AutoCloner

Multiple sequence alignment - TraesCS5A01G319300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5A01G319300	chr5A	100.000	2903	0	0	1	2903	531018230	531021132	0.000000e+00	5361.0
1	TraesCS5A01G319300	chr5A	95.789	475	18	2	1067	1539	502229989	502230463	0.000000e+00	765.0
2	TraesCS5A01G319300	chr5D	92.908	2411	132	15	507	2903	417607382	417609767	0.000000e+00	3469.0
3	TraesCS5A01G319300	chr5B	94.301	1667	78	10	507	2166	504774870	504776526	0.000000e+00	2536.0
4	TraesCS5A01G319300	chr5B	86.483	688	82	5	2224	2903	571481896	571482580	0.000000e+00	745.0
5	TraesCS5A01G319300	chr5B	90.504	516	44	4	1	512	504774174	504774688	0.000000e+00	676.0
6	TraesCS5A01G319300	chr6B	87.554	691	79	5	2220	2903	127393672	127392982	0.000000e+00	793.0
7	TraesCS5A01G319300	chr6B	76.688	785	139	31	1095	1852	82326619	82327386	2.100000e-106	396.0
8	TraesCS5A01G319300	chr1A	87.665	681	80	4	2226	2903	372467329	372466650	0.000000e+00	789.0
9	TraesCS5A01G319300	chr1A	74.555	786	159	27	1082	1839	536974442	536975214	3.630000e-79	305.0
10	TraesCS5A01G319300	chr7D	87.318	686	83	3	2219	2903	626291276	626290594	0.000000e+00	782.0
11	TraesCS5A01G319300	chr6A	86.453	716	86	9	2196	2903	224609834	224609122	0.000000e+00	774.0
12	TraesCS5A01G319300	chr4B	86.850	692	82	8	2219	2903	75535360	75536049	0.000000e+00	765.0
13	TraesCS5A01G319300	chr4B	74.911	845	181	28	1019	1846	191079612	191080442	9.890000e-95	357.0
14	TraesCS5A01G319300	chr2A	87.963	648	71	4	2262	2903	711860367	711859721	0.000000e+00	758.0
15	TraesCS5A01G319300	chr2A	75.130	579	121	19	1082	1646	24364026	24364595	1.730000e-62	250.0
16	TraesCS5A01G319300	chr1B	86.357	689	85	5	2220	2903	515051520	515052204	0.000000e+00	743.0
17	TraesCS5A01G319300	chr1B	74.957	583	121	18	1080	1646	49016637	49017210	8.040000e-61	244.0
18	TraesCS5A01G319300	chr1B	74.240	559	121	18	1101	1646	49429992	49430540	2.270000e-51	213.0
19	TraesCS5A01G319300	chr1B	73.077	234	50	12	1613	1839	598836914	598836687	1.440000e-08	71.3
20	TraesCS5A01G319300	chr4A	93.243	296	20	0	1354	1649	24242917	24243212	1.240000e-118	436.0
21	TraesCS5A01G319300	chr4A	75.505	841	161	28	1096	1908	441778035	441777212	1.270000e-98	370.0
22	TraesCS5A01G319300	chr4A	74.799	869	187	28	1000	1852	441944885	441944033	2.130000e-96	363.0
23	TraesCS5A01G319300	chr4A	94.231	52	3	0	1081	1132	24242869	24242920	2.400000e-11	80.5
24	TraesCS5A01G319300	chr4D	76.923	845	143	31	1096	1908	127155345	127156169	1.600000e-117	433.0
25	TraesCS5A01G319300	chrUn	77.330	794	132	31	1095	1852	26997120	26997901	2.670000e-115	425.0
26	TraesCS5A01G319300	chrUn	76.596	846	139	37	1095	1903	26921431	26920608	7.490000e-111	411.0
27	TraesCS5A01G319300	chr2D	75.130	579	121	19	1082	1646	22767701	22768270	1.730000e-62	250.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5A01G319300	chr5A	531018230	531021132	2902	False	5361	5361	100.0000	1	2903	1	chr5A.!!$F2	2902
1	TraesCS5A01G319300	chr5D	417607382	417609767	2385	False	3469	3469	92.9080	507	2903	1	chr5D.!!$F1	2396
2	TraesCS5A01G319300	chr5B	504774174	504776526	2352	False	1606	2536	92.4025	1	2166	2	chr5B.!!$F2	2165
3	TraesCS5A01G319300	chr5B	571481896	571482580	684	False	745	745	86.4830	2224	2903	1	chr5B.!!$F1	679
4	TraesCS5A01G319300	chr6B	127392982	127393672	690	True	793	793	87.5540	2220	2903	1	chr6B.!!$R1	683
5	TraesCS5A01G319300	chr6B	82326619	82327386	767	False	396	396	76.6880	1095	1852	1	chr6B.!!$F1	757
6	TraesCS5A01G319300	chr1A	372466650	372467329	679	True	789	789	87.6650	2226	2903	1	chr1A.!!$R1	677
7	TraesCS5A01G319300	chr1A	536974442	536975214	772	False	305	305	74.5550	1082	1839	1	chr1A.!!$F1	757
8	TraesCS5A01G319300	chr7D	626290594	626291276	682	True	782	782	87.3180	2219	2903	1	chr7D.!!$R1	684
9	TraesCS5A01G319300	chr6A	224609122	224609834	712	True	774	774	86.4530	2196	2903	1	chr6A.!!$R1	707
10	TraesCS5A01G319300	chr4B	75535360	75536049	689	False	765	765	86.8500	2219	2903	1	chr4B.!!$F1	684
11	TraesCS5A01G319300	chr4B	191079612	191080442	830	False	357	357	74.9110	1019	1846	1	chr4B.!!$F2	827
12	TraesCS5A01G319300	chr2A	711859721	711860367	646	True	758	758	87.9630	2262	2903	1	chr2A.!!$R1	641
13	TraesCS5A01G319300	chr2A	24364026	24364595	569	False	250	250	75.1300	1082	1646	1	chr2A.!!$F1	564
14	TraesCS5A01G319300	chr1B	515051520	515052204	684	False	743	743	86.3570	2220	2903	1	chr1B.!!$F3	683
15	TraesCS5A01G319300	chr1B	49016637	49017210	573	False	244	244	74.9570	1080	1646	1	chr1B.!!$F1	566
16	TraesCS5A01G319300	chr1B	49429992	49430540	548	False	213	213	74.2400	1101	1646	1	chr1B.!!$F2	545
17	TraesCS5A01G319300	chr4A	441777212	441778035	823	True	370	370	75.5050	1096	1908	1	chr4A.!!$R1	812
18	TraesCS5A01G319300	chr4A	441944033	441944885	852	True	363	363	74.7990	1000	1852	1	chr4A.!!$R2	852
19	TraesCS5A01G319300	chr4D	127155345	127156169	824	False	433	433	76.9230	1096	1908	1	chr4D.!!$F1	812
20	TraesCS5A01G319300	chrUn	26997120	26997901	781	False	425	425	77.3300	1095	1852	1	chrUn.!!$F1	757
21	TraesCS5A01G319300	chrUn	26920608	26921431	823	True	411	411	76.5960	1095	1903	1	chrUn.!!$R1	808
22	TraesCS5A01G319300	chr2D	22767701	22768270	569	False	250	250	75.1300	1082	1646	1	chr2D.!!$F1	564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
40	41	0.108615	CCTCTTGGTGAACGATCGCT	60.109	55.0	16.6	1.61	36.3	4.93	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1933	2183	0.613012	GTTTGCCAAGGGAGGAGCAT	60.613	55.0	0.0	0.0	34.72	3.79	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
20	21	0.951040	GAGGCGTTCACTGGAGTTGG	60.951	60.000	0.00	0.00	0.00	3.77
25	26	0.398318	GTTCACTGGAGTTGGCCTCT	59.602	55.000	3.32	1.86	40.30	3.69
34	35	0.535102	AGTTGGCCTCTTGGTGAACG	60.535	55.000	3.32	0.00	34.12	3.95
35	36	0.534203	GTTGGCCTCTTGGTGAACGA	60.534	55.000	3.32	0.00	35.27	3.85
40	41	0.108615	CCTCTTGGTGAACGATCGCT	60.109	55.000	16.60	1.61	36.30	4.93
50	51	3.909574	GTGAACGATCGCTAGATAGCTTC	59.090	47.826	16.60	8.59	46.85	3.86
219	220	7.202526	TGAAAAGTCAAATTAGGAAGCAGTTG	58.797	34.615	0.00	0.00	0.00	3.16
230	231	3.624861	AGGAAGCAGTTGATAGCAAATCG	59.375	43.478	0.00	0.00	35.42	3.34
255	256	9.599322	CGCACTTAATTAGCCTTAAATGATTAG	57.401	33.333	0.00	0.00	0.00	1.73
320	324	0.407528	TATGGTGCCCTTGCTTCCAA	59.592	50.000	6.25	0.00	42.18	3.53
321	325	0.471591	ATGGTGCCCTTGCTTCCAAA	60.472	50.000	6.25	0.00	42.18	3.28
322	326	0.471591	TGGTGCCCTTGCTTCCAAAT	60.472	50.000	0.00	0.00	38.50	2.32
338	342	6.540551	GCTTCCAAATGTTTTGGGAAAAACTA	59.459	34.615	16.72	3.30	43.09	2.24
341	345	6.824196	TCCAAATGTTTTGGGAAAAACTAACC	59.176	34.615	16.72	0.00	41.78	2.85
342	346	6.238239	CCAAATGTTTTGGGAAAAACTAACCG	60.238	38.462	10.53	1.85	41.78	4.44
343	347	4.388378	TGTTTTGGGAAAAACTAACCGG	57.612	40.909	0.00	0.00	41.78	5.28
362	366	4.764823	ACCGGAGCAAATAAAAATGTCAGA	59.235	37.500	9.46	0.00	0.00	3.27
391	395	0.927537	TTGGACGCGAATATTCAGCG	59.072	50.000	32.82	32.82	46.94	5.18
398	402	2.472861	CGCGAATATTCAGCGAATGTCT	59.527	45.455	32.00	0.00	45.65	3.41
411	415	4.098416	GCGAATGTCTGATTTTTAGGCAC	58.902	43.478	0.00	0.00	31.79	5.01
418	422	2.986479	CTGATTTTTAGGCACGGCAAAC	59.014	45.455	0.00	0.00	0.00	2.93
435	440	3.388308	CAAACCGAACATTTTCATGGCA	58.612	40.909	0.00	0.00	34.27	4.92
452	457	7.800155	TCATGGCAAATTATATTCGTTGAGA	57.200	32.000	0.00	0.00	0.00	3.27
476	481	8.946085	AGAATGATAAATTTAGTTGACGAGCAA	58.054	29.630	3.94	0.00	0.00	3.91
477	482	9.214953	GAATGATAAATTTAGTTGACGAGCAAG	57.785	33.333	3.94	0.00	37.12	4.01
529	721	2.292103	AAGCAAAACGCAGAAAAGCA	57.708	40.000	0.00	0.00	46.13	3.91
601	793	1.525077	GGACCTTCACCACGTTGCA	60.525	57.895	0.00	0.00	0.00	4.08
610	802	1.363443	CCACGTTGCATTGTTGGCT	59.637	52.632	0.00	0.00	0.00	4.75
736	928	4.572389	CAGCTCCGCTTAGTCATGTTATTT	59.428	41.667	0.00	0.00	36.40	1.40
757	949	6.630444	TTTGTTATCCTACTACTCCTAGCG	57.370	41.667	0.00	0.00	0.00	4.26
863	1055	1.674322	ACCTATGGCCGCAACACAC	60.674	57.895	0.00	0.00	0.00	3.82
912	1104	2.278206	CCCACATCTCGACTCGCG	60.278	66.667	0.00	0.00	42.69	5.87
935	1127	4.999950	GCCGTGATCAATAATCCATCTTCT	59.000	41.667	0.00	0.00	33.01	2.85
936	1128	6.166279	GCCGTGATCAATAATCCATCTTCTA	58.834	40.000	0.00	0.00	33.01	2.10
1122	1322	2.032681	GGCCAGCTCACCGTCTTT	59.967	61.111	0.00	0.00	0.00	2.52
1656	1889	1.020437	GGTTCTACGACTACCCGGAG	58.980	60.000	0.73	0.00	41.67	4.63
1920	2170	3.564218	GCTCCGGCCATCCTCCAT	61.564	66.667	2.24	0.00	0.00	3.41
1970	2220	3.460857	AACGCCTCTAGCTCCTTAATG	57.539	47.619	0.00	0.00	40.39	1.90
2020	2270	4.098055	TCTGCTGTTAATCGTCACTCTC	57.902	45.455	0.00	0.00	0.00	3.20
2059	2311	0.246635	GGGACGACAGTGCAGTACAT	59.753	55.000	0.00	0.00	40.77	2.29
2098	2350	5.643379	TTAGAGGTTTGGTTCAATCATGC	57.357	39.130	0.00	0.00	0.00	4.06
2171	2423	2.175202	GAAATGTATGCCCCAACCACA	58.825	47.619	0.00	0.00	0.00	4.17
2193	2445	3.443329	AGGTGCGTGCAATCAATAATCAA	59.557	39.130	0.00	0.00	0.00	2.57
2203	2455	7.067494	GTGCAATCAATAATCAACCCTTAGAGT	59.933	37.037	0.00	0.00	0.00	3.24
2254	2506	3.942539	TGCGTTTACATCATCGGAATG	57.057	42.857	0.00	0.00	0.00	2.67
2297	2551	3.114616	CTTGCTCGAGTGGCCACG	61.115	66.667	29.68	19.60	36.20	4.94
2545	2808	2.124151	GTCGGCCATTCCATGCCT	60.124	61.111	2.24	0.00	45.71	4.75
2561	2824	2.265367	TGCCTACCACTTCTGGATGAA	58.735	47.619	0.00	0.00	40.55	2.57
2683	2947	3.031013	TGTCCCAAGAGCTCATATCGAA	58.969	45.455	17.77	0.00	0.00	3.71
2715	2979	0.674581	CTTGGCCACGCTCATTCTCA	60.675	55.000	3.88	0.00	0.00	3.27
2726	2990	4.510711	ACGCTCATTCTCAATGATCATGTC	59.489	41.667	9.46	0.00	46.10	3.06
2733	2997	4.947645	TCTCAATGATCATGTCGTGCATA	58.052	39.130	9.46	0.00	35.74	3.14
2790	3056	0.398318	GATCCCAAATCTAGCCGGCT	59.602	55.000	34.85	34.85	0.00	5.52
2891	3158	9.581289	TTGTGGAAATCTAGATTTTTCTTACCA	57.419	29.630	27.24	24.02	40.77	3.25

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
15	16	0.535102	CGTTCACCAAGAGGCCAACT	60.535	55.000	5.01	0.00	39.06	3.16
20	21	1.696832	GCGATCGTTCACCAAGAGGC	61.697	60.000	17.81	0.00	39.06	4.70
25	26	3.550233	GCTATCTAGCGATCGTTCACCAA	60.550	47.826	17.81	0.00	39.82	3.67
50	51	9.453325	TTGCTACCAACGAAATAAAAACTTAAG	57.547	29.630	0.00	0.00	0.00	1.85
66	67	7.920682	CCAATAATATCCAACTTTGCTACCAAC	59.079	37.037	0.00	0.00	0.00	3.77
192	193	8.635765	ACTGCTTCCTAATTTGACTTTTCATA	57.364	30.769	0.00	0.00	0.00	2.15
200	201	6.094048	TGCTATCAACTGCTTCCTAATTTGAC	59.906	38.462	0.00	0.00	0.00	3.18
219	220	6.073003	AGGCTAATTAAGTGCGATTTGCTATC	60.073	38.462	0.00	0.00	46.63	2.08
255	256	6.837992	TCAGTTAAGGTCATTATTTTGCGAC	58.162	36.000	0.00	0.00	0.00	5.19
338	342	5.242838	TCTGACATTTTTATTTGCTCCGGTT	59.757	36.000	0.00	0.00	0.00	4.44
341	345	5.698832	TGTCTGACATTTTTATTTGCTCCG	58.301	37.500	6.36	0.00	0.00	4.63
342	346	8.437742	CAATTGTCTGACATTTTTATTTGCTCC	58.562	33.333	11.86	0.00	0.00	4.70
343	347	9.195411	TCAATTGTCTGACATTTTTATTTGCTC	57.805	29.630	11.86	0.00	0.00	4.26
362	366	2.093306	TCGCGTCCAAGATCAATTGT	57.907	45.000	5.77	0.00	0.00	2.71
391	395	4.662145	CCGTGCCTAAAAATCAGACATTC	58.338	43.478	0.00	0.00	0.00	2.67
398	402	2.288518	GGTTTGCCGTGCCTAAAAATCA	60.289	45.455	0.00	0.00	0.00	2.57
418	422	6.907206	ATAATTTGCCATGAAAATGTTCGG	57.093	33.333	0.00	0.00	36.46	4.30
423	427	9.852481	CAACGAATATAATTTGCCATGAAAATG	57.148	29.630	0.00	0.00	0.00	2.32
445	450	9.199184	CGTCAACTAAATTTATCATTCTCAACG	57.801	33.333	0.00	0.00	0.00	4.10
452	457	8.184192	CCTTGCTCGTCAACTAAATTTATCATT	58.816	33.333	0.00	0.00	0.00	2.57
454	459	6.403200	GCCTTGCTCGTCAACTAAATTTATCA	60.403	38.462	0.00	0.00	0.00	2.15
455	460	5.965918	GCCTTGCTCGTCAACTAAATTTATC	59.034	40.000	0.00	0.00	0.00	1.75
457	462	4.757657	TGCCTTGCTCGTCAACTAAATTTA	59.242	37.500	0.00	0.00	0.00	1.40
460	465	2.778299	TGCCTTGCTCGTCAACTAAAT	58.222	42.857	0.00	0.00	0.00	1.40
529	721	5.047802	CCCAAAGAACACTTGAGCATGTATT	60.048	40.000	0.00	0.00	0.00	1.89
601	793	1.531149	CGACGAGAACAAGCCAACAAT	59.469	47.619	0.00	0.00	0.00	2.71
610	802	0.110956	CGACGAGACGACGAGAACAA	60.111	55.000	0.00	0.00	46.01	2.83
668	860	0.749454	ATGAGAAATGGAGCACCGCC	60.749	55.000	0.00	0.00	39.42	6.13
679	871	4.036971	CGAGGAGGTTACGAGATGAGAAAT	59.963	45.833	0.00	0.00	0.00	2.17
736	928	4.070716	GCGCTAGGAGTAGTAGGATAACA	58.929	47.826	0.00	0.00	0.00	2.41
757	949	2.699809	CGCACTCAGCTTGATCGC	59.300	61.111	0.00	0.00	42.61	4.58
792	984	1.724582	CCGGCGTTCATGGGGAAATC	61.725	60.000	6.01	0.00	37.23	2.17
863	1055	0.679505	TGGCTTTCGATATCTCCCCG	59.320	55.000	0.34	0.00	0.00	5.73
866	1058	3.615351	GCTAGGTGGCTTTCGATATCTCC	60.615	52.174	0.34	0.00	0.00	3.71
912	1104	4.999950	AGAAGATGGATTATTGATCACGGC	59.000	41.667	0.00	0.00	36.43	5.68
936	1128	9.469807	GCTCGCTAGAATGTGCTTTATATATAT	57.530	33.333	0.00	0.00	0.00	0.86
959	1154	6.007936	TCTGAAGATCGAATTAGCTAGCTC	57.992	41.667	23.26	6.02	0.00	4.09
1030	1227	2.764128	GGCGATGACCAGGAGGGA	60.764	66.667	0.00	0.00	41.15	4.20
1031	1228	4.227134	CGGCGATGACCAGGAGGG	62.227	72.222	0.00	0.00	44.81	4.30
1032	1229	4.899239	GCGGCGATGACCAGGAGG	62.899	72.222	12.98	0.00	42.21	4.30
1098	1295	2.743928	GTGAGCTGGCCGGTCTTG	60.744	66.667	21.49	0.64	40.75	3.02
1122	1322	3.179339	TCCTTGTTCCGGCCCCAA	61.179	61.111	0.00	0.00	0.00	4.12
1656	1889	3.071459	CTCGATGAACGCCGTGCAC	62.071	63.158	0.00	6.82	42.26	4.57
1714	1959	1.758514	TGAGGCCGAGGTGGATCTC	60.759	63.158	0.00	0.00	42.00	2.75
1933	2183	0.613012	GTTTGCCAAGGGAGGAGCAT	60.613	55.000	0.00	0.00	34.72	3.79
2020	2270	3.236816	CCTTTATTCTTGCAAGCACACG	58.763	45.455	21.99	7.85	0.00	4.49
2059	2311	8.934023	AACCTCTAAAATGAACTGTTTATCCA	57.066	30.769	0.00	0.00	0.00	3.41
2171	2423	3.016031	TGATTATTGATTGCACGCACCT	58.984	40.909	0.00	0.00	0.00	4.00
2193	2445	4.162509	GGCTGTTGAAGATACTCTAAGGGT	59.837	45.833	0.00	0.00	0.00	4.34
2203	2455	3.345737	CGCGAGGCTGTTGAAGATA	57.654	52.632	0.00	0.00	0.00	1.98
2234	2486	3.526534	TCATTCCGATGATGTAAACGCA	58.473	40.909	0.00	0.00	37.37	5.24
2254	2506	2.577911	GCCGCGCAAAAGCTCATC	60.578	61.111	8.75	0.00	34.40	2.92
2260	2513	2.202222	CTCTTCGCCGCGCAAAAG	60.202	61.111	8.75	7.13	0.00	2.27
2287	2540	1.102978	ATAATTTGCCGTGGCCACTC	58.897	50.000	32.28	23.25	41.09	3.51
2290	2543	1.028905	GCTATAATTTGCCGTGGCCA	58.971	50.000	0.00	0.00	41.09	5.36
2297	2551	1.329292	TCGCGTGTGCTATAATTTGCC	59.671	47.619	5.77	0.00	39.65	4.52
2496	2759	7.696035	GCATCATGATTTGTATGTTTGACGTTA	59.304	33.333	5.16	0.00	0.00	3.18
2500	2763	7.478322	AGAGCATCATGATTTGTATGTTTGAC	58.522	34.615	5.16	0.00	37.82	3.18
2561	2824	6.660800	ACACATGATGATCTTCAGAAGGATT	58.339	36.000	15.64	0.00	0.00	3.01
2679	2943	5.046878	TGGCCAAGATTTAGACTACTTTCGA	60.047	40.000	0.61	0.00	0.00	3.71
2683	2947	4.504858	CGTGGCCAAGATTTAGACTACTT	58.495	43.478	14.14	0.00	0.00	2.24
2726	2990	1.128507	ACGCTTGTGTGATTATGCACG	59.871	47.619	0.00	0.00	41.63	5.34
2733	2997	1.237533	TCATGCACGCTTGTGTGATT	58.762	45.000	17.16	1.77	45.65	2.57
2754	3018	3.368739	GGGATCAAAAGATGCTTTGGTGG	60.369	47.826	0.00	0.00	37.00	4.61
2755	3019	3.258872	TGGGATCAAAAGATGCTTTGGTG	59.741	43.478	0.00	0.00	37.00	4.17
2790	3056	3.507233	GCCCAATTTGTCATTGTGAGAGA	59.493	43.478	0.00	0.00	0.00	3.10

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.