Multiple sequence alignment - TraesCS5A01G319700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G319700 chr5A 100.000 3273 0 0 1 3273 532739691 532742963 0.000000e+00 6045
1 TraesCS5A01G319700 chr5A 87.576 1312 147 14 1000 2301 512060388 512061693 0.000000e+00 1506
2 TraesCS5A01G319700 chr5A 96.799 781 25 0 1 781 531239871 531240651 0.000000e+00 1304
3 TraesCS5A01G319700 chr5A 83.000 200 28 6 585 781 560598920 560599116 3.360000e-40 176
4 TraesCS5A01G319700 chr5D 95.756 1555 50 11 804 2355 417827870 417829411 0.000000e+00 2492
5 TraesCS5A01G319700 chr5D 88.070 1316 133 19 1000 2301 406416281 406417586 0.000000e+00 1539
6 TraesCS5A01G319700 chr5D 93.186 543 33 3 2735 3273 483581772 483581230 0.000000e+00 795
7 TraesCS5A01G319700 chr5B 94.159 1575 67 4 804 2356 505276098 505277669 0.000000e+00 2375
8 TraesCS5A01G319700 chr5B 91.476 1572 108 15 804 2356 505379079 505380643 0.000000e+00 2137
9 TraesCS5A01G319700 chr5B 87.510 1313 147 14 1000 2301 487438493 487439799 0.000000e+00 1500
10 TraesCS5A01G319700 chr1A 87.510 1297 139 14 1000 2276 537346992 537345699 0.000000e+00 1476
11 TraesCS5A01G319700 chr6D 86.960 1342 135 26 994 2301 36253498 36254833 0.000000e+00 1472
12 TraesCS5A01G319700 chr6D 91.921 557 42 3 2720 3273 390781545 390782101 0.000000e+00 776
13 TraesCS5A01G319700 chr6B 86.577 1341 142 21 994 2301 75942372 75943707 0.000000e+00 1445
14 TraesCS5A01G319700 chr6A 84.942 1388 166 23 950 2301 40298758 40300138 0.000000e+00 1365
15 TraesCS5A01G319700 chr7D 87.697 1016 118 6 972 1984 509631743 509630732 0.000000e+00 1177
16 TraesCS5A01G319700 chr7D 93.482 537 33 1 2739 3273 568365994 568365458 0.000000e+00 797
17 TraesCS5A01G319700 chr7D 91.400 500 31 4 1 500 599739844 599739357 0.000000e+00 675
18 TraesCS5A01G319700 chr7D 92.749 331 22 2 1 330 31884392 31884721 8.220000e-131 477
19 TraesCS5A01G319700 chr7B 87.122 1025 125 7 963 1984 538053070 538052050 0.000000e+00 1155
20 TraesCS5A01G319700 chr3D 91.421 781 54 4 1 781 536229998 536230765 0.000000e+00 1059
21 TraesCS5A01G319700 chr3D 94.650 243 13 0 335 577 565411593 565411351 8.570000e-101 377
22 TraesCS5A01G319700 chr3D 94.167 240 14 0 335 574 121322273 121322512 1.860000e-97 366
23 TraesCS5A01G319700 chr3D 93.636 220 12 1 562 781 121328773 121328990 8.760000e-86 327
24 TraesCS5A01G319700 chr3D 96.571 175 6 0 607 781 565411376 565411202 1.150000e-74 291
25 TraesCS5A01G319700 chr1B 90.253 790 65 2 1 790 35989141 35988364 0.000000e+00 1022
26 TraesCS5A01G319700 chr1B 88.860 781 72 8 1 779 26466051 26465284 0.000000e+00 946
27 TraesCS5A01G319700 chrUn 90.353 736 46 9 54 789 103243000 103243710 0.000000e+00 942
28 TraesCS5A01G319700 chr3A 94.216 536 30 1 2739 3273 562092653 562092118 0.000000e+00 817
29 TraesCS5A01G319700 chr2A 93.785 531 28 4 2735 3262 136642332 136642860 0.000000e+00 793
30 TraesCS5A01G319700 chr4D 93.309 538 32 3 2739 3273 40798949 40799485 0.000000e+00 791
31 TraesCS5A01G319700 chr1D 93.148 540 32 2 2739 3273 458720946 458720407 0.000000e+00 787
32 TraesCS5A01G319700 chr2D 92.804 542 35 3 2735 3273 574657601 574658141 0.000000e+00 782
33 TraesCS5A01G319700 chr2D 92.804 542 34 4 2736 3273 629577570 629577030 0.000000e+00 780
34 TraesCS5A01G319700 chr4A 92.244 361 28 0 425 785 735504832 735505192 2.250000e-141 512


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G319700 chr5A 532739691 532742963 3272 False 6045 6045 100.000 1 3273 1 chr5A.!!$F3 3272
1 TraesCS5A01G319700 chr5A 512060388 512061693 1305 False 1506 1506 87.576 1000 2301 1 chr5A.!!$F1 1301
2 TraesCS5A01G319700 chr5A 531239871 531240651 780 False 1304 1304 96.799 1 781 1 chr5A.!!$F2 780
3 TraesCS5A01G319700 chr5D 417827870 417829411 1541 False 2492 2492 95.756 804 2355 1 chr5D.!!$F2 1551
4 TraesCS5A01G319700 chr5D 406416281 406417586 1305 False 1539 1539 88.070 1000 2301 1 chr5D.!!$F1 1301
5 TraesCS5A01G319700 chr5D 483581230 483581772 542 True 795 795 93.186 2735 3273 1 chr5D.!!$R1 538
6 TraesCS5A01G319700 chr5B 505276098 505277669 1571 False 2375 2375 94.159 804 2356 1 chr5B.!!$F2 1552
7 TraesCS5A01G319700 chr5B 505379079 505380643 1564 False 2137 2137 91.476 804 2356 1 chr5B.!!$F3 1552
8 TraesCS5A01G319700 chr5B 487438493 487439799 1306 False 1500 1500 87.510 1000 2301 1 chr5B.!!$F1 1301
9 TraesCS5A01G319700 chr1A 537345699 537346992 1293 True 1476 1476 87.510 1000 2276 1 chr1A.!!$R1 1276
10 TraesCS5A01G319700 chr6D 36253498 36254833 1335 False 1472 1472 86.960 994 2301 1 chr6D.!!$F1 1307
11 TraesCS5A01G319700 chr6D 390781545 390782101 556 False 776 776 91.921 2720 3273 1 chr6D.!!$F2 553
12 TraesCS5A01G319700 chr6B 75942372 75943707 1335 False 1445 1445 86.577 994 2301 1 chr6B.!!$F1 1307
13 TraesCS5A01G319700 chr6A 40298758 40300138 1380 False 1365 1365 84.942 950 2301 1 chr6A.!!$F1 1351
14 TraesCS5A01G319700 chr7D 509630732 509631743 1011 True 1177 1177 87.697 972 1984 1 chr7D.!!$R1 1012
15 TraesCS5A01G319700 chr7D 568365458 568365994 536 True 797 797 93.482 2739 3273 1 chr7D.!!$R2 534
16 TraesCS5A01G319700 chr7B 538052050 538053070 1020 True 1155 1155 87.122 963 1984 1 chr7B.!!$R1 1021
17 TraesCS5A01G319700 chr3D 536229998 536230765 767 False 1059 1059 91.421 1 781 1 chr3D.!!$F3 780
18 TraesCS5A01G319700 chr1B 35988364 35989141 777 True 1022 1022 90.253 1 790 1 chr1B.!!$R2 789
19 TraesCS5A01G319700 chr1B 26465284 26466051 767 True 946 946 88.860 1 779 1 chr1B.!!$R1 778
20 TraesCS5A01G319700 chrUn 103243000 103243710 710 False 942 942 90.353 54 789 1 chrUn.!!$F1 735
21 TraesCS5A01G319700 chr3A 562092118 562092653 535 True 817 817 94.216 2739 3273 1 chr3A.!!$R1 534
22 TraesCS5A01G319700 chr2A 136642332 136642860 528 False 793 793 93.785 2735 3262 1 chr2A.!!$F1 527
23 TraesCS5A01G319700 chr4D 40798949 40799485 536 False 791 791 93.309 2739 3273 1 chr4D.!!$F1 534
24 TraesCS5A01G319700 chr1D 458720407 458720946 539 True 787 787 93.148 2739 3273 1 chr1D.!!$R1 534
25 TraesCS5A01G319700 chr2D 574657601 574658141 540 False 782 782 92.804 2735 3273 1 chr2D.!!$F1 538
26 TraesCS5A01G319700 chr2D 629577030 629577570 540 True 780 780 92.804 2736 3273 1 chr2D.!!$R1 537

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
781 785 0.042448 GTGTCGTCACACCTTTTCGC 60.042 55.0 7.95 0.0 46.49 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2512 2581 0.247736 GGAGGTGTCATGAGCGACTT 59.752 55.0 0.0 0.0 36.82 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
237 238 1.313772 ACATGAGATCTCTCCGTCGG 58.686 55.000 22.95 4.39 42.20 4.79
242 243 2.203167 ATCTCTCCGTCGGCGCTA 60.203 61.111 2.51 0.00 36.67 4.26
333 334 4.367166 TCATACATACAGAACTCCCCCAA 58.633 43.478 0.00 0.00 0.00 4.12
376 377 3.133901 TGTCTGCTAGAAAGAACCACACA 59.866 43.478 0.00 0.00 0.00 3.72
393 394 2.123640 AGGCCGCTACTCTCTCCC 60.124 66.667 0.00 0.00 0.00 4.30
509 511 0.178921 TCTCCCTCTGCTGTCACCTT 60.179 55.000 0.00 0.00 0.00 3.50
524 526 4.141228 TGTCACCTTAATAAACACCACCCA 60.141 41.667 0.00 0.00 0.00 4.51
527 529 5.013547 CACCTTAATAAACACCACCCATGA 58.986 41.667 0.00 0.00 0.00 3.07
706 708 3.586892 GTCTGTACCTGAAAGCTACACC 58.413 50.000 0.00 0.00 0.00 4.16
781 785 0.042448 GTGTCGTCACACCTTTTCGC 60.042 55.000 7.95 0.00 46.49 4.70
785 789 1.610038 TCGTCACACCTTTTCGCTCTA 59.390 47.619 0.00 0.00 0.00 2.43
786 790 1.719780 CGTCACACCTTTTCGCTCTAC 59.280 52.381 0.00 0.00 0.00 2.59
789 793 3.558418 GTCACACCTTTTCGCTCTACAAA 59.442 43.478 0.00 0.00 0.00 2.83
790 794 4.213482 GTCACACCTTTTCGCTCTACAAAT 59.787 41.667 0.00 0.00 0.00 2.32
791 795 4.451096 TCACACCTTTTCGCTCTACAAATC 59.549 41.667 0.00 0.00 0.00 2.17
792 796 3.751698 ACACCTTTTCGCTCTACAAATCC 59.248 43.478 0.00 0.00 0.00 3.01
793 797 3.751175 CACCTTTTCGCTCTACAAATCCA 59.249 43.478 0.00 0.00 0.00 3.41
794 798 4.396166 CACCTTTTCGCTCTACAAATCCAT 59.604 41.667 0.00 0.00 0.00 3.41
795 799 4.396166 ACCTTTTCGCTCTACAAATCCATG 59.604 41.667 0.00 0.00 0.00 3.66
796 800 4.346129 CTTTTCGCTCTACAAATCCATGC 58.654 43.478 0.00 0.00 0.00 4.06
797 801 2.689553 TCGCTCTACAAATCCATGCA 57.310 45.000 0.00 0.00 0.00 3.96
798 802 2.554142 TCGCTCTACAAATCCATGCAG 58.446 47.619 0.00 0.00 0.00 4.41
799 803 2.168313 TCGCTCTACAAATCCATGCAGA 59.832 45.455 0.00 0.00 0.00 4.26
800 804 2.543012 CGCTCTACAAATCCATGCAGAG 59.457 50.000 0.00 1.09 41.71 3.35
802 806 3.538591 CTCTACAAATCCATGCAGAGCA 58.461 45.455 0.00 0.00 44.86 4.26
876 880 1.109920 CGATGGAGGTCGTCCCTGAT 61.110 60.000 9.08 0.00 46.51 2.90
885 889 3.148279 GTCCCTGATCCCGTCGCT 61.148 66.667 0.00 0.00 0.00 4.93
910 914 3.308014 GAGGCAGCCGAGCAGAAGT 62.308 63.158 5.55 0.00 35.83 3.01
989 1017 1.150135 TCAGAAGAAGACCTCCCCACT 59.850 52.381 0.00 0.00 0.00 4.00
996 1024 0.252103 AGACCTCCCCACTTAAGCGA 60.252 55.000 1.29 0.00 0.00 4.93
1093 1121 1.492319 CCGTTTCTTGTTCGACGCCA 61.492 55.000 0.00 0.00 34.41 5.69
1308 1336 0.376152 CGGACGAGCACTACACGTAT 59.624 55.000 0.00 0.00 45.93 3.06
1795 1823 1.198094 TTCAAGGCCCTCGATCCACA 61.198 55.000 0.00 0.00 0.00 4.17
1796 1824 1.450312 CAAGGCCCTCGATCCACAC 60.450 63.158 0.00 0.00 0.00 3.82
1818 1846 3.624777 CTGATCAAAGGCAATACCCTGT 58.375 45.455 0.00 0.00 40.58 4.00
2036 2101 0.029567 GGACTACGAGGTGATCTGCG 59.970 60.000 0.00 0.00 0.00 5.18
2266 2331 1.898574 CCAGAAGCTGGCCGTGTTT 60.899 57.895 0.00 0.00 45.13 2.83
2287 2356 3.072211 TGACTAGATCGACTGTCGTGTT 58.928 45.455 27.16 16.41 41.35 3.32
2307 2376 5.411053 GTGTTCTCATCAGCTTAGCTTCTTT 59.589 40.000 3.00 0.00 36.40 2.52
2335 2404 2.888594 TCGTATTGTGAACAGCTAGCC 58.111 47.619 12.13 0.00 0.00 3.93
2365 2434 1.752683 GGTGACGGAAGCTCTAGAGA 58.247 55.000 24.24 0.00 0.00 3.10
2366 2435 1.673920 GGTGACGGAAGCTCTAGAGAG 59.326 57.143 24.24 10.36 44.75 3.20
2367 2436 2.361789 GTGACGGAAGCTCTAGAGAGT 58.638 52.381 24.24 13.28 43.85 3.24
2368 2437 2.750712 GTGACGGAAGCTCTAGAGAGTT 59.249 50.000 24.24 14.98 43.85 3.01
2369 2438 2.750166 TGACGGAAGCTCTAGAGAGTTG 59.250 50.000 24.24 10.39 43.85 3.16
2370 2439 1.474879 ACGGAAGCTCTAGAGAGTTGC 59.525 52.381 24.24 17.90 43.85 4.17
2371 2440 1.474478 CGGAAGCTCTAGAGAGTTGCA 59.526 52.381 24.24 0.00 43.85 4.08
2372 2441 2.733858 CGGAAGCTCTAGAGAGTTGCAC 60.734 54.545 24.24 3.56 43.85 4.57
2373 2442 2.232452 GGAAGCTCTAGAGAGTTGCACA 59.768 50.000 24.24 0.00 43.85 4.57
2374 2443 3.306364 GGAAGCTCTAGAGAGTTGCACAA 60.306 47.826 24.24 0.00 43.85 3.33
2375 2444 3.591196 AGCTCTAGAGAGTTGCACAAG 57.409 47.619 24.24 0.00 43.85 3.16
2376 2445 2.896685 AGCTCTAGAGAGTTGCACAAGT 59.103 45.455 24.24 0.00 43.85 3.16
2377 2446 3.323403 AGCTCTAGAGAGTTGCACAAGTT 59.677 43.478 24.24 0.00 43.85 2.66
2378 2447 4.524714 AGCTCTAGAGAGTTGCACAAGTTA 59.475 41.667 24.24 0.00 43.85 2.24
2379 2448 5.186797 AGCTCTAGAGAGTTGCACAAGTTAT 59.813 40.000 24.24 0.00 43.85 1.89
2380 2449 5.872070 GCTCTAGAGAGTTGCACAAGTTATT 59.128 40.000 24.24 0.00 43.85 1.40
2381 2450 6.370166 GCTCTAGAGAGTTGCACAAGTTATTT 59.630 38.462 24.24 0.00 43.85 1.40
2382 2451 7.545965 GCTCTAGAGAGTTGCACAAGTTATTTA 59.454 37.037 24.24 0.00 43.85 1.40
2383 2452 9.424319 CTCTAGAGAGTTGCACAAGTTATTTAA 57.576 33.333 15.05 0.00 37.40 1.52
2384 2453 9.772973 TCTAGAGAGTTGCACAAGTTATTTAAA 57.227 29.630 0.00 0.00 0.00 1.52
2387 2456 9.120538 AGAGAGTTGCACAAGTTATTTAAAAGA 57.879 29.630 0.00 0.00 0.00 2.52
2388 2457 9.730420 GAGAGTTGCACAAGTTATTTAAAAGAA 57.270 29.630 0.00 0.00 0.00 2.52
2389 2458 9.736023 AGAGTTGCACAAGTTATTTAAAAGAAG 57.264 29.630 0.00 0.00 0.00 2.85
2390 2459 9.730420 GAGTTGCACAAGTTATTTAAAAGAAGA 57.270 29.630 0.00 0.00 0.00 2.87
2398 2467 9.922951 CAAGTTATTTAAAAGAAGAAATTCGCG 57.077 29.630 0.00 0.00 0.00 5.87
2399 2468 8.669394 AGTTATTTAAAAGAAGAAATTCGCGG 57.331 30.769 6.13 0.00 0.00 6.46
2400 2469 8.294577 AGTTATTTAAAAGAAGAAATTCGCGGT 58.705 29.630 6.13 0.00 0.00 5.68
2401 2470 8.908678 GTTATTTAAAAGAAGAAATTCGCGGTT 58.091 29.630 6.13 0.00 0.00 4.44
2402 2471 6.979701 TTTAAAAGAAGAAATTCGCGGTTC 57.020 33.333 6.13 8.14 0.00 3.62
2403 2472 4.561735 AAAAGAAGAAATTCGCGGTTCA 57.438 36.364 6.13 0.00 0.00 3.18
2404 2473 4.766404 AAAGAAGAAATTCGCGGTTCAT 57.234 36.364 6.13 0.57 0.00 2.57
2405 2474 5.873179 AAAGAAGAAATTCGCGGTTCATA 57.127 34.783 6.13 0.00 0.00 2.15
2406 2475 5.873179 AAGAAGAAATTCGCGGTTCATAA 57.127 34.783 6.13 0.00 0.00 1.90
2407 2476 6.436843 AAGAAGAAATTCGCGGTTCATAAT 57.563 33.333 6.13 0.00 0.00 1.28
2408 2477 6.436843 AGAAGAAATTCGCGGTTCATAATT 57.563 33.333 6.13 0.10 0.00 1.40
2409 2478 6.852664 AGAAGAAATTCGCGGTTCATAATTT 58.147 32.000 6.13 9.98 34.98 1.82
2410 2479 6.967199 AGAAGAAATTCGCGGTTCATAATTTC 59.033 34.615 23.30 23.30 43.65 2.17
2411 2480 6.436843 AGAAATTCGCGGTTCATAATTTCT 57.563 33.333 25.81 25.81 46.29 2.52
2413 2482 7.506296 GAAATTCGCGGTTCATAATTTCTTT 57.494 32.000 23.39 4.01 41.67 2.52
2414 2483 6.869421 AATTCGCGGTTCATAATTTCTTTG 57.131 33.333 6.13 0.00 0.00 2.77
2415 2484 5.365403 TTCGCGGTTCATAATTTCTTTGT 57.635 34.783 6.13 0.00 0.00 2.83
2416 2485 6.483385 TTCGCGGTTCATAATTTCTTTGTA 57.517 33.333 6.13 0.00 0.00 2.41
2417 2486 6.671614 TCGCGGTTCATAATTTCTTTGTAT 57.328 33.333 6.13 0.00 0.00 2.29
2418 2487 7.079182 TCGCGGTTCATAATTTCTTTGTATT 57.921 32.000 6.13 0.00 0.00 1.89
2419 2488 7.531716 TCGCGGTTCATAATTTCTTTGTATTT 58.468 30.769 6.13 0.00 0.00 1.40
2420 2489 8.024285 TCGCGGTTCATAATTTCTTTGTATTTT 58.976 29.630 6.13 0.00 0.00 1.82
2421 2490 9.279904 CGCGGTTCATAATTTCTTTGTATTTTA 57.720 29.630 0.00 0.00 0.00 1.52
2447 2516 8.514330 TGTCTGTGATTTTATTTATACCACCC 57.486 34.615 0.00 0.00 0.00 4.61
2448 2517 8.110271 TGTCTGTGATTTTATTTATACCACCCA 58.890 33.333 0.00 0.00 0.00 4.51
2449 2518 8.403236 GTCTGTGATTTTATTTATACCACCCAC 58.597 37.037 0.00 0.00 0.00 4.61
2450 2519 8.110271 TCTGTGATTTTATTTATACCACCCACA 58.890 33.333 0.00 0.00 0.00 4.17
2451 2520 8.057536 TGTGATTTTATTTATACCACCCACAC 57.942 34.615 0.00 0.00 0.00 3.82
2452 2521 7.891183 TGTGATTTTATTTATACCACCCACACT 59.109 33.333 0.00 0.00 0.00 3.55
2453 2522 8.745590 GTGATTTTATTTATACCACCCACACTT 58.254 33.333 0.00 0.00 0.00 3.16
2454 2523 8.744652 TGATTTTATTTATACCACCCACACTTG 58.255 33.333 0.00 0.00 0.00 3.16
2455 2524 7.469537 TTTTATTTATACCACCCACACTTGG 57.530 36.000 0.00 0.00 43.50 3.61
2465 2534 2.638480 CCACACTTGGGACTTTCTGA 57.362 50.000 0.00 0.00 39.57 3.27
2466 2535 2.222027 CCACACTTGGGACTTTCTGAC 58.778 52.381 0.00 0.00 39.57 3.51
2467 2536 2.222027 CACACTTGGGACTTTCTGACC 58.778 52.381 0.00 0.00 0.00 4.02
2468 2537 2.127708 ACACTTGGGACTTTCTGACCT 58.872 47.619 0.00 0.00 0.00 3.85
2469 2538 3.071023 CACACTTGGGACTTTCTGACCTA 59.929 47.826 0.00 0.00 0.00 3.08
2470 2539 3.910627 ACACTTGGGACTTTCTGACCTAT 59.089 43.478 0.00 0.00 0.00 2.57
2471 2540 4.020128 ACACTTGGGACTTTCTGACCTATC 60.020 45.833 0.00 0.00 0.00 2.08
2472 2541 4.223923 CACTTGGGACTTTCTGACCTATCT 59.776 45.833 0.00 0.00 0.00 1.98
2473 2542 4.846940 ACTTGGGACTTTCTGACCTATCTT 59.153 41.667 0.00 0.00 0.00 2.40
2474 2543 6.023603 ACTTGGGACTTTCTGACCTATCTTA 58.976 40.000 0.00 0.00 0.00 2.10
2475 2544 5.934402 TGGGACTTTCTGACCTATCTTAC 57.066 43.478 0.00 0.00 0.00 2.34
2476 2545 5.590818 TGGGACTTTCTGACCTATCTTACT 58.409 41.667 0.00 0.00 0.00 2.24
2477 2546 6.738635 TGGGACTTTCTGACCTATCTTACTA 58.261 40.000 0.00 0.00 0.00 1.82
2478 2547 7.363031 TGGGACTTTCTGACCTATCTTACTAT 58.637 38.462 0.00 0.00 0.00 2.12
2479 2548 7.287927 TGGGACTTTCTGACCTATCTTACTATG 59.712 40.741 0.00 0.00 0.00 2.23
2480 2549 7.506261 GGGACTTTCTGACCTATCTTACTATGA 59.494 40.741 0.00 0.00 0.00 2.15
2481 2550 9.084533 GGACTTTCTGACCTATCTTACTATGAT 57.915 37.037 0.00 0.00 0.00 2.45
2482 2551 9.906660 GACTTTCTGACCTATCTTACTATGATG 57.093 37.037 0.00 0.00 0.00 3.07
2483 2552 9.427821 ACTTTCTGACCTATCTTACTATGATGT 57.572 33.333 0.00 0.00 0.00 3.06
2498 2567 9.537192 TTACTATGATGTAATCCTTAAACACCG 57.463 33.333 0.00 0.00 44.73 4.94
2499 2568 7.562135 ACTATGATGTAATCCTTAAACACCGT 58.438 34.615 0.00 0.00 44.73 4.83
2500 2569 6.920569 ATGATGTAATCCTTAAACACCGTC 57.079 37.500 0.00 0.00 44.73 4.79
2501 2570 5.180271 TGATGTAATCCTTAAACACCGTCC 58.820 41.667 0.00 0.00 44.73 4.79
2502 2571 4.895668 TGTAATCCTTAAACACCGTCCT 57.104 40.909 0.00 0.00 0.00 3.85
2503 2572 5.231702 TGTAATCCTTAAACACCGTCCTT 57.768 39.130 0.00 0.00 0.00 3.36
2504 2573 4.998672 TGTAATCCTTAAACACCGTCCTTG 59.001 41.667 0.00 0.00 0.00 3.61
2505 2574 3.782656 ATCCTTAAACACCGTCCTTGT 57.217 42.857 0.00 0.00 0.00 3.16
2506 2575 3.116079 TCCTTAAACACCGTCCTTGTC 57.884 47.619 0.00 0.00 0.00 3.18
2507 2576 1.796459 CCTTAAACACCGTCCTTGTCG 59.204 52.381 0.00 0.00 0.00 4.35
2515 2584 3.814577 CGTCCTTGTCGGATCAAGT 57.185 52.632 14.71 0.00 45.44 3.16
2516 2585 1.630148 CGTCCTTGTCGGATCAAGTC 58.370 55.000 14.71 9.24 45.44 3.01
2517 2586 1.630148 GTCCTTGTCGGATCAAGTCG 58.370 55.000 14.71 0.00 45.44 4.18
2518 2587 0.108804 TCCTTGTCGGATCAAGTCGC 60.109 55.000 14.71 0.00 42.01 5.19
2519 2588 0.108615 CCTTGTCGGATCAAGTCGCT 60.109 55.000 14.71 0.00 42.01 4.93
2520 2589 1.272781 CTTGTCGGATCAAGTCGCTC 58.727 55.000 0.00 0.00 39.66 5.03
2521 2590 0.601057 TTGTCGGATCAAGTCGCTCA 59.399 50.000 0.00 0.00 0.00 4.26
2522 2591 0.817654 TGTCGGATCAAGTCGCTCAT 59.182 50.000 0.00 0.00 0.00 2.90
2523 2592 1.203928 GTCGGATCAAGTCGCTCATG 58.796 55.000 0.00 0.00 0.00 3.07
2524 2593 1.102978 TCGGATCAAGTCGCTCATGA 58.897 50.000 0.00 0.00 0.00 3.07
2525 2594 1.202302 TCGGATCAAGTCGCTCATGAC 60.202 52.381 0.00 0.00 39.21 3.06
2526 2595 1.469767 CGGATCAAGTCGCTCATGACA 60.470 52.381 0.00 0.00 41.41 3.58
2527 2596 1.929836 GGATCAAGTCGCTCATGACAC 59.070 52.381 0.00 0.00 41.41 3.67
2528 2597 1.929836 GATCAAGTCGCTCATGACACC 59.070 52.381 0.00 0.00 41.41 4.16
2529 2598 0.969149 TCAAGTCGCTCATGACACCT 59.031 50.000 0.00 0.00 41.41 4.00
2530 2599 1.067565 TCAAGTCGCTCATGACACCTC 60.068 52.381 0.00 0.00 41.41 3.85
2531 2600 0.247736 AAGTCGCTCATGACACCTCC 59.752 55.000 0.00 0.00 41.41 4.30
2532 2601 0.900182 AGTCGCTCATGACACCTCCA 60.900 55.000 0.00 0.00 41.41 3.86
2533 2602 0.459237 GTCGCTCATGACACCTCCAG 60.459 60.000 0.00 0.00 38.75 3.86
2534 2603 1.812922 CGCTCATGACACCTCCAGC 60.813 63.158 0.00 0.00 0.00 4.85
2535 2604 1.601171 GCTCATGACACCTCCAGCT 59.399 57.895 0.00 0.00 0.00 4.24
2536 2605 0.743701 GCTCATGACACCTCCAGCTG 60.744 60.000 6.78 6.78 0.00 4.24
2537 2606 0.900421 CTCATGACACCTCCAGCTGA 59.100 55.000 17.39 0.00 0.00 4.26
2538 2607 0.610174 TCATGACACCTCCAGCTGAC 59.390 55.000 17.39 0.00 0.00 3.51
2539 2608 0.392193 CATGACACCTCCAGCTGACC 60.392 60.000 17.39 0.00 0.00 4.02
2540 2609 0.837691 ATGACACCTCCAGCTGACCA 60.838 55.000 17.39 2.36 0.00 4.02
2541 2610 1.294780 GACACCTCCAGCTGACCAG 59.705 63.158 17.39 7.80 0.00 4.00
2559 2628 4.409342 CTCTTCGGAGCCACATCG 57.591 61.111 0.00 0.00 35.11 3.84
2560 2629 1.227089 CTCTTCGGAGCCACATCGG 60.227 63.158 0.00 0.00 35.11 4.18
2579 2648 2.769376 GGCGACGAAATAACACACATG 58.231 47.619 0.00 0.00 0.00 3.21
2580 2649 2.158841 GGCGACGAAATAACACACATGT 59.841 45.455 0.00 0.00 42.46 3.21
2590 2659 2.092374 CACACATGTGCTGGGATCG 58.908 57.895 25.68 0.00 39.39 3.69
2591 2660 0.391528 CACACATGTGCTGGGATCGA 60.392 55.000 25.68 0.00 39.39 3.59
2592 2661 0.543277 ACACATGTGCTGGGATCGAT 59.457 50.000 25.68 0.00 30.50 3.59
2593 2662 1.065199 ACACATGTGCTGGGATCGATT 60.065 47.619 25.68 0.00 30.50 3.34
2594 2663 2.170397 ACACATGTGCTGGGATCGATTA 59.830 45.455 25.68 0.00 30.50 1.75
2595 2664 2.545526 CACATGTGCTGGGATCGATTAC 59.454 50.000 13.94 0.00 0.00 1.89
2596 2665 2.435805 ACATGTGCTGGGATCGATTACT 59.564 45.455 0.00 0.00 0.00 2.24
2597 2666 3.641436 ACATGTGCTGGGATCGATTACTA 59.359 43.478 0.00 0.00 0.00 1.82
2598 2667 4.100963 ACATGTGCTGGGATCGATTACTAA 59.899 41.667 0.00 0.00 0.00 2.24
2599 2668 4.322080 TGTGCTGGGATCGATTACTAAG 57.678 45.455 0.00 0.42 0.00 2.18
2600 2669 3.069586 TGTGCTGGGATCGATTACTAAGG 59.930 47.826 0.00 0.00 0.00 2.69
2601 2670 2.037251 TGCTGGGATCGATTACTAAGGC 59.963 50.000 0.00 0.00 0.00 4.35
2602 2671 2.037251 GCTGGGATCGATTACTAAGGCA 59.963 50.000 0.00 0.00 0.00 4.75
2603 2672 3.307059 GCTGGGATCGATTACTAAGGCAT 60.307 47.826 0.00 0.00 0.00 4.40
2604 2673 4.248859 CTGGGATCGATTACTAAGGCATG 58.751 47.826 0.00 0.00 0.00 4.06
2605 2674 3.646162 TGGGATCGATTACTAAGGCATGT 59.354 43.478 0.00 0.00 0.00 3.21
2606 2675 4.246458 GGGATCGATTACTAAGGCATGTC 58.754 47.826 0.00 0.00 0.00 3.06
2607 2676 4.262463 GGGATCGATTACTAAGGCATGTCA 60.262 45.833 0.00 0.00 0.00 3.58
2608 2677 5.297547 GGATCGATTACTAAGGCATGTCAA 58.702 41.667 0.00 0.00 0.00 3.18
2609 2678 5.934625 GGATCGATTACTAAGGCATGTCAAT 59.065 40.000 0.00 0.00 0.00 2.57
2610 2679 6.428159 GGATCGATTACTAAGGCATGTCAATT 59.572 38.462 0.00 0.00 0.00 2.32
2611 2680 6.603237 TCGATTACTAAGGCATGTCAATTG 57.397 37.500 0.00 0.00 0.00 2.32
2612 2681 5.007626 TCGATTACTAAGGCATGTCAATTGC 59.992 40.000 0.00 0.00 39.41 3.56
2613 2682 5.008019 CGATTACTAAGGCATGTCAATTGCT 59.992 40.000 0.00 0.00 40.03 3.91
2614 2683 6.458751 CGATTACTAAGGCATGTCAATTGCTT 60.459 38.462 0.00 0.00 40.03 3.91
2615 2684 6.588719 TTACTAAGGCATGTCAATTGCTTT 57.411 33.333 0.00 1.94 41.54 3.51
2616 2685 5.064441 ACTAAGGCATGTCAATTGCTTTC 57.936 39.130 0.00 0.00 39.68 2.62
2617 2686 4.768968 ACTAAGGCATGTCAATTGCTTTCT 59.231 37.500 0.00 0.00 39.68 2.52
2618 2687 3.863142 AGGCATGTCAATTGCTTTCTC 57.137 42.857 0.00 0.00 40.03 2.87
2619 2688 2.163010 AGGCATGTCAATTGCTTTCTCG 59.837 45.455 0.00 0.00 40.03 4.04
2620 2689 2.162208 GGCATGTCAATTGCTTTCTCGA 59.838 45.455 0.00 0.00 40.03 4.04
2621 2690 3.166657 GCATGTCAATTGCTTTCTCGAC 58.833 45.455 0.00 0.00 37.14 4.20
2622 2691 3.751621 CATGTCAATTGCTTTCTCGACC 58.248 45.455 0.00 0.00 0.00 4.79
2623 2692 2.844946 TGTCAATTGCTTTCTCGACCA 58.155 42.857 0.00 0.00 0.00 4.02
2624 2693 3.411446 TGTCAATTGCTTTCTCGACCAT 58.589 40.909 0.00 0.00 0.00 3.55
2625 2694 4.574892 TGTCAATTGCTTTCTCGACCATA 58.425 39.130 0.00 0.00 0.00 2.74
2626 2695 5.000591 TGTCAATTGCTTTCTCGACCATAA 58.999 37.500 0.00 0.00 0.00 1.90
2627 2696 5.122239 TGTCAATTGCTTTCTCGACCATAAG 59.878 40.000 0.00 0.00 0.00 1.73
2628 2697 5.122396 GTCAATTGCTTTCTCGACCATAAGT 59.878 40.000 0.00 0.00 0.00 2.24
2629 2698 5.122239 TCAATTGCTTTCTCGACCATAAGTG 59.878 40.000 0.00 0.00 0.00 3.16
2630 2699 3.678056 TGCTTTCTCGACCATAAGTGT 57.322 42.857 0.00 0.00 0.00 3.55
2631 2700 3.325870 TGCTTTCTCGACCATAAGTGTG 58.674 45.455 0.00 0.00 0.00 3.82
2632 2701 3.006430 TGCTTTCTCGACCATAAGTGTGA 59.994 43.478 0.00 0.00 0.00 3.58
2633 2702 3.614616 GCTTTCTCGACCATAAGTGTGAG 59.385 47.826 0.00 0.00 0.00 3.51
2634 2703 4.810790 CTTTCTCGACCATAAGTGTGAGT 58.189 43.478 0.00 0.00 32.09 3.41
2635 2704 5.621555 GCTTTCTCGACCATAAGTGTGAGTA 60.622 44.000 0.00 0.00 32.09 2.59
2636 2705 4.959596 TCTCGACCATAAGTGTGAGTAC 57.040 45.455 0.00 0.00 32.09 2.73
2637 2706 4.329392 TCTCGACCATAAGTGTGAGTACA 58.671 43.478 0.00 0.00 32.09 2.90
2638 2707 4.948004 TCTCGACCATAAGTGTGAGTACAT 59.052 41.667 0.00 0.00 39.39 2.29
2639 2708 5.417894 TCTCGACCATAAGTGTGAGTACATT 59.582 40.000 0.00 0.00 39.39 2.71
2640 2709 5.407502 TCGACCATAAGTGTGAGTACATTG 58.592 41.667 0.00 0.00 39.39 2.82
2641 2710 5.047590 TCGACCATAAGTGTGAGTACATTGT 60.048 40.000 0.00 0.00 39.39 2.71
2642 2711 6.151480 TCGACCATAAGTGTGAGTACATTGTA 59.849 38.462 0.00 0.00 39.39 2.41
2643 2712 6.252869 CGACCATAAGTGTGAGTACATTGTAC 59.747 42.308 17.43 17.43 39.39 2.90
2644 2713 6.999950 ACCATAAGTGTGAGTACATTGTACA 58.000 36.000 24.80 7.74 39.39 2.90
2645 2714 6.872020 ACCATAAGTGTGAGTACATTGTACAC 59.128 38.462 24.80 19.88 39.39 2.90
2646 2715 6.034577 CCATAAGTGTGAGTACATTGTACACG 59.965 42.308 24.80 7.62 44.58 4.49
2647 2716 3.909430 AGTGTGAGTACATTGTACACGG 58.091 45.455 24.80 0.00 44.58 4.94
2648 2717 2.991190 GTGTGAGTACATTGTACACGGG 59.009 50.000 24.80 0.00 39.39 5.28
2649 2718 1.997606 GTGAGTACATTGTACACGGGC 59.002 52.381 24.80 11.72 0.00 6.13
2650 2719 1.619332 TGAGTACATTGTACACGGGCA 59.381 47.619 24.80 13.36 0.00 5.36
2651 2720 1.997606 GAGTACATTGTACACGGGCAC 59.002 52.381 24.80 2.30 0.00 5.01
2652 2721 1.621814 AGTACATTGTACACGGGCACT 59.378 47.619 24.80 4.51 0.00 4.40
2653 2722 1.730064 GTACATTGTACACGGGCACTG 59.270 52.381 19.65 0.00 42.99 3.66
2654 2723 0.394938 ACATTGTACACGGGCACTGA 59.605 50.000 0.00 0.00 38.67 3.41
2655 2724 1.003118 ACATTGTACACGGGCACTGAT 59.997 47.619 0.00 0.00 38.67 2.90
2656 2725 1.665679 CATTGTACACGGGCACTGATC 59.334 52.381 0.00 0.00 38.67 2.92
2657 2726 0.682292 TTGTACACGGGCACTGATCA 59.318 50.000 0.00 0.00 38.67 2.92
2658 2727 0.682292 TGTACACGGGCACTGATCAA 59.318 50.000 0.00 0.00 38.67 2.57
2659 2728 1.277842 TGTACACGGGCACTGATCAAT 59.722 47.619 0.00 0.00 38.67 2.57
2660 2729 2.290008 TGTACACGGGCACTGATCAATT 60.290 45.455 0.00 0.00 38.67 2.32
2661 2730 1.909700 ACACGGGCACTGATCAATTT 58.090 45.000 0.00 0.00 38.67 1.82
2662 2731 1.541147 ACACGGGCACTGATCAATTTG 59.459 47.619 0.00 0.00 38.67 2.32
2663 2732 1.811965 CACGGGCACTGATCAATTTGA 59.188 47.619 0.75 0.75 38.67 2.69
2664 2733 2.424601 CACGGGCACTGATCAATTTGAT 59.575 45.455 11.64 11.64 40.34 2.57
2690 2759 5.947228 TTTTCAGCTAGAAACTCATGTGG 57.053 39.130 9.83 0.00 45.48 4.17
2691 2760 3.616956 TCAGCTAGAAACTCATGTGGG 57.383 47.619 0.00 0.00 0.00 4.61
2692 2761 3.173151 TCAGCTAGAAACTCATGTGGGA 58.827 45.455 0.00 0.00 0.00 4.37
2693 2762 3.582647 TCAGCTAGAAACTCATGTGGGAA 59.417 43.478 0.00 0.00 0.00 3.97
2694 2763 3.686726 CAGCTAGAAACTCATGTGGGAAC 59.313 47.826 0.00 0.00 0.00 3.62
2695 2764 3.327757 AGCTAGAAACTCATGTGGGAACA 59.672 43.478 0.00 0.00 38.70 3.18
2710 2779 5.497464 TGGGAACACACATAGAAGAATCA 57.503 39.130 0.00 0.00 33.40 2.57
2711 2780 5.875224 TGGGAACACACATAGAAGAATCAA 58.125 37.500 0.00 0.00 33.40 2.57
2712 2781 5.705441 TGGGAACACACATAGAAGAATCAAC 59.295 40.000 0.00 0.00 33.40 3.18
2713 2782 5.940470 GGGAACACACATAGAAGAATCAACT 59.060 40.000 0.00 0.00 0.00 3.16
2714 2783 6.128172 GGGAACACACATAGAAGAATCAACTG 60.128 42.308 0.00 0.00 0.00 3.16
2715 2784 6.128172 GGAACACACATAGAAGAATCAACTGG 60.128 42.308 0.00 0.00 0.00 4.00
2716 2785 5.248640 ACACACATAGAAGAATCAACTGGG 58.751 41.667 0.00 0.00 0.00 4.45
2717 2786 5.013079 ACACACATAGAAGAATCAACTGGGA 59.987 40.000 0.00 0.00 0.00 4.37
2718 2787 5.583854 CACACATAGAAGAATCAACTGGGAG 59.416 44.000 0.00 0.00 0.00 4.30
2719 2788 5.121811 CACATAGAAGAATCAACTGGGAGG 58.878 45.833 0.00 0.00 0.00 4.30
2720 2789 2.797177 AGAAGAATCAACTGGGAGGC 57.203 50.000 0.00 0.00 0.00 4.70
2721 2790 2.273619 AGAAGAATCAACTGGGAGGCT 58.726 47.619 0.00 0.00 0.00 4.58
2722 2791 3.454858 AGAAGAATCAACTGGGAGGCTA 58.545 45.455 0.00 0.00 0.00 3.93
2723 2792 4.043596 AGAAGAATCAACTGGGAGGCTAT 58.956 43.478 0.00 0.00 0.00 2.97
2731 2800 6.134535 TCAACTGGGAGGCTATCTTAAAAA 57.865 37.500 0.00 0.00 0.00 1.94
2793 2863 1.142965 CGCCCACACGTATGGATCA 59.857 57.895 16.19 0.00 43.02 2.92
2811 2881 3.417069 TCATCGTCCAACCAATTCTGT 57.583 42.857 0.00 0.00 0.00 3.41
2832 2902 0.996462 CGAATCTTGGCGCGTTCTAA 59.004 50.000 8.43 0.00 0.00 2.10
2915 2988 0.319469 CATTTTTCACCACACGGGGC 60.319 55.000 0.00 0.00 42.91 5.80
2958 3034 6.373779 CAATTCGCTCACACATTAGTTTTCT 58.626 36.000 0.00 0.00 0.00 2.52
3008 3084 0.390603 TTATCACTTCGCCCACACGG 60.391 55.000 0.00 0.00 0.00 4.94
3118 3196 3.986277 TGTCAACTCTCTTTTACCCGAC 58.014 45.455 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
242 243 0.242825 TCGTCGTCCGCTTCTTCATT 59.757 50.000 0.00 0.00 36.19 2.57
376 377 2.123640 GGGAGAGAGTAGCGGCCT 60.124 66.667 0.00 0.00 0.00 5.19
509 511 4.461081 GCTGTTCATGGGTGGTGTTTATTA 59.539 41.667 0.00 0.00 0.00 0.98
524 526 5.163478 GGCTGGAAAAGATATTGCTGTTCAT 60.163 40.000 0.00 0.00 34.45 2.57
527 529 3.448660 GGGCTGGAAAAGATATTGCTGTT 59.551 43.478 0.00 0.00 0.00 3.16
706 708 4.031314 TCGAATGAGTTAAAGATTCGTGCG 59.969 41.667 17.52 8.34 45.50 5.34
792 796 2.749044 ACGGCCTTGCTCTGCATG 60.749 61.111 0.00 0.00 38.76 4.06
793 797 2.437359 GACGGCCTTGCTCTGCAT 60.437 61.111 0.00 0.00 38.76 3.96
794 798 4.704833 GGACGGCCTTGCTCTGCA 62.705 66.667 0.00 0.00 36.47 4.41
796 800 3.710722 AGGGACGGCCTTGCTCTG 61.711 66.667 7.57 0.00 0.00 3.35
797 801 3.710722 CAGGGACGGCCTTGCTCT 61.711 66.667 6.43 0.00 34.22 4.09
798 802 3.959991 GACAGGGACGGCCTTGCTC 62.960 68.421 21.29 12.54 44.67 4.26
799 803 4.021925 GACAGGGACGGCCTTGCT 62.022 66.667 21.29 6.78 44.67 3.91
800 804 3.959991 GAGACAGGGACGGCCTTGC 62.960 68.421 21.29 12.55 44.67 4.01
801 805 2.266055 GAGACAGGGACGGCCTTG 59.734 66.667 19.62 19.62 46.15 3.61
802 806 3.003763 GGAGACAGGGACGGCCTT 61.004 66.667 7.57 0.00 0.00 4.35
840 844 3.780173 GCCTCCGGCTTCTGCTCT 61.780 66.667 0.00 0.00 46.69 4.09
866 870 2.827190 CGACGGGATCAGGGACGA 60.827 66.667 0.00 0.00 0.00 4.20
989 1017 3.953712 TCTTGGACATCTGTCGCTTAA 57.046 42.857 4.36 0.00 45.65 1.85
996 1024 2.304180 CCAGACCTTCTTGGACATCTGT 59.696 50.000 0.00 0.00 35.73 3.41
1571 1599 3.691342 CGTCGTCCTCCTGGCCAA 61.691 66.667 7.01 0.00 0.00 4.52
1754 1782 1.303317 AACGTGATCACCTTGCCCC 60.303 57.895 20.03 0.00 0.00 5.80
1795 1823 2.582636 AGGGTATTGCCTTTGATCAGGT 59.417 45.455 0.00 0.00 36.15 4.00
1796 1824 2.954318 CAGGGTATTGCCTTTGATCAGG 59.046 50.000 0.00 0.00 37.43 3.86
1818 1846 2.028112 CCACGAACTTCATCTTCTCCCA 60.028 50.000 0.00 0.00 0.00 4.37
1918 1947 1.068083 GATCATCTTCTCCGGCGCA 59.932 57.895 10.83 0.00 0.00 6.09
2036 2101 2.436824 GGCGGCCCTGAACTTCTC 60.437 66.667 8.12 0.00 0.00 2.87
2146 2211 1.004560 CTTGGAGAAGCCGCTCACA 60.005 57.895 0.00 0.00 40.66 3.58
2266 2331 2.696506 ACACGACAGTCGATCTAGTCA 58.303 47.619 29.53 0.00 43.74 3.41
2287 2356 6.370994 CAGAAAAAGAAGCTAAGCTGATGAGA 59.629 38.462 0.00 0.00 39.62 3.27
2307 2376 5.700832 AGCTGTTCACAATACGATTCAGAAA 59.299 36.000 0.00 0.00 0.00 2.52
2335 2404 2.544359 CGTCACCGTGCAAAGACG 59.456 61.111 14.22 14.22 46.12 4.18
2349 2418 2.478879 GCAACTCTCTAGAGCTTCCGTC 60.479 54.545 15.35 0.00 45.79 4.79
2356 2425 3.311486 ACTTGTGCAACTCTCTAGAGC 57.689 47.619 15.35 4.38 45.79 4.09
2358 2427 9.772973 TTTAAATAACTTGTGCAACTCTCTAGA 57.227 29.630 0.00 0.00 38.04 2.43
2361 2430 9.120538 TCTTTTAAATAACTTGTGCAACTCTCT 57.879 29.630 0.00 0.00 38.04 3.10
2362 2431 9.730420 TTCTTTTAAATAACTTGTGCAACTCTC 57.270 29.630 0.00 0.00 38.04 3.20
2363 2432 9.736023 CTTCTTTTAAATAACTTGTGCAACTCT 57.264 29.630 0.00 0.00 38.04 3.24
2364 2433 9.730420 TCTTCTTTTAAATAACTTGTGCAACTC 57.270 29.630 0.00 0.00 38.04 3.01
2372 2441 9.922951 CGCGAATTTCTTCTTTTAAATAACTTG 57.077 29.630 0.00 0.00 0.00 3.16
2373 2442 9.124807 CCGCGAATTTCTTCTTTTAAATAACTT 57.875 29.630 8.23 0.00 0.00 2.66
2374 2443 8.294577 ACCGCGAATTTCTTCTTTTAAATAACT 58.705 29.630 8.23 0.00 0.00 2.24
2375 2444 8.443898 ACCGCGAATTTCTTCTTTTAAATAAC 57.556 30.769 8.23 0.00 0.00 1.89
2376 2445 9.120422 GAACCGCGAATTTCTTCTTTTAAATAA 57.880 29.630 8.23 0.00 0.00 1.40
2377 2446 8.291032 TGAACCGCGAATTTCTTCTTTTAAATA 58.709 29.630 8.23 0.00 0.00 1.40
2378 2447 7.142680 TGAACCGCGAATTTCTTCTTTTAAAT 58.857 30.769 8.23 0.00 0.00 1.40
2379 2448 6.496571 TGAACCGCGAATTTCTTCTTTTAAA 58.503 32.000 8.23 0.00 0.00 1.52
2380 2449 6.062434 TGAACCGCGAATTTCTTCTTTTAA 57.938 33.333 8.23 0.00 0.00 1.52
2381 2450 5.676532 TGAACCGCGAATTTCTTCTTTTA 57.323 34.783 8.23 0.00 0.00 1.52
2382 2451 4.561735 TGAACCGCGAATTTCTTCTTTT 57.438 36.364 8.23 0.00 0.00 2.27
2383 2452 4.766404 ATGAACCGCGAATTTCTTCTTT 57.234 36.364 8.23 0.00 0.00 2.52
2384 2453 5.873179 TTATGAACCGCGAATTTCTTCTT 57.127 34.783 8.23 0.00 0.00 2.52
2385 2454 6.436843 AATTATGAACCGCGAATTTCTTCT 57.563 33.333 8.23 0.00 0.00 2.85
2386 2455 7.138126 GAAATTATGAACCGCGAATTTCTTC 57.862 36.000 23.39 12.56 41.69 2.87
2388 2457 6.436843 AGAAATTATGAACCGCGAATTTCT 57.563 33.333 25.81 25.81 46.37 2.52
2389 2458 7.061789 ACAAAGAAATTATGAACCGCGAATTTC 59.938 33.333 23.30 23.30 43.70 2.17
2390 2459 6.866248 ACAAAGAAATTATGAACCGCGAATTT 59.134 30.769 8.23 10.79 34.91 1.82
2391 2460 6.386654 ACAAAGAAATTATGAACCGCGAATT 58.613 32.000 8.23 0.11 0.00 2.17
2392 2461 5.949735 ACAAAGAAATTATGAACCGCGAAT 58.050 33.333 8.23 0.00 0.00 3.34
2393 2462 5.365403 ACAAAGAAATTATGAACCGCGAA 57.635 34.783 8.23 0.00 0.00 4.70
2394 2463 6.671614 ATACAAAGAAATTATGAACCGCGA 57.328 33.333 8.23 0.00 0.00 5.87
2395 2464 7.734538 AAATACAAAGAAATTATGAACCGCG 57.265 32.000 0.00 0.00 0.00 6.46
2421 2490 9.131791 GGGTGGTATAAATAAAATCACAGACAT 57.868 33.333 0.00 0.00 0.00 3.06
2422 2491 8.110271 TGGGTGGTATAAATAAAATCACAGACA 58.890 33.333 0.00 0.00 0.00 3.41
2423 2492 8.403236 GTGGGTGGTATAAATAAAATCACAGAC 58.597 37.037 0.00 0.00 0.00 3.51
2424 2493 8.110271 TGTGGGTGGTATAAATAAAATCACAGA 58.890 33.333 0.00 0.00 0.00 3.41
2425 2494 8.188139 GTGTGGGTGGTATAAATAAAATCACAG 58.812 37.037 0.00 0.00 32.11 3.66
2426 2495 7.891183 AGTGTGGGTGGTATAAATAAAATCACA 59.109 33.333 0.00 0.00 0.00 3.58
2427 2496 8.288689 AGTGTGGGTGGTATAAATAAAATCAC 57.711 34.615 0.00 0.00 0.00 3.06
2428 2497 8.744652 CAAGTGTGGGTGGTATAAATAAAATCA 58.255 33.333 0.00 0.00 0.00 2.57
2429 2498 8.194769 CCAAGTGTGGGTGGTATAAATAAAATC 58.805 37.037 0.00 0.00 41.77 2.17
2430 2499 8.073467 CCAAGTGTGGGTGGTATAAATAAAAT 57.927 34.615 0.00 0.00 41.77 1.82
2431 2500 7.469537 CCAAGTGTGGGTGGTATAAATAAAA 57.530 36.000 0.00 0.00 41.77 1.52
2446 2515 2.222027 GTCAGAAAGTCCCAAGTGTGG 58.778 52.381 0.00 0.00 45.53 4.17
2447 2516 2.158755 AGGTCAGAAAGTCCCAAGTGTG 60.159 50.000 0.00 0.00 0.00 3.82
2448 2517 2.127708 AGGTCAGAAAGTCCCAAGTGT 58.872 47.619 0.00 0.00 0.00 3.55
2449 2518 2.938956 AGGTCAGAAAGTCCCAAGTG 57.061 50.000 0.00 0.00 0.00 3.16
2450 2519 4.430441 AGATAGGTCAGAAAGTCCCAAGT 58.570 43.478 0.00 0.00 0.00 3.16
2451 2520 5.428184 AAGATAGGTCAGAAAGTCCCAAG 57.572 43.478 0.00 0.00 0.00 3.61
2452 2521 6.023603 AGTAAGATAGGTCAGAAAGTCCCAA 58.976 40.000 0.00 0.00 0.00 4.12
2453 2522 5.590818 AGTAAGATAGGTCAGAAAGTCCCA 58.409 41.667 0.00 0.00 0.00 4.37
2454 2523 7.506261 TCATAGTAAGATAGGTCAGAAAGTCCC 59.494 40.741 0.00 0.00 0.00 4.46
2455 2524 8.466617 TCATAGTAAGATAGGTCAGAAAGTCC 57.533 38.462 0.00 0.00 0.00 3.85
2456 2525 9.906660 CATCATAGTAAGATAGGTCAGAAAGTC 57.093 37.037 0.00 0.00 0.00 3.01
2457 2526 9.427821 ACATCATAGTAAGATAGGTCAGAAAGT 57.572 33.333 0.00 0.00 0.00 2.66
2472 2541 9.537192 CGGTGTTTAAGGATTACATCATAGTAA 57.463 33.333 0.00 0.00 38.25 2.24
2473 2542 8.698210 ACGGTGTTTAAGGATTACATCATAGTA 58.302 33.333 0.00 0.00 0.00 1.82
2474 2543 7.562135 ACGGTGTTTAAGGATTACATCATAGT 58.438 34.615 0.00 0.00 0.00 2.12
2475 2544 7.170998 GGACGGTGTTTAAGGATTACATCATAG 59.829 40.741 0.00 0.00 0.00 2.23
2476 2545 6.987992 GGACGGTGTTTAAGGATTACATCATA 59.012 38.462 0.00 0.00 0.00 2.15
2477 2546 5.820947 GGACGGTGTTTAAGGATTACATCAT 59.179 40.000 0.00 0.00 0.00 2.45
2478 2547 5.046159 AGGACGGTGTTTAAGGATTACATCA 60.046 40.000 0.00 0.00 0.00 3.07
2479 2548 5.425630 AGGACGGTGTTTAAGGATTACATC 58.574 41.667 0.00 0.00 0.00 3.06
2480 2549 5.431179 AGGACGGTGTTTAAGGATTACAT 57.569 39.130 0.00 0.00 0.00 2.29
2481 2550 4.895668 AGGACGGTGTTTAAGGATTACA 57.104 40.909 0.00 0.00 0.00 2.41
2482 2551 4.999311 ACAAGGACGGTGTTTAAGGATTAC 59.001 41.667 0.00 0.00 0.00 1.89
2483 2552 5.231702 ACAAGGACGGTGTTTAAGGATTA 57.768 39.130 0.00 0.00 0.00 1.75
2484 2553 4.070009 GACAAGGACGGTGTTTAAGGATT 58.930 43.478 0.00 0.00 0.00 3.01
2485 2554 3.671716 GACAAGGACGGTGTTTAAGGAT 58.328 45.455 0.00 0.00 0.00 3.24
2486 2555 2.546373 CGACAAGGACGGTGTTTAAGGA 60.546 50.000 0.00 0.00 0.00 3.36
2487 2556 1.796459 CGACAAGGACGGTGTTTAAGG 59.204 52.381 0.00 0.00 0.00 2.69
2488 2557 1.796459 CCGACAAGGACGGTGTTTAAG 59.204 52.381 0.00 0.00 45.00 1.85
2489 2558 1.411977 TCCGACAAGGACGGTGTTTAA 59.588 47.619 0.00 0.00 45.98 1.52
2490 2559 1.039068 TCCGACAAGGACGGTGTTTA 58.961 50.000 0.00 0.00 45.98 2.01
2491 2560 1.824658 TCCGACAAGGACGGTGTTT 59.175 52.632 0.00 0.00 45.98 2.83
2492 2561 3.541072 TCCGACAAGGACGGTGTT 58.459 55.556 0.00 0.00 45.98 3.32
2502 2571 0.601057 TGAGCGACTTGATCCGACAA 59.399 50.000 0.00 0.00 29.76 3.18
2503 2572 0.817654 ATGAGCGACTTGATCCGACA 59.182 50.000 0.00 0.00 29.76 4.35
2504 2573 1.202302 TCATGAGCGACTTGATCCGAC 60.202 52.381 0.00 0.00 29.76 4.79
2505 2574 1.102978 TCATGAGCGACTTGATCCGA 58.897 50.000 0.00 0.00 29.76 4.55
2506 2575 1.203928 GTCATGAGCGACTTGATCCG 58.796 55.000 0.00 0.00 35.64 4.18
2507 2576 1.929836 GTGTCATGAGCGACTTGATCC 59.070 52.381 0.00 0.00 36.82 3.36
2508 2577 1.929836 GGTGTCATGAGCGACTTGATC 59.070 52.381 0.00 0.00 36.82 2.92
2509 2578 1.552337 AGGTGTCATGAGCGACTTGAT 59.448 47.619 0.00 0.00 36.82 2.57
2510 2579 0.969149 AGGTGTCATGAGCGACTTGA 59.031 50.000 0.00 0.00 36.82 3.02
2511 2580 1.354040 GAGGTGTCATGAGCGACTTG 58.646 55.000 0.00 0.00 36.82 3.16
2512 2581 0.247736 GGAGGTGTCATGAGCGACTT 59.752 55.000 0.00 0.00 36.82 3.01
2513 2582 0.900182 TGGAGGTGTCATGAGCGACT 60.900 55.000 0.00 0.00 36.82 4.18
2514 2583 0.459237 CTGGAGGTGTCATGAGCGAC 60.459 60.000 0.00 0.00 36.40 5.19
2515 2584 1.893062 CTGGAGGTGTCATGAGCGA 59.107 57.895 0.00 0.00 0.00 4.93
2516 2585 1.812922 GCTGGAGGTGTCATGAGCG 60.813 63.158 0.00 0.00 0.00 5.03
2517 2586 0.743701 CAGCTGGAGGTGTCATGAGC 60.744 60.000 5.57 0.00 38.61 4.26
2518 2587 0.900421 TCAGCTGGAGGTGTCATGAG 59.100 55.000 15.13 0.00 43.46 2.90
2519 2588 0.610174 GTCAGCTGGAGGTGTCATGA 59.390 55.000 15.13 0.00 43.46 3.07
2520 2589 0.392193 GGTCAGCTGGAGGTGTCATG 60.392 60.000 15.13 0.00 43.46 3.07
2521 2590 0.837691 TGGTCAGCTGGAGGTGTCAT 60.838 55.000 15.13 0.00 43.46 3.06
2522 2591 1.459348 TGGTCAGCTGGAGGTGTCA 60.459 57.895 15.13 3.80 43.46 3.58
2523 2592 1.294780 CTGGTCAGCTGGAGGTGTC 59.705 63.158 15.13 0.59 43.46 3.67
2524 2593 3.476386 CTGGTCAGCTGGAGGTGT 58.524 61.111 15.13 0.00 43.46 4.16
2542 2611 1.227089 CCGATGTGGCTCCGAAGAG 60.227 63.158 0.00 0.00 43.57 2.85
2543 2612 2.892640 CCGATGTGGCTCCGAAGA 59.107 61.111 0.00 0.00 0.00 2.87
2552 2621 1.005347 GTTATTTCGTCGCCGATGTGG 60.005 52.381 6.17 0.00 43.80 4.17
2553 2622 1.656594 TGTTATTTCGTCGCCGATGTG 59.343 47.619 6.17 0.00 43.80 3.21
2554 2623 1.657094 GTGTTATTTCGTCGCCGATGT 59.343 47.619 6.17 0.00 43.80 3.06
2555 2624 1.656594 TGTGTTATTTCGTCGCCGATG 59.343 47.619 0.00 0.00 43.80 3.84
2556 2625 1.657094 GTGTGTTATTTCGTCGCCGAT 59.343 47.619 0.00 0.00 43.80 4.18
2557 2626 1.062258 GTGTGTTATTTCGTCGCCGA 58.938 50.000 0.00 0.00 42.41 5.54
2558 2627 0.785378 TGTGTGTTATTTCGTCGCCG 59.215 50.000 0.00 0.00 0.00 6.46
2559 2628 2.158841 ACATGTGTGTTATTTCGTCGCC 59.841 45.455 0.00 0.00 34.01 5.54
2560 2629 3.152983 CACATGTGTGTTATTTCGTCGC 58.847 45.455 18.03 0.00 40.96 5.19
2573 2642 0.543277 ATCGATCCCAGCACATGTGT 59.457 50.000 26.01 10.99 0.00 3.72
2574 2643 1.671979 AATCGATCCCAGCACATGTG 58.328 50.000 21.83 21.83 0.00 3.21
2575 2644 2.435805 AGTAATCGATCCCAGCACATGT 59.564 45.455 0.00 0.00 0.00 3.21
2576 2645 3.117491 AGTAATCGATCCCAGCACATG 57.883 47.619 0.00 0.00 0.00 3.21
2577 2646 4.262635 CCTTAGTAATCGATCCCAGCACAT 60.263 45.833 0.00 0.00 0.00 3.21
2578 2647 3.069586 CCTTAGTAATCGATCCCAGCACA 59.930 47.826 0.00 0.00 0.00 4.57
2579 2648 3.654414 CCTTAGTAATCGATCCCAGCAC 58.346 50.000 0.00 0.00 0.00 4.40
2580 2649 2.037251 GCCTTAGTAATCGATCCCAGCA 59.963 50.000 0.00 0.00 0.00 4.41
2581 2650 2.037251 TGCCTTAGTAATCGATCCCAGC 59.963 50.000 0.00 0.00 0.00 4.85
2582 2651 4.248859 CATGCCTTAGTAATCGATCCCAG 58.751 47.826 0.00 0.00 0.00 4.45
2583 2652 3.646162 ACATGCCTTAGTAATCGATCCCA 59.354 43.478 0.00 0.00 0.00 4.37
2584 2653 4.246458 GACATGCCTTAGTAATCGATCCC 58.754 47.826 0.00 0.00 0.00 3.85
2585 2654 4.883083 TGACATGCCTTAGTAATCGATCC 58.117 43.478 0.00 0.00 0.00 3.36
2586 2655 7.293745 CAATTGACATGCCTTAGTAATCGATC 58.706 38.462 0.00 0.00 0.00 3.69
2587 2656 6.293626 GCAATTGACATGCCTTAGTAATCGAT 60.294 38.462 10.34 0.00 37.85 3.59
2588 2657 5.007626 GCAATTGACATGCCTTAGTAATCGA 59.992 40.000 10.34 0.00 37.85 3.59
2589 2658 5.008019 AGCAATTGACATGCCTTAGTAATCG 59.992 40.000 10.34 0.00 44.91 3.34
2590 2659 6.382869 AGCAATTGACATGCCTTAGTAATC 57.617 37.500 10.34 0.00 44.91 1.75
2591 2660 6.780457 AAGCAATTGACATGCCTTAGTAAT 57.220 33.333 10.34 0.00 44.91 1.89
2592 2661 6.434028 AGAAAGCAATTGACATGCCTTAGTAA 59.566 34.615 10.34 0.00 44.91 2.24
2593 2662 5.945784 AGAAAGCAATTGACATGCCTTAGTA 59.054 36.000 10.34 0.00 44.91 1.82
2594 2663 4.768968 AGAAAGCAATTGACATGCCTTAGT 59.231 37.500 10.34 0.00 44.91 2.24
2595 2664 5.320549 AGAAAGCAATTGACATGCCTTAG 57.679 39.130 10.34 0.00 44.91 2.18
2596 2665 4.142622 CGAGAAAGCAATTGACATGCCTTA 60.143 41.667 10.34 0.00 44.91 2.69
2597 2666 3.366679 CGAGAAAGCAATTGACATGCCTT 60.367 43.478 10.34 0.00 44.91 4.35
2598 2667 2.163010 CGAGAAAGCAATTGACATGCCT 59.837 45.455 10.34 0.00 44.91 4.75
2599 2668 2.162208 TCGAGAAAGCAATTGACATGCC 59.838 45.455 10.34 0.00 44.91 4.40
2600 2669 3.166657 GTCGAGAAAGCAATTGACATGC 58.833 45.455 10.34 0.00 44.15 4.06
2601 2670 3.189080 TGGTCGAGAAAGCAATTGACATG 59.811 43.478 10.34 0.00 32.37 3.21
2602 2671 3.411446 TGGTCGAGAAAGCAATTGACAT 58.589 40.909 10.34 0.00 32.37 3.06
2603 2672 2.844946 TGGTCGAGAAAGCAATTGACA 58.155 42.857 10.34 0.00 32.37 3.58
2604 2673 5.122396 ACTTATGGTCGAGAAAGCAATTGAC 59.878 40.000 10.34 0.30 0.00 3.18
2605 2674 5.122239 CACTTATGGTCGAGAAAGCAATTGA 59.878 40.000 10.34 0.00 0.00 2.57
2606 2675 5.106555 ACACTTATGGTCGAGAAAGCAATTG 60.107 40.000 0.00 0.00 0.00 2.32
2607 2676 5.003804 ACACTTATGGTCGAGAAAGCAATT 58.996 37.500 0.00 0.00 0.00 2.32
2608 2677 4.393062 CACACTTATGGTCGAGAAAGCAAT 59.607 41.667 0.00 0.00 0.00 3.56
2609 2678 3.745975 CACACTTATGGTCGAGAAAGCAA 59.254 43.478 0.00 0.00 0.00 3.91
2610 2679 3.006430 TCACACTTATGGTCGAGAAAGCA 59.994 43.478 0.00 0.00 0.00 3.91
2611 2680 3.585862 TCACACTTATGGTCGAGAAAGC 58.414 45.455 0.00 0.00 0.00 3.51
2612 2681 4.810790 ACTCACACTTATGGTCGAGAAAG 58.189 43.478 0.00 0.00 32.09 2.62
2613 2682 4.866508 ACTCACACTTATGGTCGAGAAA 57.133 40.909 0.00 0.00 32.09 2.52
2614 2683 4.763279 TGTACTCACACTTATGGTCGAGAA 59.237 41.667 0.00 0.00 32.09 2.87
2615 2684 4.329392 TGTACTCACACTTATGGTCGAGA 58.671 43.478 0.00 0.00 32.09 4.04
2616 2685 4.696899 TGTACTCACACTTATGGTCGAG 57.303 45.455 0.00 0.00 33.23 4.04
2617 2686 5.047590 ACAATGTACTCACACTTATGGTCGA 60.048 40.000 0.00 0.00 37.54 4.20
2618 2687 5.168569 ACAATGTACTCACACTTATGGTCG 58.831 41.667 0.00 0.00 37.54 4.79
2619 2688 7.063074 GTGTACAATGTACTCACACTTATGGTC 59.937 40.741 22.22 0.00 37.54 4.02
2620 2689 6.872020 GTGTACAATGTACTCACACTTATGGT 59.128 38.462 22.22 0.00 37.54 3.55
2621 2690 6.034577 CGTGTACAATGTACTCACACTTATGG 59.965 42.308 22.22 0.99 37.54 2.74
2622 2691 6.034577 CCGTGTACAATGTACTCACACTTATG 59.965 42.308 22.22 6.76 37.54 1.90
2623 2692 6.097356 CCGTGTACAATGTACTCACACTTAT 58.903 40.000 22.22 0.00 37.54 1.73
2624 2693 5.463286 CCGTGTACAATGTACTCACACTTA 58.537 41.667 22.22 0.00 37.54 2.24
2625 2694 4.304110 CCGTGTACAATGTACTCACACTT 58.696 43.478 22.22 0.00 37.54 3.16
2626 2695 3.305813 CCCGTGTACAATGTACTCACACT 60.306 47.826 22.22 0.00 37.54 3.55
2627 2696 2.991190 CCCGTGTACAATGTACTCACAC 59.009 50.000 22.22 14.48 37.54 3.82
2628 2697 2.610976 GCCCGTGTACAATGTACTCACA 60.611 50.000 22.22 3.93 39.52 3.58
2629 2698 1.997606 GCCCGTGTACAATGTACTCAC 59.002 52.381 22.22 13.12 0.00 3.51
2630 2699 1.619332 TGCCCGTGTACAATGTACTCA 59.381 47.619 22.22 10.64 0.00 3.41
2631 2700 1.997606 GTGCCCGTGTACAATGTACTC 59.002 52.381 22.22 17.86 0.00 2.59
2632 2701 1.621814 AGTGCCCGTGTACAATGTACT 59.378 47.619 22.22 1.24 0.00 2.73
2633 2702 1.730064 CAGTGCCCGTGTACAATGTAC 59.270 52.381 16.05 16.05 0.00 2.90
2634 2703 1.619332 TCAGTGCCCGTGTACAATGTA 59.381 47.619 0.00 0.00 33.78 2.29
2635 2704 0.394938 TCAGTGCCCGTGTACAATGT 59.605 50.000 0.00 0.00 33.78 2.71
2636 2705 1.665679 GATCAGTGCCCGTGTACAATG 59.334 52.381 0.00 0.00 33.37 2.82
2637 2706 1.277842 TGATCAGTGCCCGTGTACAAT 59.722 47.619 0.00 0.00 0.00 2.71
2638 2707 0.682292 TGATCAGTGCCCGTGTACAA 59.318 50.000 0.00 0.00 0.00 2.41
2639 2708 0.682292 TTGATCAGTGCCCGTGTACA 59.318 50.000 0.00 0.00 0.00 2.90
2640 2709 2.024176 ATTGATCAGTGCCCGTGTAC 57.976 50.000 0.00 0.00 0.00 2.90
2641 2710 2.746904 CAAATTGATCAGTGCCCGTGTA 59.253 45.455 0.00 0.00 0.00 2.90
2642 2711 1.541147 CAAATTGATCAGTGCCCGTGT 59.459 47.619 0.00 0.00 0.00 4.49
2643 2712 1.811965 TCAAATTGATCAGTGCCCGTG 59.188 47.619 0.00 0.00 0.00 4.94
2644 2713 2.198827 TCAAATTGATCAGTGCCCGT 57.801 45.000 0.00 0.00 0.00 5.28
2667 2736 5.241506 CCCACATGAGTTTCTAGCTGAAAAA 59.758 40.000 0.00 0.60 45.10 1.94
2668 2737 4.761739 CCCACATGAGTTTCTAGCTGAAAA 59.238 41.667 0.00 2.80 45.10 2.29
2669 2738 4.041567 TCCCACATGAGTTTCTAGCTGAAA 59.958 41.667 0.00 1.62 41.85 2.69
2670 2739 3.582647 TCCCACATGAGTTTCTAGCTGAA 59.417 43.478 0.00 0.00 0.00 3.02
2671 2740 3.173151 TCCCACATGAGTTTCTAGCTGA 58.827 45.455 0.00 0.00 0.00 4.26
2672 2741 3.616956 TCCCACATGAGTTTCTAGCTG 57.383 47.619 0.00 0.00 0.00 4.24
2673 2742 3.327757 TGTTCCCACATGAGTTTCTAGCT 59.672 43.478 0.00 0.00 0.00 3.32
2674 2743 3.437049 GTGTTCCCACATGAGTTTCTAGC 59.563 47.826 0.00 0.00 41.44 3.42
2675 2744 4.641396 TGTGTTCCCACATGAGTTTCTAG 58.359 43.478 0.00 0.00 46.45 2.43
2676 2745 4.698201 TGTGTTCCCACATGAGTTTCTA 57.302 40.909 0.00 0.00 46.45 2.10
2677 2746 3.576078 TGTGTTCCCACATGAGTTTCT 57.424 42.857 0.00 0.00 46.45 2.52
2687 2756 5.245531 TGATTCTTCTATGTGTGTTCCCAC 58.754 41.667 0.00 0.00 42.19 4.61
2688 2757 5.497464 TGATTCTTCTATGTGTGTTCCCA 57.503 39.130 0.00 0.00 0.00 4.37
2689 2758 5.940470 AGTTGATTCTTCTATGTGTGTTCCC 59.060 40.000 0.00 0.00 0.00 3.97
2690 2759 6.128172 CCAGTTGATTCTTCTATGTGTGTTCC 60.128 42.308 0.00 0.00 0.00 3.62
2691 2760 6.128172 CCCAGTTGATTCTTCTATGTGTGTTC 60.128 42.308 0.00 0.00 0.00 3.18
2692 2761 5.707298 CCCAGTTGATTCTTCTATGTGTGTT 59.293 40.000 0.00 0.00 0.00 3.32
2693 2762 5.013079 TCCCAGTTGATTCTTCTATGTGTGT 59.987 40.000 0.00 0.00 0.00 3.72
2694 2763 5.491070 TCCCAGTTGATTCTTCTATGTGTG 58.509 41.667 0.00 0.00 0.00 3.82
2695 2764 5.338708 CCTCCCAGTTGATTCTTCTATGTGT 60.339 44.000 0.00 0.00 0.00 3.72
2696 2765 5.121811 CCTCCCAGTTGATTCTTCTATGTG 58.878 45.833 0.00 0.00 0.00 3.21
2697 2766 4.384647 GCCTCCCAGTTGATTCTTCTATGT 60.385 45.833 0.00 0.00 0.00 2.29
2698 2767 4.133078 GCCTCCCAGTTGATTCTTCTATG 58.867 47.826 0.00 0.00 0.00 2.23
2699 2768 4.043596 AGCCTCCCAGTTGATTCTTCTAT 58.956 43.478 0.00 0.00 0.00 1.98
2700 2769 3.454858 AGCCTCCCAGTTGATTCTTCTA 58.545 45.455 0.00 0.00 0.00 2.10
2701 2770 2.273619 AGCCTCCCAGTTGATTCTTCT 58.726 47.619 0.00 0.00 0.00 2.85
2702 2771 2.797177 AGCCTCCCAGTTGATTCTTC 57.203 50.000 0.00 0.00 0.00 2.87
2703 2772 4.043596 AGATAGCCTCCCAGTTGATTCTT 58.956 43.478 0.00 0.00 0.00 2.52
2704 2773 3.663198 AGATAGCCTCCCAGTTGATTCT 58.337 45.455 0.00 0.00 0.00 2.40
2705 2774 4.429854 AAGATAGCCTCCCAGTTGATTC 57.570 45.455 0.00 0.00 0.00 2.52
2706 2775 5.975988 TTAAGATAGCCTCCCAGTTGATT 57.024 39.130 0.00 0.00 0.00 2.57
2707 2776 5.975988 TTTAAGATAGCCTCCCAGTTGAT 57.024 39.130 0.00 0.00 0.00 2.57
2708 2777 5.772393 TTTTAAGATAGCCTCCCAGTTGA 57.228 39.130 0.00 0.00 0.00 3.18
2731 2800 2.952978 TGGGCATTAGTGTTTCGTTGTT 59.047 40.909 0.00 0.00 0.00 2.83
2732 2801 2.292292 GTGGGCATTAGTGTTTCGTTGT 59.708 45.455 0.00 0.00 0.00 3.32
2734 2803 2.292292 GTGTGGGCATTAGTGTTTCGTT 59.708 45.455 0.00 0.00 0.00 3.85
2811 2881 0.108992 AGAACGCGCCAAGATTCGTA 60.109 50.000 5.73 0.00 34.50 3.43
2897 2967 0.469144 AGCCCCGTGTGGTGAAAAAT 60.469 50.000 0.00 0.00 0.00 1.82
2915 2988 0.447801 GCTAAACGCCCACACATCAG 59.552 55.000 0.00 0.00 0.00 2.90
2948 3022 2.668457 CTCTGCGTGCGAGAAAACTAAT 59.332 45.455 7.59 0.00 0.00 1.73
2949 3023 2.058798 CTCTGCGTGCGAGAAAACTAA 58.941 47.619 7.59 0.00 0.00 2.24
2950 3024 1.668919 CCTCTGCGTGCGAGAAAACTA 60.669 52.381 12.89 0.00 0.00 2.24
3095 3173 5.479375 AGTCGGGTAAAAGAGAGTTGACATA 59.521 40.000 0.00 0.00 0.00 2.29
3118 3196 3.529634 CATGCAAAAACACATGGCAAG 57.470 42.857 0.00 0.00 39.98 4.01
3173 3252 6.449698 CATGTAAAGAGAAAGTGTTGCCATT 58.550 36.000 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.