACTCGCC 62.209 72.222 9.53 9.53 46.83 5.54
3510 4198 1.883926 GGTGTTTGTGCCCGATAAGTT 59.116 47.619 0.00 0.00 0.00 2.66
3512 4200 0.446222 CGGTGTTTGTGCCCGATAAG 59.554 55.000 0.00 0.00 44.41 1.73
3518 4206 1.065109 GTTGTCGGTGTTTGTGCCC 59.935 57.895 0.00 0.00 0.00 5.36
3550 4238 3.018856 TCCTGATCATGGATGTTGTTGC 58.981 45.455 9.14 0.00 0.00 4.17
3555 4243 3.720526 AGTGGATCCTGATCATGGATGTT 59.279 43.478 23.34 7.97 43.68 2.71
3556 4244 3.324689 AGTGGATCCTGATCATGGATGT 58.675 45.455 23.34 8.53 43.68 3.06
3566 4254 3.118261 GCCATTTCACTAGTGGATCCTGA 60.118 47.826 22.48 4.82 34.94 3.86
3584 4272 1.633915 CCTCCTCTTCCAGCAGCCAT 61.634 60.000 0.00 0.00 0.00 4.40
3681 4369 0.753111 GACATGGTGGAGGGAATGCC 60.753 60.000 0.00 0.00 0.00 4.40
3714 4402 2.125512 GAGCAGCCAATCCGTCGT 60.126 61.111 0.00 0.00 0.00 4.34
3751 4439 2.708861 TCAAGCAAAGTTGAGTCCCCTA 59.291 45.455 0.00 0.00 32.54 3.53
3761 4449 2.494870 GGAGGCATCATCAAGCAAAGTT 59.505 45.455 0.00 0.00 0.00 2.66
3763 4451 2.097036 TGGAGGCATCATCAAGCAAAG 58.903 47.619 0.00 0.00 0.00 2.77
3773 4461 1.264045 TGTCGACCATGGAGGCATCA 61.264 55.000 21.47 6.86 43.14 3.07
3800 4488 5.978322 GCTAAACTACTAGAGGTTTGATCCG 59.022 44.000 19.77 9.65 36.18 4.18
3853 4541 2.030540 ACATGCAACACAAGCTGACATC 60.031 45.455 0.00 0.00 0.00 3.06
3911 4599 7.908827 TTAACTGGATTTAAACGAGCACATA 57.091 32.000 0.00 0.00 0.00 2.29
3914 4602 7.527457 AGAATTAACTGGATTTAAACGAGCAC 58.473 34.615 0.00 0.00 0.00 4.40
3915 4603 7.681939 AGAATTAACTGGATTTAAACGAGCA 57.318 32.000 0.00 0.00 0.00 4.26
3916 4604 8.234546 TCAAGAATTAACTGGATTTAAACGAGC 58.765 33.333 0.00 0.00 0.00 5.03
3924 4612 9.374838 GCATCAATTCAAGAATTAACTGGATTT 57.625 29.630 7.65 0.00 38.84 2.17
3925 4613 8.533657 TGCATCAATTCAAGAATTAACTGGATT 58.466 29.630 7.65 0.00 38.84 3.01
3926 4614 8.070034 TGCATCAATTCAAGAATTAACTGGAT 57.930 30.769 7.65 4.20 38.84 3.41
3927 4615 7.465353 TGCATCAATTCAAGAATTAACTGGA 57.535 32.000 7.65 5.00 38.84 3.86
3928 4616 8.712285 AATGCATCAATTCAAGAATTAACTGG 57.288 30.769 0.00 0.00 38.84 4.00
3931 4619 9.763465 CCAAAATGCATCAATTCAAGAATTAAC 57.237 29.630 0.00 0.19 38.84 2.01
3942 4630 6.112927 ACACCTTACCAAAATGCATCAATT 57.887 33.333 0.00 0.00 0.00 2.32
3984 4672 6.015940 CCTTGACCTTTGAGGGATAAATATGC 60.016 42.308 0.00 0.00 40.58 3.14
4027 4715 6.665992 AGTACAACTTTGTGGATCTGAGTA 57.334 37.500 4.82 0.00 42.31 2.59
4028 4716 5.552870 AGTACAACTTTGTGGATCTGAGT 57.447 39.130 4.82 0.00 42.31 3.41
4029 4717 6.925211 TCTAGTACAACTTTGTGGATCTGAG 58.075 40.000 4.82 0.00 42.31 3.35
4030 4718 6.071334 CCTCTAGTACAACTTTGTGGATCTGA 60.071 42.308 4.82 0.00 42.31 3.27
4031 4719 6.102663 CCTCTAGTACAACTTTGTGGATCTG 58.897 44.000 4.82 0.00 42.31 2.90
4032 4720 5.780793 ACCTCTAGTACAACTTTGTGGATCT 59.219 40.000 4.82 1.75 42.31 2.75
4033 4721 5.869888 CACCTCTAGTACAACTTTGTGGATC 59.130 44.000 4.82 0.00 42.31 3.36
4034 4722 5.794894 CACCTCTAGTACAACTTTGTGGAT 58.205 41.667 4.82 0.00 42.31 3.41
4035 4723 4.502604 GCACCTCTAGTACAACTTTGTGGA 60.503 45.833 4.82 0.00 42.31 4.02
4036 4724 3.746492 GCACCTCTAGTACAACTTTGTGG 59.254 47.826 4.82 0.00 42.31 4.17
4037 4725 3.428870 CGCACCTCTAGTACAACTTTGTG 59.571 47.826 4.82 0.00 42.31 3.33
4038 4726 3.319972 TCGCACCTCTAGTACAACTTTGT 59.680 43.478 0.00 0.00 44.86 2.83
4039 4727 3.673809 GTCGCACCTCTAGTACAACTTTG 59.326 47.826 0.00 0.00 0.00 2.77
4040 4728 3.319972 TGTCGCACCTCTAGTACAACTTT 59.680 43.478 0.00 0.00 0.00 2.66
4041 4729 2.889045 TGTCGCACCTCTAGTACAACTT 59.111 45.455 0.00 0.00 0.00 2.66
4042 4730 2.488545 CTGTCGCACCTCTAGTACAACT 59.511 50.000 0.00 0.00 0.00 3.16
4043 4731 2.228343 ACTGTCGCACCTCTAGTACAAC 59.772 50.000 0.00 0.00 0.00 3.32
4044 4732 2.511659 ACTGTCGCACCTCTAGTACAA 58.488 47.619 0.00 0.00 0.00 2.41
4045 4733 2.195741 ACTGTCGCACCTCTAGTACA 57.804 50.000 0.00 0.00 0.00 2.90
4046 4734 4.691860 TTAACTGTCGCACCTCTAGTAC 57.308 45.455 0.00 0.00 0.00 2.73
4047 4735 5.909621 AATTAACTGTCGCACCTCTAGTA 57.090 39.130 0.00 0.00 0.00 1.82
4048 4736 4.803098 AATTAACTGTCGCACCTCTAGT 57.197 40.909 0.00 0.00 0.00 2.57
4049 4737 4.330074 CCAAATTAACTGTCGCACCTCTAG 59.670 45.833 0.00 0.00 0.00 2.43
4050 4738 4.020928 TCCAAATTAACTGTCGCACCTCTA 60.021 41.667 0.00 0.00 0.00 2.43
4051 4739 3.074412 CCAAATTAACTGTCGCACCTCT 58.926 45.455 0.00 0.00 0.00 3.69
4052 4740 3.071479 TCCAAATTAACTGTCGCACCTC 58.929 45.455 0.00 0.00 0.00 3.85
4053 4741 3.134574 TCCAAATTAACTGTCGCACCT 57.865 42.857 0.00 0.00 0.00 4.00
4054 4742 3.485216 CGATCCAAATTAACTGTCGCACC 60.485 47.826 0.00 0.00 0.00 5.01
4055 4743 3.485216 CCGATCCAAATTAACTGTCGCAC 60.485 47.826 0.00 0.00 0.00 5.34
4056 4744 2.675844 CCGATCCAAATTAACTGTCGCA 59.324 45.455 0.00 0.00 0.00 5.10
4057 4745 2.933906 TCCGATCCAAATTAACTGTCGC 59.066 45.455 0.00 0.00 0.00 5.19
4058 4746 4.024893 CCATCCGATCCAAATTAACTGTCG 60.025 45.833 0.00 0.00 0.00 4.35
4059 4747 5.123227 TCCATCCGATCCAAATTAACTGTC 58.877 41.667 0.00 0.00 0.00 3.51
4060 4748 5.110814 TCCATCCGATCCAAATTAACTGT 57.889 39.130 0.00 0.00 0.00 3.55
4061 4749 5.126067 ACTCCATCCGATCCAAATTAACTG 58.874 41.667 0.00 0.00 0.00 3.16
4062 4750 5.373812 ACTCCATCCGATCCAAATTAACT 57.626 39.130 0.00 0.00 0.00 2.24
4063 4751 7.745620 AATACTCCATCCGATCCAAATTAAC 57.254 36.000 0.00 0.00 0.00 2.01
4064 4752 9.854668 TTTAATACTCCATCCGATCCAAATTAA 57.145 29.630 0.00 0.00 0.00 1.40
4065 4753 9.854668 TTTTAATACTCCATCCGATCCAAATTA 57.145 29.630 0.00 0.00 0.00 1.40
4066 4754 8.760980 TTTTAATACTCCATCCGATCCAAATT 57.239 30.769 0.00 0.00 0.00 1.82
4067 4755 8.760980 TTTTTAATACTCCATCCGATCCAAAT 57.239 30.769 0.00 0.00 0.00 2.32
4068 4756 7.201785 GCTTTTTAATACTCCATCCGATCCAAA 60.202 37.037 0.00 0.00 0.00 3.28
4069 4757 6.262273 GCTTTTTAATACTCCATCCGATCCAA 59.738 38.462 0.00 0.00 0.00 3.53
4070 4758 5.763204 GCTTTTTAATACTCCATCCGATCCA 59.237 40.000 0.00 0.00 0.00 3.41
4071 4759 5.998363 AGCTTTTTAATACTCCATCCGATCC 59.002 40.000 0.00 0.00 0.00 3.36
4072 4760 8.660373 CATAGCTTTTTAATACTCCATCCGATC 58.340 37.037 0.00 0.00 0.00 3.69
4073 4761 8.157476 ACATAGCTTTTTAATACTCCATCCGAT 58.843 33.333 0.00 0.00 0.00 4.18
4074 4762 7.506114 ACATAGCTTTTTAATACTCCATCCGA 58.494 34.615 0.00 0.00 0.00 4.55
4075 4763 7.730364 ACATAGCTTTTTAATACTCCATCCG 57.270 36.000 0.00 0.00 0.00 4.18
4076 4764 9.952188 GAAACATAGCTTTTTAATACTCCATCC 57.048 33.333 0.00 0.00 0.00 3.51
4077 4765 9.952188 GGAAACATAGCTTTTTAATACTCCATC 57.048 33.333 0.00 0.00 0.00 3.51
4078 4766 9.700831 AGGAAACATAGCTTTTTAATACTCCAT 57.299 29.630 0.00 0.00 0.00 3.41
4079 4767 9.174166 GAGGAAACATAGCTTTTTAATACTCCA 57.826 33.333 0.00 0.00 0.00 3.86
4080 4768 9.397280 AGAGGAAACATAGCTTTTTAATACTCC 57.603 33.333 0.00 0.00 0.00 3.85
4082 4770 9.099454 CGAGAGGAAACATAGCTTTTTAATACT 57.901 33.333 0.00 0.00 0.00 2.12
4083 4771 9.095065 TCGAGAGGAAACATAGCTTTTTAATAC 57.905 33.333 0.00 0.00 0.00 1.89
4089 4777 5.153950 ACTCGAGAGGAAACATAGCTTTT 57.846 39.130 21.68 0.00 0.00 2.27
4236 4926 9.166173 CTCACTTTGATCATGTATTTGTAAGGA 57.834 33.333 0.00 0.00 0.00 3.36
4237 4927 7.912250 GCTCACTTTGATCATGTATTTGTAAGG 59.088 37.037 0.00 0.00 0.00 2.69
4267 4957 9.376075 CTCTCATACATGTCTGAATTTGTAACT 57.624 33.333 14.14 0.00 0.00 2.24
4282 4972 7.545965 AGTTTAGGTTTCGTTCTCTCATACATG 59.454 37.037 0.00 0.00 0.00 3.21
4286 4976 7.929785 ACAAAGTTTAGGTTTCGTTCTCTCATA 59.070 33.333 0.00 0.00 0.00 2.15
4299 4989 7.770433 ACTTAGAACCGTAACAAAGTTTAGGTT 59.230 33.333 16.16 16.16 42.42 3.50
4304 4994 7.381766 ACAACTTAGAACCGTAACAAAGTTT 57.618 32.000 0.00 0.00 35.57 2.66
4373 5063 5.500290 CGTCGTTATGGTAGAAATGCACTTC 60.500 44.000 0.00 0.00 0.00 3.01
4387 5077 6.183360 GGCCATAAGAATTATCGTCGTTATGG 60.183 42.308 17.69 17.69 45.14 2.74
4462 5167 7.197071 TCAAGATGCAATAACTAAACAACGT 57.803 32.000 0.00 0.00 0.00 3.99
4470 5175 6.261603 CCATGCTCTTCAAGATGCAATAACTA 59.738 38.462 13.39 0.00 34.08 2.24
4499 5204 6.864685 CCACATATGCATAGCAAACAATTAGG 59.135 38.462 12.79 0.00 43.62 2.69
4500 5205 7.380333 CACCACATATGCATAGCAAACAATTAG 59.620 37.037 12.79 0.00 43.62 1.73
4519 5224 2.645838 ACTCAAGTGAAGCACCACAT 57.354 45.000 10.45 0.00 39.42 3.21
4571 5276 4.431809 TGAACTCAACAACTTTGCATTGG 58.568 39.130 3.73 0.00 0.00 3.16
4604 5310 7.910441 TTAACTACCATACAAAGCTTACACC 57.090 36.000 0.00 0.00 0.00 4.16
4682 5389 6.759827 TCGAGTTGTTGGATTTATAAGCCTAC 59.240 38.462 11.42 11.42 41.91 3.18
4687 5394 7.827819 TCTGTCGAGTTGTTGGATTTATAAG 57.172 36.000 0.00 0.00 0.00 1.73
4704 5412 6.677781 ACTTCATTTTTCAAACTCTGTCGA 57.322 33.333 0.00 0.00 0.00 4.20
4706 5414 8.862550 ATCAACTTCATTTTTCAAACTCTGTC 57.137 30.769 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.