Multiple sequence alignment - TraesCS5A01G319800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G319800 chr5A 100.000 5510 0 0 1 5510 533025315 533019806 0.000000e+00 10176.0
1 TraesCS5A01G319800 chr5A 91.111 135 12 0 5371 5505 533013646 533013512 3.390000e-42 183.0
2 TraesCS5A01G319800 chr5B 95.731 4357 141 18 535 4860 505485991 505481649 0.000000e+00 6974.0
3 TraesCS5A01G319800 chr5B 90.404 396 25 5 4856 5247 505481613 505481227 4.920000e-140 508.0
4 TraesCS5A01G319800 chr5B 85.861 488 46 12 924 1410 324259795 324260260 1.070000e-136 497.0
5 TraesCS5A01G319800 chr5B 88.798 366 35 5 1 361 505486357 505485993 1.410000e-120 444.0
6 TraesCS5A01G319800 chr5B 91.586 309 18 6 5202 5509 505481227 505480926 2.370000e-113 420.0
7 TraesCS5A01G319800 chr5B 90.667 150 13 1 367 515 478327990 478327841 1.210000e-46 198.0
8 TraesCS5A01G319800 chr5B 75.051 489 85 22 4947 5410 504810497 504810021 5.630000e-45 193.0
9 TraesCS5A01G319800 chr5B 75.573 262 55 9 32 286 28209374 28209633 2.700000e-23 121.0
10 TraesCS5A01G319800 chr5B 84.615 65 6 1 652 712 505485816 505485752 1.660000e-05 62.1
11 TraesCS5A01G319800 chr5D 97.604 3047 49 9 1826 4860 418073715 418070681 0.000000e+00 5201.0
12 TraesCS5A01G319800 chr5D 90.980 1286 79 17 557 1830 418075048 418073788 0.000000e+00 1698.0
13 TraesCS5A01G319800 chr5D 92.058 617 31 8 4856 5464 418070645 418070039 0.000000e+00 852.0
14 TraesCS5A01G319800 chr5D 90.244 369 32 4 1 366 418075507 418075140 3.860000e-131 479.0
15 TraesCS5A01G319800 chr5D 75.806 434 75 16 4999 5410 417620474 417620049 5.630000e-45 193.0
16 TraesCS5A01G319800 chr6B 84.857 350 37 9 1004 1353 14588790 14588457 6.840000e-89 339.0
17 TraesCS5A01G319800 chr2D 91.216 148 12 1 367 514 388169434 388169580 3.370000e-47 200.0
18 TraesCS5A01G319800 chr2D 84.314 153 19 4 367 516 591310961 591311111 1.600000e-30 145.0
19 TraesCS5A01G319800 chr3D 88.535 157 16 2 367 522 272494154 272494309 7.290000e-44 189.0
20 TraesCS5A01G319800 chr7B 87.662 154 19 0 366 519 595804587 595804740 4.390000e-41 180.0
21 TraesCS5A01G319800 chr7B 79.503 161 29 4 367 524 450639872 450639713 1.620000e-20 111.0
22 TraesCS5A01G319800 chr2B 89.076 119 9 4 400 514 588169091 588168973 1.600000e-30 145.0
23 TraesCS5A01G319800 chr1B 71.517 323 79 12 32 346 368205280 368205597 2.130000e-09 75.0
24 TraesCS5A01G319800 chr1A 83.333 72 12 0 444 515 85826214 85826143 3.560000e-07 67.6
25 TraesCS5A01G319800 chrUn 78.000 100 21 1 420 519 2050900 2050998 1.660000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G319800 chr5A 533019806 533025315 5509 True 10176.00 10176 100.0000 1 5510 1 chr5A.!!$R2 5509
1 TraesCS5A01G319800 chr5B 505480926 505486357 5431 True 1681.62 6974 90.2268 1 5509 5 chr5B.!!$R3 5508
2 TraesCS5A01G319800 chr5D 418070039 418075507 5468 True 2057.50 5201 92.7215 1 5464 4 chr5D.!!$R2 5463

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
430 436 0.179171 TAAGAGAAACTCCGCGAGCG 60.179 55.000 8.23 10.86 39.44 5.03 F
493 499 0.395586 AACTCCAGCAGCACAACCAA 60.396 50.000 0.00 0.00 0.00 3.67 F
597 668 0.518636 CTCATTTGCACCCACACTCG 59.481 55.000 0.00 0.00 0.00 4.18 F
1665 1743 0.036010 GCTGCTGTTAGGAGAAGCCA 60.036 55.000 1.31 0.00 38.57 4.75 F
1938 2103 1.217057 ATCCCAAGGGTGCTGATGGT 61.217 55.000 4.80 0.00 36.47 3.55 F
2750 2916 3.979501 AGAGGGCAATGGATTTGGTAT 57.020 42.857 0.00 0.00 35.75 2.73 F
2808 2974 2.141535 GCTATTGAGCGATCGAAGGT 57.858 50.000 21.57 0.00 39.39 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1464 1542 0.106708 TGCAGCTACGATTCCCATCC 59.893 55.000 0.00 0.00 0.00 3.51 R
1600 1678 0.468029 AAACCTGGCACCAAGTGAGG 60.468 55.000 0.00 0.08 35.23 3.86 R
1925 2090 0.620556 CTGGTTACCATCAGCACCCT 59.379 55.000 3.88 0.00 30.82 4.34 R
2750 2916 2.408271 AGCGCTTCATCATCTTTCCA 57.592 45.000 2.64 0.00 0.00 3.53 R
2808 2974 3.307691 CCCAAGGACAGCAGAATCTACAA 60.308 47.826 0.00 0.00 0.00 2.41 R
4305 4474 0.472471 GCCACGATTTATCCAGGGGA 59.528 55.000 0.00 0.00 35.55 4.81 R
4617 4795 0.680618 TTTCCAGGGTGCAAGCAATG 59.319 50.000 0.00 0.00 34.77 2.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.936498 ACTTTCGATGGCCATCTTTACG 59.064 45.455 36.51 26.31 35.72 3.18
51 52 4.304939 GTCCTACCCGAATTTCCTTATCG 58.695 47.826 0.00 0.00 36.39 2.92
70 71 7.044249 CCTTATCGACATGTTTAAGTACTCACG 60.044 40.741 0.00 0.00 0.00 4.35
87 88 2.911928 GCAGACCCCTAGGAAGCC 59.088 66.667 11.48 0.00 36.73 4.35
138 139 0.519519 TTGCGCCACAGATTTAACCG 59.480 50.000 4.18 0.00 0.00 4.44
148 149 6.371389 CCACAGATTTAACCGAGACTTTTTC 58.629 40.000 0.00 0.00 0.00 2.29
153 154 2.971901 AACCGAGACTTTTTCCCCAT 57.028 45.000 0.00 0.00 0.00 4.00
198 203 6.110707 CAGCCTTGAATTTTGCTCCATAAAT 58.889 36.000 0.00 0.00 30.08 1.40
224 230 5.167845 TCTTCAAAAACTTGAAAGCACCAC 58.832 37.500 2.27 0.00 40.07 4.16
249 255 0.758734 GGTGATCCCACATCCGATGA 59.241 55.000 15.47 0.00 44.93 2.92
294 300 3.143728 GTGTTTCGTTGGGTACTTGGAT 58.856 45.455 0.00 0.00 0.00 3.41
330 336 7.630242 TTTCAGCTCGAATATTTTCTGGAAT 57.370 32.000 0.00 0.00 32.32 3.01
338 344 6.889722 TCGAATATTTTCTGGAATCCCTTTGT 59.110 34.615 0.00 0.00 0.00 2.83
350 356 5.711976 GGAATCCCTTTGTTGAAGAAGATGA 59.288 40.000 0.00 0.00 37.57 2.92
351 357 6.209391 GGAATCCCTTTGTTGAAGAAGATGAA 59.791 38.462 0.00 0.00 37.57 2.57
352 358 7.255942 GGAATCCCTTTGTTGAAGAAGATGAAA 60.256 37.037 0.00 0.00 37.57 2.69
353 359 6.639632 TCCCTTTGTTGAAGAAGATGAAAG 57.360 37.500 0.00 0.00 37.57 2.62
354 360 6.364701 TCCCTTTGTTGAAGAAGATGAAAGA 58.635 36.000 0.00 0.00 37.57 2.52
355 361 7.006509 TCCCTTTGTTGAAGAAGATGAAAGAT 58.993 34.615 0.00 0.00 37.57 2.40
356 362 7.506938 TCCCTTTGTTGAAGAAGATGAAAGATT 59.493 33.333 0.00 0.00 37.57 2.40
357 363 8.146412 CCCTTTGTTGAAGAAGATGAAAGATTT 58.854 33.333 0.00 0.00 37.57 2.17
358 364 8.975439 CCTTTGTTGAAGAAGATGAAAGATTTG 58.025 33.333 0.00 0.00 37.57 2.32
359 365 7.935338 TTGTTGAAGAAGATGAAAGATTTGC 57.065 32.000 0.00 0.00 0.00 3.68
360 366 6.449698 TGTTGAAGAAGATGAAAGATTTGCC 58.550 36.000 0.00 0.00 0.00 4.52
361 367 6.040729 TGTTGAAGAAGATGAAAGATTTGCCA 59.959 34.615 0.00 0.00 0.00 4.92
362 368 6.845758 TGAAGAAGATGAAAGATTTGCCAT 57.154 33.333 0.00 0.00 0.00 4.40
363 369 7.943079 TGAAGAAGATGAAAGATTTGCCATA 57.057 32.000 0.00 0.00 0.00 2.74
364 370 7.993101 TGAAGAAGATGAAAGATTTGCCATAG 58.007 34.615 0.00 0.00 0.00 2.23
365 371 7.613022 TGAAGAAGATGAAAGATTTGCCATAGT 59.387 33.333 0.00 0.00 0.00 2.12
366 372 9.113838 GAAGAAGATGAAAGATTTGCCATAGTA 57.886 33.333 0.00 0.00 0.00 1.82
367 373 9.466497 AAGAAGATGAAAGATTTGCCATAGTAA 57.534 29.630 0.00 0.00 0.00 2.24
368 374 9.466497 AGAAGATGAAAGATTTGCCATAGTAAA 57.534 29.630 0.00 0.00 31.82 2.01
388 394 2.309136 AAATGAGACCAACCCAAGGG 57.691 50.000 2.91 2.91 42.03 3.95
389 395 0.251787 AATGAGACCAACCCAAGGGC 60.252 55.000 4.70 0.00 39.32 5.19
390 396 2.035783 GAGACCAACCCAAGGGCC 59.964 66.667 4.70 0.00 39.32 5.80
391 397 2.780924 AGACCAACCCAAGGGCCA 60.781 61.111 6.18 0.00 39.32 5.36
392 398 2.200092 GACCAACCCAAGGGCCAA 59.800 61.111 6.18 0.00 39.32 4.52
393 399 1.908299 GACCAACCCAAGGGCCAAG 60.908 63.158 6.18 0.00 39.32 3.61
394 400 3.313524 CCAACCCAAGGGCCAAGC 61.314 66.667 6.18 0.00 39.32 4.01
428 434 6.642683 TTTTTATAAGAGAAACTCCGCGAG 57.357 37.500 8.23 5.77 35.52 5.03
429 435 2.211353 ATAAGAGAAACTCCGCGAGC 57.789 50.000 8.23 0.00 32.04 5.03
430 436 0.179171 TAAGAGAAACTCCGCGAGCG 60.179 55.000 8.23 10.86 39.44 5.03
431 437 2.126424 GAGAAACTCCGCGAGCGT 60.126 61.111 8.23 0.00 37.81 5.07
432 438 1.733399 GAGAAACTCCGCGAGCGTT 60.733 57.895 8.23 4.59 37.81 4.84
433 439 1.945776 GAGAAACTCCGCGAGCGTTG 61.946 60.000 8.23 10.50 37.81 4.10
434 440 3.631049 GAAACTCCGCGAGCGTTGC 62.631 63.158 8.23 2.19 37.81 4.17
441 447 3.832171 GCGAGCGTTGCGAGTCAG 61.832 66.667 0.00 0.00 0.00 3.51
442 448 2.126850 CGAGCGTTGCGAGTCAGA 60.127 61.111 0.00 0.00 0.00 3.27
443 449 2.148982 CGAGCGTTGCGAGTCAGAG 61.149 63.158 0.00 0.00 0.00 3.35
444 450 2.431601 AGCGTTGCGAGTCAGAGC 60.432 61.111 0.00 0.00 0.00 4.09
445 451 3.482783 GCGTTGCGAGTCAGAGCC 61.483 66.667 0.00 0.00 0.00 4.70
446 452 3.175240 CGTTGCGAGTCAGAGCCG 61.175 66.667 0.00 0.00 0.00 5.52
447 453 2.258591 GTTGCGAGTCAGAGCCGA 59.741 61.111 0.00 0.00 0.00 5.54
448 454 1.803519 GTTGCGAGTCAGAGCCGAG 60.804 63.158 0.00 0.00 0.00 4.63
449 455 2.994671 TTGCGAGTCAGAGCCGAGG 61.995 63.158 0.00 0.00 0.00 4.63
450 456 4.863925 GCGAGTCAGAGCCGAGGC 62.864 72.222 5.89 5.89 42.33 4.70
477 483 4.410400 GGCGGGCTGGCTGTAACT 62.410 66.667 13.40 0.00 40.72 2.24
478 484 2.820037 GCGGGCTGGCTGTAACTC 60.820 66.667 11.96 0.00 0.00 3.01
479 485 2.125106 CGGGCTGGCTGTAACTCC 60.125 66.667 1.18 0.00 0.00 3.85
480 486 2.954684 CGGGCTGGCTGTAACTCCA 61.955 63.158 1.18 0.00 0.00 3.86
488 494 3.612517 CTGTAACTCCAGCAGCACA 57.387 52.632 0.00 0.00 0.00 4.57
489 495 1.882912 CTGTAACTCCAGCAGCACAA 58.117 50.000 0.00 0.00 0.00 3.33
490 496 1.532868 CTGTAACTCCAGCAGCACAAC 59.467 52.381 0.00 0.00 0.00 3.32
491 497 0.875059 GTAACTCCAGCAGCACAACC 59.125 55.000 0.00 0.00 0.00 3.77
492 498 0.472044 TAACTCCAGCAGCACAACCA 59.528 50.000 0.00 0.00 0.00 3.67
493 499 0.395586 AACTCCAGCAGCACAACCAA 60.396 50.000 0.00 0.00 0.00 3.67
494 500 1.103398 ACTCCAGCAGCACAACCAAC 61.103 55.000 0.00 0.00 0.00 3.77
495 501 2.121564 CTCCAGCAGCACAACCAACG 62.122 60.000 0.00 0.00 0.00 4.10
496 502 2.332514 CAGCAGCACAACCAACGG 59.667 61.111 0.00 0.00 0.00 4.44
497 503 2.906897 AGCAGCACAACCAACGGG 60.907 61.111 0.00 0.00 41.29 5.28
521 527 0.676782 CGCCCCGTCCTCAAGATTTT 60.677 55.000 0.00 0.00 0.00 1.82
563 569 4.084013 CCCGTCGCTTGACAATAAATATCC 60.084 45.833 0.00 0.00 43.03 2.59
571 641 6.486657 GCTTGACAATAAATATCCAGCACCTA 59.513 38.462 0.00 0.00 32.74 3.08
596 667 0.883833 CCTCATTTGCACCCACACTC 59.116 55.000 0.00 0.00 0.00 3.51
597 668 0.518636 CTCATTTGCACCCACACTCG 59.481 55.000 0.00 0.00 0.00 4.18
668 740 1.134098 AGACCCATCAATAAGGCACCG 60.134 52.381 0.00 0.00 0.00 4.94
702 774 1.736645 CGTCGTGGGCTTCGATTGT 60.737 57.895 7.63 0.00 39.45 2.71
706 778 1.001068 TCGTGGGCTTCGATTGTGTAA 59.999 47.619 0.00 0.00 32.30 2.41
749 821 3.829044 CGGCCCACACGTCCGATA 61.829 66.667 6.79 0.00 45.53 2.92
834 908 5.163301 CGATCTTTCCTGAATTCCTCCCTTA 60.163 44.000 2.27 0.00 0.00 2.69
1197 1274 2.279073 CCGCCTCACTCCCTAGGA 59.721 66.667 11.48 0.00 34.58 2.94
1217 1294 5.131067 AGGACACTTTTGTTAGAGAAACCC 58.869 41.667 0.00 0.00 35.47 4.11
1218 1295 4.277672 GGACACTTTTGTTAGAGAAACCCC 59.722 45.833 0.00 0.00 35.47 4.95
1219 1296 3.881089 ACACTTTTGTTAGAGAAACCCCG 59.119 43.478 0.00 0.00 37.27 5.73
1270 1347 3.555518 GCCATCGATTCTTAATTTCGGC 58.444 45.455 0.00 0.00 33.82 5.54
1293 1370 1.679898 GCTGCACCTAGGTTGGTCT 59.320 57.895 13.15 0.00 38.45 3.85
1303 1380 1.591863 GGTTGGTCTATCCGCGCTC 60.592 63.158 5.56 0.00 39.52 5.03
1318 1395 2.187946 CTCGGATTCGCTTGGGCT 59.812 61.111 0.00 0.00 36.09 5.19
1396 1473 2.675844 TCCGCCGTGTAGATTTGATTTG 59.324 45.455 0.00 0.00 0.00 2.32
1397 1474 2.418628 CCGCCGTGTAGATTTGATTTGT 59.581 45.455 0.00 0.00 0.00 2.83
1425 1502 6.753744 GGTTCAGGATTGTTATTCAGCAATTC 59.246 38.462 0.00 0.00 35.92 2.17
1464 1542 1.377725 CTGGGCACTGCTAGGGTTG 60.378 63.158 0.00 0.00 0.00 3.77
1473 1551 1.496429 CTGCTAGGGTTGGATGGGAAT 59.504 52.381 0.00 0.00 0.00 3.01
1474 1552 1.494721 TGCTAGGGTTGGATGGGAATC 59.505 52.381 0.00 0.00 0.00 2.52
1528 1606 4.094442 CCAAAAGGTAATAGACGGAACTGC 59.906 45.833 0.00 0.00 0.00 4.40
1561 1639 1.294780 CTGTGAGAGGCAGTGGACC 59.705 63.158 0.00 0.00 0.00 4.46
1590 1668 7.905265 TGATTCAAGAGATCTGGATATCCTTC 58.095 38.462 22.35 15.46 36.82 3.46
1600 1678 6.240549 TCTGGATATCCTTCTCCTGTTTTC 57.759 41.667 22.35 0.00 36.82 2.29
1604 1682 5.131142 GGATATCCTTCTCCTGTTTTCCTCA 59.869 44.000 14.97 0.00 0.00 3.86
1665 1743 0.036010 GCTGCTGTTAGGAGAAGCCA 60.036 55.000 1.31 0.00 38.57 4.75
1668 1746 3.462021 CTGCTGTTAGGAGAAGCCATAC 58.538 50.000 0.00 0.00 35.49 2.39
1744 1822 2.762327 GCAAACTGAACCATGATGGGAT 59.238 45.455 17.04 3.89 43.37 3.85
1749 1827 4.875389 ACTGAACCATGATGGGATGAAAT 58.125 39.130 17.04 0.00 43.37 2.17
1750 1828 4.891756 ACTGAACCATGATGGGATGAAATC 59.108 41.667 17.04 3.17 43.37 2.17
1763 1850 4.816385 GGGATGAAATCGTCTTAAGCATGA 59.184 41.667 0.00 0.00 46.86 3.07
1925 2090 4.952071 TTTGTTCATTTGCAGATCCCAA 57.048 36.364 0.00 0.00 0.00 4.12
1938 2103 1.217057 ATCCCAAGGGTGCTGATGGT 61.217 55.000 4.80 0.00 36.47 3.55
1952 2117 5.296035 GTGCTGATGGTAACCAGGTATTTAC 59.704 44.000 0.00 0.00 36.75 2.01
2623 2789 8.396272 TCGAAGGGTAAGTAACTGGTATATAC 57.604 38.462 4.14 4.14 0.00 1.47
2624 2790 8.220559 TCGAAGGGTAAGTAACTGGTATATACT 58.779 37.037 12.54 0.00 0.00 2.12
2625 2791 9.507329 CGAAGGGTAAGTAACTGGTATATACTA 57.493 37.037 12.54 5.81 30.03 1.82
2750 2916 3.979501 AGAGGGCAATGGATTTGGTAT 57.020 42.857 0.00 0.00 35.75 2.73
2808 2974 2.141535 GCTATTGAGCGATCGAAGGT 57.858 50.000 21.57 0.00 39.39 3.50
3548 3717 7.328737 GCTGTTTCTAACGATAATGGTCGATAT 59.671 37.037 6.96 0.00 44.06 1.63
3549 3718 8.515473 TGTTTCTAACGATAATGGTCGATATG 57.485 34.615 6.96 0.00 44.06 1.78
3679 3848 4.520179 TCCATGTTGAGAATGTGGATGAG 58.480 43.478 0.00 0.00 34.23 2.90
3898 4067 8.195165 TGGATAAGATACTTTTCCTCGATGAT 57.805 34.615 17.02 0.00 0.00 2.45
3967 4136 2.208132 ACGGAATGGTTAATGGTGCA 57.792 45.000 0.00 0.00 0.00 4.57
4048 4217 2.290641 ACACATTGCTCGGAACTTTGAC 59.709 45.455 0.00 0.00 0.00 3.18
4157 4326 3.355378 TGGCAAACCATGGTGAGATTAG 58.645 45.455 20.60 4.70 42.67 1.73
4305 4474 1.336887 ACGTTCTACAAGCTGACGCAT 60.337 47.619 0.00 0.00 39.10 4.73
4311 4480 2.110967 CAAGCTGACGCATCCCCTG 61.111 63.158 0.00 0.00 39.10 4.45
4392 4561 1.134075 CAATGCTGCTGTCGCTCAC 59.866 57.895 0.00 0.00 36.97 3.51
4470 4639 9.924650 CCATACTGGACAAGGTATATAAAGTAC 57.075 37.037 0.00 0.00 40.96 2.73
4617 4795 3.759618 AGTAGTATCGGCTGGAGCTATTC 59.240 47.826 0.00 0.00 41.70 1.75
4742 4920 2.181954 TTGGCCAACAAAATCATGCC 57.818 45.000 16.05 0.00 35.79 4.40
4900 5121 9.409312 TGTAAGAATTGCATTATCTTGTTGTTG 57.591 29.630 15.51 0.00 35.19 3.33
4901 5122 6.956299 AGAATTGCATTATCTTGTTGTTGC 57.044 33.333 0.00 0.00 0.00 4.17
4902 5123 6.694447 AGAATTGCATTATCTTGTTGTTGCT 58.306 32.000 0.00 0.00 0.00 3.91
4912 5135 6.655078 ATCTTGTTGTTGCTTGGAGTATTT 57.345 33.333 0.00 0.00 0.00 1.40
4913 5136 7.759489 ATCTTGTTGTTGCTTGGAGTATTTA 57.241 32.000 0.00 0.00 0.00 1.40
4925 5148 6.569801 GCTTGGAGTATTTAAGTGGTGGTTTC 60.570 42.308 0.00 0.00 0.00 2.78
4941 5164 5.011023 GGTGGTTTCCAGAATCAAACTCATT 59.989 40.000 0.00 0.00 32.34 2.57
5035 5260 3.382865 TGCCTTGATTGTAGTTTGTGCAA 59.617 39.130 0.00 0.00 34.98 4.08
5055 5281 1.447489 CCTCAGTCAGAGCTTGCCG 60.447 63.158 0.00 0.00 43.31 5.69
5124 5350 2.662791 CGTTCTTGCATTGTCTGGTTCG 60.663 50.000 0.00 0.00 0.00 3.95
5137 5363 3.764049 GTTCGTGTGGCGCTCGTC 61.764 66.667 20.07 11.95 41.07 4.20
5138 5364 3.973516 TTCGTGTGGCGCTCGTCT 61.974 61.111 20.07 0.00 41.07 4.18
5139 5365 3.493830 TTCGTGTGGCGCTCGTCTT 62.494 57.895 20.07 0.00 41.07 3.01
5140 5366 2.126618 CGTGTGGCGCTCGTCTTA 60.127 61.111 7.64 0.00 0.00 2.10
5141 5367 2.434134 CGTGTGGCGCTCGTCTTAC 61.434 63.158 7.64 0.00 0.00 2.34
5142 5368 1.080705 GTGTGGCGCTCGTCTTACT 60.081 57.895 7.64 0.00 0.00 2.24
5143 5369 1.071567 GTGTGGCGCTCGTCTTACTC 61.072 60.000 7.64 0.00 0.00 2.59
5144 5370 1.868251 GTGGCGCTCGTCTTACTCG 60.868 63.158 7.64 0.00 0.00 4.18
5150 5376 2.046023 TCGTCTTACTCGGGCCGA 60.046 61.111 29.14 29.14 0.00 5.54
5186 5412 3.723348 GACCGCGCTGAACAACCC 61.723 66.667 5.61 0.00 0.00 4.11
5307 5575 0.171007 CATTCCTCAACGGCGCAATT 59.829 50.000 10.83 0.00 0.00 2.32
5450 5718 1.445410 CGCCGTCTCCGATGAACAA 60.445 57.895 0.00 0.00 35.63 2.83
5464 5732 0.598158 GAACAACGCGTCCCAGTACA 60.598 55.000 14.44 0.00 0.00 2.90
5465 5733 0.179078 AACAACGCGTCCCAGTACAA 60.179 50.000 14.44 0.00 0.00 2.41
5467 5735 0.319211 CAACGCGTCCCAGTACAAGA 60.319 55.000 14.44 0.00 0.00 3.02
5469 5737 0.319297 ACGCGTCCCAGTACAAGAAC 60.319 55.000 5.58 0.00 0.00 3.01
5470 5738 0.319211 CGCGTCCCAGTACAAGAACA 60.319 55.000 0.00 0.00 0.00 3.18
5471 5739 1.429463 GCGTCCCAGTACAAGAACAG 58.571 55.000 0.00 0.00 0.00 3.16
5476 5744 1.626654 CCAGTACAAGAACAGCCGCG 61.627 60.000 0.00 0.00 0.00 6.46
5477 5745 1.374252 AGTACAAGAACAGCCGCGG 60.374 57.895 24.05 24.05 0.00 6.46
5478 5746 2.740826 TACAAGAACAGCCGCGGC 60.741 61.111 42.34 42.34 42.33 6.53
5495 5763 1.718757 GGCATGAAGGTCATCACGCC 61.719 60.000 0.00 0.00 36.66 5.68
5500 5768 2.185310 GAAGGTCATCACGCCCACCT 62.185 60.000 0.00 0.00 41.27 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.936498 CGTAAAGATGGCCATCGAAAGT 59.064 45.455 34.48 22.29 42.48 2.66
10 11 1.208535 ACCGTAAAGATGGCCATCGAA 59.791 47.619 34.48 22.94 42.48 3.71
28 29 4.639334 GATAAGGAAATTCGGGTAGGACC 58.361 47.826 0.00 0.00 37.60 4.46
40 41 9.886132 AGTACTTAAACATGTCGATAAGGAAAT 57.114 29.630 20.86 11.15 31.25 2.17
51 52 4.921515 TCTGCGTGAGTACTTAAACATGTC 59.078 41.667 0.00 0.00 0.00 3.06
64 65 1.682684 CCTAGGGGTCTGCGTGAGT 60.683 63.158 0.00 0.00 0.00 3.41
70 71 1.690985 AGGCTTCCTAGGGGTCTGC 60.691 63.158 9.46 6.40 28.47 4.26
87 88 3.190118 GTCTTTTCCATGTCCTGCTTCAG 59.810 47.826 0.00 0.00 0.00 3.02
138 139 4.569719 TCCACTATGGGGAAAAAGTCTC 57.430 45.455 0.00 0.00 38.32 3.36
169 174 4.160252 GGAGCAAAATTCAAGGCTGGATTA 59.840 41.667 0.00 0.00 36.59 1.75
170 175 3.055602 GGAGCAAAATTCAAGGCTGGATT 60.056 43.478 0.00 0.00 36.59 3.01
231 237 1.138859 TGTCATCGGATGTGGGATCAC 59.861 52.381 17.01 7.23 43.87 3.06
232 238 1.494960 TGTCATCGGATGTGGGATCA 58.505 50.000 17.01 6.34 0.00 2.92
249 255 8.472413 CACTGAATGAGAAATATTTGGGAATGT 58.528 33.333 5.17 0.00 0.00 2.71
294 300 5.241506 ATTCGAGCTGAAATCAAAGGTTTGA 59.758 36.000 7.58 7.58 43.69 2.69
330 336 6.364701 TCTTTCATCTTCTTCAACAAAGGGA 58.635 36.000 0.00 0.00 35.54 4.20
338 344 6.653526 TGGCAAATCTTTCATCTTCTTCAA 57.346 33.333 0.00 0.00 0.00 2.69
367 373 2.972021 CCCTTGGGTTGGTCTCATTTTT 59.028 45.455 0.00 0.00 0.00 1.94
368 374 2.608623 CCCTTGGGTTGGTCTCATTTT 58.391 47.619 0.00 0.00 0.00 1.82
369 375 1.827245 GCCCTTGGGTTGGTCTCATTT 60.827 52.381 7.61 0.00 0.00 2.32
370 376 0.251787 GCCCTTGGGTTGGTCTCATT 60.252 55.000 7.61 0.00 0.00 2.57
371 377 1.384191 GCCCTTGGGTTGGTCTCAT 59.616 57.895 7.61 0.00 0.00 2.90
372 378 2.840753 GGCCCTTGGGTTGGTCTCA 61.841 63.158 7.61 0.00 0.00 3.27
373 379 2.035783 GGCCCTTGGGTTGGTCTC 59.964 66.667 7.61 0.00 0.00 3.36
374 380 2.371897 CTTGGCCCTTGGGTTGGTCT 62.372 60.000 0.00 0.00 0.00 3.85
375 381 1.908299 CTTGGCCCTTGGGTTGGTC 60.908 63.158 0.00 0.00 0.00 4.02
376 382 2.201210 CTTGGCCCTTGGGTTGGT 59.799 61.111 0.00 0.00 0.00 3.67
377 383 3.313524 GCTTGGCCCTTGGGTTGG 61.314 66.667 0.00 0.00 0.00 3.77
378 384 3.313524 GGCTTGGCCCTTGGGTTG 61.314 66.667 0.00 0.00 44.06 3.77
405 411 5.063060 GCTCGCGGAGTTTCTCTTATAAAAA 59.937 40.000 6.13 0.00 31.39 1.94
406 412 4.565564 GCTCGCGGAGTTTCTCTTATAAAA 59.434 41.667 6.13 0.00 31.39 1.52
407 413 4.110482 GCTCGCGGAGTTTCTCTTATAAA 58.890 43.478 6.13 0.00 31.39 1.40
408 414 3.703420 GCTCGCGGAGTTTCTCTTATAA 58.297 45.455 6.13 0.00 31.39 0.98
409 415 2.286831 CGCTCGCGGAGTTTCTCTTATA 60.287 50.000 6.13 0.00 35.56 0.98
410 416 1.534175 CGCTCGCGGAGTTTCTCTTAT 60.534 52.381 6.13 0.00 35.56 1.73
411 417 0.179171 CGCTCGCGGAGTTTCTCTTA 60.179 55.000 6.13 0.00 35.56 2.10
412 418 1.444553 CGCTCGCGGAGTTTCTCTT 60.445 57.895 6.13 0.00 35.56 2.85
413 419 2.143594 AACGCTCGCGGAGTTTCTCT 62.144 55.000 16.18 0.00 44.69 3.10
414 420 1.733399 AACGCTCGCGGAGTTTCTC 60.733 57.895 16.18 0.00 44.69 2.87
415 421 2.022129 CAACGCTCGCGGAGTTTCT 61.022 57.895 16.18 0.00 44.69 2.52
416 422 2.470286 CAACGCTCGCGGAGTTTC 59.530 61.111 16.18 0.00 44.69 2.78
417 423 3.712881 GCAACGCTCGCGGAGTTT 61.713 61.111 16.18 0.00 44.69 2.66
424 430 3.832171 CTGACTCGCAACGCTCGC 61.832 66.667 0.00 0.00 0.00 5.03
425 431 2.126850 TCTGACTCGCAACGCTCG 60.127 61.111 0.00 0.00 0.00 5.03
426 432 2.440569 GCTCTGACTCGCAACGCTC 61.441 63.158 0.00 0.00 0.00 5.03
427 433 2.431601 GCTCTGACTCGCAACGCT 60.432 61.111 0.00 0.00 0.00 5.07
428 434 3.482783 GGCTCTGACTCGCAACGC 61.483 66.667 0.00 0.00 0.00 4.84
429 435 3.175240 CGGCTCTGACTCGCAACG 61.175 66.667 0.00 0.00 0.00 4.10
430 436 1.803519 CTCGGCTCTGACTCGCAAC 60.804 63.158 0.00 0.00 0.00 4.17
431 437 2.568612 CTCGGCTCTGACTCGCAA 59.431 61.111 0.00 0.00 0.00 4.85
432 438 3.443925 CCTCGGCTCTGACTCGCA 61.444 66.667 0.00 0.00 0.00 5.10
433 439 4.863925 GCCTCGGCTCTGACTCGC 62.864 72.222 0.00 0.00 38.26 5.03
460 466 4.410400 AGTTACAGCCAGCCCGCC 62.410 66.667 0.00 0.00 0.00 6.13
461 467 2.820037 GAGTTACAGCCAGCCCGC 60.820 66.667 0.00 0.00 0.00 6.13
462 468 2.125106 GGAGTTACAGCCAGCCCG 60.125 66.667 0.00 0.00 0.00 6.13
463 469 1.078143 CTGGAGTTACAGCCAGCCC 60.078 63.158 10.46 0.00 44.53 5.19
464 470 4.625800 CTGGAGTTACAGCCAGCC 57.374 61.111 10.46 0.00 44.53 4.85
470 476 1.532868 GTTGTGCTGCTGGAGTTACAG 59.467 52.381 0.00 0.00 41.41 2.74
471 477 1.593196 GTTGTGCTGCTGGAGTTACA 58.407 50.000 0.00 1.45 0.00 2.41
472 478 0.875059 GGTTGTGCTGCTGGAGTTAC 59.125 55.000 0.00 0.00 0.00 2.50
473 479 0.472044 TGGTTGTGCTGCTGGAGTTA 59.528 50.000 0.00 0.00 0.00 2.24
474 480 0.395586 TTGGTTGTGCTGCTGGAGTT 60.396 50.000 0.00 0.00 0.00 3.01
475 481 1.103398 GTTGGTTGTGCTGCTGGAGT 61.103 55.000 0.00 0.00 0.00 3.85
476 482 1.656441 GTTGGTTGTGCTGCTGGAG 59.344 57.895 0.00 0.00 0.00 3.86
477 483 2.186160 CGTTGGTTGTGCTGCTGGA 61.186 57.895 0.00 0.00 0.00 3.86
478 484 2.332514 CGTTGGTTGTGCTGCTGG 59.667 61.111 0.00 0.00 0.00 4.85
479 485 2.332514 CCGTTGGTTGTGCTGCTG 59.667 61.111 0.00 0.00 0.00 4.41
480 486 2.906897 CCCGTTGGTTGTGCTGCT 60.907 61.111 0.00 0.00 0.00 4.24
481 487 3.216292 ACCCGTTGGTTGTGCTGC 61.216 61.111 0.00 0.00 44.75 5.25
501 507 1.838073 AAATCTTGAGGACGGGGCGT 61.838 55.000 0.00 0.00 45.10 5.68
502 508 0.676782 AAAATCTTGAGGACGGGGCG 60.677 55.000 0.00 0.00 0.00 6.13
503 509 1.095600 GAAAATCTTGAGGACGGGGC 58.904 55.000 0.00 0.00 0.00 5.80
504 510 1.004277 TGGAAAATCTTGAGGACGGGG 59.996 52.381 0.00 0.00 0.00 5.73
505 511 2.489938 TGGAAAATCTTGAGGACGGG 57.510 50.000 0.00 0.00 0.00 5.28
506 512 4.770795 ACTATGGAAAATCTTGAGGACGG 58.229 43.478 0.00 0.00 0.00 4.79
507 513 5.874810 TCAACTATGGAAAATCTTGAGGACG 59.125 40.000 0.00 0.00 0.00 4.79
508 514 7.872113 ATCAACTATGGAAAATCTTGAGGAC 57.128 36.000 0.00 0.00 0.00 3.85
509 515 7.280876 CGAATCAACTATGGAAAATCTTGAGGA 59.719 37.037 0.00 0.00 0.00 3.71
510 516 7.066284 ACGAATCAACTATGGAAAATCTTGAGG 59.934 37.037 0.00 0.00 0.00 3.86
511 517 7.978982 ACGAATCAACTATGGAAAATCTTGAG 58.021 34.615 0.00 0.00 0.00 3.02
512 518 7.921786 ACGAATCAACTATGGAAAATCTTGA 57.078 32.000 0.00 0.00 0.00 3.02
513 519 7.008628 GCAACGAATCAACTATGGAAAATCTTG 59.991 37.037 0.00 0.00 0.00 3.02
521 527 2.639065 GGGCAACGAATCAACTATGGA 58.361 47.619 0.00 0.00 37.60 3.41
563 569 3.340814 AATGAGGTCAACTAGGTGCTG 57.659 47.619 1.76 0.00 0.00 4.41
571 641 1.133513 TGGGTGCAAATGAGGTCAACT 60.134 47.619 0.00 0.00 0.00 3.16
702 774 1.912731 TGCCTTACTGATGGGCTTACA 59.087 47.619 0.00 0.00 45.45 2.41
706 778 1.207488 TGGTGCCTTACTGATGGGCT 61.207 55.000 0.00 0.00 45.45 5.19
747 819 0.667487 CACGCGATCGAAGCCCATAT 60.667 55.000 21.57 0.00 39.41 1.78
748 820 1.299850 CACGCGATCGAAGCCCATA 60.300 57.895 21.57 0.00 39.41 2.74
749 821 2.586079 CACGCGATCGAAGCCCAT 60.586 61.111 21.57 0.00 39.41 4.00
1177 1253 4.475444 TAGGGAGTGAGGCGGGGG 62.475 72.222 0.00 0.00 0.00 5.40
1193 1270 6.293698 GGGTTTCTCTAACAAAAGTGTCCTA 58.706 40.000 0.00 0.00 36.80 2.94
1197 1274 3.881089 CGGGGTTTCTCTAACAAAAGTGT 59.119 43.478 0.00 0.00 40.75 3.55
1217 1294 0.037303 ATCCATGGCATAGGAAGCGG 59.963 55.000 18.29 7.01 37.48 5.52
1218 1295 1.901591 AATCCATGGCATAGGAAGCG 58.098 50.000 18.29 0.00 37.48 4.68
1219 1296 2.227388 CGAAATCCATGGCATAGGAAGC 59.773 50.000 18.29 11.57 37.48 3.86
1270 1347 2.660064 AACCTAGGTGCAGCGGGAG 61.660 63.158 28.31 18.81 0.00 4.30
1276 1353 2.103263 GGATAGACCAACCTAGGTGCAG 59.897 54.545 17.14 9.86 43.38 4.41
1280 1357 1.411041 GCGGATAGACCAACCTAGGT 58.589 55.000 9.21 9.21 46.82 3.08
1281 1358 0.314302 CGCGGATAGACCAACCTAGG 59.686 60.000 7.41 7.41 38.90 3.02
1303 1380 3.880846 GCAGCCCAAGCGAATCCG 61.881 66.667 0.00 0.00 46.67 4.18
1312 1389 1.865788 GCATCAAACTCGCAGCCCAA 61.866 55.000 0.00 0.00 0.00 4.12
1396 1473 5.619981 GCTGAATAACAATCCTGAACCACAC 60.620 44.000 0.00 0.00 0.00 3.82
1397 1474 4.458989 GCTGAATAACAATCCTGAACCACA 59.541 41.667 0.00 0.00 0.00 4.17
1425 1502 1.588082 GCTGAGGCCAAACCACATG 59.412 57.895 5.01 0.00 43.14 3.21
1446 1523 1.377725 CAACCCTAGCAGTGCCCAG 60.378 63.158 12.58 9.45 0.00 4.45
1455 1532 1.543429 CGATTCCCATCCAACCCTAGC 60.543 57.143 0.00 0.00 0.00 3.42
1464 1542 0.106708 TGCAGCTACGATTCCCATCC 59.893 55.000 0.00 0.00 0.00 3.51
1473 1551 2.221676 CAACACGTTGCAGCTACGA 58.778 52.632 31.64 0.00 41.33 3.43
1474 1552 4.798152 CAACACGTTGCAGCTACG 57.202 55.556 24.96 24.96 44.20 3.51
1528 1606 2.600420 CTCACAGGTTCGTGATCATTCG 59.400 50.000 0.00 0.00 44.61 3.34
1561 1639 8.036575 GGATATCCAGATCTCTTGAATCAGAAG 58.963 40.741 17.34 0.00 35.64 2.85
1590 1668 2.880890 CACCAAGTGAGGAAAACAGGAG 59.119 50.000 0.00 0.00 35.23 3.69
1600 1678 0.468029 AAACCTGGCACCAAGTGAGG 60.468 55.000 0.00 0.08 35.23 3.86
1604 1682 2.890945 GACATAAAACCTGGCACCAAGT 59.109 45.455 0.00 0.00 0.00 3.16
1665 1743 3.588842 ACTATGCCATGGGTATGCAGTAT 59.411 43.478 15.13 0.00 32.79 2.12
1668 1746 2.574006 ACTATGCCATGGGTATGCAG 57.426 50.000 15.13 0.00 32.79 4.41
1712 1790 3.998341 GGTTCAGTTTGCACGGATAAGTA 59.002 43.478 0.00 0.00 0.00 2.24
1720 1798 2.587956 CATCATGGTTCAGTTTGCACG 58.412 47.619 0.00 0.00 0.00 5.34
1763 1850 6.560253 ATGATAAAGCAAAAGACAACTCGT 57.440 33.333 0.00 0.00 0.00 4.18
1833 1998 9.260166 CAAACATTACAACAAAACATTGTTCAC 57.740 29.630 1.83 0.00 42.69 3.18
1834 1999 9.208022 TCAAACATTACAACAAAACATTGTTCA 57.792 25.926 1.83 0.00 42.69 3.18
1911 2076 1.856629 CACCCTTGGGATCTGCAAAT 58.143 50.000 13.39 0.00 0.00 2.32
1925 2090 0.620556 CTGGTTACCATCAGCACCCT 59.379 55.000 3.88 0.00 30.82 4.34
1938 2103 9.689501 CTTTTAGAATGGGTAAATACCTGGTTA 57.310 33.333 3.84 0.00 45.72 2.85
1952 2117 6.857437 AATTTGACTCCCTTTTAGAATGGG 57.143 37.500 5.51 5.51 45.03 4.00
1996 2161 4.027295 GCTTCAATGTGAGACGAATCGTAG 60.027 45.833 8.77 0.00 41.37 3.51
2750 2916 2.408271 AGCGCTTCATCATCTTTCCA 57.592 45.000 2.64 0.00 0.00 3.53
2808 2974 3.307691 CCCAAGGACAGCAGAATCTACAA 60.308 47.826 0.00 0.00 0.00 2.41
3679 3848 5.668558 ACGATGAGTTCAACCACTTAAAC 57.331 39.130 0.00 0.00 0.00 2.01
3898 4067 6.486320 TCAAATCTTTCTGCACAACTATGTCA 59.514 34.615 0.00 0.00 37.82 3.58
3967 4136 3.577919 ACTCTCTCCACAGGTAAACACT 58.422 45.455 0.00 0.00 0.00 3.55
4048 4217 1.185315 CCCAACCACAAGCATTAGGG 58.815 55.000 0.00 0.00 0.00 3.53
4157 4326 7.870954 TGATATGAAATCCTACGGTGATGTTAC 59.129 37.037 0.00 0.00 0.00 2.50
4305 4474 0.472471 GCCACGATTTATCCAGGGGA 59.528 55.000 0.00 0.00 35.55 4.81
4311 4480 2.851195 AGGACATGCCACGATTTATCC 58.149 47.619 8.58 0.00 40.02 2.59
4392 4561 3.355378 TGGCTTCATGTTCCCATTGTAG 58.645 45.455 0.00 0.00 0.00 2.74
4470 4639 1.520787 GCGGATGTAAGGGTGGTCG 60.521 63.158 0.00 0.00 0.00 4.79
4617 4795 0.680618 TTTCCAGGGTGCAAGCAATG 59.319 50.000 0.00 0.00 34.77 2.82
4742 4920 1.199852 GCACGCGTTCAACAGGTTTG 61.200 55.000 10.22 0.00 0.00 2.93
4863 5084 6.618287 TGCAATTCTTACAATTATCCCTCG 57.382 37.500 0.00 0.00 0.00 4.63
4894 5115 6.149633 CCACTTAAATACTCCAAGCAACAAC 58.850 40.000 0.00 0.00 0.00 3.32
4895 5116 5.830991 ACCACTTAAATACTCCAAGCAACAA 59.169 36.000 0.00 0.00 0.00 2.83
4896 5117 5.240623 CACCACTTAAATACTCCAAGCAACA 59.759 40.000 0.00 0.00 0.00 3.33
4897 5118 5.335661 CCACCACTTAAATACTCCAAGCAAC 60.336 44.000 0.00 0.00 0.00 4.17
4898 5119 4.764823 CCACCACTTAAATACTCCAAGCAA 59.235 41.667 0.00 0.00 0.00 3.91
4900 5121 4.332828 ACCACCACTTAAATACTCCAAGC 58.667 43.478 0.00 0.00 0.00 4.01
4901 5122 6.072119 GGAAACCACCACTTAAATACTCCAAG 60.072 42.308 0.00 0.00 0.00 3.61
4902 5123 5.771165 GGAAACCACCACTTAAATACTCCAA 59.229 40.000 0.00 0.00 0.00 3.53
4912 5135 4.715534 TGATTCTGGAAACCACCACTTA 57.284 40.909 0.00 0.00 35.91 2.24
4913 5136 3.593442 TGATTCTGGAAACCACCACTT 57.407 42.857 0.00 0.00 35.91 3.16
4941 5164 9.392506 TCATTATCCCTTGATCCATCTTAACTA 57.607 33.333 0.00 0.00 32.18 2.24
4945 5168 7.631510 TGTCATTATCCCTTGATCCATCTTA 57.368 36.000 0.00 0.00 32.18 2.10
4988 5211 8.686334 CAGAAACCAGTGGCTTAATTATTGTAT 58.314 33.333 9.78 0.00 0.00 2.29
5035 5260 1.296068 GCAAGCTCTGACTGAGGCT 59.704 57.895 10.93 6.10 42.87 4.58
5055 5281 1.946283 GCTCCCTTGGCACACTACTTC 60.946 57.143 0.00 0.00 39.29 3.01
5124 5350 1.071567 GAGTAAGACGAGCGCCACAC 61.072 60.000 2.29 0.00 0.00 3.82
5136 5362 3.136123 CCGTCGGCCCGAGTAAGA 61.136 66.667 5.82 0.00 36.23 2.10
5137 5363 4.867599 GCCGTCGGCCCGAGTAAG 62.868 72.222 26.23 0.00 44.06 2.34
5150 5376 4.379243 CGTTCAGCCAGGAGCCGT 62.379 66.667 0.00 0.00 45.47 5.68
5176 5402 1.003718 GGACTCCCGGGTTGTTCAG 60.004 63.158 22.86 12.11 0.00 3.02
5186 5412 3.374402 ACGCTGACAGGACTCCCG 61.374 66.667 4.26 0.43 37.58 5.14
5190 5416 2.341543 CAGCACGCTGACAGGACT 59.658 61.111 13.87 0.00 46.30 3.85
5307 5575 2.267642 GGCATGTACGCTCACCCA 59.732 61.111 0.00 0.00 0.00 4.51
5450 5718 0.319297 GTTCTTGTACTGGGACGCGT 60.319 55.000 13.85 13.85 0.00 6.01
5464 5732 3.434319 CATGCCGCGGCTGTTCTT 61.434 61.111 45.79 23.04 42.51 2.52
5465 5733 3.899981 TTCATGCCGCGGCTGTTCT 62.900 57.895 45.79 24.61 42.51 3.01
5467 5735 3.434319 CTTCATGCCGCGGCTGTT 61.434 61.111 45.79 29.68 42.51 3.16
5478 5746 2.397751 GGGCGTGATGACCTTCATG 58.602 57.895 0.00 0.00 45.46 3.07
5479 5747 4.963878 GGGCGTGATGACCTTCAT 57.036 55.556 0.00 0.00 45.46 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.