Multiple sequence alignment - TraesCS5A01G319900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G319900 chr5A 100.000 3478 0 0 1 3478 533074141 533070664 0.000000e+00 6423.0
1 TraesCS5A01G319900 chr5D 88.679 2535 147 53 226 2706 418288840 418286392 0.000000e+00 2963.0
2 TraesCS5A01G319900 chr5D 86.920 474 28 9 2923 3365 418286174 418285704 5.180000e-138 501.0
3 TraesCS5A01G319900 chr5B 87.743 2366 137 63 442 2743 505567248 505564972 0.000000e+00 2621.0
4 TraesCS5A01G319900 chr5B 91.339 508 33 8 2921 3426 505564755 505564257 0.000000e+00 684.0
5 TraesCS5A01G319900 chr7A 88.333 60 7 0 1 60 4592400 4592341 4.820000e-09 73.1
6 TraesCS5A01G319900 chr6B 100.000 28 0 0 79 106 142640495 142640468 6.000000e-03 52.8
7 TraesCS5A01G319900 chr4A 100.000 28 0 0 115 142 3989319 3989292 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G319900 chr5A 533070664 533074141 3477 True 6423.0 6423 100.0000 1 3478 1 chr5A.!!$R1 3477
1 TraesCS5A01G319900 chr5D 418285704 418288840 3136 True 1732.0 2963 87.7995 226 3365 2 chr5D.!!$R1 3139
2 TraesCS5A01G319900 chr5B 505564257 505567248 2991 True 1652.5 2621 89.5410 442 3426 2 chr5B.!!$R1 2984

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
172 173 0.033920 ATGACGAGCACAACTGAGCA 59.966 50.0 2.00 0.0 34.0 4.26 F
426 427 0.107017 CATCCCAAATCACCGGAGCT 60.107 55.0 9.46 0.0 0.0 4.09 F
1051 1083 0.108472 CATCTCGCACCTCAAGCAGA 60.108 55.0 0.00 0.0 0.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1156 1188 0.101579 GAGAGGAGCAGACGGTAAGC 59.898 60.0 0.0 0.0 0.00 3.09 R
2120 2200 0.319555 CGAACGCCTTCAGAACCTGA 60.320 55.0 0.0 0.0 38.87 3.86 R
2484 2573 0.108138 GGCTAATCTGTGTCCGCACT 60.108 55.0 0.0 0.0 45.44 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 5.869753 AAATTGTGTACAGATCTCAGTGC 57.130 39.130 0.00 0.00 0.00 4.40
26 27 4.541973 ATTGTGTACAGATCTCAGTGCA 57.458 40.909 0.00 0.00 0.00 4.57
27 28 4.335400 TTGTGTACAGATCTCAGTGCAA 57.665 40.909 5.70 1.17 30.92 4.08
28 29 3.917988 TGTGTACAGATCTCAGTGCAAG 58.082 45.455 5.70 0.00 30.92 4.01
29 30 3.573967 TGTGTACAGATCTCAGTGCAAGA 59.426 43.478 5.70 0.00 30.92 3.02
30 31 4.221482 TGTGTACAGATCTCAGTGCAAGAT 59.779 41.667 5.70 0.00 36.19 2.40
31 32 4.803088 GTGTACAGATCTCAGTGCAAGATC 59.197 45.833 16.04 16.04 46.28 2.75
36 37 4.879104 GATCTCAGTGCAAGATCAAAGG 57.121 45.455 18.06 0.00 45.57 3.11
37 38 4.511527 GATCTCAGTGCAAGATCAAAGGA 58.488 43.478 18.06 1.00 45.57 3.36
38 39 4.356405 TCTCAGTGCAAGATCAAAGGAA 57.644 40.909 0.00 0.00 0.00 3.36
39 40 4.914983 TCTCAGTGCAAGATCAAAGGAAT 58.085 39.130 0.00 0.00 0.00 3.01
40 41 6.053632 TCTCAGTGCAAGATCAAAGGAATA 57.946 37.500 0.00 0.00 0.00 1.75
41 42 6.656902 TCTCAGTGCAAGATCAAAGGAATAT 58.343 36.000 0.00 0.00 0.00 1.28
42 43 7.795047 TCTCAGTGCAAGATCAAAGGAATATA 58.205 34.615 0.00 0.00 0.00 0.86
43 44 7.930325 TCTCAGTGCAAGATCAAAGGAATATAG 59.070 37.037 0.00 0.00 0.00 1.31
44 45 7.568349 TCAGTGCAAGATCAAAGGAATATAGT 58.432 34.615 0.00 0.00 0.00 2.12
45 46 8.704668 TCAGTGCAAGATCAAAGGAATATAGTA 58.295 33.333 0.00 0.00 0.00 1.82
46 47 9.499479 CAGTGCAAGATCAAAGGAATATAGTAT 57.501 33.333 0.00 0.00 0.00 2.12
47 48 9.717942 AGTGCAAGATCAAAGGAATATAGTATC 57.282 33.333 0.00 0.00 0.00 2.24
48 49 8.651588 GTGCAAGATCAAAGGAATATAGTATCG 58.348 37.037 0.00 0.00 0.00 2.92
49 50 8.585018 TGCAAGATCAAAGGAATATAGTATCGA 58.415 33.333 0.00 0.00 0.00 3.59
50 51 9.593134 GCAAGATCAAAGGAATATAGTATCGAT 57.407 33.333 2.16 2.16 0.00 3.59
53 54 9.397280 AGATCAAAGGAATATAGTATCGATCGA 57.603 33.333 21.86 21.86 32.71 3.59
54 55 9.658475 GATCAAAGGAATATAGTATCGATCGAG 57.342 37.037 23.84 3.83 0.00 4.04
55 56 8.788325 TCAAAGGAATATAGTATCGATCGAGA 57.212 34.615 23.84 16.88 0.00 4.04
56 57 8.666573 TCAAAGGAATATAGTATCGATCGAGAC 58.333 37.037 30.29 30.29 36.69 3.36
57 58 8.451748 CAAAGGAATATAGTATCGATCGAGACA 58.548 37.037 35.98 24.78 38.66 3.41
58 59 8.740123 AAGGAATATAGTATCGATCGAGACAT 57.260 34.615 35.98 28.22 38.66 3.06
59 60 9.833917 AAGGAATATAGTATCGATCGAGACATA 57.166 33.333 35.98 29.08 38.66 2.29
60 61 9.833917 AGGAATATAGTATCGATCGAGACATAA 57.166 33.333 35.98 24.17 38.66 1.90
61 62 9.866936 GGAATATAGTATCGATCGAGACATAAC 57.133 37.037 35.98 25.39 38.66 1.89
62 63 9.570507 GAATATAGTATCGATCGAGACATAACG 57.429 37.037 35.98 1.19 38.66 3.18
63 64 8.868635 ATATAGTATCGATCGAGACATAACGA 57.131 34.615 35.98 19.34 38.66 3.85
64 65 5.919272 AGTATCGATCGAGACATAACGAA 57.081 39.130 35.98 6.43 41.65 3.85
65 66 5.918082 AGTATCGATCGAGACATAACGAAG 58.082 41.667 35.98 0.00 41.65 3.79
66 67 5.466058 AGTATCGATCGAGACATAACGAAGT 59.534 40.000 35.98 15.69 40.05 3.01
67 68 4.193021 TCGATCGAGACATAACGAAGTC 57.807 45.455 15.15 0.00 45.00 3.01
68 69 3.869832 TCGATCGAGACATAACGAAGTCT 59.130 43.478 15.15 0.00 45.00 3.24
74 75 4.343811 AGACATAACGAAGTCTCAGTCG 57.656 45.455 0.00 0.00 45.00 4.18
75 76 4.001652 AGACATAACGAAGTCTCAGTCGA 58.998 43.478 0.00 0.00 45.00 4.20
76 77 4.636648 AGACATAACGAAGTCTCAGTCGAT 59.363 41.667 0.00 0.00 45.00 3.59
77 78 4.663166 ACATAACGAAGTCTCAGTCGATG 58.337 43.478 0.00 0.00 45.00 3.84
78 79 4.156190 ACATAACGAAGTCTCAGTCGATGT 59.844 41.667 0.00 0.00 45.00 3.06
79 80 2.904011 ACGAAGTCTCAGTCGATGTC 57.096 50.000 0.00 0.00 29.74 3.06
80 81 1.128878 ACGAAGTCTCAGTCGATGTCG 59.871 52.381 0.00 0.00 29.74 4.35
81 82 3.185943 ACGAAGTCTCAGTCGATGTCGA 61.186 50.000 0.21 0.21 42.05 4.20
93 94 2.352034 TCGATGTCGACTGAGACTTAGC 59.648 50.000 17.92 0.00 44.22 3.09
94 95 2.096013 CGATGTCGACTGAGACTTAGCA 59.904 50.000 17.92 0.00 43.02 3.49
95 96 3.426292 CGATGTCGACTGAGACTTAGCAA 60.426 47.826 17.92 0.00 43.02 3.91
96 97 4.486090 GATGTCGACTGAGACTTAGCAAA 58.514 43.478 17.92 0.00 41.47 3.68
97 98 4.316205 TGTCGACTGAGACTTAGCAAAA 57.684 40.909 17.92 0.00 41.47 2.44
98 99 4.883083 TGTCGACTGAGACTTAGCAAAAT 58.117 39.130 17.92 0.00 41.47 1.82
99 100 5.297547 TGTCGACTGAGACTTAGCAAAATT 58.702 37.500 17.92 0.00 41.47 1.82
100 101 5.177511 TGTCGACTGAGACTTAGCAAAATTG 59.822 40.000 17.92 0.00 41.47 2.32
101 102 5.405571 GTCGACTGAGACTTAGCAAAATTGA 59.594 40.000 8.70 0.00 38.09 2.57
102 103 5.989168 TCGACTGAGACTTAGCAAAATTGAA 59.011 36.000 0.00 0.00 0.00 2.69
103 104 6.481976 TCGACTGAGACTTAGCAAAATTGAAA 59.518 34.615 0.00 0.00 0.00 2.69
104 105 7.011950 TCGACTGAGACTTAGCAAAATTGAAAA 59.988 33.333 0.00 0.00 0.00 2.29
105 106 7.805071 CGACTGAGACTTAGCAAAATTGAAAAT 59.195 33.333 0.00 0.00 0.00 1.82
106 107 9.468532 GACTGAGACTTAGCAAAATTGAAAATT 57.531 29.630 0.00 0.00 0.00 1.82
143 144 9.823647 ATGTCTTATATTTTGATATAGAGGCGG 57.176 33.333 0.00 0.00 0.00 6.13
144 145 8.812972 TGTCTTATATTTTGATATAGAGGCGGT 58.187 33.333 0.00 0.00 0.00 5.68
156 157 9.470399 TGATATAGAGGCGGTAGTAAAATATGA 57.530 33.333 0.00 0.00 0.00 2.15
157 158 9.733219 GATATAGAGGCGGTAGTAAAATATGAC 57.267 37.037 0.00 0.00 0.00 3.06
158 159 4.868067 AGAGGCGGTAGTAAAATATGACG 58.132 43.478 0.00 0.00 0.00 4.35
159 160 4.581824 AGAGGCGGTAGTAAAATATGACGA 59.418 41.667 0.00 0.00 0.00 4.20
160 161 4.868067 AGGCGGTAGTAAAATATGACGAG 58.132 43.478 0.00 0.00 0.00 4.18
161 162 3.427863 GGCGGTAGTAAAATATGACGAGC 59.572 47.826 0.00 0.00 0.00 5.03
162 163 4.046462 GCGGTAGTAAAATATGACGAGCA 58.954 43.478 0.00 0.00 0.00 4.26
163 164 4.085210 GCGGTAGTAAAATATGACGAGCAC 60.085 45.833 0.00 0.00 0.00 4.40
164 165 5.038683 CGGTAGTAAAATATGACGAGCACA 58.961 41.667 0.00 0.00 0.00 4.57
165 166 5.517411 CGGTAGTAAAATATGACGAGCACAA 59.483 40.000 0.00 0.00 0.00 3.33
166 167 6.507456 CGGTAGTAAAATATGACGAGCACAAC 60.507 42.308 0.00 0.00 0.00 3.32
167 168 6.534079 GGTAGTAAAATATGACGAGCACAACT 59.466 38.462 0.00 0.00 0.00 3.16
168 169 6.408858 AGTAAAATATGACGAGCACAACTG 57.591 37.500 0.00 0.00 0.00 3.16
169 170 6.163476 AGTAAAATATGACGAGCACAACTGA 58.837 36.000 0.00 0.00 0.00 3.41
170 171 5.536554 AAAATATGACGAGCACAACTGAG 57.463 39.130 0.00 0.00 0.00 3.35
171 172 1.996292 TATGACGAGCACAACTGAGC 58.004 50.000 0.00 0.00 0.00 4.26
172 173 0.033920 ATGACGAGCACAACTGAGCA 59.966 50.000 2.00 0.00 34.00 4.26
173 174 0.033920 TGACGAGCACAACTGAGCAT 59.966 50.000 2.00 0.00 34.00 3.79
174 175 0.441533 GACGAGCACAACTGAGCATG 59.558 55.000 2.00 0.00 34.00 4.06
175 176 0.250038 ACGAGCACAACTGAGCATGT 60.250 50.000 2.00 0.00 34.00 3.21
176 177 0.870393 CGAGCACAACTGAGCATGTT 59.130 50.000 2.00 0.00 34.00 2.71
177 178 1.265095 CGAGCACAACTGAGCATGTTT 59.735 47.619 2.00 0.00 34.00 2.83
178 179 2.287188 CGAGCACAACTGAGCATGTTTT 60.287 45.455 2.00 0.00 34.00 2.43
179 180 3.047796 GAGCACAACTGAGCATGTTTTG 58.952 45.455 2.00 0.00 34.00 2.44
180 181 2.129607 GCACAACTGAGCATGTTTTGG 58.870 47.619 0.00 0.00 0.00 3.28
181 182 2.481795 GCACAACTGAGCATGTTTTGGT 60.482 45.455 0.00 0.00 39.22 3.67
182 183 3.117794 CACAACTGAGCATGTTTTGGTG 58.882 45.455 0.00 0.00 35.82 4.17
183 184 2.101249 ACAACTGAGCATGTTTTGGTGG 59.899 45.455 0.00 0.00 35.82 4.61
184 185 2.361757 CAACTGAGCATGTTTTGGTGGA 59.638 45.455 0.00 0.00 35.82 4.02
185 186 2.665165 ACTGAGCATGTTTTGGTGGAA 58.335 42.857 0.00 0.00 35.82 3.53
186 187 3.030291 ACTGAGCATGTTTTGGTGGAAA 58.970 40.909 0.00 0.00 35.82 3.13
187 188 3.450457 ACTGAGCATGTTTTGGTGGAAAA 59.550 39.130 0.00 0.00 35.82 2.29
188 189 4.101430 ACTGAGCATGTTTTGGTGGAAAAT 59.899 37.500 0.00 0.00 35.96 1.82
189 190 4.378774 TGAGCATGTTTTGGTGGAAAATG 58.621 39.130 0.00 0.00 35.96 2.32
190 191 3.742385 AGCATGTTTTGGTGGAAAATGG 58.258 40.909 0.00 0.00 35.96 3.16
191 192 2.813172 GCATGTTTTGGTGGAAAATGGG 59.187 45.455 0.00 0.00 35.96 4.00
192 193 3.495806 GCATGTTTTGGTGGAAAATGGGA 60.496 43.478 0.00 0.00 35.96 4.37
193 194 4.806964 GCATGTTTTGGTGGAAAATGGGAT 60.807 41.667 0.00 0.00 35.96 3.85
194 195 4.615588 TGTTTTGGTGGAAAATGGGATC 57.384 40.909 0.00 0.00 35.96 3.36
195 196 3.969976 TGTTTTGGTGGAAAATGGGATCA 59.030 39.130 0.00 0.00 35.96 2.92
196 197 4.410228 TGTTTTGGTGGAAAATGGGATCAA 59.590 37.500 0.00 0.00 35.96 2.57
197 198 4.888326 TTTGGTGGAAAATGGGATCAAG 57.112 40.909 0.00 0.00 0.00 3.02
198 199 2.178580 TGGTGGAAAATGGGATCAAGC 58.821 47.619 0.00 0.00 0.00 4.01
199 200 2.225343 TGGTGGAAAATGGGATCAAGCT 60.225 45.455 0.00 0.00 0.00 3.74
200 201 2.167075 GGTGGAAAATGGGATCAAGCTG 59.833 50.000 0.00 0.00 0.00 4.24
201 202 1.826720 TGGAAAATGGGATCAAGCTGC 59.173 47.619 0.00 0.00 0.00 5.25
202 203 1.137675 GGAAAATGGGATCAAGCTGCC 59.862 52.381 0.00 0.00 0.00 4.85
203 204 1.137675 GAAAATGGGATCAAGCTGCCC 59.862 52.381 7.15 7.15 42.38 5.36
204 205 1.039233 AAATGGGATCAAGCTGCCCG 61.039 55.000 0.00 0.00 45.08 6.13
205 206 1.925285 AATGGGATCAAGCTGCCCGA 61.925 55.000 0.00 0.00 45.08 5.14
206 207 1.925285 ATGGGATCAAGCTGCCCGAA 61.925 55.000 0.00 0.00 45.08 4.30
207 208 1.378514 GGGATCAAGCTGCCCGAAA 60.379 57.895 0.00 0.00 31.06 3.46
208 209 1.379642 GGGATCAAGCTGCCCGAAAG 61.380 60.000 0.00 0.00 31.06 2.62
222 223 1.523758 CGAAAGGAAACTGGACCCTG 58.476 55.000 0.00 0.00 42.68 4.45
223 224 1.071699 CGAAAGGAAACTGGACCCTGA 59.928 52.381 0.00 0.00 42.68 3.86
224 225 2.290323 CGAAAGGAAACTGGACCCTGAT 60.290 50.000 0.00 0.00 42.68 2.90
236 237 1.942657 GACCCTGATACGTACGCTACA 59.057 52.381 16.72 11.51 0.00 2.74
243 244 5.972973 CCTGATACGTACGCTACAACAATAA 59.027 40.000 16.72 0.00 0.00 1.40
251 252 5.609533 ACGCTACAACAATAAGGGAGTAT 57.390 39.130 0.00 0.00 0.00 2.12
253 254 7.299246 ACGCTACAACAATAAGGGAGTATAT 57.701 36.000 0.00 0.00 0.00 0.86
258 259 3.939066 ACAATAAGGGAGTATATGCGGC 58.061 45.455 0.00 0.00 0.00 6.53
424 425 0.466189 CCCATCCCAAATCACCGGAG 60.466 60.000 9.46 0.00 0.00 4.63
425 426 1.103398 CCATCCCAAATCACCGGAGC 61.103 60.000 9.46 0.00 0.00 4.70
426 427 0.107017 CATCCCAAATCACCGGAGCT 60.107 55.000 9.46 0.00 0.00 4.09
427 428 0.181350 ATCCCAAATCACCGGAGCTC 59.819 55.000 9.46 4.71 0.00 4.09
428 429 1.815421 CCCAAATCACCGGAGCTCG 60.815 63.158 9.46 3.03 38.88 5.03
429 430 1.218047 CCAAATCACCGGAGCTCGA 59.782 57.895 9.46 0.00 42.43 4.04
430 431 1.084370 CCAAATCACCGGAGCTCGAC 61.084 60.000 9.46 0.00 42.43 4.20
431 432 0.389817 CAAATCACCGGAGCTCGACA 60.390 55.000 9.46 0.00 42.43 4.35
432 433 0.108615 AAATCACCGGAGCTCGACAG 60.109 55.000 9.46 0.00 42.43 3.51
433 434 0.965866 AATCACCGGAGCTCGACAGA 60.966 55.000 9.46 3.84 42.43 3.41
434 435 0.753479 ATCACCGGAGCTCGACAGAT 60.753 55.000 9.46 6.12 42.43 2.90
435 436 1.064946 CACCGGAGCTCGACAGATC 59.935 63.158 9.46 0.00 42.43 2.75
440 441 1.439644 GAGCTCGACAGATCCACCC 59.560 63.158 0.00 0.00 0.00 4.61
448 449 0.246635 ACAGATCCACCCGTTTCTCG 59.753 55.000 0.00 0.00 39.52 4.04
575 581 4.747529 CGACGTTTCCCGACCCCC 62.748 72.222 0.00 0.00 40.70 5.40
599 607 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
600 608 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
601 609 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
602 610 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
603 611 4.596585 CCACCACCACCACCACCC 62.597 72.222 0.00 0.00 0.00 4.61
604 612 3.498071 CACCACCACCACCACCCT 61.498 66.667 0.00 0.00 0.00 4.34
722 730 2.630580 GACGAATCCTATTGAGCTCCCT 59.369 50.000 12.15 0.30 0.00 4.20
723 731 3.041946 ACGAATCCTATTGAGCTCCCTT 58.958 45.455 12.15 0.00 0.00 3.95
725 733 3.556004 CGAATCCTATTGAGCTCCCTTCC 60.556 52.174 12.15 0.00 0.00 3.46
726 734 1.807814 TCCTATTGAGCTCCCTTCCC 58.192 55.000 12.15 0.00 0.00 3.97
791 801 3.267900 TCGCCGATCGATTTCTTCC 57.732 52.632 18.66 0.00 43.16 3.46
847 877 0.321830 GGTTGGTTAACTAGCCGGCA 60.322 55.000 31.54 14.00 36.99 5.69
878 908 1.473434 CCGACCCTGTTTCATAGGCTC 60.473 57.143 0.00 0.00 33.86 4.70
879 909 1.473434 CGACCCTGTTTCATAGGCTCC 60.473 57.143 0.00 0.00 33.86 4.70
942 974 0.670854 GTCTGCCTCCGAGGTGAAAC 60.671 60.000 16.09 6.06 37.80 2.78
955 987 0.823356 GTGAAACCCAAGCCAGAGCA 60.823 55.000 0.00 0.00 43.56 4.26
956 988 0.823356 TGAAACCCAAGCCAGAGCAC 60.823 55.000 0.00 0.00 43.56 4.40
961 993 0.323178 CCCAAGCCAGAGCACAAGAT 60.323 55.000 0.00 0.00 43.56 2.40
1051 1083 0.108472 CATCTCGCACCTCAAGCAGA 60.108 55.000 0.00 0.00 0.00 4.26
1156 1188 3.123804 CCGGTAAGAAGAATCACATCCG 58.876 50.000 0.00 0.00 36.00 4.18
1158 1190 3.738281 CGGTAAGAAGAATCACATCCGCT 60.738 47.826 0.00 0.00 0.00 5.52
1167 1199 0.172578 TCACATCCGCTTACCGTCTG 59.827 55.000 0.00 0.00 34.38 3.51
1179 1215 0.913205 ACCGTCTGCTCCTCTCTCTA 59.087 55.000 0.00 0.00 0.00 2.43
1187 1223 5.045578 GTCTGCTCCTCTCTCTATATCTCCT 60.046 48.000 0.00 0.00 0.00 3.69
1204 1240 1.746615 CTGCCGGTGACTTGATGGG 60.747 63.158 1.90 0.00 0.00 4.00
1214 1250 0.687354 ACTTGATGGGCTGACGAACT 59.313 50.000 0.00 0.00 0.00 3.01
1241 1293 1.134848 TCTGTTTTTGTGGGTTGCAGC 60.135 47.619 0.00 0.00 0.00 5.25
1309 1361 3.077907 CTGTTCGTGGGGGTGGAT 58.922 61.111 0.00 0.00 0.00 3.41
1604 1656 3.670377 GTCCCAACCTGCCAACGC 61.670 66.667 0.00 0.00 0.00 4.84
1663 1715 5.163893 CGCACGTCCACATAGTATTTTCTTT 60.164 40.000 0.00 0.00 0.00 2.52
1731 1794 1.532505 CGATGGCCAATTTCTTCAGCG 60.533 52.381 10.96 0.00 0.00 5.18
1810 1873 2.163818 TTGGCCTCGTACAGTTTCAG 57.836 50.000 3.32 0.00 0.00 3.02
1857 1924 5.278463 GACTAGGTCATCTTTTGCTTTGCAA 60.278 40.000 0.00 0.00 38.42 4.08
1917 1984 7.429633 ACAGAATCTCCTGAGTTAATCATACG 58.570 38.462 0.00 0.00 37.28 3.06
1924 1991 5.043903 CCTGAGTTAATCATACGACTGTGG 58.956 45.833 0.00 0.00 37.28 4.17
1962 2032 5.452078 TGCCTTAACAAAAGTTCCAGATG 57.548 39.130 0.00 0.00 0.00 2.90
1979 2049 6.417258 TCCAGATGAAGATTAAATGTGCAGA 58.583 36.000 0.00 0.00 0.00 4.26
1980 2050 6.885918 TCCAGATGAAGATTAAATGTGCAGAA 59.114 34.615 0.00 0.00 0.00 3.02
2040 2110 7.644945 TCAATATTATCTGCGAAATTTGCTGTG 59.355 33.333 6.77 0.00 33.56 3.66
2056 2126 2.681706 CTGTGGCTAGACAGTGAAGTG 58.318 52.381 0.00 0.00 38.88 3.16
2066 2142 2.545946 GACAGTGAAGTGGCTTGTTCTC 59.454 50.000 0.00 0.00 0.00 2.87
2090 2170 1.009078 CACGGTGCATAGGACACATG 58.991 55.000 0.00 0.00 39.87 3.21
2097 2177 3.620374 GTGCATAGGACACATGTTCTGAG 59.380 47.826 2.86 0.00 37.96 3.35
2099 2179 4.256920 GCATAGGACACATGTTCTGAGTT 58.743 43.478 2.86 0.00 34.10 3.01
2100 2180 4.331168 GCATAGGACACATGTTCTGAGTTC 59.669 45.833 2.86 0.00 34.10 3.01
2101 2181 5.728471 CATAGGACACATGTTCTGAGTTCT 58.272 41.667 2.86 0.00 37.89 3.01
2102 2182 4.000331 AGGACACATGTTCTGAGTTCTG 58.000 45.455 0.00 0.00 33.48 3.02
2103 2183 3.643320 AGGACACATGTTCTGAGTTCTGA 59.357 43.478 0.00 0.00 33.48 3.27
2104 2184 3.743396 GGACACATGTTCTGAGTTCTGAC 59.257 47.826 0.00 0.00 0.00 3.51
2105 2185 4.502259 GGACACATGTTCTGAGTTCTGACT 60.502 45.833 0.00 0.00 39.32 3.41
2120 2200 2.092429 TCTGACTCTGCTTTGGTTTGGT 60.092 45.455 0.00 0.00 0.00 3.67
2408 2497 4.704833 GACTGCTGCTTCCCGCCA 62.705 66.667 0.00 0.00 38.05 5.69
2486 2575 4.379243 CCGCAGTGAAGCCGGAGT 62.379 66.667 5.05 0.00 32.44 3.85
2488 2577 3.426568 GCAGTGAAGCCGGAGTGC 61.427 66.667 5.05 5.05 0.00 4.40
2489 2578 3.114616 CAGTGAAGCCGGAGTGCG 61.115 66.667 5.05 0.00 36.02 5.34
2490 2579 4.379243 AGTGAAGCCGGAGTGCGG 62.379 66.667 20.08 20.08 36.02 5.69
2491 2580 4.373116 GTGAAGCCGGAGTGCGGA 62.373 66.667 28.78 1.95 36.02 5.54
2492 2581 4.373116 TGAAGCCGGAGTGCGGAC 62.373 66.667 28.78 17.68 36.02 4.79
2493 2582 4.373116 GAAGCCGGAGTGCGGACA 62.373 66.667 28.78 0.00 36.02 4.02
2524 2613 2.517450 CCGAATCGTTCAGCTCGCC 61.517 63.158 0.82 0.00 0.00 5.54
2622 2718 5.785599 CGCTGCGCTATTCTTTAATTGATAC 59.214 40.000 9.88 0.00 0.00 2.24
2624 2720 7.012358 GCTGCGCTATTCTTTAATTGATACTC 58.988 38.462 9.73 0.00 0.00 2.59
2625 2721 7.421530 TGCGCTATTCTTTAATTGATACTCC 57.578 36.000 9.73 0.00 0.00 3.85
2626 2722 7.217200 TGCGCTATTCTTTAATTGATACTCCT 58.783 34.615 9.73 0.00 0.00 3.69
2627 2723 8.364894 TGCGCTATTCTTTAATTGATACTCCTA 58.635 33.333 9.73 0.00 0.00 2.94
2628 2724 8.648968 GCGCTATTCTTTAATTGATACTCCTAC 58.351 37.037 0.00 0.00 0.00 3.18
2629 2725 9.915629 CGCTATTCTTTAATTGATACTCCTACT 57.084 33.333 0.00 0.00 0.00 2.57
2659 2758 5.862924 TGATAATTAATTAGCTCAGCCGC 57.137 39.130 20.77 0.00 30.46 6.53
2674 2773 1.026718 GCCGCAGTGCATTCTTAGGT 61.027 55.000 16.83 0.00 0.00 3.08
2679 2778 3.485877 CGCAGTGCATTCTTAGGTTTAGC 60.486 47.826 16.83 0.00 0.00 3.09
2694 2793 6.135819 AGGTTTAGCCAGGTAAATGTAACT 57.864 37.500 5.43 0.00 40.61 2.24
2707 2806 1.440618 TGTAACTCCATGGGTGTGGT 58.559 50.000 13.02 1.30 40.27 4.16
2715 2814 1.475751 CCATGGGTGTGGTGATCTAGC 60.476 57.143 2.85 0.00 34.46 3.42
2717 2816 2.543037 TGGGTGTGGTGATCTAGCTA 57.457 50.000 0.00 0.00 0.00 3.32
2718 2817 2.388735 TGGGTGTGGTGATCTAGCTAG 58.611 52.381 15.01 15.01 0.00 3.42
2719 2818 1.069358 GGGTGTGGTGATCTAGCTAGC 59.931 57.143 16.35 6.62 0.00 3.42
2721 2820 3.223435 GGTGTGGTGATCTAGCTAGCTA 58.777 50.000 22.85 22.85 0.00 3.32
2722 2821 3.254657 GGTGTGGTGATCTAGCTAGCTAG 59.745 52.174 36.20 36.20 45.38 3.42
2743 2842 4.662278 AGCACCTTGGCTTGTAAATAGAA 58.338 39.130 0.00 0.00 42.71 2.10
2744 2843 5.076873 AGCACCTTGGCTTGTAAATAGAAA 58.923 37.500 0.00 0.00 42.71 2.52
2746 2845 6.036470 GCACCTTGGCTTGTAAATAGAAATC 58.964 40.000 0.00 0.00 0.00 2.17
2747 2846 6.350110 GCACCTTGGCTTGTAAATAGAAATCA 60.350 38.462 0.00 0.00 0.00 2.57
2748 2847 7.029563 CACCTTGGCTTGTAAATAGAAATCAC 58.970 38.462 0.00 0.00 0.00 3.06
2749 2848 6.719370 ACCTTGGCTTGTAAATAGAAATCACA 59.281 34.615 0.00 0.00 0.00 3.58
2750 2849 7.397192 ACCTTGGCTTGTAAATAGAAATCACAT 59.603 33.333 0.00 0.00 0.00 3.21
2763 2862 8.948631 ATAGAAATCACATTATCAGTCGTTGT 57.051 30.769 0.00 0.00 0.00 3.32
2764 2863 7.672983 AGAAATCACATTATCAGTCGTTGTT 57.327 32.000 0.00 0.00 0.00 2.83
2765 2864 7.521529 AGAAATCACATTATCAGTCGTTGTTG 58.478 34.615 0.00 0.00 0.00 3.33
2766 2865 6.801539 AATCACATTATCAGTCGTTGTTGT 57.198 33.333 0.00 0.00 0.00 3.32
2767 2866 7.899178 AATCACATTATCAGTCGTTGTTGTA 57.101 32.000 0.00 0.00 0.00 2.41
2774 2873 1.710249 CAGTCGTTGTTGTACGTACGG 59.290 52.381 21.06 1.43 42.01 4.02
2775 2874 1.052287 GTCGTTGTTGTACGTACGGG 58.948 55.000 21.06 6.25 42.01 5.28
2776 2875 0.662970 TCGTTGTTGTACGTACGGGC 60.663 55.000 21.06 12.04 42.01 6.13
2777 2876 0.938637 CGTTGTTGTACGTACGGGCA 60.939 55.000 21.06 14.59 36.80 5.36
2778 2877 1.216122 GTTGTTGTACGTACGGGCAA 58.784 50.000 21.06 19.43 0.00 4.52
2781 2880 1.068281 TGTTGTACGTACGGGCAAAGA 59.932 47.619 21.06 10.63 0.00 2.52
2798 2897 4.020307 GCAAAGAAAGGGAATCATTTGGGA 60.020 41.667 0.00 0.00 0.00 4.37
2801 2900 4.347607 AGAAAGGGAATCATTTGGGAGTG 58.652 43.478 0.00 0.00 0.00 3.51
2804 2903 2.023695 AGGGAATCATTTGGGAGTGCAT 60.024 45.455 0.00 0.00 0.00 3.96
2819 2922 5.053145 GGAGTGCATTCTAAGATCGATGTT 58.947 41.667 12.86 12.86 0.00 2.71
2821 2924 4.272018 AGTGCATTCTAAGATCGATGTTGC 59.728 41.667 17.42 12.75 0.00 4.17
2823 2926 4.271776 TGCATTCTAAGATCGATGTTGCTG 59.728 41.667 17.42 9.98 0.00 4.41
2840 2943 2.478831 GCTGCTGCAAGATACTACTCC 58.521 52.381 11.11 0.00 39.41 3.85
2841 2944 2.102252 GCTGCTGCAAGATACTACTCCT 59.898 50.000 11.11 0.00 39.41 3.69
2842 2945 3.319405 GCTGCTGCAAGATACTACTCCTA 59.681 47.826 11.11 0.00 39.41 2.94
2843 2946 4.558496 GCTGCTGCAAGATACTACTCCTAG 60.558 50.000 11.11 0.00 39.41 3.02
2844 2947 3.891977 TGCTGCAAGATACTACTCCTAGG 59.108 47.826 0.82 0.82 34.07 3.02
2845 2948 3.257127 GCTGCAAGATACTACTCCTAGGG 59.743 52.174 9.46 2.03 34.07 3.53
2864 2967 1.666189 GGAGTAGGAACATTTCGCTGC 59.334 52.381 0.00 0.00 0.00 5.25
2873 2976 2.950433 ACATTTCGCTGCTTCATTTGG 58.050 42.857 0.00 0.00 0.00 3.28
2877 2980 1.135315 CGCTGCTTCATTTGGACGG 59.865 57.895 0.00 0.00 0.00 4.79
2911 3042 4.756135 GGGTTTGTGTAGGAATAAACGTGA 59.244 41.667 0.00 0.00 34.68 4.35
2912 3043 5.239087 GGGTTTGTGTAGGAATAAACGTGAA 59.761 40.000 0.00 0.00 34.68 3.18
2913 3044 6.238703 GGGTTTGTGTAGGAATAAACGTGAAA 60.239 38.462 0.00 0.00 34.68 2.69
2914 3045 7.364970 GGTTTGTGTAGGAATAAACGTGAAAT 58.635 34.615 0.00 0.00 34.68 2.17
2915 3046 7.863877 GGTTTGTGTAGGAATAAACGTGAAATT 59.136 33.333 0.00 0.00 34.68 1.82
2916 3047 9.240159 GTTTGTGTAGGAATAAACGTGAAATTT 57.760 29.630 0.00 0.00 0.00 1.82
2917 3048 9.453325 TTTGTGTAGGAATAAACGTGAAATTTC 57.547 29.630 11.41 11.41 0.00 2.17
2919 3050 8.286800 TGTGTAGGAATAAACGTGAAATTTCAG 58.713 33.333 21.05 16.25 37.98 3.02
2974 3134 2.962569 CTCTGGAGTCGTTGCGGA 59.037 61.111 0.00 0.00 0.00 5.54
2992 3152 1.609555 GGATTTGGCAACCGTTGTACA 59.390 47.619 12.77 9.40 0.00 2.90
3013 3173 4.187694 CAGTATTTCTCTGCTCTGGAACC 58.812 47.826 0.00 0.00 0.00 3.62
3096 3273 1.000496 GTCGGGAACTTTCTCACGAGT 60.000 52.381 0.00 0.00 32.19 4.18
3108 3285 2.285488 TCTCACGAGTGATCGATTCGAG 59.715 50.000 21.32 14.83 39.91 4.04
3122 3299 2.578163 TTCGAGCTGGCCGATTCAGG 62.578 60.000 0.00 0.00 35.84 3.86
3123 3300 2.903357 GAGCTGGCCGATTCAGGA 59.097 61.111 0.00 0.00 33.16 3.86
3132 3309 1.303309 CCGATTCAGGATCACTTGGC 58.697 55.000 0.00 0.00 34.23 4.52
3198 3375 5.414454 TGGAAGGTGATTTCGGTTTGATTAG 59.586 40.000 0.00 0.00 0.00 1.73
3200 3377 5.880054 AGGTGATTTCGGTTTGATTAGTG 57.120 39.130 0.00 0.00 0.00 2.74
3234 3420 1.815003 CTGGGATCTGCAACTTTGTCC 59.185 52.381 0.00 0.00 0.00 4.02
3263 3449 0.519175 GTAGTTCATGCGTGCAAGCG 60.519 55.000 19.67 6.22 40.67 4.68
3267 3453 0.660005 TTCATGCGTGCAAGCGTTTC 60.660 50.000 17.05 0.00 40.67 2.78
3360 3547 3.554692 GCAGTGACGGGCGAATCG 61.555 66.667 0.00 0.00 0.00 3.34
3401 3588 2.710902 CCGTCGGCTGACCATGAGA 61.711 63.158 19.98 0.00 42.37 3.27
3402 3589 1.226802 CGTCGGCTGACCATGAGAG 60.227 63.158 19.98 0.00 42.37 3.20
3421 3608 0.453390 GAAAAGATTGGCCAGCTCGG 59.547 55.000 5.11 0.00 38.11 4.63
3426 3613 1.686325 GATTGGCCAGCTCGGGAGTA 61.686 60.000 5.11 0.00 34.06 2.59
3427 3614 1.972660 ATTGGCCAGCTCGGGAGTAC 61.973 60.000 5.11 0.00 34.06 2.73
3428 3615 4.208686 GGCCAGCTCGGGAGTACG 62.209 72.222 0.00 0.00 34.06 3.67
3429 3616 3.138798 GCCAGCTCGGGAGTACGA 61.139 66.667 0.00 0.00 41.13 3.43
3430 3617 2.799371 CCAGCTCGGGAGTACGAC 59.201 66.667 0.00 0.00 38.06 4.34
3431 3618 2.772691 CCAGCTCGGGAGTACGACC 61.773 68.421 0.00 4.00 38.06 4.79
3432 3619 2.044555 CAGCTCGGGAGTACGACCA 61.045 63.158 12.68 0.00 38.06 4.02
3433 3620 1.076923 AGCTCGGGAGTACGACCAT 60.077 57.895 12.68 0.00 38.06 3.55
3434 3621 1.065928 GCTCGGGAGTACGACCATG 59.934 63.158 12.68 6.07 38.06 3.66
3435 3622 1.664321 GCTCGGGAGTACGACCATGT 61.664 60.000 12.68 0.00 38.06 3.21
3436 3623 0.815734 CTCGGGAGTACGACCATGTT 59.184 55.000 12.68 0.00 38.06 2.71
3437 3624 0.528924 TCGGGAGTACGACCATGTTG 59.471 55.000 12.68 0.00 38.06 3.33
3438 3625 1.082117 CGGGAGTACGACCATGTTGC 61.082 60.000 12.68 0.00 35.47 4.17
3439 3626 0.036765 GGGAGTACGACCATGTTGCA 60.037 55.000 12.68 0.00 0.00 4.08
3440 3627 1.609580 GGGAGTACGACCATGTTGCAA 60.610 52.381 12.68 0.00 0.00 4.08
3441 3628 2.147958 GGAGTACGACCATGTTGCAAA 58.852 47.619 0.00 0.00 0.00 3.68
3455 3642 4.066710 GTTGCAAACCTCGTCTCAATAC 57.933 45.455 0.00 0.00 42.21 1.89
3456 3643 2.333926 TGCAAACCTCGTCTCAATACG 58.666 47.619 0.00 0.00 44.19 3.06
3457 3644 5.610520 GTTGCAAACCTCGTCTCAATACGA 61.611 45.833 0.00 0.00 44.66 3.43
3458 3645 6.861905 GTTGCAAACCTCGTCTCAATACGAT 61.862 44.000 0.00 0.00 43.53 3.73
3459 3646 8.553921 GTTGCAAACCTCGTCTCAATACGATC 62.554 46.154 0.00 0.00 43.53 3.69
3466 3653 3.796717 TCGTCTCAATACGATCATGTTGC 59.203 43.478 0.00 0.00 46.29 4.17
3467 3654 3.551485 CGTCTCAATACGATCATGTTGCA 59.449 43.478 0.00 0.00 45.68 4.08
3468 3655 4.032786 CGTCTCAATACGATCATGTTGCAA 59.967 41.667 0.00 0.00 45.68 4.08
3469 3656 5.445806 CGTCTCAATACGATCATGTTGCAAA 60.446 40.000 0.00 0.00 45.68 3.68
3470 3657 7.417133 CGTCTCAATACGATCATGTTGCAAAC 61.417 42.308 0.00 0.00 46.11 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.798959 GCACTGAGATCTGTACACAATTTTTC 59.201 38.462 0.00 0.00 0.00 2.29
1 2 6.262944 TGCACTGAGATCTGTACACAATTTTT 59.737 34.615 0.00 0.00 0.00 1.94
2 3 5.764686 TGCACTGAGATCTGTACACAATTTT 59.235 36.000 0.00 0.00 0.00 1.82
3 4 5.308014 TGCACTGAGATCTGTACACAATTT 58.692 37.500 0.00 0.00 0.00 1.82
4 5 4.898320 TGCACTGAGATCTGTACACAATT 58.102 39.130 0.00 0.00 0.00 2.32
5 6 4.541973 TGCACTGAGATCTGTACACAAT 57.458 40.909 0.00 0.00 0.00 2.71
6 7 4.039124 TCTTGCACTGAGATCTGTACACAA 59.961 41.667 0.00 0.00 0.00 3.33
7 8 3.573967 TCTTGCACTGAGATCTGTACACA 59.426 43.478 0.00 0.00 0.00 3.72
8 9 4.179926 TCTTGCACTGAGATCTGTACAC 57.820 45.455 0.00 0.00 0.00 2.90
9 10 4.463891 TGATCTTGCACTGAGATCTGTACA 59.536 41.667 21.68 0.00 46.19 2.90
10 11 5.003692 TGATCTTGCACTGAGATCTGTAC 57.996 43.478 21.68 3.08 46.19 2.90
11 12 5.665916 TTGATCTTGCACTGAGATCTGTA 57.334 39.130 21.68 9.35 46.19 2.74
12 13 4.548451 TTGATCTTGCACTGAGATCTGT 57.452 40.909 21.68 0.00 46.19 3.41
13 14 4.333095 CCTTTGATCTTGCACTGAGATCTG 59.667 45.833 21.68 13.98 46.19 2.90
14 15 4.224594 TCCTTTGATCTTGCACTGAGATCT 59.775 41.667 21.68 0.00 46.19 2.75
15 16 4.511527 TCCTTTGATCTTGCACTGAGATC 58.488 43.478 16.69 16.69 46.21 2.75
16 17 4.564782 TCCTTTGATCTTGCACTGAGAT 57.435 40.909 0.00 0.00 36.60 2.75
17 18 4.356405 TTCCTTTGATCTTGCACTGAGA 57.644 40.909 0.00 0.00 0.00 3.27
18 19 6.939132 ATATTCCTTTGATCTTGCACTGAG 57.061 37.500 0.00 0.00 0.00 3.35
19 20 7.568349 ACTATATTCCTTTGATCTTGCACTGA 58.432 34.615 0.00 0.00 0.00 3.41
20 21 7.798596 ACTATATTCCTTTGATCTTGCACTG 57.201 36.000 0.00 0.00 0.00 3.66
21 22 9.717942 GATACTATATTCCTTTGATCTTGCACT 57.282 33.333 0.00 0.00 0.00 4.40
22 23 8.651588 CGATACTATATTCCTTTGATCTTGCAC 58.348 37.037 0.00 0.00 0.00 4.57
23 24 8.585018 TCGATACTATATTCCTTTGATCTTGCA 58.415 33.333 0.00 0.00 0.00 4.08
24 25 8.988064 TCGATACTATATTCCTTTGATCTTGC 57.012 34.615 0.00 0.00 0.00 4.01
27 28 9.397280 TCGATCGATACTATATTCCTTTGATCT 57.603 33.333 15.15 0.00 0.00 2.75
28 29 9.658475 CTCGATCGATACTATATTCCTTTGATC 57.342 37.037 19.78 0.00 0.00 2.92
29 30 9.397280 TCTCGATCGATACTATATTCCTTTGAT 57.603 33.333 19.78 0.00 0.00 2.57
30 31 8.666573 GTCTCGATCGATACTATATTCCTTTGA 58.333 37.037 22.24 7.30 0.00 2.69
31 32 8.451748 TGTCTCGATCGATACTATATTCCTTTG 58.548 37.037 27.29 8.86 0.00 2.77
32 33 8.563123 TGTCTCGATCGATACTATATTCCTTT 57.437 34.615 27.29 0.00 0.00 3.11
33 34 8.740123 ATGTCTCGATCGATACTATATTCCTT 57.260 34.615 27.29 1.91 0.00 3.36
34 35 9.833917 TTATGTCTCGATCGATACTATATTCCT 57.166 33.333 27.29 9.83 0.00 3.36
35 36 9.866936 GTTATGTCTCGATCGATACTATATTCC 57.133 37.037 27.29 13.64 0.00 3.01
36 37 9.570507 CGTTATGTCTCGATCGATACTATATTC 57.429 37.037 27.29 17.83 0.00 1.75
37 38 9.310716 TCGTTATGTCTCGATCGATACTATATT 57.689 33.333 27.29 13.58 0.00 1.28
38 39 8.868635 TCGTTATGTCTCGATCGATACTATAT 57.131 34.615 27.29 17.93 0.00 0.86
39 40 8.693542 TTCGTTATGTCTCGATCGATACTATA 57.306 34.615 27.29 20.55 36.01 1.31
40 41 7.331440 ACTTCGTTATGTCTCGATCGATACTAT 59.669 37.037 27.29 21.30 36.01 2.12
41 42 6.644181 ACTTCGTTATGTCTCGATCGATACTA 59.356 38.462 27.29 17.27 36.01 1.82
42 43 5.466058 ACTTCGTTATGTCTCGATCGATACT 59.534 40.000 27.29 17.83 36.01 2.12
43 44 5.677936 ACTTCGTTATGTCTCGATCGATAC 58.322 41.667 22.61 22.61 36.01 2.24
44 45 5.695363 AGACTTCGTTATGTCTCGATCGATA 59.305 40.000 19.78 8.96 39.04 2.92
45 46 4.512198 AGACTTCGTTATGTCTCGATCGAT 59.488 41.667 19.78 6.20 39.04 3.59
46 47 3.869832 AGACTTCGTTATGTCTCGATCGA 59.130 43.478 18.32 18.32 39.04 3.59
47 48 4.198473 AGACTTCGTTATGTCTCGATCG 57.802 45.455 9.36 9.36 39.04 3.69
53 54 4.001652 TCGACTGAGACTTCGTTATGTCT 58.998 43.478 0.00 0.00 45.06 3.41
54 55 4.337985 TCGACTGAGACTTCGTTATGTC 57.662 45.455 0.00 0.00 36.60 3.06
55 56 4.156190 ACATCGACTGAGACTTCGTTATGT 59.844 41.667 0.00 0.00 36.60 2.29
56 57 4.663166 ACATCGACTGAGACTTCGTTATG 58.337 43.478 0.00 0.00 36.60 1.90
57 58 4.494362 CGACATCGACTGAGACTTCGTTAT 60.494 45.833 0.00 0.00 43.02 1.89
58 59 3.181523 CGACATCGACTGAGACTTCGTTA 60.182 47.826 0.00 0.00 43.02 3.18
59 60 2.412977 CGACATCGACTGAGACTTCGTT 60.413 50.000 0.00 0.00 43.02 3.85
60 61 1.128878 CGACATCGACTGAGACTTCGT 59.871 52.381 0.00 0.00 43.02 3.85
61 62 1.393883 TCGACATCGACTGAGACTTCG 59.606 52.381 0.00 0.00 44.22 3.79
73 74 2.096013 TGCTAAGTCTCAGTCGACATCG 59.904 50.000 19.50 5.80 36.38 3.84
74 75 3.766676 TGCTAAGTCTCAGTCGACATC 57.233 47.619 19.50 3.03 36.38 3.06
75 76 4.521130 TTTGCTAAGTCTCAGTCGACAT 57.479 40.909 19.50 0.00 36.38 3.06
76 77 4.316205 TTTTGCTAAGTCTCAGTCGACA 57.684 40.909 19.50 0.00 36.38 4.35
77 78 5.405571 TCAATTTTGCTAAGTCTCAGTCGAC 59.594 40.000 7.70 7.70 0.00 4.20
78 79 5.538118 TCAATTTTGCTAAGTCTCAGTCGA 58.462 37.500 0.00 0.00 0.00 4.20
79 80 5.845985 TCAATTTTGCTAAGTCTCAGTCG 57.154 39.130 0.00 0.00 0.00 4.18
80 81 9.468532 AATTTTCAATTTTGCTAAGTCTCAGTC 57.531 29.630 0.00 0.00 0.00 3.51
117 118 9.823647 CCGCCTCTATATCAAAATATAAGACAT 57.176 33.333 0.00 0.00 31.46 3.06
118 119 8.812972 ACCGCCTCTATATCAAAATATAAGACA 58.187 33.333 0.00 0.00 31.46 3.41
130 131 9.470399 TCATATTTTACTACCGCCTCTATATCA 57.530 33.333 0.00 0.00 0.00 2.15
131 132 9.733219 GTCATATTTTACTACCGCCTCTATATC 57.267 37.037 0.00 0.00 0.00 1.63
132 133 8.404000 CGTCATATTTTACTACCGCCTCTATAT 58.596 37.037 0.00 0.00 0.00 0.86
133 134 7.607607 TCGTCATATTTTACTACCGCCTCTATA 59.392 37.037 0.00 0.00 0.00 1.31
134 135 6.432162 TCGTCATATTTTACTACCGCCTCTAT 59.568 38.462 0.00 0.00 0.00 1.98
135 136 5.764686 TCGTCATATTTTACTACCGCCTCTA 59.235 40.000 0.00 0.00 0.00 2.43
136 137 4.581824 TCGTCATATTTTACTACCGCCTCT 59.418 41.667 0.00 0.00 0.00 3.69
137 138 4.863491 TCGTCATATTTTACTACCGCCTC 58.137 43.478 0.00 0.00 0.00 4.70
138 139 4.795308 GCTCGTCATATTTTACTACCGCCT 60.795 45.833 0.00 0.00 0.00 5.52
139 140 3.427863 GCTCGTCATATTTTACTACCGCC 59.572 47.826 0.00 0.00 0.00 6.13
140 141 4.046462 TGCTCGTCATATTTTACTACCGC 58.954 43.478 0.00 0.00 0.00 5.68
141 142 5.038683 TGTGCTCGTCATATTTTACTACCG 58.961 41.667 0.00 0.00 0.00 4.02
142 143 6.534079 AGTTGTGCTCGTCATATTTTACTACC 59.466 38.462 0.00 0.00 0.00 3.18
143 144 7.274904 TCAGTTGTGCTCGTCATATTTTACTAC 59.725 37.037 0.00 0.00 0.00 2.73
144 145 7.317390 TCAGTTGTGCTCGTCATATTTTACTA 58.683 34.615 0.00 0.00 0.00 1.82
145 146 6.163476 TCAGTTGTGCTCGTCATATTTTACT 58.837 36.000 0.00 0.00 0.00 2.24
146 147 6.403333 TCAGTTGTGCTCGTCATATTTTAC 57.597 37.500 0.00 0.00 0.00 2.01
147 148 5.063438 GCTCAGTTGTGCTCGTCATATTTTA 59.937 40.000 0.00 0.00 0.00 1.52
148 149 4.142816 GCTCAGTTGTGCTCGTCATATTTT 60.143 41.667 0.00 0.00 0.00 1.82
149 150 3.372206 GCTCAGTTGTGCTCGTCATATTT 59.628 43.478 0.00 0.00 0.00 1.40
150 151 2.932614 GCTCAGTTGTGCTCGTCATATT 59.067 45.455 0.00 0.00 0.00 1.28
151 152 2.094026 TGCTCAGTTGTGCTCGTCATAT 60.094 45.455 7.57 0.00 35.73 1.78
152 153 1.272212 TGCTCAGTTGTGCTCGTCATA 59.728 47.619 7.57 0.00 35.73 2.15
153 154 0.033920 TGCTCAGTTGTGCTCGTCAT 59.966 50.000 7.57 0.00 35.73 3.06
154 155 0.033920 ATGCTCAGTTGTGCTCGTCA 59.966 50.000 7.57 0.00 35.73 4.35
155 156 0.441533 CATGCTCAGTTGTGCTCGTC 59.558 55.000 7.57 0.00 35.73 4.20
156 157 0.250038 ACATGCTCAGTTGTGCTCGT 60.250 50.000 7.57 2.55 35.73 4.18
157 158 0.870393 AACATGCTCAGTTGTGCTCG 59.130 50.000 7.57 2.02 35.73 5.03
158 159 3.047796 CAAAACATGCTCAGTTGTGCTC 58.952 45.455 7.57 0.00 35.73 4.26
159 160 2.223876 CCAAAACATGCTCAGTTGTGCT 60.224 45.455 7.57 0.00 33.76 4.40
160 161 2.129607 CCAAAACATGCTCAGTTGTGC 58.870 47.619 0.00 0.00 33.76 4.57
161 162 3.117794 CACCAAAACATGCTCAGTTGTG 58.882 45.455 0.00 0.00 34.66 3.33
162 163 2.101249 CCACCAAAACATGCTCAGTTGT 59.899 45.455 0.00 0.00 0.00 3.32
163 164 2.361757 TCCACCAAAACATGCTCAGTTG 59.638 45.455 0.00 0.00 0.00 3.16
164 165 2.665165 TCCACCAAAACATGCTCAGTT 58.335 42.857 0.00 0.00 0.00 3.16
165 166 2.363306 TCCACCAAAACATGCTCAGT 57.637 45.000 0.00 0.00 0.00 3.41
166 167 3.731652 TTTCCACCAAAACATGCTCAG 57.268 42.857 0.00 0.00 0.00 3.35
167 168 4.378774 CATTTTCCACCAAAACATGCTCA 58.621 39.130 0.00 0.00 36.78 4.26
168 169 3.747529 CCATTTTCCACCAAAACATGCTC 59.252 43.478 0.00 0.00 36.78 4.26
169 170 3.496515 CCCATTTTCCACCAAAACATGCT 60.497 43.478 0.00 0.00 36.78 3.79
170 171 2.813172 CCCATTTTCCACCAAAACATGC 59.187 45.455 0.00 0.00 36.78 4.06
171 172 4.348863 TCCCATTTTCCACCAAAACATG 57.651 40.909 0.00 0.00 36.78 3.21
172 173 4.596643 TGATCCCATTTTCCACCAAAACAT 59.403 37.500 0.00 0.00 36.78 2.71
173 174 3.969976 TGATCCCATTTTCCACCAAAACA 59.030 39.130 0.00 0.00 36.78 2.83
174 175 4.615588 TGATCCCATTTTCCACCAAAAC 57.384 40.909 0.00 0.00 36.78 2.43
175 176 4.504689 GCTTGATCCCATTTTCCACCAAAA 60.505 41.667 0.00 0.00 38.38 2.44
176 177 3.007831 GCTTGATCCCATTTTCCACCAAA 59.992 43.478 0.00 0.00 0.00 3.28
177 178 2.566724 GCTTGATCCCATTTTCCACCAA 59.433 45.455 0.00 0.00 0.00 3.67
178 179 2.178580 GCTTGATCCCATTTTCCACCA 58.821 47.619 0.00 0.00 0.00 4.17
179 180 2.167075 CAGCTTGATCCCATTTTCCACC 59.833 50.000 0.00 0.00 0.00 4.61
180 181 2.417787 GCAGCTTGATCCCATTTTCCAC 60.418 50.000 0.00 0.00 0.00 4.02
181 182 1.826720 GCAGCTTGATCCCATTTTCCA 59.173 47.619 0.00 0.00 0.00 3.53
182 183 1.137675 GGCAGCTTGATCCCATTTTCC 59.862 52.381 0.00 0.00 0.00 3.13
183 184 1.137675 GGGCAGCTTGATCCCATTTTC 59.862 52.381 5.48 0.00 39.82 2.29
184 185 1.197812 GGGCAGCTTGATCCCATTTT 58.802 50.000 5.48 0.00 39.82 1.82
185 186 1.039233 CGGGCAGCTTGATCCCATTT 61.039 55.000 9.87 0.00 40.05 2.32
186 187 1.454479 CGGGCAGCTTGATCCCATT 60.454 57.895 9.87 0.00 40.05 3.16
187 188 1.925285 TTCGGGCAGCTTGATCCCAT 61.925 55.000 9.87 0.00 40.05 4.00
188 189 2.135903 TTTCGGGCAGCTTGATCCCA 62.136 55.000 9.87 0.00 40.05 4.37
189 190 1.378514 TTTCGGGCAGCTTGATCCC 60.379 57.895 0.00 0.00 36.68 3.85
190 191 1.379642 CCTTTCGGGCAGCTTGATCC 61.380 60.000 0.00 0.00 0.00 3.36
191 192 0.392998 TCCTTTCGGGCAGCTTGATC 60.393 55.000 0.00 0.00 34.39 2.92
192 193 0.038166 TTCCTTTCGGGCAGCTTGAT 59.962 50.000 0.00 0.00 34.39 2.57
193 194 0.179004 TTTCCTTTCGGGCAGCTTGA 60.179 50.000 0.00 0.00 34.39 3.02
194 195 0.039165 GTTTCCTTTCGGGCAGCTTG 60.039 55.000 0.00 0.00 34.39 4.01
195 196 0.178990 AGTTTCCTTTCGGGCAGCTT 60.179 50.000 0.00 0.00 34.39 3.74
196 197 0.890996 CAGTTTCCTTTCGGGCAGCT 60.891 55.000 0.00 0.00 34.39 4.24
197 198 1.581447 CAGTTTCCTTTCGGGCAGC 59.419 57.895 0.00 0.00 34.39 5.25
198 199 0.250727 TCCAGTTTCCTTTCGGGCAG 60.251 55.000 0.00 0.00 34.39 4.85
199 200 0.536460 GTCCAGTTTCCTTTCGGGCA 60.536 55.000 0.00 0.00 34.39 5.36
200 201 1.241990 GGTCCAGTTTCCTTTCGGGC 61.242 60.000 0.00 0.00 34.39 6.13
201 202 0.608308 GGGTCCAGTTTCCTTTCGGG 60.608 60.000 0.00 0.00 0.00 5.14
202 203 0.400594 AGGGTCCAGTTTCCTTTCGG 59.599 55.000 0.00 0.00 0.00 4.30
203 204 1.071699 TCAGGGTCCAGTTTCCTTTCG 59.928 52.381 0.00 0.00 0.00 3.46
204 205 2.951229 TCAGGGTCCAGTTTCCTTTC 57.049 50.000 0.00 0.00 0.00 2.62
205 206 3.307480 CGTATCAGGGTCCAGTTTCCTTT 60.307 47.826 0.00 0.00 0.00 3.11
206 207 2.236395 CGTATCAGGGTCCAGTTTCCTT 59.764 50.000 0.00 0.00 0.00 3.36
207 208 1.831736 CGTATCAGGGTCCAGTTTCCT 59.168 52.381 0.00 0.00 0.00 3.36
208 209 1.553704 ACGTATCAGGGTCCAGTTTCC 59.446 52.381 0.00 0.00 0.00 3.13
209 210 3.733077 CGTACGTATCAGGGTCCAGTTTC 60.733 52.174 7.22 0.00 0.00 2.78
210 211 2.165030 CGTACGTATCAGGGTCCAGTTT 59.835 50.000 7.22 0.00 0.00 2.66
211 212 1.747355 CGTACGTATCAGGGTCCAGTT 59.253 52.381 7.22 0.00 0.00 3.16
212 213 1.386533 CGTACGTATCAGGGTCCAGT 58.613 55.000 7.22 0.00 0.00 4.00
213 214 0.030369 GCGTACGTATCAGGGTCCAG 59.970 60.000 17.90 0.00 0.00 3.86
214 215 0.394762 AGCGTACGTATCAGGGTCCA 60.395 55.000 17.90 0.00 0.00 4.02
215 216 1.265365 GTAGCGTACGTATCAGGGTCC 59.735 57.143 17.90 0.00 0.00 4.46
216 217 1.942657 TGTAGCGTACGTATCAGGGTC 59.057 52.381 17.90 0.00 0.00 4.46
217 218 2.042686 TGTAGCGTACGTATCAGGGT 57.957 50.000 17.90 0.00 0.00 4.34
218 219 2.097954 TGTTGTAGCGTACGTATCAGGG 59.902 50.000 17.90 0.00 0.00 4.45
219 220 3.409851 TGTTGTAGCGTACGTATCAGG 57.590 47.619 17.90 0.00 0.00 3.86
220 221 6.141844 CCTTATTGTTGTAGCGTACGTATCAG 59.858 42.308 17.90 0.00 0.00 2.90
221 222 5.972973 CCTTATTGTTGTAGCGTACGTATCA 59.027 40.000 17.90 10.32 0.00 2.15
222 223 5.400485 CCCTTATTGTTGTAGCGTACGTATC 59.600 44.000 17.90 7.83 0.00 2.24
223 224 5.067674 TCCCTTATTGTTGTAGCGTACGTAT 59.932 40.000 17.90 8.71 0.00 3.06
224 225 4.397730 TCCCTTATTGTTGTAGCGTACGTA 59.602 41.667 17.90 5.34 0.00 3.57
236 237 4.041691 AGCCGCATATACTCCCTTATTGTT 59.958 41.667 0.00 0.00 0.00 2.83
243 244 0.969894 GTCAGCCGCATATACTCCCT 59.030 55.000 0.00 0.00 0.00 4.20
251 252 1.078497 CCCACTTGTCAGCCGCATA 60.078 57.895 0.00 0.00 0.00 3.14
253 254 3.555324 TCCCACTTGTCAGCCGCA 61.555 61.111 0.00 0.00 0.00 5.69
258 259 0.604780 CTGCTGGTCCCACTTGTCAG 60.605 60.000 0.00 0.00 0.00 3.51
291 292 3.007940 TGGTTTAGCTCTACACACATGCT 59.992 43.478 0.00 0.00 37.72 3.79
295 296 2.288579 CCGTGGTTTAGCTCTACACACA 60.289 50.000 0.00 0.00 32.58 3.72
296 297 2.288640 ACCGTGGTTTAGCTCTACACAC 60.289 50.000 0.00 0.00 32.58 3.82
297 298 1.965643 ACCGTGGTTTAGCTCTACACA 59.034 47.619 0.00 0.00 32.58 3.72
362 363 0.108804 GGAACGCTTGGATGTCTCGA 60.109 55.000 0.00 0.00 0.00 4.04
363 364 0.108615 AGGAACGCTTGGATGTCTCG 60.109 55.000 0.00 0.00 0.00 4.04
399 400 2.362375 ATTTGGGATGGGCGCGTT 60.362 55.556 8.43 0.00 0.00 4.84
404 405 2.127232 CCGGTGATTTGGGATGGGC 61.127 63.158 0.00 0.00 0.00 5.36
407 408 0.107017 AGCTCCGGTGATTTGGGATG 60.107 55.000 7.92 0.00 0.00 3.51
424 425 2.105128 CGGGTGGATCTGTCGAGC 59.895 66.667 0.00 0.00 0.00 5.03
425 426 0.246635 AAACGGGTGGATCTGTCGAG 59.753 55.000 0.00 0.00 0.00 4.04
426 427 0.245539 GAAACGGGTGGATCTGTCGA 59.754 55.000 0.00 0.00 0.00 4.20
427 428 0.246635 AGAAACGGGTGGATCTGTCG 59.753 55.000 0.00 0.00 0.00 4.35
428 429 1.736032 CGAGAAACGGGTGGATCTGTC 60.736 57.143 0.00 0.00 38.46 3.51
429 430 0.246635 CGAGAAACGGGTGGATCTGT 59.753 55.000 0.00 0.00 38.46 3.41
430 431 1.084370 GCGAGAAACGGGTGGATCTG 61.084 60.000 0.00 0.00 42.83 2.90
431 432 1.218316 GCGAGAAACGGGTGGATCT 59.782 57.895 0.00 0.00 42.83 2.75
432 433 1.814169 GGCGAGAAACGGGTGGATC 60.814 63.158 0.00 0.00 42.83 3.36
433 434 2.267961 GGCGAGAAACGGGTGGAT 59.732 61.111 0.00 0.00 42.83 3.41
434 435 3.235481 TGGCGAGAAACGGGTGGA 61.235 61.111 0.00 0.00 42.83 4.02
435 436 3.047877 GTGGCGAGAAACGGGTGG 61.048 66.667 0.00 0.00 42.83 4.61
436 437 2.027625 GAGTGGCGAGAAACGGGTG 61.028 63.158 0.00 0.00 42.83 4.61
437 438 2.342648 GAGTGGCGAGAAACGGGT 59.657 61.111 0.00 0.00 42.83 5.28
438 439 2.809601 CGAGTGGCGAGAAACGGG 60.810 66.667 0.00 0.00 44.57 5.28
439 440 3.479269 GCGAGTGGCGAGAAACGG 61.479 66.667 0.00 0.00 44.57 4.44
483 484 3.610791 GAGGAAAACGCGGGCAAGC 62.611 63.158 12.47 0.00 0.00 4.01
575 581 2.113139 GTGGTGGTGGTGGAGTGG 59.887 66.667 0.00 0.00 0.00 4.00
599 607 0.252927 AAGGAAGGAGGAGGAGGGTG 60.253 60.000 0.00 0.00 0.00 4.61
600 608 0.252927 CAAGGAAGGAGGAGGAGGGT 60.253 60.000 0.00 0.00 0.00 4.34
601 609 0.043334 TCAAGGAAGGAGGAGGAGGG 59.957 60.000 0.00 0.00 0.00 4.30
602 610 1.199615 GTCAAGGAAGGAGGAGGAGG 58.800 60.000 0.00 0.00 0.00 4.30
603 611 1.199615 GGTCAAGGAAGGAGGAGGAG 58.800 60.000 0.00 0.00 0.00 3.69
604 612 0.252742 GGGTCAAGGAAGGAGGAGGA 60.253 60.000 0.00 0.00 0.00 3.71
722 730 4.020617 CGGCACAGGCAGAGGGAA 62.021 66.667 0.00 0.00 43.71 3.97
757 767 2.435059 GACCAGGTTCAGCCGAGC 60.435 66.667 0.00 0.00 43.70 5.03
862 892 0.183731 GGGGAGCCTATGAAACAGGG 59.816 60.000 0.00 0.00 33.44 4.45
867 897 1.705186 GCCTATGGGGAGCCTATGAAA 59.295 52.381 0.00 0.00 37.23 2.69
878 908 2.659428 CAAGAAAGGAAGCCTATGGGG 58.341 52.381 0.00 0.00 31.13 4.96
879 909 2.659428 CCAAGAAAGGAAGCCTATGGG 58.341 52.381 0.00 0.00 31.13 4.00
942 974 0.323178 ATCTTGTGCTCTGGCTTGGG 60.323 55.000 0.00 0.00 39.59 4.12
943 975 1.093159 GATCTTGTGCTCTGGCTTGG 58.907 55.000 0.00 0.00 39.59 3.61
944 976 1.093159 GGATCTTGTGCTCTGGCTTG 58.907 55.000 0.00 0.00 39.59 4.01
945 977 0.990374 AGGATCTTGTGCTCTGGCTT 59.010 50.000 0.00 0.00 39.59 4.35
946 978 0.540923 GAGGATCTTGTGCTCTGGCT 59.459 55.000 0.00 0.00 41.66 4.75
949 981 2.619147 CAGTGAGGATCTTGTGCTCTG 58.381 52.381 0.00 0.00 44.86 3.35
955 987 4.936802 ACTAGTACCAGTGAGGATCTTGT 58.063 43.478 0.00 0.00 41.22 3.16
1156 1188 0.101579 GAGAGGAGCAGACGGTAAGC 59.898 60.000 0.00 0.00 0.00 3.09
1158 1190 1.282447 AGAGAGAGGAGCAGACGGTAA 59.718 52.381 0.00 0.00 0.00 2.85
1167 1199 3.947834 GCAGGAGATATAGAGAGAGGAGC 59.052 52.174 0.00 0.00 0.00 4.70
1179 1215 1.414181 CAAGTCACCGGCAGGAGATAT 59.586 52.381 10.86 0.00 39.29 1.63
1187 1223 2.350895 CCCATCAAGTCACCGGCA 59.649 61.111 0.00 0.00 0.00 5.69
1204 1240 0.108424 AGAGCATCCAGTTCGTCAGC 60.108 55.000 0.00 0.00 33.66 4.26
1214 1250 1.962807 CCCACAAAAACAGAGCATCCA 59.037 47.619 0.00 0.00 33.66 3.41
1309 1361 3.003173 CCCGGGTGCTTCTCCTCA 61.003 66.667 14.18 0.00 0.00 3.86
1644 1696 8.451748 GGTCTTGAAAGAAAATACTATGTGGAC 58.548 37.037 0.00 0.00 36.68 4.02
1663 1715 2.478894 GCGAAGAAATTCGTGGTCTTGA 59.521 45.455 11.52 0.00 45.45 3.02
1731 1794 3.982475 TCACGCTATGGAGAATCATGAC 58.018 45.455 0.00 0.00 36.25 3.06
1810 1873 2.768492 GCCCACAGCTAGCACATGC 61.768 63.158 18.83 8.91 38.99 4.06
1833 1900 4.216257 TGCAAAGCAAAAGATGACCTAGTC 59.784 41.667 0.00 0.00 34.76 2.59
1857 1924 1.377725 CCAAGGCGGCAGACAAGAT 60.378 57.895 13.08 0.00 0.00 2.40
1917 1984 2.740981 CAATCAGCTTGAGACCACAGTC 59.259 50.000 0.00 0.00 43.89 3.51
1924 1991 2.641305 AGGCATCAATCAGCTTGAGAC 58.359 47.619 0.00 0.00 46.71 3.36
2011 2081 9.754382 AGCAAATTTCGCAGATAATATTGAAAT 57.246 25.926 12.88 1.25 37.57 2.17
2014 2084 7.644945 CACAGCAAATTTCGCAGATAATATTGA 59.355 33.333 12.88 0.00 35.04 2.57
2028 2098 3.503748 ACTGTCTAGCCACAGCAAATTTC 59.496 43.478 10.67 0.00 46.81 2.17
2040 2110 0.610687 AGCCACTTCACTGTCTAGCC 59.389 55.000 0.00 0.00 0.00 3.93
2056 2126 1.576421 CGTGCCAAGAGAACAAGCC 59.424 57.895 0.00 0.00 0.00 4.35
2066 2142 1.078497 TCCTATGCACCGTGCCAAG 60.078 57.895 20.67 16.26 44.23 3.61
2097 2177 3.243201 CCAAACCAAAGCAGAGTCAGAAC 60.243 47.826 0.00 0.00 0.00 3.01
2099 2179 2.092429 ACCAAACCAAAGCAGAGTCAGA 60.092 45.455 0.00 0.00 0.00 3.27
2100 2180 2.291741 GACCAAACCAAAGCAGAGTCAG 59.708 50.000 0.00 0.00 0.00 3.51
2101 2181 2.297701 GACCAAACCAAAGCAGAGTCA 58.702 47.619 0.00 0.00 0.00 3.41
2102 2182 2.291741 CTGACCAAACCAAAGCAGAGTC 59.708 50.000 0.00 0.00 0.00 3.36
2103 2183 2.301346 CTGACCAAACCAAAGCAGAGT 58.699 47.619 0.00 0.00 0.00 3.24
2104 2184 1.610522 CCTGACCAAACCAAAGCAGAG 59.389 52.381 0.00 0.00 0.00 3.35
2105 2185 1.064017 ACCTGACCAAACCAAAGCAGA 60.064 47.619 0.00 0.00 0.00 4.26
2106 2186 1.402787 ACCTGACCAAACCAAAGCAG 58.597 50.000 0.00 0.00 0.00 4.24
2107 2187 1.754226 GAACCTGACCAAACCAAAGCA 59.246 47.619 0.00 0.00 0.00 3.91
2108 2188 2.031870 AGAACCTGACCAAACCAAAGC 58.968 47.619 0.00 0.00 0.00 3.51
2120 2200 0.319555 CGAACGCCTTCAGAACCTGA 60.320 55.000 0.00 0.00 38.87 3.86
2484 2573 0.108138 GGCTAATCTGTGTCCGCACT 60.108 55.000 0.00 0.00 45.44 4.40
2485 2574 1.421410 CGGCTAATCTGTGTCCGCAC 61.421 60.000 0.00 0.00 45.44 5.34
2486 2575 1.153647 CGGCTAATCTGTGTCCGCA 60.154 57.895 0.00 0.00 33.36 5.69
2488 2577 0.527817 GGTCGGCTAATCTGTGTCCG 60.528 60.000 0.00 0.00 41.30 4.79
2489 2578 0.527817 CGGTCGGCTAATCTGTGTCC 60.528 60.000 0.00 0.00 0.00 4.02
2490 2579 0.454600 TCGGTCGGCTAATCTGTGTC 59.545 55.000 0.00 0.00 0.00 3.67
2491 2580 0.892755 TTCGGTCGGCTAATCTGTGT 59.107 50.000 0.00 0.00 0.00 3.72
2492 2581 2.128035 GATTCGGTCGGCTAATCTGTG 58.872 52.381 7.95 0.00 0.00 3.66
2493 2582 1.269102 CGATTCGGTCGGCTAATCTGT 60.269 52.381 11.85 0.00 46.47 3.41
2524 2613 4.534168 CATCCGTCTACGTATGTACCTTG 58.466 47.826 0.00 0.00 37.74 3.61
2622 2718 9.717942 AATTAATTATCAAGCTGCTAGTAGGAG 57.282 33.333 14.01 14.01 36.68 3.69
2627 2723 9.213799 GAGCTAATTAATTATCAAGCTGCTAGT 57.786 33.333 22.08 3.62 36.28 2.57
2628 2724 9.212641 TGAGCTAATTAATTATCAAGCTGCTAG 57.787 33.333 22.08 5.24 36.28 3.42
2629 2725 9.212641 CTGAGCTAATTAATTATCAAGCTGCTA 57.787 33.333 22.08 11.00 36.28 3.49
2630 2726 7.308469 GCTGAGCTAATTAATTATCAAGCTGCT 60.308 37.037 22.08 17.43 36.28 4.24
2631 2727 6.800892 GCTGAGCTAATTAATTATCAAGCTGC 59.199 38.462 22.08 17.23 36.28 5.25
2632 2728 7.303998 GGCTGAGCTAATTAATTATCAAGCTG 58.696 38.462 22.08 12.91 36.28 4.24
2659 2758 4.009675 TGGCTAAACCTAAGAATGCACTG 58.990 43.478 0.00 0.00 40.22 3.66
2674 2773 6.129414 TGGAGTTACATTTACCTGGCTAAA 57.871 37.500 0.00 0.00 0.00 1.85
2679 2778 4.207165 CCCATGGAGTTACATTTACCTGG 58.793 47.826 15.22 0.00 0.00 4.45
2694 2793 2.118679 CTAGATCACCACACCCATGGA 58.881 52.381 15.22 0.00 43.02 3.41
2715 2814 1.065854 ACAAGCCAAGGTGCTAGCTAG 60.066 52.381 16.84 16.84 41.80 3.42
2717 2816 0.984230 TACAAGCCAAGGTGCTAGCT 59.016 50.000 17.23 0.00 41.80 3.32
2718 2817 1.821216 TTACAAGCCAAGGTGCTAGC 58.179 50.000 8.10 8.10 41.80 3.42
2719 2818 5.428253 TCTATTTACAAGCCAAGGTGCTAG 58.572 41.667 0.00 0.00 41.80 3.42
2721 2820 4.301072 TCTATTTACAAGCCAAGGTGCT 57.699 40.909 0.00 0.00 45.43 4.40
2722 2821 5.385509 TTTCTATTTACAAGCCAAGGTGC 57.614 39.130 0.00 0.00 0.00 5.01
2723 2822 7.029563 GTGATTTCTATTTACAAGCCAAGGTG 58.970 38.462 0.00 0.00 0.00 4.00
2724 2823 6.719370 TGTGATTTCTATTTACAAGCCAAGGT 59.281 34.615 0.00 0.00 0.00 3.50
2725 2824 7.156876 TGTGATTTCTATTTACAAGCCAAGG 57.843 36.000 0.00 0.00 0.00 3.61
2743 2842 6.801539 ACAACAACGACTGATAATGTGATT 57.198 33.333 0.00 0.00 0.00 2.57
2744 2843 6.034577 CGTACAACAACGACTGATAATGTGAT 59.965 38.462 0.00 0.00 45.68 3.06
2746 2845 5.118050 ACGTACAACAACGACTGATAATGTG 59.882 40.000 3.10 0.00 45.68 3.21
2747 2846 5.224888 ACGTACAACAACGACTGATAATGT 58.775 37.500 3.10 0.00 45.68 2.71
2748 2847 5.756950 ACGTACAACAACGACTGATAATG 57.243 39.130 3.10 0.00 45.68 1.90
2749 2848 5.509272 CGTACGTACAACAACGACTGATAAT 59.491 40.000 24.50 0.00 45.68 1.28
2750 2849 4.845598 CGTACGTACAACAACGACTGATAA 59.154 41.667 24.50 0.00 45.68 1.75
2752 2851 3.228749 CGTACGTACAACAACGACTGAT 58.771 45.455 24.50 0.00 45.68 2.90
2754 2853 1.710249 CCGTACGTACAACAACGACTG 59.290 52.381 24.50 4.92 45.68 3.51
2755 2854 1.334960 CCCGTACGTACAACAACGACT 60.335 52.381 24.50 0.00 45.68 4.18
2756 2855 1.052287 CCCGTACGTACAACAACGAC 58.948 55.000 24.50 0.00 45.68 4.34
2757 2856 0.662970 GCCCGTACGTACAACAACGA 60.663 55.000 24.50 0.00 45.68 3.85
2759 2858 1.216122 TTGCCCGTACGTACAACAAC 58.784 50.000 24.50 9.81 0.00 3.32
2760 2859 1.865970 CTTTGCCCGTACGTACAACAA 59.134 47.619 24.50 20.03 0.00 2.83
2762 2861 1.782044 TCTTTGCCCGTACGTACAAC 58.218 50.000 24.50 13.45 0.00 3.32
2763 2862 2.522836 TTCTTTGCCCGTACGTACAA 57.477 45.000 24.50 14.57 0.00 2.41
2764 2863 2.406130 CTTTCTTTGCCCGTACGTACA 58.594 47.619 24.50 8.95 0.00 2.90
2765 2864 1.728425 CCTTTCTTTGCCCGTACGTAC 59.272 52.381 15.90 15.90 0.00 3.67
2766 2865 1.338011 CCCTTTCTTTGCCCGTACGTA 60.338 52.381 15.21 0.00 0.00 3.57
2767 2866 0.604511 CCCTTTCTTTGCCCGTACGT 60.605 55.000 15.21 0.00 0.00 3.57
2774 2873 4.256110 CCAAATGATTCCCTTTCTTTGCC 58.744 43.478 0.00 0.00 0.00 4.52
2775 2874 4.020307 TCCCAAATGATTCCCTTTCTTTGC 60.020 41.667 0.00 0.00 0.00 3.68
2776 2875 5.246883 ACTCCCAAATGATTCCCTTTCTTTG 59.753 40.000 0.00 0.00 0.00 2.77
2777 2876 5.246883 CACTCCCAAATGATTCCCTTTCTTT 59.753 40.000 0.00 0.00 0.00 2.52
2778 2877 4.774200 CACTCCCAAATGATTCCCTTTCTT 59.226 41.667 0.00 0.00 0.00 2.52
2781 2880 2.833943 GCACTCCCAAATGATTCCCTTT 59.166 45.455 0.00 0.00 0.00 3.11
2798 2897 4.272018 GCAACATCGATCTTAGAATGCACT 59.728 41.667 0.00 0.00 0.00 4.40
2801 2900 4.770287 CAGCAACATCGATCTTAGAATGC 58.230 43.478 0.00 1.84 0.00 3.56
2804 2903 3.867493 CAGCAGCAACATCGATCTTAGAA 59.133 43.478 0.00 0.00 0.00 2.10
2821 2924 4.022416 CCTAGGAGTAGTATCTTGCAGCAG 60.022 50.000 1.05 0.00 0.00 4.24
2823 2926 3.257127 CCCTAGGAGTAGTATCTTGCAGC 59.743 52.174 11.48 0.00 0.00 5.25
2839 2942 3.492829 GCGAAATGTTCCTACTCCCTAGG 60.493 52.174 0.06 0.06 43.54 3.02
2840 2943 3.385111 AGCGAAATGTTCCTACTCCCTAG 59.615 47.826 0.00 0.00 0.00 3.02
2841 2944 3.132289 CAGCGAAATGTTCCTACTCCCTA 59.868 47.826 0.00 0.00 0.00 3.53
2842 2945 2.093447 CAGCGAAATGTTCCTACTCCCT 60.093 50.000 0.00 0.00 0.00 4.20
2843 2946 2.280628 CAGCGAAATGTTCCTACTCCC 58.719 52.381 0.00 0.00 0.00 4.30
2844 2947 1.666189 GCAGCGAAATGTTCCTACTCC 59.334 52.381 0.00 0.00 0.00 3.85
2845 2948 2.622436 AGCAGCGAAATGTTCCTACTC 58.378 47.619 0.00 0.00 0.00 2.59
2860 2963 0.109597 CACCGTCCAAATGAAGCAGC 60.110 55.000 0.00 0.00 0.00 5.25
2864 2967 1.399727 GCGAACACCGTCCAAATGAAG 60.400 52.381 0.00 0.00 41.15 3.02
2974 3134 2.303175 ACTGTACAACGGTTGCCAAAT 58.697 42.857 20.20 3.60 32.95 2.32
2984 3144 5.287274 CAGAGCAGAGAAATACTGTACAACG 59.713 44.000 0.00 0.00 37.64 4.10
2992 3152 3.118956 CGGTTCCAGAGCAGAGAAATACT 60.119 47.826 0.00 0.00 0.00 2.12
3013 3173 0.931702 TACCAACGCACACACTTTCG 59.068 50.000 0.00 0.00 0.00 3.46
3068 3245 2.092049 AGAAAGTTCCCGACCCAGTTTT 60.092 45.455 0.00 0.00 0.00 2.43
3096 3273 1.068083 GGCCAGCTCGAATCGATCA 59.932 57.895 5.59 0.00 34.61 2.92
3108 3285 1.146930 TGATCCTGAATCGGCCAGC 59.853 57.895 2.24 0.00 37.17 4.85
3132 3309 1.553248 TCCATCCACCGTTCCACTTAG 59.447 52.381 0.00 0.00 0.00 2.18
3198 3375 1.081242 CAGCCATGACGCAAACCAC 60.081 57.895 0.00 0.00 0.00 4.16
3200 3377 2.568090 CCAGCCATGACGCAAACC 59.432 61.111 0.00 0.00 0.00 3.27
3263 3449 3.371285 GCGGTAGAAGAAGGATGTGAAAC 59.629 47.826 0.00 0.00 37.35 2.78
3267 3453 2.969628 AGCGGTAGAAGAAGGATGTG 57.030 50.000 0.00 0.00 0.00 3.21
3360 3547 1.205820 GTAGCGCCGTCCAACAAAC 59.794 57.895 2.29 0.00 0.00 2.93
3384 3571 1.226802 CTCTCATGGTCAGCCGACG 60.227 63.158 0.00 0.00 43.61 5.12
3401 3588 1.457346 CGAGCTGGCCAATCTTTTCT 58.543 50.000 7.01 0.00 0.00 2.52
3402 3589 0.453390 CCGAGCTGGCCAATCTTTTC 59.547 55.000 7.01 0.00 0.00 2.29
3421 3608 1.803334 TTGCAACATGGTCGTACTCC 58.197 50.000 0.00 0.00 0.00 3.85
3426 3613 0.951558 GAGGTTTGCAACATGGTCGT 59.048 50.000 0.00 0.00 0.00 4.34
3427 3614 0.110238 CGAGGTTTGCAACATGGTCG 60.110 55.000 0.00 0.00 0.00 4.79
3428 3615 0.951558 ACGAGGTTTGCAACATGGTC 59.048 50.000 0.00 0.00 27.90 4.02
3429 3616 0.951558 GACGAGGTTTGCAACATGGT 59.048 50.000 0.00 0.00 36.84 3.55
3430 3617 1.197721 GAGACGAGGTTTGCAACATGG 59.802 52.381 0.00 0.00 0.00 3.66
3431 3618 1.872952 TGAGACGAGGTTTGCAACATG 59.127 47.619 0.00 0.00 0.00 3.21
3432 3619 2.254546 TGAGACGAGGTTTGCAACAT 57.745 45.000 0.00 0.00 0.00 2.71
3433 3620 2.031258 TTGAGACGAGGTTTGCAACA 57.969 45.000 0.00 0.00 0.00 3.33
3434 3621 3.423123 CGTATTGAGACGAGGTTTGCAAC 60.423 47.826 0.00 0.00 45.82 4.17
3435 3622 2.734606 CGTATTGAGACGAGGTTTGCAA 59.265 45.455 0.00 0.00 45.82 4.08
3436 3623 2.029739 TCGTATTGAGACGAGGTTTGCA 60.030 45.455 0.00 0.00 46.43 4.08
3437 3624 2.602878 TCGTATTGAGACGAGGTTTGC 58.397 47.619 0.00 0.00 46.43 3.68
3445 3632 3.551485 TGCAACATGATCGTATTGAGACG 59.449 43.478 10.15 0.00 44.29 4.18
3446 3633 5.469373 TTGCAACATGATCGTATTGAGAC 57.531 39.130 10.15 0.00 0.00 3.36
3447 3634 5.163764 GGTTTGCAACATGATCGTATTGAGA 60.164 40.000 10.15 0.00 0.00 3.27
3448 3635 5.030295 GGTTTGCAACATGATCGTATTGAG 58.970 41.667 10.15 0.00 0.00 3.02
3449 3636 4.699735 AGGTTTGCAACATGATCGTATTGA 59.300 37.500 10.15 0.00 0.00 2.57
3450 3637 4.985413 AGGTTTGCAACATGATCGTATTG 58.015 39.130 0.00 1.36 0.00 1.90
3451 3638 4.201812 CGAGGTTTGCAACATGATCGTATT 60.202 41.667 0.00 0.00 0.00 1.89
3452 3639 3.309682 CGAGGTTTGCAACATGATCGTAT 59.690 43.478 0.00 0.00 0.00 3.06
3453 3640 2.670905 CGAGGTTTGCAACATGATCGTA 59.329 45.455 0.00 0.00 0.00 3.43
3454 3641 1.464608 CGAGGTTTGCAACATGATCGT 59.535 47.619 0.00 0.00 0.00 3.73
3455 3642 1.464608 ACGAGGTTTGCAACATGATCG 59.535 47.619 0.00 7.84 33.69 3.69
3456 3643 3.236816 CAACGAGGTTTGCAACATGATC 58.763 45.455 0.00 0.00 0.00 2.92
3457 3644 3.287312 CAACGAGGTTTGCAACATGAT 57.713 42.857 0.00 0.00 0.00 2.45
3458 3645 2.772568 CAACGAGGTTTGCAACATGA 57.227 45.000 0.00 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.