Multiple sequence alignment - TraesCS5A01G318400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G318400 chr5A 100.000 4631 0 0 1 4631 529083202 529087832 0.000000e+00 8552.0
1 TraesCS5A01G318400 chr5A 84.031 1146 97 46 2540 3649 657380658 657381753 0.000000e+00 1024.0
2 TraesCS5A01G318400 chr5A 84.062 778 72 25 1756 2514 657379655 657380399 0.000000e+00 702.0
3 TraesCS5A01G318400 chr5A 92.537 134 7 3 999 1129 657378658 657378791 6.120000e-44 189.0
4 TraesCS5A01G318400 chr5D 95.725 1310 33 6 2521 3828 416414577 416415865 0.000000e+00 2087.0
5 TraesCS5A01G318400 chr5D 88.003 1542 103 31 268 1751 416411661 416413178 0.000000e+00 1748.0
6 TraesCS5A01G318400 chr5D 96.234 770 28 1 1755 2524 416413401 416414169 0.000000e+00 1260.0
7 TraesCS5A01G318400 chr5D 85.256 997 83 30 2821 3771 529218344 529219322 0.000000e+00 968.0
8 TraesCS5A01G318400 chr5D 86.979 768 77 14 1755 2508 529216658 529217416 0.000000e+00 843.0
9 TraesCS5A01G318400 chr5D 85.816 564 44 12 4051 4599 416415942 416416484 2.420000e-157 566.0
10 TraesCS5A01G318400 chr5D 91.698 265 22 0 1 265 416411277 416411541 7.320000e-98 368.0
11 TraesCS5A01G318400 chr5D 95.732 164 7 0 3889 4052 517855173 517855010 9.880000e-67 265.0
12 TraesCS5A01G318400 chr5D 77.666 497 54 38 999 1478 529215469 529215925 2.770000e-62 250.0
13 TraesCS5A01G318400 chr5B 94.950 1307 48 3 2521 3819 503215571 503216867 0.000000e+00 2032.0
14 TraesCS5A01G318400 chr5B 90.214 981 62 11 778 1751 503213236 503214189 0.000000e+00 1249.0
15 TraesCS5A01G318400 chr5B 95.850 771 28 2 1755 2525 503214412 503215178 0.000000e+00 1243.0
16 TraesCS5A01G318400 chr5B 84.940 996 89 32 2821 3771 667675376 667676355 0.000000e+00 952.0
17 TraesCS5A01G318400 chr5B 87.891 768 70 15 1755 2508 667673615 667674373 0.000000e+00 881.0
18 TraesCS5A01G318400 chr5B 85.065 462 29 10 4051 4496 503216979 503217416 7.120000e-118 435.0
19 TraesCS5A01G318400 chr5B 88.961 308 28 5 2521 2825 667674901 667675205 4.370000e-100 375.0
20 TraesCS5A01G318400 chr5B 76.829 492 55 39 999 1471 667672240 667672691 6.030000e-54 222.0
21 TraesCS5A01G318400 chr5B 96.629 89 3 0 688 776 503212751 503212839 1.040000e-31 148.0
22 TraesCS5A01G318400 chr5B 92.537 67 5 0 4486 4552 503217424 503217490 3.810000e-16 97.1
23 TraesCS5A01G318400 chr5B 94.595 37 2 0 3857 3893 503216945 503216981 1.800000e-04 58.4
24 TraesCS5A01G318400 chrUn 96.296 162 6 0 3891 4052 31220657 31220496 2.750000e-67 267.0
25 TraesCS5A01G318400 chr6A 94.675 169 9 0 3884 4052 20022163 20021995 3.550000e-66 263.0
26 TraesCS5A01G318400 chr3D 95.181 166 8 0 3890 4055 238999413 238999578 3.550000e-66 263.0
27 TraesCS5A01G318400 chr2B 93.220 177 10 2 3878 4053 291855181 291855006 4.600000e-65 259.0
28 TraesCS5A01G318400 chr2D 93.143 175 11 1 3890 4063 56541157 56540983 5.950000e-64 255.0
29 TraesCS5A01G318400 chr2D 92.614 176 13 0 3879 4054 420523849 420523674 2.140000e-63 254.0
30 TraesCS5A01G318400 chr2D 92.222 180 13 1 3874 4053 521564015 521564193 2.140000e-63 254.0
31 TraesCS5A01G318400 chr6B 88.660 194 19 3 3866 4057 679279893 679279701 2.790000e-57 233.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G318400 chr5A 529083202 529087832 4630 False 8552.000000 8552 100.000000 1 4631 1 chr5A.!!$F1 4630
1 TraesCS5A01G318400 chr5A 657378658 657381753 3095 False 638.333333 1024 86.876667 999 3649 3 chr5A.!!$F2 2650
2 TraesCS5A01G318400 chr5D 416411277 416416484 5207 False 1205.800000 2087 91.495200 1 4599 5 chr5D.!!$F1 4598
3 TraesCS5A01G318400 chr5D 529215469 529219322 3853 False 687.000000 968 83.300333 999 3771 3 chr5D.!!$F2 2772
4 TraesCS5A01G318400 chr5B 503212751 503217490 4739 False 751.785714 2032 92.834286 688 4552 7 chr5B.!!$F1 3864
5 TraesCS5A01G318400 chr5B 667672240 667676355 4115 False 607.500000 952 84.655250 999 3771 4 chr5B.!!$F2 2772

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
102 103 0.037303 CCTCCATCAGCACCAACTGT 59.963 55.0 0.00 0.0 38.84 3.55 F
155 156 0.038166 TGGTTCTTCCTCATGTGCCC 59.962 55.0 0.00 0.0 37.07 5.36 F
623 741 0.111253 GGCCATAATGGACCTGAGGG 59.889 60.0 2.38 0.0 40.64 4.30 F
627 745 0.469917 ATAATGGACCTGAGGGCACG 59.530 55.0 6.70 0.0 35.63 5.34 F
2144 3455 0.659957 GAGCTTAGCTGCCCATTTCG 59.340 55.0 13.01 0.0 39.88 3.46 F
2761 4667 0.252239 GCCATTTCCCCCAGGTCTTT 60.252 55.0 0.00 0.0 0.00 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1752 2815 0.447801 CAGGTTGTAATGCTGACCGC 59.552 55.000 0.00 0.0 37.26 5.68 R
1910 3216 1.520494 CATCAGGGCTTCCATCATCG 58.480 55.000 0.00 0.0 0.00 3.84 R
2597 4491 3.687212 TCACTGCCACACAATTATAACCG 59.313 43.478 0.00 0.0 0.00 4.44 R
2636 4530 1.915228 GGAGGCAGCCATAAGACCA 59.085 57.895 15.80 0.0 0.00 4.02 R
2973 5069 0.320374 CACCAAACCTCGCTGGAGTA 59.680 55.000 1.32 0.0 38.70 2.59 R
4580 6811 0.846693 AGAGGCTCTTGGTTGGTTGT 59.153 50.000 12.24 0.0 0.00 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 5.836347 TGATGTTCGTGATAAGATCTCTGG 58.164 41.667 0.00 0.00 32.00 3.86
54 55 8.106247 TCTGGAACTTGTGATAAATACAAACC 57.894 34.615 0.00 0.00 37.56 3.27
73 74 3.326747 ACCAAAGTATGTGAGAGTTCGC 58.673 45.455 0.00 0.00 0.00 4.70
102 103 0.037303 CCTCCATCAGCACCAACTGT 59.963 55.000 0.00 0.00 38.84 3.55
155 156 0.038166 TGGTTCTTCCTCATGTGCCC 59.962 55.000 0.00 0.00 37.07 5.36
159 160 0.776810 TCTTCCTCATGTGCCCCAAA 59.223 50.000 0.00 0.00 0.00 3.28
183 184 5.046014 ACTCTTCAATAGGAGCATCAACACT 60.046 40.000 0.00 0.00 36.25 3.55
193 194 1.401530 CATCAACACTTGTGCTTGCG 58.598 50.000 0.10 0.00 0.00 4.85
195 196 1.299316 CAACACTTGTGCTTGCGGG 60.299 57.895 0.10 0.00 0.00 6.13
212 213 1.683418 GGGTGGTAGGGAGTTAGCGG 61.683 65.000 0.00 0.00 0.00 5.52
215 216 1.134877 GTGGTAGGGAGTTAGCGGAAC 60.135 57.143 0.00 0.00 38.44 3.62
218 219 1.823610 GTAGGGAGTTAGCGGAACACT 59.176 52.381 7.21 5.04 40.86 3.55
226 227 2.812011 GTTAGCGGAACACTCCAACAAT 59.188 45.455 0.21 0.00 42.58 2.71
229 230 1.069227 GCGGAACACTCCAACAATGAC 60.069 52.381 0.00 0.00 42.58 3.06
232 233 3.253188 CGGAACACTCCAACAATGACAAT 59.747 43.478 0.00 0.00 42.58 2.71
259 260 3.617531 GCTTCAATGAAGAGGACGAGGAA 60.618 47.826 25.54 0.00 41.71 3.36
265 266 3.231818 TGAAGAGGACGAGGAAGACTTT 58.768 45.455 0.00 0.00 0.00 2.66
309 427 3.922171 AAGATGGGAACTAGCCAGAAG 57.078 47.619 0.00 0.00 0.00 2.85
332 450 5.362430 AGAAGAGCCCAACACATTACAAAAA 59.638 36.000 0.00 0.00 0.00 1.94
370 488 3.837213 AACATTGCCATTCACGAAGAG 57.163 42.857 0.00 0.00 0.00 2.85
381 499 2.605257 TCACGAAGAGGAAAAGGGAGA 58.395 47.619 0.00 0.00 0.00 3.71
382 500 3.173965 TCACGAAGAGGAAAAGGGAGAT 58.826 45.455 0.00 0.00 0.00 2.75
500 618 9.651913 TTAAAGGATTGAATGTTTTAATGAGGC 57.348 29.630 0.00 0.00 0.00 4.70
509 627 6.992063 ATGTTTTAATGAGGCAGTCACTAG 57.008 37.500 0.00 0.00 38.28 2.57
536 654 8.986477 AAAGCTCAAAATTTATACCACATGAC 57.014 30.769 0.00 0.00 0.00 3.06
581 699 8.450180 TCCTTTTTCTGCATTTTTCAGTTTTTC 58.550 29.630 0.00 0.00 33.48 2.29
583 701 7.920160 TTTTCTGCATTTTTCAGTTTTTCCT 57.080 28.000 0.00 0.00 33.48 3.36
584 702 9.442047 TTTTTCTGCATTTTTCAGTTTTTCCTA 57.558 25.926 0.00 0.00 33.48 2.94
585 703 9.612066 TTTTCTGCATTTTTCAGTTTTTCCTAT 57.388 25.926 0.00 0.00 33.48 2.57
615 733 4.141287 CGAAGTATTTGGGCCATAATGGA 58.859 43.478 7.26 0.00 40.96 3.41
623 741 0.111253 GGCCATAATGGACCTGAGGG 59.889 60.000 2.38 0.00 40.64 4.30
624 742 0.538287 GCCATAATGGACCTGAGGGC 60.538 60.000 2.38 0.00 40.96 5.19
625 743 0.846015 CCATAATGGACCTGAGGGCA 59.154 55.000 6.70 0.00 40.96 5.36
626 744 1.477558 CCATAATGGACCTGAGGGCAC 60.478 57.143 6.70 0.00 40.96 5.01
627 745 0.469917 ATAATGGACCTGAGGGCACG 59.530 55.000 6.70 0.00 35.63 5.34
650 782 3.202906 GCCCGCTCACTTATAAACATGA 58.797 45.455 0.00 0.00 0.00 3.07
654 786 5.692204 CCCGCTCACTTATAAACATGACTAG 59.308 44.000 0.00 0.00 0.00 2.57
662 794 2.869503 AAACATGACTAGGCGGGCCG 62.870 60.000 24.35 24.35 41.95 6.13
681 813 3.683937 GCCGTGCCTGCCATGTTT 61.684 61.111 0.00 0.00 0.00 2.83
682 814 2.339556 GCCGTGCCTGCCATGTTTA 61.340 57.895 0.00 0.00 0.00 2.01
683 815 1.506262 CCGTGCCTGCCATGTTTAC 59.494 57.895 0.00 0.00 0.00 2.01
726 861 1.618343 CCAATTGGTCAGGTTTGGGTC 59.382 52.381 16.90 0.00 35.93 4.46
813 1343 3.462678 GGACCTCCACTCTCCCGC 61.463 72.222 0.00 0.00 35.64 6.13
815 1345 4.316823 ACCTCCACTCTCCCGCCA 62.317 66.667 0.00 0.00 0.00 5.69
844 1384 3.069318 GTCGTCCTCCGCCTTCCT 61.069 66.667 0.00 0.00 36.19 3.36
853 1393 3.710722 CGCCTTCCTCCCTGCACT 61.711 66.667 0.00 0.00 0.00 4.40
1080 1627 1.731613 CAACGAGCGCCTCAACGTA 60.732 57.895 2.29 0.00 38.00 3.57
1083 1630 2.126071 GAGCGCCTCAACGTAGCA 60.126 61.111 2.29 0.00 34.88 3.49
1184 1753 2.579860 TCTTCTACTTCTCCCGGTAGGT 59.420 50.000 0.00 0.00 36.86 3.08
1185 1754 3.782523 TCTTCTACTTCTCCCGGTAGGTA 59.217 47.826 0.00 0.00 36.86 3.08
1186 1755 3.567478 TCTACTTCTCCCGGTAGGTAC 57.433 52.381 0.00 0.00 36.86 3.34
1246 1815 5.140454 TCGTGATCCAGAATTCCAGATAGA 58.860 41.667 0.65 3.41 0.00 1.98
1257 1826 6.268847 AGAATTCCAGATAGATTTAGAGCCGT 59.731 38.462 0.65 0.00 0.00 5.68
1276 1845 2.412847 CGTCTCAGATTTTCCGGTTTGC 60.413 50.000 0.00 0.00 0.00 3.68
1289 1858 2.556622 CCGGTTTGCAGATAAACTTGGT 59.443 45.455 0.00 0.00 39.78 3.67
1321 1896 7.867403 ACAGCAATCGAAATCTTTGTTTACAAT 59.133 29.630 0.00 0.00 35.55 2.71
1323 1898 8.702438 AGCAATCGAAATCTTTGTTTACAATTG 58.298 29.630 3.24 3.24 35.55 2.32
1360 1936 3.593328 TGGGATTCTCCAATTCTCCACTT 59.407 43.478 0.00 0.00 38.64 3.16
1462 2062 2.612672 CTCATCATGTGTAGCTGCCAAG 59.387 50.000 0.00 0.00 0.00 3.61
1478 2078 1.004918 AAGTGCTAGTGGTGCCGTC 60.005 57.895 0.00 0.00 0.00 4.79
1513 2389 2.076863 GAATTCAGTCCCTGTTGTCCG 58.923 52.381 0.00 0.00 32.61 4.79
1560 2436 3.205784 AGGACATAGATCAAGCAAGGC 57.794 47.619 0.00 0.00 0.00 4.35
1576 2452 1.040893 AGGCGACCGTGTCATATGGA 61.041 55.000 2.13 0.00 38.91 3.41
1651 2713 7.921786 TTTCCAGAGTTATCCAAAGTATGTG 57.078 36.000 0.00 0.00 0.00 3.21
1737 2800 4.077300 TGACCTTCATCATAGTGCATCC 57.923 45.455 0.00 0.00 0.00 3.51
1751 2814 2.094545 GTGCATCCTTGGCTAGTTTTGG 60.095 50.000 0.00 0.00 0.00 3.28
1752 2815 1.478105 GCATCCTTGGCTAGTTTTGGG 59.522 52.381 0.00 0.00 0.00 4.12
1805 3100 7.535940 GCTTCTGTGTACTCATATTATCTCGTC 59.464 40.741 0.00 0.00 0.00 4.20
1847 3142 1.559368 AATGGCAAGGCTGTTGCATA 58.441 45.000 20.96 12.39 46.58 3.14
1910 3216 9.226345 GATTCCAAGTTCGAAATCATTATTGTC 57.774 33.333 0.00 0.00 0.00 3.18
2065 3371 6.825213 GGGTTTCGGTTATTTATGACTTACCT 59.175 38.462 0.00 0.00 0.00 3.08
2067 3373 7.254218 GGTTTCGGTTATTTATGACTTACCTCG 60.254 40.741 0.00 0.00 0.00 4.63
2144 3455 0.659957 GAGCTTAGCTGCCCATTTCG 59.340 55.000 13.01 0.00 39.88 3.46
2182 3493 6.017852 TGTTATGCTTGATGTTCGTGTTAACA 60.018 34.615 3.59 3.59 43.16 2.41
2187 3498 5.741982 GCTTGATGTTCGTGTTAACAAACTT 59.258 36.000 19.02 14.57 42.33 2.66
2325 3636 9.733556 TTCTCTCTGTTATTTGGCATAGTTAAA 57.266 29.630 0.00 0.00 0.00 1.52
2413 3724 1.538047 TTGCCAAGCTTCATCAGGTC 58.462 50.000 0.00 0.00 30.69 3.85
2429 3740 8.120140 TCATCAGGTCAGAATCATATACTCAG 57.880 38.462 0.00 0.00 0.00 3.35
2533 4427 1.297664 CCTATTCTCTGCTGCTGCAC 58.702 55.000 14.93 0.00 45.31 4.57
2597 4491 7.043325 CGTGTGCTTTGTTTCTAGATAGATACC 60.043 40.741 0.00 0.00 34.63 2.73
2636 4530 4.082354 GCAGTGATGAGAAATTGAAAGGCT 60.082 41.667 0.00 0.00 0.00 4.58
2644 4538 6.248433 TGAGAAATTGAAAGGCTGGTCTTAT 58.752 36.000 0.00 0.00 0.00 1.73
2655 4549 1.227674 GGTCTTATGGCTGCCTCCG 60.228 63.158 21.03 5.91 0.00 4.63
2760 4666 1.149133 AGCCATTTCCCCCAGGTCTT 61.149 55.000 0.00 0.00 0.00 3.01
2761 4667 0.252239 GCCATTTCCCCCAGGTCTTT 60.252 55.000 0.00 0.00 0.00 2.52
2762 4668 1.006639 GCCATTTCCCCCAGGTCTTTA 59.993 52.381 0.00 0.00 0.00 1.85
2763 4669 2.735151 CCATTTCCCCCAGGTCTTTAC 58.265 52.381 0.00 0.00 0.00 2.01
2764 4670 2.042433 CCATTTCCCCCAGGTCTTTACA 59.958 50.000 0.00 0.00 0.00 2.41
2765 4671 3.356290 CATTTCCCCCAGGTCTTTACAG 58.644 50.000 0.00 0.00 0.00 2.74
2766 4672 2.426431 TTCCCCCAGGTCTTTACAGA 57.574 50.000 0.00 0.00 0.00 3.41
2767 4673 1.952621 TCCCCCAGGTCTTTACAGAG 58.047 55.000 0.00 0.00 0.00 3.35
2768 4674 0.912486 CCCCCAGGTCTTTACAGAGG 59.088 60.000 0.00 0.00 0.00 3.69
2769 4675 0.253327 CCCCAGGTCTTTACAGAGGC 59.747 60.000 0.00 0.00 0.00 4.70
2770 4676 1.280457 CCCAGGTCTTTACAGAGGCT 58.720 55.000 0.00 0.00 0.00 4.58
2771 4677 1.065854 CCCAGGTCTTTACAGAGGCTG 60.066 57.143 0.00 0.00 37.52 4.85
2772 4678 1.902508 CCAGGTCTTTACAGAGGCTGA 59.097 52.381 0.00 0.00 35.18 4.26
2848 4940 5.756195 TCTGTTCTGTTTTGATTGGTCTG 57.244 39.130 0.00 0.00 0.00 3.51
2873 4965 8.514594 TGTTCTCTTTGGCAAAATATGTCTTAG 58.485 33.333 14.43 0.00 33.68 2.18
2946 5042 8.197439 CCAAGTCATAGATATGTACTTGTGTGA 58.803 37.037 24.33 0.00 42.36 3.58
2973 5069 7.500141 AGTTGTTTGATTTAATGGCTGAAACT 58.500 30.769 0.00 0.00 0.00 2.66
2977 5073 8.296713 TGTTTGATTTAATGGCTGAAACTACTC 58.703 33.333 0.00 0.00 0.00 2.59
2984 5080 1.634702 GCTGAAACTACTCCAGCGAG 58.365 55.000 0.00 0.00 42.92 5.03
2998 5094 1.067142 CAGCGAGGTTTGGTGTAGCTA 60.067 52.381 0.00 0.00 31.75 3.32
3174 5270 4.196193 TGGTTGGAATCTTATGCGTAAGG 58.804 43.478 22.52 7.20 38.27 2.69
3264 5360 5.063564 GGATCGTTTAGGTGTGTCTCATTTC 59.936 44.000 0.00 0.00 0.00 2.17
3300 5401 9.136323 AGAACAAGCCCCTTATAATTTCTATTG 57.864 33.333 0.00 0.00 0.00 1.90
3552 5665 3.672767 ATAACTTTCGTCGACAGGGTT 57.327 42.857 17.16 15.39 0.00 4.11
3586 5699 4.487714 AAGCTCGGTGGATCTGAAATTA 57.512 40.909 0.00 0.00 0.00 1.40
3786 5927 1.317613 GTGTGGCATCTTGTGTTCCA 58.682 50.000 0.00 0.00 0.00 3.53
3828 6000 2.553247 GCTTGCTACCTTGGGAGAACTT 60.553 50.000 2.48 0.00 0.00 2.66
3829 6001 2.859165 TGCTACCTTGGGAGAACTTG 57.141 50.000 2.48 0.00 0.00 3.16
3830 6002 2.054799 TGCTACCTTGGGAGAACTTGT 58.945 47.619 2.48 0.00 0.00 3.16
3831 6003 2.224523 TGCTACCTTGGGAGAACTTGTG 60.225 50.000 2.48 0.00 0.00 3.33
3832 6004 2.224548 GCTACCTTGGGAGAACTTGTGT 60.225 50.000 2.48 0.00 0.00 3.72
3835 6007 2.775384 ACCTTGGGAGAACTTGTGTACA 59.225 45.455 0.00 0.00 0.00 2.90
3836 6008 3.394606 ACCTTGGGAGAACTTGTGTACAT 59.605 43.478 0.00 0.00 0.00 2.29
3837 6009 4.595781 ACCTTGGGAGAACTTGTGTACATA 59.404 41.667 0.00 0.00 0.00 2.29
3839 6011 5.643777 CCTTGGGAGAACTTGTGTACATAAG 59.356 44.000 25.57 25.57 35.91 1.73
3842 6014 5.046591 TGGGAGAACTTGTGTACATAAGAGG 60.047 44.000 31.62 12.64 34.24 3.69
3843 6015 5.187186 GGGAGAACTTGTGTACATAAGAGGA 59.813 44.000 31.62 0.36 34.24 3.71
3845 6017 7.159372 GGAGAACTTGTGTACATAAGAGGAAA 58.841 38.462 31.62 0.00 34.24 3.13
3847 6019 9.220767 GAGAACTTGTGTACATAAGAGGAAAAT 57.779 33.333 31.62 10.60 34.24 1.82
3894 6080 8.773762 GCAGTTATCATGCAAGTAAAATACTC 57.226 34.615 0.00 0.00 43.31 2.59
3895 6081 7.857885 GCAGTTATCATGCAAGTAAAATACTCC 59.142 37.037 0.00 0.00 43.31 3.85
3896 6082 8.345565 CAGTTATCATGCAAGTAAAATACTCCC 58.654 37.037 0.00 0.00 38.26 4.30
3897 6083 8.275040 AGTTATCATGCAAGTAAAATACTCCCT 58.725 33.333 0.00 0.00 38.26 4.20
3898 6084 8.560374 GTTATCATGCAAGTAAAATACTCCCTC 58.440 37.037 0.00 0.00 38.26 4.30
3899 6085 5.437060 TCATGCAAGTAAAATACTCCCTCC 58.563 41.667 0.00 0.00 38.26 4.30
3900 6086 4.919774 TGCAAGTAAAATACTCCCTCCA 57.080 40.909 0.00 0.00 38.26 3.86
3901 6087 5.450818 TGCAAGTAAAATACTCCCTCCAT 57.549 39.130 0.00 0.00 38.26 3.41
3902 6088 5.826643 TGCAAGTAAAATACTCCCTCCATT 58.173 37.500 0.00 0.00 38.26 3.16
3903 6089 5.885912 TGCAAGTAAAATACTCCCTCCATTC 59.114 40.000 0.00 0.00 38.26 2.67
3904 6090 5.299531 GCAAGTAAAATACTCCCTCCATTCC 59.700 44.000 0.00 0.00 38.26 3.01
3905 6091 6.663734 CAAGTAAAATACTCCCTCCATTCCT 58.336 40.000 0.00 0.00 38.26 3.36
3906 6092 7.637301 GCAAGTAAAATACTCCCTCCATTCCTA 60.637 40.741 0.00 0.00 38.26 2.94
3907 6093 8.272173 CAAGTAAAATACTCCCTCCATTCCTAA 58.728 37.037 0.00 0.00 38.26 2.69
3908 6094 8.401955 AGTAAAATACTCCCTCCATTCCTAAA 57.598 34.615 0.00 0.00 32.47 1.85
3909 6095 9.015146 AGTAAAATACTCCCTCCATTCCTAAAT 57.985 33.333 0.00 0.00 32.47 1.40
3915 6101 9.860393 ATACTCCCTCCATTCCTAAATATAAGT 57.140 33.333 0.00 0.00 0.00 2.24
3916 6102 8.208575 ACTCCCTCCATTCCTAAATATAAGTC 57.791 38.462 0.00 0.00 0.00 3.01
3917 6103 8.019652 ACTCCCTCCATTCCTAAATATAAGTCT 58.980 37.037 0.00 0.00 0.00 3.24
3918 6104 8.814448 TCCCTCCATTCCTAAATATAAGTCTT 57.186 34.615 0.00 0.00 0.00 3.01
3919 6105 9.237706 TCCCTCCATTCCTAAATATAAGTCTTT 57.762 33.333 0.00 0.00 0.00 2.52
3920 6106 9.289782 CCCTCCATTCCTAAATATAAGTCTTTG 57.710 37.037 0.00 0.00 0.00 2.77
3921 6107 9.853177 CCTCCATTCCTAAATATAAGTCTTTGT 57.147 33.333 0.00 0.00 0.00 2.83
3948 6134 9.371136 AGATATTTTACTATGCATCACATACGG 57.629 33.333 0.19 0.00 40.38 4.02
3949 6135 9.366216 GATATTTTACTATGCATCACATACGGA 57.634 33.333 0.19 0.00 40.38 4.69
3950 6136 9.890629 ATATTTTACTATGCATCACATACGGAT 57.109 29.630 0.19 0.00 40.38 4.18
3951 6137 7.420184 TTTTACTATGCATCACATACGGATG 57.580 36.000 5.94 5.94 43.89 3.51
3953 6139 5.722021 ACTATGCATCACATACGGATGTA 57.278 39.130 14.23 2.23 44.82 2.29
3954 6140 6.286240 ACTATGCATCACATACGGATGTAT 57.714 37.500 14.23 9.85 44.82 2.29
3969 6155 7.658179 ACGGATGTATGTAGATGCATTTTAG 57.342 36.000 0.00 1.10 35.26 1.85
3970 6156 7.441836 ACGGATGTATGTAGATGCATTTTAGA 58.558 34.615 0.00 0.00 35.26 2.10
3971 6157 7.600375 ACGGATGTATGTAGATGCATTTTAGAG 59.400 37.037 0.00 0.00 35.26 2.43
3972 6158 7.600375 CGGATGTATGTAGATGCATTTTAGAGT 59.400 37.037 0.00 0.00 35.26 3.24
3973 6159 8.715998 GGATGTATGTAGATGCATTTTAGAGTG 58.284 37.037 0.00 0.00 35.26 3.51
3974 6160 9.265901 GATGTATGTAGATGCATTTTAGAGTGT 57.734 33.333 0.00 0.00 35.26 3.55
3976 6162 9.750125 TGTATGTAGATGCATTTTAGAGTGTAG 57.250 33.333 0.00 0.00 0.00 2.74
3977 6163 9.967346 GTATGTAGATGCATTTTAGAGTGTAGA 57.033 33.333 0.00 0.00 0.00 2.59
3980 6166 9.534565 TGTAGATGCATTTTAGAGTGTAGATTC 57.465 33.333 0.00 0.00 0.00 2.52
3981 6167 9.534565 GTAGATGCATTTTAGAGTGTAGATTCA 57.465 33.333 0.00 0.00 0.00 2.57
3982 6168 8.430801 AGATGCATTTTAGAGTGTAGATTCAC 57.569 34.615 0.00 0.00 38.46 3.18
3993 6179 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
3994 6180 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
3995 6181 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
3996 6182 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
3997 6183 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
3998 6184 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
3999 6185 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
4000 6186 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
4001 6187 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
4002 6188 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
4003 6189 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
4004 6190 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
4005 6191 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
4006 6192 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
4007 6193 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
4008 6194 5.601583 TTTTGCTCCGTATGTAGTCCATA 57.398 39.130 0.00 0.00 34.86 2.74
4009 6195 4.848562 TTGCTCCGTATGTAGTCCATAG 57.151 45.455 0.00 0.00 36.71 2.23
4010 6196 3.828921 TGCTCCGTATGTAGTCCATAGT 58.171 45.455 0.00 0.00 36.71 2.12
4011 6197 3.568430 TGCTCCGTATGTAGTCCATAGTG 59.432 47.826 0.00 0.00 36.71 2.74
4012 6198 3.819337 GCTCCGTATGTAGTCCATAGTGA 59.181 47.826 0.00 0.00 36.71 3.41
4013 6199 4.277672 GCTCCGTATGTAGTCCATAGTGAA 59.722 45.833 0.00 0.00 36.71 3.18
4014 6200 5.221185 GCTCCGTATGTAGTCCATAGTGAAA 60.221 44.000 0.00 0.00 36.71 2.69
4015 6201 6.516860 GCTCCGTATGTAGTCCATAGTGAAAT 60.517 42.308 0.00 0.00 36.71 2.17
4016 6202 7.309012 GCTCCGTATGTAGTCCATAGTGAAATA 60.309 40.741 0.00 0.00 36.71 1.40
4017 6203 8.645814 TCCGTATGTAGTCCATAGTGAAATAT 57.354 34.615 0.00 0.00 36.71 1.28
4018 6204 8.737175 TCCGTATGTAGTCCATAGTGAAATATC 58.263 37.037 0.00 0.00 36.71 1.63
4019 6205 8.740906 CCGTATGTAGTCCATAGTGAAATATCT 58.259 37.037 0.00 0.00 36.71 1.98
4045 6231 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
4046 6232 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
4047 6233 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
4048 6234 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
4049 6235 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
4050 6236 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
4051 6237 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
4052 6238 7.232330 ACTTATATTTAGGAACGGAGGGAGTAC 59.768 40.741 0.00 0.00 0.00 2.73
4061 6247 5.425630 GAACGGAGGGAGTACATAAACAAT 58.574 41.667 0.00 0.00 0.00 2.71
4123 6322 9.146984 TGTTTAATTTGAGTGTAGAATACTCCG 57.853 33.333 0.00 0.00 43.54 4.63
4128 6327 2.885894 GAGTGTAGAATACTCCGGGGAG 59.114 54.545 9.33 13.14 43.54 4.30
4133 6333 2.389715 AGAATACTCCGGGGAGAACAG 58.610 52.381 21.16 0.00 44.53 3.16
4187 6387 9.670719 GGAAATTCTCTTTTTCTAACTTCTGTG 57.329 33.333 0.00 0.00 34.29 3.66
4208 6408 3.888930 TGAAGCACCCAAAAGAAGTTAGG 59.111 43.478 0.00 0.00 0.00 2.69
4214 6414 3.826729 ACCCAAAAGAAGTTAGGATGCAC 59.173 43.478 0.00 0.00 0.00 4.57
4222 6422 4.826556 GAAGTTAGGATGCACTTCAGACT 58.173 43.478 11.16 0.00 45.64 3.24
4223 6423 4.899352 AGTTAGGATGCACTTCAGACTT 57.101 40.909 0.00 0.00 0.00 3.01
4224 6424 5.234466 AGTTAGGATGCACTTCAGACTTT 57.766 39.130 0.00 0.00 0.00 2.66
4255 6455 5.978919 AGTTGCACAATGACAATACAACAAG 59.021 36.000 0.00 0.00 38.64 3.16
4270 6470 3.877508 ACAACAAGTACCAGAGAGCAAAC 59.122 43.478 0.00 0.00 0.00 2.93
4271 6471 4.130118 CAACAAGTACCAGAGAGCAAACT 58.870 43.478 0.00 0.00 0.00 2.66
4290 6490 5.707066 AACTGGCCTAGAAATTCTGAGAT 57.293 39.130 3.32 0.00 0.00 2.75
4291 6491 5.033589 ACTGGCCTAGAAATTCTGAGATG 57.966 43.478 3.32 0.00 0.00 2.90
4339 6539 6.177310 TGACTAAGTTAAGCCCACAGTTAA 57.823 37.500 0.00 0.00 0.00 2.01
4342 6542 7.227910 TGACTAAGTTAAGCCCACAGTTAAAAG 59.772 37.037 0.00 0.00 0.00 2.27
4345 6545 7.597288 AAGTTAAGCCCACAGTTAAAAGAAT 57.403 32.000 0.00 0.00 0.00 2.40
4415 6628 4.630894 TTGCTTGGTTAATATGCGGAAG 57.369 40.909 0.00 0.00 0.00 3.46
4416 6629 3.616219 TGCTTGGTTAATATGCGGAAGT 58.384 40.909 0.00 0.00 0.00 3.01
4417 6630 3.625764 TGCTTGGTTAATATGCGGAAGTC 59.374 43.478 0.00 0.00 0.00 3.01
4418 6631 3.877508 GCTTGGTTAATATGCGGAAGTCT 59.122 43.478 0.00 0.00 0.00 3.24
4419 6632 4.260784 GCTTGGTTAATATGCGGAAGTCTG 60.261 45.833 0.00 0.00 0.00 3.51
4420 6633 3.804036 TGGTTAATATGCGGAAGTCTGG 58.196 45.455 0.00 0.00 0.00 3.86
4421 6634 3.452990 TGGTTAATATGCGGAAGTCTGGA 59.547 43.478 0.00 0.00 0.00 3.86
4422 6635 3.808174 GGTTAATATGCGGAAGTCTGGAC 59.192 47.826 0.00 0.00 0.00 4.02
4423 6636 2.225068 AATATGCGGAAGTCTGGACG 57.775 50.000 0.00 0.00 36.20 4.79
4424 6637 1.399714 ATATGCGGAAGTCTGGACGA 58.600 50.000 0.00 0.00 36.20 4.20
4425 6638 1.179152 TATGCGGAAGTCTGGACGAA 58.821 50.000 0.00 0.00 36.20 3.85
4448 6661 3.904717 ACCATTACAACACTCCCACAAA 58.095 40.909 0.00 0.00 0.00 2.83
4528 6759 2.961526 ACGCCGTTGAGATTGTCTAT 57.038 45.000 0.00 0.00 0.00 1.98
4532 6763 4.037565 ACGCCGTTGAGATTGTCTATGATA 59.962 41.667 0.00 0.00 0.00 2.15
4539 6770 9.201127 CGTTGAGATTGTCTATGATATGTCATT 57.799 33.333 10.46 0.00 42.37 2.57
4542 6773 9.485206 TGAGATTGTCTATGATATGTCATTGTG 57.515 33.333 10.46 2.49 42.37 3.33
4552 6783 8.975663 ATGATATGTCATTGTGATCACTTCTT 57.024 30.769 25.55 11.70 42.37 2.52
4556 6787 7.698506 ATGTCATTGTGATCACTTCTTCAAT 57.301 32.000 25.55 13.25 33.38 2.57
4574 6805 4.832248 TCAATAAGCAACTCCGACTTCAT 58.168 39.130 0.00 0.00 0.00 2.57
4576 6807 2.839486 AAGCAACTCCGACTTCATCA 57.161 45.000 0.00 0.00 0.00 3.07
4580 6811 2.677902 GCAACTCCGACTTCATCATGGA 60.678 50.000 0.00 0.00 0.00 3.41
4599 6830 0.846693 ACAACCAACCAAGAGCCTCT 59.153 50.000 0.00 0.00 0.00 3.69
4600 6831 1.242076 CAACCAACCAAGAGCCTCTG 58.758 55.000 0.00 0.00 0.00 3.35
4601 6832 0.846693 AACCAACCAAGAGCCTCTGT 59.153 50.000 0.00 0.00 0.00 3.41
4602 6833 0.398318 ACCAACCAAGAGCCTCTGTC 59.602 55.000 0.00 0.00 0.00 3.51
4603 6834 0.397941 CCAACCAAGAGCCTCTGTCA 59.602 55.000 0.00 0.00 0.00 3.58
4604 6835 1.004044 CCAACCAAGAGCCTCTGTCAT 59.996 52.381 0.00 0.00 0.00 3.06
4605 6836 2.354259 CAACCAAGAGCCTCTGTCATC 58.646 52.381 0.00 0.00 0.00 2.92
4606 6837 1.649321 ACCAAGAGCCTCTGTCATCA 58.351 50.000 0.00 0.00 0.00 3.07
4607 6838 2.194859 ACCAAGAGCCTCTGTCATCAT 58.805 47.619 0.00 0.00 0.00 2.45
4608 6839 2.170187 ACCAAGAGCCTCTGTCATCATC 59.830 50.000 0.00 0.00 0.00 2.92
4609 6840 2.169978 CCAAGAGCCTCTGTCATCATCA 59.830 50.000 0.00 0.00 0.00 3.07
4610 6841 3.181453 CCAAGAGCCTCTGTCATCATCAT 60.181 47.826 0.00 0.00 0.00 2.45
4611 6842 4.059511 CAAGAGCCTCTGTCATCATCATC 58.940 47.826 0.00 0.00 0.00 2.92
4612 6843 3.306613 AGAGCCTCTGTCATCATCATCA 58.693 45.455 0.00 0.00 0.00 3.07
4613 6844 3.069872 AGAGCCTCTGTCATCATCATCAC 59.930 47.826 0.00 0.00 0.00 3.06
4614 6845 3.039743 AGCCTCTGTCATCATCATCACT 58.960 45.455 0.00 0.00 0.00 3.41
4615 6846 3.455177 AGCCTCTGTCATCATCATCACTT 59.545 43.478 0.00 0.00 0.00 3.16
4616 6847 3.808726 GCCTCTGTCATCATCATCACTTC 59.191 47.826 0.00 0.00 0.00 3.01
4617 6848 4.443175 GCCTCTGTCATCATCATCACTTCT 60.443 45.833 0.00 0.00 0.00 2.85
4618 6849 5.291178 CCTCTGTCATCATCATCACTTCTC 58.709 45.833 0.00 0.00 0.00 2.87
4619 6850 5.273674 TCTGTCATCATCATCACTTCTCC 57.726 43.478 0.00 0.00 0.00 3.71
4620 6851 4.961099 TCTGTCATCATCATCACTTCTCCT 59.039 41.667 0.00 0.00 0.00 3.69
4621 6852 5.068855 TCTGTCATCATCATCACTTCTCCTC 59.931 44.000 0.00 0.00 0.00 3.71
4622 6853 4.100653 TGTCATCATCATCACTTCTCCTCC 59.899 45.833 0.00 0.00 0.00 4.30
4623 6854 4.100653 GTCATCATCATCACTTCTCCTCCA 59.899 45.833 0.00 0.00 0.00 3.86
4624 6855 4.718276 TCATCATCATCACTTCTCCTCCAA 59.282 41.667 0.00 0.00 0.00 3.53
4625 6856 4.478206 TCATCATCACTTCTCCTCCAAC 57.522 45.455 0.00 0.00 0.00 3.77
4626 6857 3.840078 TCATCATCACTTCTCCTCCAACA 59.160 43.478 0.00 0.00 0.00 3.33
4627 6858 4.286808 TCATCATCACTTCTCCTCCAACAA 59.713 41.667 0.00 0.00 0.00 2.83
4628 6859 4.277515 TCATCACTTCTCCTCCAACAAG 57.722 45.455 0.00 0.00 0.00 3.16
4629 6860 2.550830 TCACTTCTCCTCCAACAAGC 57.449 50.000 0.00 0.00 0.00 4.01
4630 6861 1.768275 TCACTTCTCCTCCAACAAGCA 59.232 47.619 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 6.096846 TCCAGAGATCTTATCACGAACATCAA 59.903 38.462 0.00 0.00 0.00 2.57
26 27 9.739276 TTTGTATTTATCACAAGTTCCAGAGAT 57.261 29.630 0.00 0.00 37.22 2.75
28 29 8.237267 GGTTTGTATTTATCACAAGTTCCAGAG 58.763 37.037 0.00 0.00 37.22 3.35
33 34 9.744468 ACTTTGGTTTGTATTTATCACAAGTTC 57.256 29.630 0.00 0.00 37.22 3.01
54 55 4.726021 GCATGCGAACTCTCACATACTTTG 60.726 45.833 0.00 0.00 0.00 2.77
64 65 0.093705 GTCGTTGCATGCGAACTCTC 59.906 55.000 22.12 6.86 40.19 3.20
73 74 1.012086 CTGATGGAGGTCGTTGCATG 58.988 55.000 0.00 0.00 0.00 4.06
127 128 9.066892 GCACATGAGGAAGAACCAAATATATTA 57.933 33.333 0.00 0.00 42.04 0.98
130 131 5.827797 GGCACATGAGGAAGAACCAAATATA 59.172 40.000 0.00 0.00 42.04 0.86
155 156 5.188434 TGATGCTCCTATTGAAGAGTTTGG 58.812 41.667 0.00 0.00 32.47 3.28
159 160 5.046014 AGTGTTGATGCTCCTATTGAAGAGT 60.046 40.000 0.00 0.00 32.47 3.24
183 184 1.599518 CTACCACCCGCAAGCACAA 60.600 57.895 0.00 0.00 0.00 3.33
193 194 1.683418 CCGCTAACTCCCTACCACCC 61.683 65.000 0.00 0.00 0.00 4.61
195 196 1.134877 GTTCCGCTAACTCCCTACCAC 60.135 57.143 0.00 0.00 35.05 4.16
212 213 4.977963 CACATTGTCATTGTTGGAGTGTTC 59.022 41.667 0.00 0.00 0.00 3.18
215 216 4.790878 CTCACATTGTCATTGTTGGAGTG 58.209 43.478 0.00 0.00 0.00 3.51
218 219 3.489355 AGCTCACATTGTCATTGTTGGA 58.511 40.909 0.00 0.00 0.00 3.53
226 227 5.065235 TCTTCATTGAAGCTCACATTGTCA 58.935 37.500 19.53 0.00 39.29 3.58
229 230 4.698780 TCCTCTTCATTGAAGCTCACATTG 59.301 41.667 19.53 0.00 39.29 2.82
232 233 3.668447 GTCCTCTTCATTGAAGCTCACA 58.332 45.455 19.53 3.50 39.29 3.58
285 403 3.782523 TCTGGCTAGTTCCCATCTTTCAT 59.217 43.478 0.00 0.00 0.00 2.57
291 409 3.452627 TCTTCTTCTGGCTAGTTCCCATC 59.547 47.826 0.00 0.00 0.00 3.51
309 427 4.846779 TTTGTAATGTGTTGGGCTCTTC 57.153 40.909 0.00 0.00 0.00 2.87
332 450 8.664798 GGCAATGTTTTTCTAGTTCTTTGTTTT 58.335 29.630 0.00 0.00 0.00 2.43
333 451 7.821846 TGGCAATGTTTTTCTAGTTCTTTGTTT 59.178 29.630 0.00 0.00 0.00 2.83
345 463 4.582701 TCGTGAATGGCAATGTTTTTCT 57.417 36.364 0.00 0.00 0.00 2.52
352 470 2.358957 TCCTCTTCGTGAATGGCAATG 58.641 47.619 0.00 0.00 0.00 2.82
353 471 2.787473 TCCTCTTCGTGAATGGCAAT 57.213 45.000 0.00 0.00 0.00 3.56
356 474 2.162408 CCTTTTCCTCTTCGTGAATGGC 59.838 50.000 0.00 0.00 0.00 4.40
421 539 9.004717 GCTCTAGGTTACAAGAGAAAAGAAAAT 57.995 33.333 15.25 0.00 41.51 1.82
422 540 7.170998 CGCTCTAGGTTACAAGAGAAAAGAAAA 59.829 37.037 15.25 0.00 41.51 2.29
423 541 6.645415 CGCTCTAGGTTACAAGAGAAAAGAAA 59.355 38.462 15.25 0.00 41.51 2.52
425 543 5.243283 ACGCTCTAGGTTACAAGAGAAAAGA 59.757 40.000 15.25 0.00 41.51 2.52
426 544 5.346281 CACGCTCTAGGTTACAAGAGAAAAG 59.654 44.000 15.25 7.46 41.51 2.27
433 551 1.204941 AGCCACGCTCTAGGTTACAAG 59.795 52.381 0.00 0.00 30.62 3.16
434 552 1.263356 AGCCACGCTCTAGGTTACAA 58.737 50.000 0.00 0.00 30.62 2.41
440 558 1.204941 AGTACAAAGCCACGCTCTAGG 59.795 52.381 0.00 0.00 38.25 3.02
441 559 2.164624 AGAGTACAAAGCCACGCTCTAG 59.835 50.000 0.00 0.00 38.25 2.43
483 601 5.769662 AGTGACTGCCTCATTAAAACATTCA 59.230 36.000 0.00 0.00 0.00 2.57
487 605 5.865085 ACTAGTGACTGCCTCATTAAAACA 58.135 37.500 0.00 0.00 0.00 2.83
493 611 4.223923 AGCTTTACTAGTGACTGCCTCATT 59.776 41.667 5.39 0.00 0.00 2.57
527 645 1.143684 AGAGGCAAAGTGTCATGTGGT 59.856 47.619 0.00 0.00 0.00 4.16
554 672 7.920160 AAACTGAAAAATGCAGAAAAAGGAA 57.080 28.000 0.00 0.00 36.86 3.36
556 674 7.697710 GGAAAAACTGAAAAATGCAGAAAAAGG 59.302 33.333 0.00 0.00 36.86 3.11
624 742 2.023414 TATAAGTGAGCGGGCCCGTG 62.023 60.000 42.53 19.61 42.09 4.94
625 743 1.332144 TTATAAGTGAGCGGGCCCGT 61.332 55.000 42.53 29.88 42.09 5.28
626 744 0.179067 TTTATAAGTGAGCGGGCCCG 60.179 55.000 40.26 40.26 43.09 6.13
627 745 1.306148 GTTTATAAGTGAGCGGGCCC 58.694 55.000 13.57 13.57 0.00 5.80
675 807 0.452618 CTGGCACACGCGTAAACATG 60.453 55.000 13.44 6.85 39.92 3.21
726 861 2.456119 CGGGCTAGCGAAACAGCAG 61.456 63.158 9.00 0.00 39.63 4.24
844 1384 2.224159 GGTGGAGGAAGTGCAGGGA 61.224 63.158 0.00 0.00 0.00 4.20
853 1393 4.508128 GATCGCGCGGTGGAGGAA 62.508 66.667 31.69 8.20 0.00 3.36
913 1453 0.753479 TCGCAGACAGGGGAGATCTC 60.753 60.000 14.75 14.75 0.00 2.75
916 1456 1.333636 CCTTCGCAGACAGGGGAGAT 61.334 60.000 0.00 0.00 38.02 2.75
964 1504 1.316266 CAGATCTCCCTCCCACCCT 59.684 63.158 0.00 0.00 0.00 4.34
1080 1627 2.130272 TGAGGTAGACGATGAGTGCT 57.870 50.000 0.00 0.00 0.00 4.40
1083 1630 4.527944 TGAAGATGAGGTAGACGATGAGT 58.472 43.478 0.00 0.00 0.00 3.41
1246 1815 5.119694 GGAAAATCTGAGACGGCTCTAAAT 58.880 41.667 21.24 7.31 41.84 1.40
1257 1826 2.813754 CTGCAAACCGGAAAATCTGAGA 59.186 45.455 9.46 0.00 0.00 3.27
1276 1845 4.377431 GCTGTCAACGACCAAGTTTATCTG 60.377 45.833 0.00 0.00 30.96 2.90
1289 1858 3.325870 AGATTTCGATTGCTGTCAACGA 58.674 40.909 0.00 0.00 35.55 3.85
1360 1936 4.153296 CGTGTTATACATTTGCACTGTGGA 59.847 41.667 10.21 3.40 0.00 4.02
1412 1998 3.131755 CAGCGATCATATCTCATGGCCTA 59.868 47.826 3.32 0.00 0.00 3.93
1462 2062 1.738099 CTGACGGCACCACTAGCAC 60.738 63.158 0.00 0.00 0.00 4.40
1560 2436 4.323602 CGAAATATCCATATGACACGGTCG 59.676 45.833 3.65 3.12 34.95 4.79
1651 2713 1.160329 GCACACACTGACAGGACCAC 61.160 60.000 7.51 0.00 0.00 4.16
1699 2761 3.577415 AGGTCATCTAGGGTATAAACGGC 59.423 47.826 0.00 0.00 0.00 5.68
1701 2763 6.401047 TGAAGGTCATCTAGGGTATAAACG 57.599 41.667 0.00 0.00 0.00 3.60
1737 2800 0.893727 ACCGCCCAAAACTAGCCAAG 60.894 55.000 0.00 0.00 0.00 3.61
1751 2814 0.676782 AGGTTGTAATGCTGACCGCC 60.677 55.000 0.00 0.00 37.26 6.13
1752 2815 0.447801 CAGGTTGTAATGCTGACCGC 59.552 55.000 0.00 0.00 37.26 5.68
1847 3142 6.805713 AGTTGCAGCAAGTTTAGTAAAACAT 58.194 32.000 8.49 0.00 46.18 2.71
1910 3216 1.520494 CATCAGGGCTTCCATCATCG 58.480 55.000 0.00 0.00 0.00 3.84
2144 3455 7.263100 TCAAGCATAACATTCACCATATGTC 57.737 36.000 1.24 0.00 35.26 3.06
2233 3544 5.687166 TTATAACAACGAACTCCCCTGAT 57.313 39.130 0.00 0.00 0.00 2.90
2413 3724 8.604640 AAAGCATCACTGAGTATATGATTCTG 57.395 34.615 9.94 0.00 28.65 3.02
2429 3740 8.761575 TTTCTGGATAAATTCAAAAGCATCAC 57.238 30.769 0.00 0.00 0.00 3.06
2533 4427 3.779738 AGAGGATCCAAGAAAGAAGGAGG 59.220 47.826 15.82 0.00 34.40 4.30
2597 4491 3.687212 TCACTGCCACACAATTATAACCG 59.313 43.478 0.00 0.00 0.00 4.44
2636 4530 1.915228 GGAGGCAGCCATAAGACCA 59.085 57.895 15.80 0.00 0.00 4.02
2644 4538 3.695606 GTGTCTCGGAGGCAGCCA 61.696 66.667 13.47 0.00 25.72 4.75
2760 4666 0.253044 GCCCATGTCAGCCTCTGTAA 59.747 55.000 0.00 0.00 32.61 2.41
2761 4667 0.909133 TGCCCATGTCAGCCTCTGTA 60.909 55.000 0.00 0.00 32.61 2.74
2762 4668 2.226315 TGCCCATGTCAGCCTCTGT 61.226 57.895 0.00 0.00 32.61 3.41
2763 4669 1.748122 GTGCCCATGTCAGCCTCTG 60.748 63.158 0.00 0.00 0.00 3.35
2764 4670 1.922369 AGTGCCCATGTCAGCCTCT 60.922 57.895 0.00 0.00 0.00 3.69
2765 4671 1.748122 CAGTGCCCATGTCAGCCTC 60.748 63.158 0.00 0.00 0.00 4.70
2766 4672 2.226315 TCAGTGCCCATGTCAGCCT 61.226 57.895 0.00 0.00 0.00 4.58
2767 4673 2.042831 GTCAGTGCCCATGTCAGCC 61.043 63.158 0.00 0.00 0.00 4.85
2768 4674 1.302752 TGTCAGTGCCCATGTCAGC 60.303 57.895 0.00 0.00 0.00 4.26
2769 4675 0.035881 AGTGTCAGTGCCCATGTCAG 59.964 55.000 0.00 0.00 0.00 3.51
2770 4676 0.250424 CAGTGTCAGTGCCCATGTCA 60.250 55.000 0.00 0.00 0.00 3.58
2771 4677 1.580845 GCAGTGTCAGTGCCCATGTC 61.581 60.000 20.17 0.00 38.58 3.06
2772 4678 1.601759 GCAGTGTCAGTGCCCATGT 60.602 57.895 20.17 0.00 38.58 3.21
2841 4933 2.727123 TGCCAAAGAGAACAGACCAA 57.273 45.000 0.00 0.00 0.00 3.67
2848 4940 8.515414 ACTAAGACATATTTTGCCAAAGAGAAC 58.485 33.333 0.00 0.00 0.00 3.01
2873 4965 4.261197 CCTGACAAGAGCAAACTGGTTAAC 60.261 45.833 0.00 0.00 0.00 2.01
2946 5042 9.423061 GTTTCAGCCATTAAATCAAACAACTAT 57.577 29.630 0.00 0.00 0.00 2.12
2973 5069 0.320374 CACCAAACCTCGCTGGAGTA 59.680 55.000 1.32 0.00 38.70 2.59
2977 5073 1.298859 GCTACACCAAACCTCGCTGG 61.299 60.000 0.00 0.00 42.93 4.85
2984 5080 3.263261 GAGAGCTTAGCTACACCAAACC 58.737 50.000 6.75 0.00 39.88 3.27
3174 5270 1.605058 TTCGCTCCCCTGCTAGTCAC 61.605 60.000 0.00 0.00 0.00 3.67
3264 5360 5.470047 AGGGGCTTGTTCTATTCGTATAG 57.530 43.478 2.82 2.82 35.96 1.31
3300 5401 2.287393 AACCGGCAAAAGTGTCAAAC 57.713 45.000 0.00 0.00 0.00 2.93
3448 5549 6.146021 CAGCCTTACACAAATGAAAATGGAAC 59.854 38.462 0.00 0.00 0.00 3.62
3552 5665 2.289444 ACCGAGCTTTGAGATTCCGAAA 60.289 45.455 0.00 0.00 0.00 3.46
3586 5699 5.484998 ACACAAGGCCTTTCAAATATCCAAT 59.515 36.000 17.61 0.00 0.00 3.16
3786 5927 7.573843 GCAAGCAGTTGAGTAATTACAAGTCAT 60.574 37.037 17.65 0.00 35.46 3.06
3835 6007 9.692325 ATGCTCTTCTGTTTATTTTCCTCTTAT 57.308 29.630 0.00 0.00 0.00 1.73
3836 6008 9.520515 AATGCTCTTCTGTTTATTTTCCTCTTA 57.479 29.630 0.00 0.00 0.00 2.10
3837 6009 8.414629 AATGCTCTTCTGTTTATTTTCCTCTT 57.585 30.769 0.00 0.00 0.00 2.85
3839 6011 7.121907 AGGAATGCTCTTCTGTTTATTTTCCTC 59.878 37.037 0.00 0.00 35.51 3.71
3842 6014 9.481340 AAAAGGAATGCTCTTCTGTTTATTTTC 57.519 29.630 0.00 0.00 0.00 2.29
3843 6015 9.264719 CAAAAGGAATGCTCTTCTGTTTATTTT 57.735 29.630 0.00 0.00 0.00 1.82
3845 6017 6.870439 GCAAAAGGAATGCTCTTCTGTTTATT 59.130 34.615 0.00 0.00 40.64 1.40
3847 6019 5.301551 TGCAAAAGGAATGCTCTTCTGTTTA 59.698 36.000 0.00 0.00 44.14 2.01
3853 6025 3.930634 ACTGCAAAAGGAATGCTCTTC 57.069 42.857 0.00 0.00 44.14 2.87
3854 6026 5.477984 TGATAACTGCAAAAGGAATGCTCTT 59.522 36.000 0.00 0.00 44.14 2.85
3855 6027 5.012239 TGATAACTGCAAAAGGAATGCTCT 58.988 37.500 0.00 0.00 44.14 4.09
3858 6044 4.269363 GCATGATAACTGCAAAAGGAATGC 59.731 41.667 0.00 5.58 44.08 3.56
3893 6079 8.814448 AAGACTTATATTTAGGAATGGAGGGA 57.186 34.615 0.00 0.00 0.00 4.20
3894 6080 9.289782 CAAAGACTTATATTTAGGAATGGAGGG 57.710 37.037 0.00 0.00 0.00 4.30
3895 6081 9.853177 ACAAAGACTTATATTTAGGAATGGAGG 57.147 33.333 0.00 0.00 0.00 4.30
3922 6108 9.371136 CCGTATGTGATGCATAGTAAAATATCT 57.629 33.333 0.00 0.00 40.42 1.98
3923 6109 9.366216 TCCGTATGTGATGCATAGTAAAATATC 57.634 33.333 0.00 0.00 40.42 1.63
3924 6110 9.890629 ATCCGTATGTGATGCATAGTAAAATAT 57.109 29.630 0.00 0.00 40.42 1.28
3925 6111 9.150348 CATCCGTATGTGATGCATAGTAAAATA 57.850 33.333 0.00 0.00 40.42 1.40
3926 6112 7.661437 ACATCCGTATGTGATGCATAGTAAAAT 59.339 33.333 0.00 0.00 44.79 1.82
3927 6113 6.989759 ACATCCGTATGTGATGCATAGTAAAA 59.010 34.615 0.00 0.00 44.79 1.52
3928 6114 6.521162 ACATCCGTATGTGATGCATAGTAAA 58.479 36.000 0.00 0.00 44.79 2.01
3929 6115 6.096673 ACATCCGTATGTGATGCATAGTAA 57.903 37.500 0.00 0.00 44.79 2.24
3930 6116 5.722021 ACATCCGTATGTGATGCATAGTA 57.278 39.130 0.00 0.00 44.79 1.82
3931 6117 4.607293 ACATCCGTATGTGATGCATAGT 57.393 40.909 0.00 0.00 44.79 2.12
3932 6118 6.579491 CATACATCCGTATGTGATGCATAG 57.421 41.667 3.56 0.00 46.70 2.23
3943 6129 9.371136 CTAAAATGCATCTACATACATCCGTAT 57.629 33.333 0.00 0.00 38.96 3.06
3944 6130 8.581578 TCTAAAATGCATCTACATACATCCGTA 58.418 33.333 0.00 0.00 0.00 4.02
3945 6131 7.441836 TCTAAAATGCATCTACATACATCCGT 58.558 34.615 0.00 0.00 0.00 4.69
3946 6132 7.600375 ACTCTAAAATGCATCTACATACATCCG 59.400 37.037 0.00 0.00 0.00 4.18
3947 6133 8.715998 CACTCTAAAATGCATCTACATACATCC 58.284 37.037 0.00 0.00 0.00 3.51
3948 6134 9.265901 ACACTCTAAAATGCATCTACATACATC 57.734 33.333 0.00 0.00 0.00 3.06
3950 6136 9.750125 CTACACTCTAAAATGCATCTACATACA 57.250 33.333 0.00 0.00 0.00 2.29
3951 6137 9.967346 TCTACACTCTAAAATGCATCTACATAC 57.033 33.333 0.00 0.00 0.00 2.39
3954 6140 9.534565 GAATCTACACTCTAAAATGCATCTACA 57.465 33.333 0.00 0.00 0.00 2.74
3955 6141 9.534565 TGAATCTACACTCTAAAATGCATCTAC 57.465 33.333 0.00 0.00 0.00 2.59
3956 6142 9.534565 GTGAATCTACACTCTAAAATGCATCTA 57.465 33.333 0.00 0.00 37.73 1.98
3957 6143 8.263640 AGTGAATCTACACTCTAAAATGCATCT 58.736 33.333 0.00 0.00 46.36 2.90
3958 6144 8.430801 AGTGAATCTACACTCTAAAATGCATC 57.569 34.615 0.00 0.00 46.36 3.91
3971 6157 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
3972 6158 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
3973 6159 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
3974 6160 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
3975 6161 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
3976 6162 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
3977 6163 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
3978 6164 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
3979 6165 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
3980 6166 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
3981 6167 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
3982 6168 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
3983 6169 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
3984 6170 4.188462 TGGACTACATACGGAGCAAAATG 58.812 43.478 0.00 0.00 0.00 2.32
3985 6171 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
3986 6172 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
3987 6173 4.647853 ACTATGGACTACATACGGAGCAAA 59.352 41.667 0.00 0.00 41.03 3.68
3988 6174 4.037565 CACTATGGACTACATACGGAGCAA 59.962 45.833 0.00 0.00 41.03 3.91
3989 6175 3.568430 CACTATGGACTACATACGGAGCA 59.432 47.826 0.00 0.00 41.03 4.26
3990 6176 3.819337 TCACTATGGACTACATACGGAGC 59.181 47.826 0.00 0.00 41.03 4.70
3991 6177 6.387041 TTTCACTATGGACTACATACGGAG 57.613 41.667 0.00 0.00 41.03 4.63
3992 6178 6.971726 ATTTCACTATGGACTACATACGGA 57.028 37.500 0.00 0.00 41.03 4.69
3993 6179 8.740906 AGATATTTCACTATGGACTACATACGG 58.259 37.037 0.00 0.00 41.03 4.02
4020 6206 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
4021 6207 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
4022 6208 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
4023 6209 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
4024 6210 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
4025 6211 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
4026 6212 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
4027 6213 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
4028 6214 7.068702 TGTACTCCCTCCGTTCCTAAATATAA 58.931 38.462 0.00 0.00 0.00 0.98
4029 6215 6.613699 TGTACTCCCTCCGTTCCTAAATATA 58.386 40.000 0.00 0.00 0.00 0.86
4030 6216 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
4031 6217 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
4032 6218 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
4033 6219 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
4034 6220 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
4035 6221 4.524802 TTATGTACTCCCTCCGTTCCTA 57.475 45.455 0.00 0.00 0.00 2.94
4036 6222 3.393426 TTATGTACTCCCTCCGTTCCT 57.607 47.619 0.00 0.00 0.00 3.36
4037 6223 3.196254 TGTTTATGTACTCCCTCCGTTCC 59.804 47.826 0.00 0.00 0.00 3.62
4038 6224 4.460948 TGTTTATGTACTCCCTCCGTTC 57.539 45.455 0.00 0.00 0.00 3.95
4039 6225 4.895668 TTGTTTATGTACTCCCTCCGTT 57.104 40.909 0.00 0.00 0.00 4.44
4040 6226 5.070047 CCTATTGTTTATGTACTCCCTCCGT 59.930 44.000 0.00 0.00 0.00 4.69
4041 6227 5.303589 TCCTATTGTTTATGTACTCCCTCCG 59.696 44.000 0.00 0.00 0.00 4.63
4042 6228 6.742559 TCCTATTGTTTATGTACTCCCTCC 57.257 41.667 0.00 0.00 0.00 4.30
4043 6229 7.715686 CCTTTCCTATTGTTTATGTACTCCCTC 59.284 40.741 0.00 0.00 0.00 4.30
4044 6230 7.404980 TCCTTTCCTATTGTTTATGTACTCCCT 59.595 37.037 0.00 0.00 0.00 4.20
4045 6231 7.571025 TCCTTTCCTATTGTTTATGTACTCCC 58.429 38.462 0.00 0.00 0.00 4.30
4046 6232 9.457436 TTTCCTTTCCTATTGTTTATGTACTCC 57.543 33.333 0.00 0.00 0.00 3.85
4048 6234 9.802039 TGTTTCCTTTCCTATTGTTTATGTACT 57.198 29.630 0.00 0.00 0.00 2.73
4114 6313 1.202545 GCTGTTCTCCCCGGAGTATTC 60.203 57.143 0.73 1.63 42.49 1.75
4123 6322 5.499004 TGTAATATATGGCTGTTCTCCCC 57.501 43.478 0.00 0.00 0.00 4.81
4128 6327 8.621532 TCCTTTGATGTAATATATGGCTGTTC 57.378 34.615 0.00 0.00 0.00 3.18
4133 6333 8.947115 GGTAGTTCCTTTGATGTAATATATGGC 58.053 37.037 0.00 0.00 0.00 4.40
4187 6387 4.142038 TCCTAACTTCTTTTGGGTGCTTC 58.858 43.478 0.00 0.00 31.41 3.86
4208 6408 6.648725 ACTTCTTCTAAAGTCTGAAGTGCATC 59.351 38.462 0.00 0.00 43.56 3.91
4214 6414 6.258727 TGTGCAACTTCTTCTAAAGTCTGAAG 59.741 38.462 0.00 0.00 38.52 3.02
4218 6418 6.767902 TCATTGTGCAACTTCTTCTAAAGTCT 59.232 34.615 0.00 0.00 38.52 3.24
4219 6419 6.853362 GTCATTGTGCAACTTCTTCTAAAGTC 59.147 38.462 0.00 0.00 38.52 3.01
4220 6420 6.318648 TGTCATTGTGCAACTTCTTCTAAAGT 59.681 34.615 0.00 0.00 41.20 2.66
4221 6421 6.728200 TGTCATTGTGCAACTTCTTCTAAAG 58.272 36.000 0.00 0.00 38.04 1.85
4222 6422 6.691754 TGTCATTGTGCAACTTCTTCTAAA 57.308 33.333 0.00 0.00 38.04 1.85
4223 6423 6.691754 TTGTCATTGTGCAACTTCTTCTAA 57.308 33.333 0.00 0.00 38.04 2.10
4224 6424 6.882610 ATTGTCATTGTGCAACTTCTTCTA 57.117 33.333 0.00 0.00 38.04 2.10
4270 6470 3.814283 GCATCTCAGAATTTCTAGGCCAG 59.186 47.826 5.01 0.00 0.00 4.85
4271 6471 3.200605 TGCATCTCAGAATTTCTAGGCCA 59.799 43.478 5.01 0.00 0.00 5.36
4273 6473 4.194640 TGTGCATCTCAGAATTTCTAGGC 58.805 43.478 0.00 0.00 0.00 3.93
4307 6507 4.323562 GGCTTAACTTAGTCATCTGTGGGT 60.324 45.833 0.00 0.00 0.00 4.51
4339 6539 5.198602 AGGGGCTGACTTCAATATTCTTT 57.801 39.130 0.00 0.00 0.00 2.52
4342 6542 4.348168 TCCTAGGGGCTGACTTCAATATTC 59.652 45.833 9.46 0.00 0.00 1.75
4345 6545 3.039011 GTCCTAGGGGCTGACTTCAATA 58.961 50.000 9.46 0.00 0.00 1.90
4415 6628 4.273969 TGTTGTAATGGTTTTCGTCCAGAC 59.726 41.667 0.00 0.00 38.42 3.51
4416 6629 4.273969 GTGTTGTAATGGTTTTCGTCCAGA 59.726 41.667 0.00 0.00 38.42 3.86
4417 6630 4.274950 AGTGTTGTAATGGTTTTCGTCCAG 59.725 41.667 0.00 0.00 38.42 3.86
4418 6631 4.200874 AGTGTTGTAATGGTTTTCGTCCA 58.799 39.130 0.00 0.00 39.41 4.02
4419 6632 4.319984 GGAGTGTTGTAATGGTTTTCGTCC 60.320 45.833 0.00 0.00 0.00 4.79
4420 6633 4.319984 GGGAGTGTTGTAATGGTTTTCGTC 60.320 45.833 0.00 0.00 0.00 4.20
4421 6634 3.566742 GGGAGTGTTGTAATGGTTTTCGT 59.433 43.478 0.00 0.00 0.00 3.85
4422 6635 3.566322 TGGGAGTGTTGTAATGGTTTTCG 59.434 43.478 0.00 0.00 0.00 3.46
4423 6636 4.339814 TGTGGGAGTGTTGTAATGGTTTTC 59.660 41.667 0.00 0.00 0.00 2.29
4424 6637 4.282496 TGTGGGAGTGTTGTAATGGTTTT 58.718 39.130 0.00 0.00 0.00 2.43
4425 6638 3.904717 TGTGGGAGTGTTGTAATGGTTT 58.095 40.909 0.00 0.00 0.00 3.27
4448 6661 1.844289 TAGACCGGGGTGCCTTGTT 60.844 57.895 6.32 0.00 0.00 2.83
4528 6759 8.042515 TGAAGAAGTGATCACAATGACATATCA 58.957 33.333 27.02 14.37 39.83 2.15
4532 6763 7.698506 ATTGAAGAAGTGATCACAATGACAT 57.301 32.000 27.02 8.30 36.60 3.06
4539 6770 6.712095 AGTTGCTTATTGAAGAAGTGATCACA 59.288 34.615 27.02 5.42 34.25 3.58
4542 6773 6.456181 CGGAGTTGCTTATTGAAGAAGTGATC 60.456 42.308 1.26 0.00 34.25 2.92
4552 6783 4.265904 TGAAGTCGGAGTTGCTTATTGA 57.734 40.909 2.13 0.00 0.00 2.57
4556 6787 3.953712 TGATGAAGTCGGAGTTGCTTA 57.046 42.857 2.13 0.00 0.00 3.09
4574 6805 2.862541 CTCTTGGTTGGTTGTCCATGA 58.137 47.619 0.00 0.00 43.91 3.07
4576 6807 1.620822 GCTCTTGGTTGGTTGTCCAT 58.379 50.000 0.00 0.00 43.91 3.41
4580 6811 0.846693 AGAGGCTCTTGGTTGGTTGT 59.153 50.000 12.24 0.00 0.00 3.32
4591 6822 3.069872 GTGATGATGATGACAGAGGCTCT 59.930 47.826 12.24 12.24 0.00 4.09
4594 6825 3.472283 AGTGATGATGATGACAGAGGC 57.528 47.619 0.00 0.00 0.00 4.70
4599 6830 4.100653 GGAGGAGAAGTGATGATGATGACA 59.899 45.833 0.00 0.00 0.00 3.58
4600 6831 4.100653 TGGAGGAGAAGTGATGATGATGAC 59.899 45.833 0.00 0.00 0.00 3.06
4601 6832 4.292643 TGGAGGAGAAGTGATGATGATGA 58.707 43.478 0.00 0.00 0.00 2.92
4602 6833 4.684484 TGGAGGAGAAGTGATGATGATG 57.316 45.455 0.00 0.00 0.00 3.07
4603 6834 4.472470 TGTTGGAGGAGAAGTGATGATGAT 59.528 41.667 0.00 0.00 0.00 2.45
4604 6835 3.840078 TGTTGGAGGAGAAGTGATGATGA 59.160 43.478 0.00 0.00 0.00 2.92
4605 6836 4.212143 TGTTGGAGGAGAAGTGATGATG 57.788 45.455 0.00 0.00 0.00 3.07
4606 6837 4.841422 CTTGTTGGAGGAGAAGTGATGAT 58.159 43.478 0.00 0.00 0.00 2.45
4607 6838 3.557898 GCTTGTTGGAGGAGAAGTGATGA 60.558 47.826 0.00 0.00 0.00 2.92
4608 6839 2.746362 GCTTGTTGGAGGAGAAGTGATG 59.254 50.000 0.00 0.00 0.00 3.07
4609 6840 2.373169 TGCTTGTTGGAGGAGAAGTGAT 59.627 45.455 0.00 0.00 0.00 3.06
4610 6841 1.768275 TGCTTGTTGGAGGAGAAGTGA 59.232 47.619 0.00 0.00 0.00 3.41
4611 6842 2.260844 TGCTTGTTGGAGGAGAAGTG 57.739 50.000 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.