Multiple sequence alignment - TraesCS5A01G317200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G317200 chr5A 100.000 2588 0 0 1 2588 528262980 528260393 0.000000e+00 4780.0
1 TraesCS5A01G317200 chr5A 90.909 55 5 0 1372 1426 575658663 575658717 9.930000e-10 75.0
2 TraesCS5A01G317200 chr5A 100.000 31 0 0 1 31 37824045 37824015 1.000000e-04 58.4
3 TraesCS5A01G317200 chr5B 89.534 1653 77 37 555 2160 501962514 501960911 0.000000e+00 2006.0
4 TraesCS5A01G317200 chr5B 90.000 150 12 2 2178 2326 501960922 501960775 9.450000e-45 191.0
5 TraesCS5A01G317200 chr5B 80.695 259 11 8 41 293 501963166 501962941 5.730000e-37 165.0
6 TraesCS5A01G317200 chr5B 92.727 55 4 0 1372 1426 559992322 559992376 2.130000e-11 80.5
7 TraesCS5A01G317200 chr5B 89.286 56 6 0 1371 1426 64265108 64265053 1.280000e-08 71.3
8 TraesCS5A01G317200 chr5D 88.307 1642 96 44 557 2160 415623045 415621462 0.000000e+00 1881.0
9 TraesCS5A01G317200 chr5D 92.683 369 26 1 2178 2546 415620554 415620187 4.900000e-147 531.0
10 TraesCS5A01G317200 chr5D 94.881 293 14 1 1868 2159 415620836 415620544 8.440000e-125 457.0
11 TraesCS5A01G317200 chr5D 90.667 150 11 3 2178 2326 415621473 415621326 2.030000e-46 196.0
12 TraesCS5A01G317200 chr5D 92.727 55 4 0 1372 1426 457777269 457777323 2.130000e-11 80.5
13 TraesCS5A01G317200 chr5D 90.566 53 5 0 1371 1423 66756465 66756517 1.280000e-08 71.3
14 TraesCS5A01G317200 chr3D 89.286 56 6 0 1372 1427 81207449 81207504 1.280000e-08 71.3
15 TraesCS5A01G317200 chr3A 89.286 56 6 0 1372 1427 95477886 95477941 1.280000e-08 71.3
16 TraesCS5A01G317200 chr4A 100.000 31 0 0 1 31 108515307 108515277 1.000000e-04 58.4
17 TraesCS5A01G317200 chr4A 100.000 30 0 0 2 31 14344772 14344743 3.600000e-04 56.5
18 TraesCS5A01G317200 chr2A 97.059 34 1 0 1 34 715804332 715804299 1.000000e-04 58.4
19 TraesCS5A01G317200 chr7D 100.000 30 0 0 5 34 379311570 379311599 3.600000e-04 56.5
20 TraesCS5A01G317200 chr6A 100.000 30 0 0 2 31 550715489 550715460 3.600000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G317200 chr5A 528260393 528262980 2587 True 4780.000000 4780 100.0000 1 2588 1 chr5A.!!$R2 2587
1 TraesCS5A01G317200 chr5B 501960775 501963166 2391 True 787.333333 2006 86.7430 41 2326 3 chr5B.!!$R2 2285
2 TraesCS5A01G317200 chr5D 415620187 415623045 2858 True 766.250000 1881 91.6345 557 2546 4 chr5D.!!$R1 1989

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
369 375 0.035317 TTCAAGATGCTCGCCTGTGT 59.965 50.0 0.0 0.0 0.0 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2091 2379 0.032678 CCAAGGATCGACGAGGGATG 59.967 60.0 3.01 0.3 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.879427 TGCGACAAGTAATTTGAAACGG 58.121 40.909 0.00 0.00 39.21 4.44
23 24 3.560481 TGCGACAAGTAATTTGAAACGGA 59.440 39.130 0.00 0.00 39.21 4.69
24 25 4.148891 GCGACAAGTAATTTGAAACGGAG 58.851 43.478 0.00 0.00 39.21 4.63
25 26 4.084223 GCGACAAGTAATTTGAAACGGAGA 60.084 41.667 0.00 0.00 39.21 3.71
26 27 5.609088 CGACAAGTAATTTGAAACGGAGAG 58.391 41.667 0.00 0.00 39.21 3.20
27 28 5.404366 CGACAAGTAATTTGAAACGGAGAGA 59.596 40.000 0.00 0.00 39.21 3.10
28 29 6.400091 CGACAAGTAATTTGAAACGGAGAGAG 60.400 42.308 0.00 0.00 39.21 3.20
29 30 6.289064 ACAAGTAATTTGAAACGGAGAGAGT 58.711 36.000 0.00 0.00 39.21 3.24
30 31 7.439381 ACAAGTAATTTGAAACGGAGAGAGTA 58.561 34.615 0.00 0.00 39.21 2.59
31 32 7.384387 ACAAGTAATTTGAAACGGAGAGAGTAC 59.616 37.037 0.00 0.00 39.21 2.73
32 33 7.229581 AGTAATTTGAAACGGAGAGAGTACT 57.770 36.000 0.00 0.00 0.00 2.73
33 34 7.668492 AGTAATTTGAAACGGAGAGAGTACTT 58.332 34.615 0.00 0.00 0.00 2.24
34 35 7.813627 AGTAATTTGAAACGGAGAGAGTACTTC 59.186 37.037 0.00 0.00 0.00 3.01
35 36 5.786264 TTTGAAACGGAGAGAGTACTTCT 57.214 39.130 0.00 1.96 39.43 2.85
36 37 5.786264 TTGAAACGGAGAGAGTACTTCTT 57.214 39.130 0.00 0.00 35.87 2.52
37 38 5.786264 TGAAACGGAGAGAGTACTTCTTT 57.214 39.130 0.00 0.00 35.87 2.52
38 39 6.889301 TGAAACGGAGAGAGTACTTCTTTA 57.111 37.500 0.00 0.00 35.87 1.85
39 40 6.675987 TGAAACGGAGAGAGTACTTCTTTAC 58.324 40.000 0.00 0.00 35.87 2.01
80 81 0.671796 CGGGACATTCATGCATGCAT 59.328 50.000 27.46 27.46 37.08 3.96
81 82 1.881324 CGGGACATTCATGCATGCATA 59.119 47.619 31.73 18.79 34.91 3.14
82 83 2.490509 CGGGACATTCATGCATGCATAT 59.509 45.455 31.73 20.22 34.91 1.78
83 84 3.672241 CGGGACATTCATGCATGCATATG 60.672 47.826 31.73 30.39 34.91 1.78
143 144 1.378646 TCGTCGGATCTCCTGTGCT 60.379 57.895 0.00 0.00 0.00 4.40
144 145 1.226802 CGTCGGATCTCCTGTGCTG 60.227 63.158 0.00 0.00 0.00 4.41
148 149 1.812922 GGATCTCCTGTGCTGTGCG 60.813 63.158 0.00 0.00 0.00 5.34
177 178 4.704833 GCTTGACTGGCCGGCTGA 62.705 66.667 28.56 12.71 0.00 4.26
178 179 2.743928 CTTGACTGGCCGGCTGAC 60.744 66.667 28.56 19.22 0.00 3.51
179 180 3.241530 TTGACTGGCCGGCTGACT 61.242 61.111 28.56 6.25 0.00 3.41
180 181 3.535629 TTGACTGGCCGGCTGACTG 62.536 63.158 28.56 16.02 0.00 3.51
181 182 4.767255 GACTGGCCGGCTGACTGG 62.767 72.222 28.56 12.24 46.21 4.00
207 208 1.947642 CATCGCCGGCTACCGTTAC 60.948 63.158 26.68 0.00 46.80 2.50
212 213 2.882301 CGGCTACCGTTACCGTGC 60.882 66.667 0.00 0.00 42.73 5.34
214 215 1.079612 GGCTACCGTTACCGTGCTT 60.080 57.895 0.00 0.00 0.00 3.91
216 217 1.356527 GCTACCGTTACCGTGCTTGG 61.357 60.000 0.00 0.00 0.00 3.61
217 218 0.037975 CTACCGTTACCGTGCTTGGT 60.038 55.000 5.75 5.75 46.26 3.67
218 219 0.392336 TACCGTTACCGTGCTTGGTT 59.608 50.000 5.76 0.00 43.56 3.67
220 221 1.572447 CGTTACCGTGCTTGGTTGG 59.428 57.895 5.76 0.00 43.56 3.77
221 222 1.161563 CGTTACCGTGCTTGGTTGGT 61.162 55.000 5.76 0.00 43.56 3.67
222 223 1.026584 GTTACCGTGCTTGGTTGGTT 58.973 50.000 5.76 0.00 43.56 3.67
223 224 1.002142 GTTACCGTGCTTGGTTGGTTC 60.002 52.381 5.76 0.00 43.56 3.62
224 225 0.180642 TACCGTGCTTGGTTGGTTCA 59.819 50.000 5.76 0.00 43.56 3.18
232 233 2.036346 GCTTGGTTGGTTCAGCTTGATT 59.964 45.455 0.00 0.00 0.00 2.57
234 235 4.301628 CTTGGTTGGTTCAGCTTGATTTC 58.698 43.478 0.00 0.00 0.00 2.17
244 245 2.019897 GCTTGATTTCCCATGGGCGG 62.020 60.000 27.41 10.82 34.68 6.13
254 255 2.044946 ATGGGCGGCTTCCTGTTC 60.045 61.111 9.56 0.00 0.00 3.18
281 287 4.213482 CAGCCCTTGTGTGAACTTAACTAC 59.787 45.833 0.00 0.00 0.00 2.73
293 299 9.472361 TGTGAACTTAACTACATTGTACTTCTC 57.528 33.333 0.00 0.00 0.00 2.87
294 300 9.694137 GTGAACTTAACTACATTGTACTTCTCT 57.306 33.333 0.00 0.00 0.00 3.10
298 304 9.915629 ACTTAACTACATTGTACTTCTCTTCTG 57.084 33.333 0.00 0.00 0.00 3.02
299 305 8.758633 TTAACTACATTGTACTTCTCTTCTGC 57.241 34.615 0.00 0.00 0.00 4.26
301 307 6.940739 ACTACATTGTACTTCTCTTCTGCAT 58.059 36.000 0.00 0.00 0.00 3.96
302 308 8.067751 ACTACATTGTACTTCTCTTCTGCATA 57.932 34.615 0.00 0.00 0.00 3.14
303 309 8.194104 ACTACATTGTACTTCTCTTCTGCATAG 58.806 37.037 0.00 0.00 0.00 2.23
304 310 7.175347 ACATTGTACTTCTCTTCTGCATAGA 57.825 36.000 0.00 0.00 0.00 1.98
305 311 7.615403 ACATTGTACTTCTCTTCTGCATAGAA 58.385 34.615 0.00 0.00 40.53 2.10
310 316 9.155975 TGTACTTCTCTTCTGCATAGAAAAATC 57.844 33.333 0.00 0.00 42.11 2.17
311 317 9.377312 GTACTTCTCTTCTGCATAGAAAAATCT 57.623 33.333 0.00 0.00 42.11 2.40
312 318 8.266392 ACTTCTCTTCTGCATAGAAAAATCTG 57.734 34.615 0.00 0.00 42.11 2.90
314 320 6.118170 TCTCTTCTGCATAGAAAAATCTGGG 58.882 40.000 0.00 0.00 42.11 4.45
315 321 6.065976 TCTTCTGCATAGAAAAATCTGGGA 57.934 37.500 0.00 0.00 42.11 4.37
316 322 6.666678 TCTTCTGCATAGAAAAATCTGGGAT 58.333 36.000 0.00 0.00 42.11 3.85
317 323 7.121382 TCTTCTGCATAGAAAAATCTGGGATT 58.879 34.615 0.00 0.00 42.11 3.01
318 324 8.274322 TCTTCTGCATAGAAAAATCTGGGATTA 58.726 33.333 0.00 0.00 42.11 1.75
319 325 7.807977 TCTGCATAGAAAAATCTGGGATTAC 57.192 36.000 0.00 0.00 0.00 1.89
320 326 7.345691 TCTGCATAGAAAAATCTGGGATTACA 58.654 34.615 0.00 0.00 0.00 2.41
321 327 7.833682 TCTGCATAGAAAAATCTGGGATTACAA 59.166 33.333 0.00 0.00 0.00 2.41
322 328 7.999679 TGCATAGAAAAATCTGGGATTACAAG 58.000 34.615 0.00 0.00 0.00 3.16
323 329 7.615365 TGCATAGAAAAATCTGGGATTACAAGT 59.385 33.333 0.00 0.00 0.00 3.16
324 330 7.917505 GCATAGAAAAATCTGGGATTACAAGTG 59.082 37.037 0.00 0.00 0.00 3.16
325 331 6.272822 AGAAAAATCTGGGATTACAAGTGC 57.727 37.500 0.00 0.00 0.00 4.40
326 332 6.012745 AGAAAAATCTGGGATTACAAGTGCT 58.987 36.000 0.00 0.00 0.00 4.40
327 333 5.649782 AAAATCTGGGATTACAAGTGCTG 57.350 39.130 0.00 0.00 0.00 4.41
328 334 2.787473 TCTGGGATTACAAGTGCTGG 57.213 50.000 0.00 0.00 0.00 4.85
329 335 1.985159 TCTGGGATTACAAGTGCTGGT 59.015 47.619 0.00 0.00 0.00 4.00
330 336 3.178046 TCTGGGATTACAAGTGCTGGTA 58.822 45.455 0.00 0.00 0.00 3.25
331 337 3.197766 TCTGGGATTACAAGTGCTGGTAG 59.802 47.826 0.00 0.00 0.00 3.18
332 338 3.178046 TGGGATTACAAGTGCTGGTAGA 58.822 45.455 0.00 0.00 0.00 2.59
333 339 3.055385 TGGGATTACAAGTGCTGGTAGAC 60.055 47.826 0.00 0.00 0.00 2.59
334 340 3.055385 GGGATTACAAGTGCTGGTAGACA 60.055 47.826 0.00 0.00 0.00 3.41
351 357 7.380536 TGGTAGACATAACGTGTTGAATAGTT 58.619 34.615 5.11 0.00 42.36 2.24
352 358 7.543172 TGGTAGACATAACGTGTTGAATAGTTC 59.457 37.037 5.11 0.00 42.36 3.01
354 360 7.956420 AGACATAACGTGTTGAATAGTTCAA 57.044 32.000 5.11 1.24 46.68 2.69
364 370 3.198068 TGAATAGTTCAAGATGCTCGCC 58.802 45.455 0.00 0.00 36.59 5.54
365 371 3.118629 TGAATAGTTCAAGATGCTCGCCT 60.119 43.478 0.00 0.00 36.59 5.52
366 372 2.299993 TAGTTCAAGATGCTCGCCTG 57.700 50.000 0.00 0.00 0.00 4.85
367 373 0.322975 AGTTCAAGATGCTCGCCTGT 59.677 50.000 0.00 0.00 0.00 4.00
369 375 0.035317 TTCAAGATGCTCGCCTGTGT 59.965 50.000 0.00 0.00 0.00 3.72
370 376 0.671472 TCAAGATGCTCGCCTGTGTG 60.671 55.000 0.00 0.00 0.00 3.82
371 377 1.376424 AAGATGCTCGCCTGTGTGG 60.376 57.895 0.00 0.00 39.35 4.17
373 379 3.315142 GATGCTCGCCTGTGTGGGA 62.315 63.158 0.00 0.00 36.00 4.37
374 380 2.803155 GATGCTCGCCTGTGTGGGAA 62.803 60.000 0.00 0.00 36.00 3.97
376 382 1.675641 GCTCGCCTGTGTGGGAAAT 60.676 57.895 0.00 0.00 36.00 2.17
379 385 0.953471 TCGCCTGTGTGGGAAATTCG 60.953 55.000 0.00 0.00 36.00 3.34
381 387 1.595093 GCCTGTGTGGGAAATTCGGG 61.595 60.000 0.00 0.00 36.00 5.14
383 389 0.037590 CTGTGTGGGAAATTCGGGGA 59.962 55.000 0.00 0.00 0.00 4.81
384 390 0.701731 TGTGTGGGAAATTCGGGGAT 59.298 50.000 0.00 0.00 0.00 3.85
385 391 1.102978 GTGTGGGAAATTCGGGGATG 58.897 55.000 0.00 0.00 0.00 3.51
395 401 6.183347 GGAAATTCGGGGATGATAATGATCT 58.817 40.000 0.00 0.00 32.79 2.75
399 405 3.903714 TCGGGGATGATAATGATCTGTGT 59.096 43.478 0.00 0.00 32.79 3.72
400 406 5.083821 TCGGGGATGATAATGATCTGTGTA 58.916 41.667 0.00 0.00 32.79 2.90
402 408 5.047021 CGGGGATGATAATGATCTGTGTACT 60.047 44.000 0.00 0.00 32.79 2.73
403 409 6.169094 GGGGATGATAATGATCTGTGTACTG 58.831 44.000 0.00 0.00 32.79 2.74
404 410 6.239714 GGGGATGATAATGATCTGTGTACTGT 60.240 42.308 0.00 0.00 32.79 3.55
405 411 7.039011 GGGGATGATAATGATCTGTGTACTGTA 60.039 40.741 0.00 0.00 32.79 2.74
406 412 8.535335 GGGATGATAATGATCTGTGTACTGTAT 58.465 37.037 0.00 0.00 32.79 2.29
423 429 4.511454 ACTGTATATATGCAAGTTGTGGCG 59.489 41.667 4.48 0.00 0.00 5.69
428 434 4.264638 GCAAGTTGTGGCGGCGTT 62.265 61.111 9.37 0.00 0.00 4.84
429 435 2.353376 CAAGTTGTGGCGGCGTTG 60.353 61.111 9.37 0.00 0.00 4.10
430 436 2.826738 AAGTTGTGGCGGCGTTGT 60.827 55.556 9.37 0.00 0.00 3.32
431 437 2.830285 AAGTTGTGGCGGCGTTGTC 61.830 57.895 9.37 0.00 0.00 3.18
432 438 3.578272 GTTGTGGCGGCGTTGTCA 61.578 61.111 9.37 0.19 0.00 3.58
433 439 2.593148 TTGTGGCGGCGTTGTCAT 60.593 55.556 9.37 0.00 0.00 3.06
435 441 2.742372 GTGGCGGCGTTGTCATCT 60.742 61.111 9.37 0.00 0.00 2.90
437 443 2.324330 TGGCGGCGTTGTCATCTTG 61.324 57.895 9.37 0.00 0.00 3.02
438 444 2.325082 GGCGGCGTTGTCATCTTGT 61.325 57.895 9.37 0.00 0.00 3.16
440 446 0.040425 GCGGCGTTGTCATCTTGTTT 60.040 50.000 9.37 0.00 0.00 2.83
441 447 1.195900 GCGGCGTTGTCATCTTGTTTA 59.804 47.619 9.37 0.00 0.00 2.01
442 448 2.724839 GCGGCGTTGTCATCTTGTTTAG 60.725 50.000 9.37 0.00 0.00 1.85
443 449 2.478894 CGGCGTTGTCATCTTGTTTAGT 59.521 45.455 0.00 0.00 0.00 2.24
444 450 3.423123 CGGCGTTGTCATCTTGTTTAGTC 60.423 47.826 0.00 0.00 0.00 2.59
445 451 3.496884 GGCGTTGTCATCTTGTTTAGTCA 59.503 43.478 0.00 0.00 0.00 3.41
446 452 4.154195 GGCGTTGTCATCTTGTTTAGTCAT 59.846 41.667 0.00 0.00 0.00 3.06
457 658 3.749226 TGTTTAGTCATGGTGCATGTGA 58.251 40.909 0.00 0.00 41.98 3.58
458 659 3.752747 TGTTTAGTCATGGTGCATGTGAG 59.247 43.478 0.00 0.00 41.98 3.51
459 660 3.701205 TTAGTCATGGTGCATGTGAGT 57.299 42.857 10.03 10.03 41.98 3.41
460 661 1.817357 AGTCATGGTGCATGTGAGTG 58.183 50.000 0.00 0.00 41.98 3.51
461 662 1.348696 AGTCATGGTGCATGTGAGTGA 59.651 47.619 0.00 0.00 41.98 3.41
476 678 2.143122 GAGTGATGCAAAGGTTCGACA 58.857 47.619 0.00 0.00 0.00 4.35
478 680 3.149196 AGTGATGCAAAGGTTCGACATT 58.851 40.909 0.00 0.00 0.00 2.71
483 685 2.253603 GCAAAGGTTCGACATTGCATC 58.746 47.619 14.96 0.00 45.61 3.91
484 686 2.867429 CAAAGGTTCGACATTGCATCC 58.133 47.619 0.00 0.00 0.00 3.51
485 687 2.489329 CAAAGGTTCGACATTGCATCCT 59.511 45.455 0.00 0.00 0.00 3.24
486 688 3.627395 AAGGTTCGACATTGCATCCTA 57.373 42.857 0.00 0.00 0.00 2.94
487 689 3.185246 AGGTTCGACATTGCATCCTAG 57.815 47.619 0.00 0.00 0.00 3.02
488 690 2.158900 AGGTTCGACATTGCATCCTAGG 60.159 50.000 0.82 0.82 0.00 3.02
489 691 2.420129 GGTTCGACATTGCATCCTAGGT 60.420 50.000 9.08 0.00 0.00 3.08
490 692 2.866762 GTTCGACATTGCATCCTAGGTC 59.133 50.000 9.08 0.05 0.00 3.85
492 694 2.362397 TCGACATTGCATCCTAGGTCTC 59.638 50.000 9.08 0.00 0.00 3.36
493 695 2.546795 CGACATTGCATCCTAGGTCTCC 60.547 54.545 9.08 0.00 0.00 3.71
494 696 2.703007 GACATTGCATCCTAGGTCTCCT 59.297 50.000 9.08 0.00 37.71 3.69
495 697 3.898123 GACATTGCATCCTAGGTCTCCTA 59.102 47.826 9.08 0.00 34.61 2.94
496 698 4.298626 ACATTGCATCCTAGGTCTCCTAA 58.701 43.478 9.08 0.00 35.49 2.69
497 699 4.721776 ACATTGCATCCTAGGTCTCCTAAA 59.278 41.667 9.08 0.00 35.49 1.85
498 700 5.370880 ACATTGCATCCTAGGTCTCCTAAAT 59.629 40.000 9.08 0.00 35.49 1.40
499 701 5.975988 TTGCATCCTAGGTCTCCTAAATT 57.024 39.130 9.08 0.00 35.49 1.82
501 703 5.684704 TGCATCCTAGGTCTCCTAAATTTG 58.315 41.667 9.08 0.00 35.49 2.32
502 704 4.517075 GCATCCTAGGTCTCCTAAATTTGC 59.483 45.833 9.08 0.00 35.49 3.68
504 706 5.975988 TCCTAGGTCTCCTAAATTTGCAT 57.024 39.130 9.08 0.00 35.49 3.96
505 707 5.684704 TCCTAGGTCTCCTAAATTTGCATG 58.315 41.667 9.08 0.00 35.49 4.06
506 708 5.191722 TCCTAGGTCTCCTAAATTTGCATGT 59.808 40.000 9.08 0.00 35.49 3.21
507 709 5.529060 CCTAGGTCTCCTAAATTTGCATGTC 59.471 44.000 0.00 0.00 35.49 3.06
508 710 4.922206 AGGTCTCCTAAATTTGCATGTCA 58.078 39.130 0.00 0.00 28.47 3.58
509 711 5.324409 AGGTCTCCTAAATTTGCATGTCAA 58.676 37.500 0.00 0.00 28.47 3.18
510 712 5.954150 AGGTCTCCTAAATTTGCATGTCAAT 59.046 36.000 0.00 0.00 30.12 2.57
511 713 6.438425 AGGTCTCCTAAATTTGCATGTCAATT 59.562 34.615 0.00 0.00 30.12 2.32
512 714 7.038799 AGGTCTCCTAAATTTGCATGTCAATTT 60.039 33.333 16.45 16.45 30.12 1.82
514 716 7.008628 GTCTCCTAAATTTGCATGTCAATTTCG 59.991 37.037 15.95 11.80 34.12 3.46
515 717 6.686630 TCCTAAATTTGCATGTCAATTTCGT 58.313 32.000 15.95 4.66 34.12 3.85
516 718 7.821652 TCCTAAATTTGCATGTCAATTTCGTA 58.178 30.769 15.95 4.00 34.12 3.43
517 719 8.300286 TCCTAAATTTGCATGTCAATTTCGTAA 58.700 29.630 15.95 3.74 34.12 3.18
519 721 6.949578 AATTTGCATGTCAATTTCGTAAGG 57.050 33.333 0.00 0.00 34.12 2.69
520 722 5.697473 TTTGCATGTCAATTTCGTAAGGA 57.303 34.783 0.00 0.00 34.12 3.36
521 723 5.895636 TTGCATGTCAATTTCGTAAGGAT 57.104 34.783 0.00 0.00 38.47 3.24
522 724 5.233957 TGCATGTCAATTTCGTAAGGATG 57.766 39.130 0.00 0.00 38.47 3.51
523 725 4.037690 GCATGTCAATTTCGTAAGGATGC 58.962 43.478 0.00 0.00 38.47 3.91
524 726 4.201950 GCATGTCAATTTCGTAAGGATGCT 60.202 41.667 0.00 0.00 32.72 3.79
525 727 4.944962 TGTCAATTTCGTAAGGATGCTG 57.055 40.909 0.00 0.00 38.47 4.41
526 728 3.126858 TGTCAATTTCGTAAGGATGCTGC 59.873 43.478 0.00 0.00 38.47 5.25
527 729 3.126858 GTCAATTTCGTAAGGATGCTGCA 59.873 43.478 4.13 4.13 38.47 4.41
528 730 3.947196 TCAATTTCGTAAGGATGCTGCAT 59.053 39.130 16.20 16.20 38.47 3.96
530 732 5.764686 TCAATTTCGTAAGGATGCTGCATAT 59.235 36.000 16.23 7.64 38.47 1.78
531 733 6.262944 TCAATTTCGTAAGGATGCTGCATATT 59.737 34.615 16.23 15.24 38.47 1.28
534 736 6.785488 TTCGTAAGGATGCTGCATATTTAG 57.215 37.500 16.23 10.50 38.47 1.85
535 737 5.853936 TCGTAAGGATGCTGCATATTTAGT 58.146 37.500 16.23 0.93 38.47 2.24
536 738 6.288294 TCGTAAGGATGCTGCATATTTAGTT 58.712 36.000 16.23 5.63 38.47 2.24
537 739 6.202762 TCGTAAGGATGCTGCATATTTAGTTG 59.797 38.462 16.23 9.58 38.47 3.16
538 740 4.843220 AGGATGCTGCATATTTAGTTGC 57.157 40.909 16.23 0.00 39.33 4.17
539 741 4.467769 AGGATGCTGCATATTTAGTTGCT 58.532 39.130 16.23 0.00 39.60 3.91
540 742 4.277672 AGGATGCTGCATATTTAGTTGCTG 59.722 41.667 16.23 0.00 39.60 4.41
543 745 3.680642 CTGCATATTTAGTTGCTGCGT 57.319 42.857 0.00 0.00 39.60 5.24
544 746 4.019919 CTGCATATTTAGTTGCTGCGTT 57.980 40.909 0.00 0.00 39.60 4.84
545 747 3.757184 TGCATATTTAGTTGCTGCGTTG 58.243 40.909 0.00 0.00 39.60 4.10
546 748 3.108144 GCATATTTAGTTGCTGCGTTGG 58.892 45.455 0.00 0.00 35.95 3.77
547 749 3.181501 GCATATTTAGTTGCTGCGTTGGA 60.182 43.478 0.00 0.00 35.95 3.53
548 750 4.591202 CATATTTAGTTGCTGCGTTGGAG 58.409 43.478 0.00 0.00 0.00 3.86
549 751 2.248280 TTTAGTTGCTGCGTTGGAGA 57.752 45.000 0.00 0.00 0.00 3.71
550 752 1.508632 TTAGTTGCTGCGTTGGAGAC 58.491 50.000 0.00 0.00 0.00 3.36
581 788 2.096496 CGCCTGAGCTGATTTGTTTAGG 59.904 50.000 0.00 0.00 36.60 2.69
680 887 4.323477 CCAGGGTTCGTTGCCGGA 62.323 66.667 5.05 0.00 33.95 5.14
821 1034 4.890306 GCTCCCCCTCCCCTCCTC 62.890 77.778 0.00 0.00 0.00 3.71
824 1037 2.708132 CCCCCTCCCCTCCTCCTA 60.708 72.222 0.00 0.00 0.00 2.94
829 1042 3.436028 TCCCCTCCTCCTACCCGG 61.436 72.222 0.00 0.00 0.00 5.73
831 1044 4.475444 CCCTCCTCCTACCCGGCA 62.475 72.222 0.00 0.00 0.00 5.69
848 1061 1.395826 GCACAGAGGATCGGGTAGCT 61.396 60.000 0.00 0.00 42.67 3.32
919 1148 0.598065 AAGCTTTGCCATTCACGACC 59.402 50.000 0.00 0.00 0.00 4.79
935 1164 2.198304 GACCCACGCCTTCCATTCCT 62.198 60.000 0.00 0.00 0.00 3.36
938 1167 0.541863 CCACGCCTTCCATTCCTAGT 59.458 55.000 0.00 0.00 0.00 2.57
939 1168 1.656652 CACGCCTTCCATTCCTAGTG 58.343 55.000 0.00 0.00 0.00 2.74
1005 1247 7.554118 CAGTACATTAATTTGAGAGTGATGGGT 59.446 37.037 0.00 0.00 0.00 4.51
1014 1256 3.235200 GAGAGTGATGGGTAGCTATGGT 58.765 50.000 0.00 0.00 0.00 3.55
1258 1500 2.517959 AGCAACCAAAGCTTCAGCATA 58.482 42.857 0.00 0.00 45.16 3.14
1261 1503 3.688272 CAACCAAAGCTTCAGCATATCG 58.312 45.455 0.00 0.00 45.16 2.92
1263 1505 3.813443 ACCAAAGCTTCAGCATATCGAT 58.187 40.909 2.16 2.16 45.16 3.59
1264 1506 3.812053 ACCAAAGCTTCAGCATATCGATC 59.188 43.478 0.00 0.00 45.16 3.69
1266 1508 3.650070 AAGCTTCAGCATATCGATCGA 57.350 42.857 21.86 21.86 45.16 3.59
1267 1509 3.865011 AGCTTCAGCATATCGATCGAT 57.135 42.857 31.39 31.39 45.16 3.59
1269 1511 2.857152 GCTTCAGCATATCGATCGATCC 59.143 50.000 32.50 21.14 41.59 3.36
1270 1512 3.674410 GCTTCAGCATATCGATCGATCCA 60.674 47.826 32.50 17.91 41.59 3.41
1271 1513 3.494045 TCAGCATATCGATCGATCCAC 57.506 47.619 32.50 21.62 36.17 4.02
1272 1514 2.164422 TCAGCATATCGATCGATCCACC 59.836 50.000 32.50 18.87 36.17 4.61
1273 1515 2.094545 CAGCATATCGATCGATCCACCA 60.095 50.000 32.50 16.40 36.17 4.17
1274 1516 2.762887 AGCATATCGATCGATCCACCAT 59.237 45.455 32.50 17.93 36.17 3.55
1275 1517 3.119291 GCATATCGATCGATCCACCATC 58.881 50.000 32.50 12.83 36.17 3.51
1276 1518 3.181482 GCATATCGATCGATCCACCATCT 60.181 47.826 32.50 10.49 36.17 2.90
1277 1519 4.679106 GCATATCGATCGATCCACCATCTT 60.679 45.833 32.50 9.73 36.17 2.40
1278 1520 5.414360 CATATCGATCGATCCACCATCTTT 58.586 41.667 32.50 9.20 36.17 2.52
1279 1521 3.819564 TCGATCGATCCACCATCTTTT 57.180 42.857 19.51 0.00 0.00 2.27
1280 1522 3.457234 TCGATCGATCCACCATCTTTTG 58.543 45.455 19.51 1.29 0.00 2.44
1292 1534 4.127566 CCATCTTTTGGCCATGTTAAGG 57.872 45.455 6.09 1.21 39.09 2.69
1305 1557 4.290155 CATGTTAAGGTTTGTGCACTGAC 58.710 43.478 19.41 15.54 0.00 3.51
1306 1558 2.353269 TGTTAAGGTTTGTGCACTGACG 59.647 45.455 19.41 0.00 0.00 4.35
1307 1559 0.941542 TAAGGTTTGTGCACTGACGC 59.058 50.000 19.41 10.11 0.00 5.19
1308 1560 2.047151 AAGGTTTGTGCACTGACGCG 62.047 55.000 19.41 3.53 33.35 6.01
1309 1561 2.722188 GTTTGTGCACTGACGCGC 60.722 61.111 19.41 0.00 42.81 6.86
1445 1708 0.597118 CACCACCGCACCAATTGTTG 60.597 55.000 4.43 0.92 0.00 3.33
1737 2006 5.630121 TGTGGTTGAAGTTTGACCTGATAT 58.370 37.500 9.26 0.00 34.52 1.63
1738 2007 6.774673 TGTGGTTGAAGTTTGACCTGATATA 58.225 36.000 9.26 0.00 34.52 0.86
1752 2021 9.877222 TTGACCTGATATACTAAACTGATAGGA 57.123 33.333 0.00 0.00 0.00 2.94
1753 2022 9.521841 TGACCTGATATACTAAACTGATAGGAG 57.478 37.037 0.00 0.00 0.00 3.69
1794 2063 6.927294 ATGTTTATCCCGTTTCAGATCTTC 57.073 37.500 0.00 0.00 0.00 2.87
1798 2067 1.067142 TCCCGTTTCAGATCTTCGGTG 60.067 52.381 17.88 12.26 39.62 4.94
1871 2146 1.202927 TGAGGAACCAAGGAAGCAAGG 60.203 52.381 0.00 0.00 0.00 3.61
1872 2147 1.073923 GAGGAACCAAGGAAGCAAGGA 59.926 52.381 0.00 0.00 0.00 3.36
1873 2148 1.499007 AGGAACCAAGGAAGCAAGGAA 59.501 47.619 0.00 0.00 0.00 3.36
1874 2149 1.889170 GGAACCAAGGAAGCAAGGAAG 59.111 52.381 0.00 0.00 0.00 3.46
1875 2150 2.489073 GGAACCAAGGAAGCAAGGAAGA 60.489 50.000 0.00 0.00 0.00 2.87
1876 2151 2.278332 ACCAAGGAAGCAAGGAAGAC 57.722 50.000 0.00 0.00 0.00 3.01
1877 2152 1.160137 CCAAGGAAGCAAGGAAGACG 58.840 55.000 0.00 0.00 0.00 4.18
1878 2153 1.270839 CCAAGGAAGCAAGGAAGACGA 60.271 52.381 0.00 0.00 0.00 4.20
1879 2154 2.616510 CCAAGGAAGCAAGGAAGACGAT 60.617 50.000 0.00 0.00 0.00 3.73
1880 2155 2.393271 AGGAAGCAAGGAAGACGATG 57.607 50.000 0.00 0.00 0.00 3.84
1881 2156 1.065854 AGGAAGCAAGGAAGACGATGG 60.066 52.381 0.00 0.00 0.00 3.51
1882 2157 0.729690 GAAGCAAGGAAGACGATGGC 59.270 55.000 0.00 0.00 0.00 4.40
1883 2158 1.021390 AAGCAAGGAAGACGATGGCG 61.021 55.000 0.00 0.00 44.79 5.69
1976 2259 6.739331 TGGGAATAAAATGTTGGTTGACTT 57.261 33.333 0.00 0.00 0.00 3.01
2014 2297 1.277557 GGCCGATATGAGCCTCATCTT 59.722 52.381 11.20 0.00 46.14 2.40
2015 2298 2.344950 GCCGATATGAGCCTCATCTTG 58.655 52.381 11.20 5.42 38.26 3.02
2025 2312 3.080319 AGCCTCATCTTGTTTGCTTCTC 58.920 45.455 0.00 0.00 0.00 2.87
2056 2344 0.319083 ACGATACGGTTGACTTGGCA 59.681 50.000 0.00 0.00 0.00 4.92
2065 2353 2.238521 GTTGACTTGGCAAGATCCCAA 58.761 47.619 32.50 23.43 39.91 4.12
2091 2379 6.998968 TTCTAGTACTGCTAGTGTAGTTCC 57.001 41.667 5.39 0.66 45.65 3.62
2094 2382 5.838531 AGTACTGCTAGTGTAGTTCCATC 57.161 43.478 0.00 0.00 39.73 3.51
2099 2387 2.034812 GCTAGTGTAGTTCCATCCCTCG 59.965 54.545 0.00 0.00 0.00 4.63
2158 2450 5.674569 GCTGTTTGTCACATGTACATGGATC 60.675 44.000 33.32 23.18 42.91 3.36
2159 2451 5.312079 TGTTTGTCACATGTACATGGATCA 58.688 37.500 33.32 24.99 42.91 2.92
2160 2452 5.181056 TGTTTGTCACATGTACATGGATCAC 59.819 40.000 33.32 23.74 42.91 3.06
2161 2453 3.872696 TGTCACATGTACATGGATCACC 58.127 45.455 33.32 17.90 42.91 4.02
2162 2454 3.519107 TGTCACATGTACATGGATCACCT 59.481 43.478 33.32 12.94 42.91 4.00
2163 2455 4.122776 GTCACATGTACATGGATCACCTC 58.877 47.826 33.32 14.42 42.91 3.85
2164 2456 3.126073 CACATGTACATGGATCACCTCG 58.874 50.000 33.32 10.27 42.91 4.63
2165 2457 2.138320 CATGTACATGGATCACCTCGC 58.862 52.381 25.41 0.00 35.24 5.03
2166 2458 1.190643 TGTACATGGATCACCTCGCA 58.809 50.000 0.00 0.00 37.04 5.10
2167 2459 1.552792 TGTACATGGATCACCTCGCAA 59.447 47.619 0.00 0.00 37.04 4.85
2168 2460 2.027653 TGTACATGGATCACCTCGCAAA 60.028 45.455 0.00 0.00 37.04 3.68
2169 2461 2.198827 ACATGGATCACCTCGCAAAA 57.801 45.000 0.00 0.00 37.04 2.44
2170 2462 2.513753 ACATGGATCACCTCGCAAAAA 58.486 42.857 0.00 0.00 37.04 1.94
2199 2491 4.142600 GGTACATGGATCAAGAGTTTGTGC 60.143 45.833 0.00 0.00 35.73 4.57
2238 2530 5.888691 TGAAATGTGCTTAATTCGCCTTA 57.111 34.783 0.00 0.00 0.00 2.69
2251 2543 9.796120 CTTAATTCGCCTTAAATTTGGAACATA 57.204 29.630 0.00 0.00 39.30 2.29
2304 3515 0.881118 TTGAATTGAGCGGGCAACTC 59.119 50.000 0.00 0.00 34.62 3.01
2363 3574 8.402798 AGAATCATGTCAGATAGTACTAGGTG 57.597 38.462 8.85 8.15 0.00 4.00
2371 3582 0.754217 TAGTACTAGGTGGCTGGCCG 60.754 60.000 7.14 0.00 39.42 6.13
2385 3596 0.683973 TGGCCGGATTGTTTTTGCAT 59.316 45.000 5.05 0.00 0.00 3.96
2472 3683 8.608185 AAATTATAATCAGGTTTGTGGACCAT 57.392 30.769 0.00 0.00 42.35 3.55
2482 3693 2.426842 TGTGGACCATCACAAACACA 57.573 45.000 0.00 0.00 43.70 3.72
2483 3694 2.942804 TGTGGACCATCACAAACACAT 58.057 42.857 0.00 0.00 43.70 3.21
2503 3714 2.411701 GCGAATAAAAGGCGCCCC 59.588 61.111 26.15 0.00 44.55 5.80
2514 3725 3.670377 GCGCCCCAACCAAGACAC 61.670 66.667 0.00 0.00 0.00 3.67
2520 3731 1.956477 CCCCAACCAAGACACTGAAAG 59.044 52.381 0.00 0.00 42.29 2.62
2543 3754 3.990959 ACAAGAAAGAGATCAGGGTCC 57.009 47.619 0.00 0.00 0.00 4.46
2546 3757 2.758130 AGAAAGAGATCAGGGTCCCTC 58.242 52.381 7.76 0.00 0.00 4.30
2547 3758 2.045047 AGAAAGAGATCAGGGTCCCTCA 59.955 50.000 7.76 0.00 0.00 3.86
2548 3759 2.649742 AAGAGATCAGGGTCCCTCAA 57.350 50.000 7.76 0.00 0.00 3.02
2549 3760 2.173126 AGAGATCAGGGTCCCTCAAG 57.827 55.000 7.76 0.00 0.00 3.02
2550 3761 1.127343 GAGATCAGGGTCCCTCAAGG 58.873 60.000 7.76 0.00 0.00 3.61
2551 3762 0.419459 AGATCAGGGTCCCTCAAGGT 59.581 55.000 7.76 0.00 36.75 3.50
2552 3763 0.833949 GATCAGGGTCCCTCAAGGTC 59.166 60.000 7.76 0.00 36.75 3.85
2553 3764 0.621862 ATCAGGGTCCCTCAAGGTCC 60.622 60.000 7.76 0.00 42.75 4.46
2554 3765 1.538876 CAGGGTCCCTCAAGGTCCA 60.539 63.158 7.76 0.00 45.11 4.02
2555 3766 1.133809 CAGGGTCCCTCAAGGTCCAA 61.134 60.000 7.76 0.00 45.11 3.53
2556 3767 1.134438 AGGGTCCCTCAAGGTCCAAC 61.134 60.000 3.85 0.00 45.11 3.77
2557 3768 1.003718 GGTCCCTCAAGGTCCAACG 60.004 63.158 0.00 0.00 42.97 4.10
2558 3769 1.671379 GTCCCTCAAGGTCCAACGC 60.671 63.158 0.00 0.00 36.75 4.84
2559 3770 2.144078 TCCCTCAAGGTCCAACGCA 61.144 57.895 0.00 0.00 36.75 5.24
2560 3771 1.966451 CCCTCAAGGTCCAACGCAC 60.966 63.158 0.00 0.00 0.00 5.34
2561 3772 1.071471 CCTCAAGGTCCAACGCACT 59.929 57.895 0.00 0.00 0.00 4.40
2562 3773 0.535102 CCTCAAGGTCCAACGCACTT 60.535 55.000 0.00 0.00 0.00 3.16
2563 3774 0.868406 CTCAAGGTCCAACGCACTTC 59.132 55.000 0.00 0.00 0.00 3.01
2564 3775 0.534203 TCAAGGTCCAACGCACTTCC 60.534 55.000 0.00 0.00 0.00 3.46
2565 3776 0.817634 CAAGGTCCAACGCACTTCCA 60.818 55.000 0.00 0.00 0.00 3.53
2566 3777 0.106918 AAGGTCCAACGCACTTCCAA 60.107 50.000 0.00 0.00 0.00 3.53
2567 3778 0.535102 AGGTCCAACGCACTTCCAAG 60.535 55.000 0.00 0.00 0.00 3.61
2568 3779 0.534203 GGTCCAACGCACTTCCAAGA 60.534 55.000 0.00 0.00 0.00 3.02
2569 3780 0.586802 GTCCAACGCACTTCCAAGAC 59.413 55.000 0.00 0.00 0.00 3.01
2570 3781 0.534203 TCCAACGCACTTCCAAGACC 60.534 55.000 0.00 0.00 0.00 3.85
2571 3782 1.515521 CCAACGCACTTCCAAGACCC 61.516 60.000 0.00 0.00 0.00 4.46
2572 3783 0.817634 CAACGCACTTCCAAGACCCA 60.818 55.000 0.00 0.00 0.00 4.51
2573 3784 0.106918 AACGCACTTCCAAGACCCAA 60.107 50.000 0.00 0.00 0.00 4.12
2574 3785 0.106918 ACGCACTTCCAAGACCCAAA 60.107 50.000 0.00 0.00 0.00 3.28
2575 3786 1.028905 CGCACTTCCAAGACCCAAAA 58.971 50.000 0.00 0.00 0.00 2.44
2576 3787 1.001378 CGCACTTCCAAGACCCAAAAG 60.001 52.381 0.00 0.00 0.00 2.27
2577 3788 1.341209 GCACTTCCAAGACCCAAAAGG 59.659 52.381 0.00 0.00 43.78 3.11
2578 3789 1.341209 CACTTCCAAGACCCAAAAGGC 59.659 52.381 0.00 0.00 40.58 4.35
2579 3790 1.063266 ACTTCCAAGACCCAAAAGGCA 60.063 47.619 0.00 0.00 40.58 4.75
2580 3791 2.250924 CTTCCAAGACCCAAAAGGCAT 58.749 47.619 0.00 0.00 40.58 4.40
2581 3792 1.923356 TCCAAGACCCAAAAGGCATC 58.077 50.000 0.00 0.00 40.58 3.91
2582 3793 0.527565 CCAAGACCCAAAAGGCATCG 59.472 55.000 0.00 0.00 40.58 3.84
2583 3794 0.527565 CAAGACCCAAAAGGCATCGG 59.472 55.000 0.00 0.00 40.58 4.18
2584 3795 0.404040 AAGACCCAAAAGGCATCGGA 59.596 50.000 0.00 0.00 40.58 4.55
2585 3796 0.035056 AGACCCAAAAGGCATCGGAG 60.035 55.000 0.00 0.00 40.58 4.63
2586 3797 1.000896 ACCCAAAAGGCATCGGAGG 60.001 57.895 0.00 0.00 40.58 4.30
2587 3798 2.418083 CCCAAAAGGCATCGGAGGC 61.418 63.158 6.01 6.01 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.906008 CCGTTTCAAATTACTTGTCGCAG 59.094 43.478 0.00 0.00 36.34 5.18
1 2 3.560481 TCCGTTTCAAATTACTTGTCGCA 59.440 39.130 0.00 0.00 36.34 5.10
2 3 4.084223 TCTCCGTTTCAAATTACTTGTCGC 60.084 41.667 0.00 0.00 36.34 5.19
3 4 5.404366 TCTCTCCGTTTCAAATTACTTGTCG 59.596 40.000 0.00 0.00 36.34 4.35
4 5 6.424207 ACTCTCTCCGTTTCAAATTACTTGTC 59.576 38.462 0.00 0.00 36.34 3.18
5 6 6.289064 ACTCTCTCCGTTTCAAATTACTTGT 58.711 36.000 0.00 0.00 36.34 3.16
6 7 6.787085 ACTCTCTCCGTTTCAAATTACTTG 57.213 37.500 0.00 0.00 36.25 3.16
7 8 7.668492 AGTACTCTCTCCGTTTCAAATTACTT 58.332 34.615 0.00 0.00 0.00 2.24
8 9 7.229581 AGTACTCTCTCCGTTTCAAATTACT 57.770 36.000 0.00 0.00 0.00 2.24
9 10 7.813627 AGAAGTACTCTCTCCGTTTCAAATTAC 59.186 37.037 0.00 0.00 0.00 1.89
10 11 7.893658 AGAAGTACTCTCTCCGTTTCAAATTA 58.106 34.615 0.00 0.00 0.00 1.40
11 12 6.760291 AGAAGTACTCTCTCCGTTTCAAATT 58.240 36.000 0.00 0.00 0.00 1.82
12 13 6.347859 AGAAGTACTCTCTCCGTTTCAAAT 57.652 37.500 0.00 0.00 0.00 2.32
13 14 5.786264 AGAAGTACTCTCTCCGTTTCAAA 57.214 39.130 0.00 0.00 0.00 2.69
14 15 5.786264 AAGAAGTACTCTCTCCGTTTCAA 57.214 39.130 0.00 0.00 31.02 2.69
15 16 5.786264 AAAGAAGTACTCTCTCCGTTTCA 57.214 39.130 0.00 0.00 31.02 2.69
16 17 5.794448 CGTAAAGAAGTACTCTCTCCGTTTC 59.206 44.000 0.00 0.00 31.02 2.78
17 18 5.335504 CCGTAAAGAAGTACTCTCTCCGTTT 60.336 44.000 0.00 0.00 31.02 3.60
18 19 4.155644 CCGTAAAGAAGTACTCTCTCCGTT 59.844 45.833 0.00 0.00 31.02 4.44
19 20 3.688673 CCGTAAAGAAGTACTCTCTCCGT 59.311 47.826 0.00 0.00 31.02 4.69
20 21 3.065095 CCCGTAAAGAAGTACTCTCTCCG 59.935 52.174 0.00 5.60 31.02 4.63
21 22 3.181488 GCCCGTAAAGAAGTACTCTCTCC 60.181 52.174 0.00 0.00 31.02 3.71
22 23 3.442977 TGCCCGTAAAGAAGTACTCTCTC 59.557 47.826 0.00 0.00 31.02 3.20
23 24 3.428532 TGCCCGTAAAGAAGTACTCTCT 58.571 45.455 0.00 0.00 31.02 3.10
24 25 3.429135 CCTGCCCGTAAAGAAGTACTCTC 60.429 52.174 0.00 0.00 31.02 3.20
25 26 2.496470 CCTGCCCGTAAAGAAGTACTCT 59.504 50.000 0.00 0.00 35.13 3.24
26 27 2.418334 CCCTGCCCGTAAAGAAGTACTC 60.418 54.545 0.00 0.00 0.00 2.59
27 28 1.553704 CCCTGCCCGTAAAGAAGTACT 59.446 52.381 0.00 0.00 0.00 2.73
28 29 1.406477 CCCCTGCCCGTAAAGAAGTAC 60.406 57.143 0.00 0.00 0.00 2.73
29 30 0.906775 CCCCTGCCCGTAAAGAAGTA 59.093 55.000 0.00 0.00 0.00 2.24
30 31 0.838987 TCCCCTGCCCGTAAAGAAGT 60.839 55.000 0.00 0.00 0.00 3.01
31 32 0.107654 CTCCCCTGCCCGTAAAGAAG 60.108 60.000 0.00 0.00 0.00 2.85
32 33 1.559065 CCTCCCCTGCCCGTAAAGAA 61.559 60.000 0.00 0.00 0.00 2.52
33 34 1.993391 CCTCCCCTGCCCGTAAAGA 60.993 63.158 0.00 0.00 0.00 2.52
34 35 2.590092 CCTCCCCTGCCCGTAAAG 59.410 66.667 0.00 0.00 0.00 1.85
35 36 3.012722 CCCTCCCCTGCCCGTAAA 61.013 66.667 0.00 0.00 0.00 2.01
36 37 3.995809 CTCCCTCCCCTGCCCGTAA 62.996 68.421 0.00 0.00 0.00 3.18
37 38 4.475444 CTCCCTCCCCTGCCCGTA 62.475 72.222 0.00 0.00 0.00 4.02
83 84 3.673484 AAGTGGGCACGTGCATGC 61.673 61.111 38.60 26.51 45.34 4.06
84 85 2.256158 CAAGTGGGCACGTGCATG 59.744 61.111 38.60 24.24 44.36 4.06
128 129 1.893062 CACAGCACAGGAGATCCGA 59.107 57.895 0.00 0.00 42.08 4.55
172 173 4.792804 GGAGCCAGCCAGTCAGCC 62.793 72.222 0.00 0.00 0.00 4.85
173 174 3.341202 ATGGAGCCAGCCAGTCAGC 62.341 63.158 0.00 0.00 42.15 4.26
174 175 1.153208 GATGGAGCCAGCCAGTCAG 60.153 63.158 0.00 0.00 42.15 3.51
175 176 2.993008 GATGGAGCCAGCCAGTCA 59.007 61.111 0.00 0.00 42.15 3.41
176 177 2.202987 CGATGGAGCCAGCCAGTC 60.203 66.667 0.00 0.00 42.15 3.51
177 178 4.479993 GCGATGGAGCCAGCCAGT 62.480 66.667 0.00 0.00 42.15 4.00
207 208 1.654220 CTGAACCAACCAAGCACGG 59.346 57.895 0.00 0.00 0.00 4.94
212 213 4.301628 GAAATCAAGCTGAACCAACCAAG 58.698 43.478 0.00 0.00 0.00 3.61
214 215 2.627699 GGAAATCAAGCTGAACCAACCA 59.372 45.455 0.00 0.00 0.00 3.67
216 217 2.627699 TGGGAAATCAAGCTGAACCAAC 59.372 45.455 0.00 0.00 0.00 3.77
217 218 2.956132 TGGGAAATCAAGCTGAACCAA 58.044 42.857 0.00 0.00 0.00 3.67
218 219 2.673775 TGGGAAATCAAGCTGAACCA 57.326 45.000 0.00 0.00 0.00 3.67
220 221 2.167075 CCCATGGGAAATCAAGCTGAAC 59.833 50.000 28.27 0.00 37.50 3.18
221 222 2.459644 CCCATGGGAAATCAAGCTGAA 58.540 47.619 28.27 0.00 37.50 3.02
222 223 1.961435 GCCCATGGGAAATCAAGCTGA 60.961 52.381 36.00 0.00 37.50 4.26
223 224 0.462789 GCCCATGGGAAATCAAGCTG 59.537 55.000 36.00 3.15 37.50 4.24
224 225 1.039233 CGCCCATGGGAAATCAAGCT 61.039 55.000 36.00 0.00 37.50 3.74
232 233 4.440829 GGAAGCCGCCCATGGGAA 62.441 66.667 36.00 0.00 37.50 3.97
250 251 1.529010 CACAAGGGCTGCTGGAACA 60.529 57.895 0.00 0.00 0.00 3.18
254 255 1.529010 TTCACACAAGGGCTGCTGG 60.529 57.895 0.00 0.00 0.00 4.85
281 287 8.484641 TTTCTATGCAGAAGAGAAGTACAATG 57.515 34.615 0.00 0.00 41.75 2.82
293 299 6.956202 ATCCCAGATTTTTCTATGCAGAAG 57.044 37.500 0.00 0.00 41.75 2.85
294 300 7.833682 TGTAATCCCAGATTTTTCTATGCAGAA 59.166 33.333 0.00 0.00 39.06 3.02
296 302 7.572523 TGTAATCCCAGATTTTTCTATGCAG 57.427 36.000 0.00 0.00 0.00 4.41
297 303 7.615365 ACTTGTAATCCCAGATTTTTCTATGCA 59.385 33.333 0.00 0.00 0.00 3.96
298 304 7.917505 CACTTGTAATCCCAGATTTTTCTATGC 59.082 37.037 0.00 0.00 0.00 3.14
299 305 7.917505 GCACTTGTAATCCCAGATTTTTCTATG 59.082 37.037 0.00 0.00 0.00 2.23
301 307 7.121168 CAGCACTTGTAATCCCAGATTTTTCTA 59.879 37.037 0.00 0.00 0.00 2.10
302 308 6.012745 AGCACTTGTAATCCCAGATTTTTCT 58.987 36.000 0.00 0.00 0.00 2.52
303 309 6.095377 CAGCACTTGTAATCCCAGATTTTTC 58.905 40.000 0.00 0.00 0.00 2.29
304 310 5.047092 CCAGCACTTGTAATCCCAGATTTTT 60.047 40.000 0.00 0.00 0.00 1.94
305 311 4.463891 CCAGCACTTGTAATCCCAGATTTT 59.536 41.667 0.00 0.00 0.00 1.82
310 316 2.496899 ACCAGCACTTGTAATCCCAG 57.503 50.000 0.00 0.00 0.00 4.45
311 317 3.055385 GTCTACCAGCACTTGTAATCCCA 60.055 47.826 0.00 0.00 0.00 4.37
312 318 3.055385 TGTCTACCAGCACTTGTAATCCC 60.055 47.826 0.00 0.00 0.00 3.85
314 320 6.019801 CGTTATGTCTACCAGCACTTGTAATC 60.020 42.308 0.00 0.00 0.00 1.75
315 321 5.810587 CGTTATGTCTACCAGCACTTGTAAT 59.189 40.000 0.00 0.00 0.00 1.89
316 322 5.165676 CGTTATGTCTACCAGCACTTGTAA 58.834 41.667 0.00 0.00 0.00 2.41
317 323 4.219070 ACGTTATGTCTACCAGCACTTGTA 59.781 41.667 0.00 0.00 0.00 2.41
318 324 3.006537 ACGTTATGTCTACCAGCACTTGT 59.993 43.478 0.00 0.00 0.00 3.16
319 325 3.367932 CACGTTATGTCTACCAGCACTTG 59.632 47.826 0.00 0.00 0.00 3.16
320 326 3.006537 ACACGTTATGTCTACCAGCACTT 59.993 43.478 0.00 0.00 36.54 3.16
321 327 2.561419 ACACGTTATGTCTACCAGCACT 59.439 45.455 0.00 0.00 36.54 4.40
322 328 2.955614 ACACGTTATGTCTACCAGCAC 58.044 47.619 0.00 0.00 36.54 4.40
323 329 3.006003 TCAACACGTTATGTCTACCAGCA 59.994 43.478 0.00 0.00 42.31 4.41
324 330 3.581755 TCAACACGTTATGTCTACCAGC 58.418 45.455 0.00 0.00 42.31 4.85
325 331 7.033791 ACTATTCAACACGTTATGTCTACCAG 58.966 38.462 0.00 0.00 42.31 4.00
326 332 6.927416 ACTATTCAACACGTTATGTCTACCA 58.073 36.000 0.00 0.00 42.31 3.25
327 333 7.543172 TGAACTATTCAACACGTTATGTCTACC 59.457 37.037 0.00 0.00 42.31 3.18
328 334 8.456904 TGAACTATTCAACACGTTATGTCTAC 57.543 34.615 0.00 0.00 42.31 2.59
329 335 9.135843 CTTGAACTATTCAACACGTTATGTCTA 57.864 33.333 0.00 0.00 44.21 2.59
330 336 7.870954 TCTTGAACTATTCAACACGTTATGTCT 59.129 33.333 0.00 0.00 44.21 3.41
331 337 8.014322 TCTTGAACTATTCAACACGTTATGTC 57.986 34.615 0.00 0.00 44.21 3.06
332 338 7.956420 TCTTGAACTATTCAACACGTTATGT 57.044 32.000 0.00 0.00 44.21 2.29
333 339 7.426456 GCATCTTGAACTATTCAACACGTTATG 59.574 37.037 0.00 0.00 44.21 1.90
334 340 7.334421 AGCATCTTGAACTATTCAACACGTTAT 59.666 33.333 0.00 0.00 44.21 1.89
351 357 0.671472 CACACAGGCGAGCATCTTGA 60.671 55.000 0.00 0.00 0.00 3.02
352 358 1.642037 CCACACAGGCGAGCATCTTG 61.642 60.000 0.00 0.00 0.00 3.02
354 360 2.267006 CCACACAGGCGAGCATCT 59.733 61.111 0.00 0.00 0.00 2.90
355 361 2.803155 TTCCCACACAGGCGAGCATC 62.803 60.000 0.00 0.00 35.39 3.91
357 363 2.410322 ATTTCCCACACAGGCGAGCA 62.410 55.000 0.00 0.00 35.39 4.26
359 365 0.804989 GAATTTCCCACACAGGCGAG 59.195 55.000 0.00 0.00 35.39 5.03
361 367 1.501741 CGAATTTCCCACACAGGCG 59.498 57.895 0.00 0.00 35.39 5.52
362 368 1.595093 CCCGAATTTCCCACACAGGC 61.595 60.000 0.00 0.00 35.39 4.85
364 370 0.037590 TCCCCGAATTTCCCACACAG 59.962 55.000 0.00 0.00 0.00 3.66
365 371 0.701731 ATCCCCGAATTTCCCACACA 59.298 50.000 0.00 0.00 0.00 3.72
366 372 1.102978 CATCCCCGAATTTCCCACAC 58.897 55.000 0.00 0.00 0.00 3.82
367 373 0.995803 TCATCCCCGAATTTCCCACA 59.004 50.000 0.00 0.00 0.00 4.17
369 375 4.105537 TCATTATCATCCCCGAATTTCCCA 59.894 41.667 0.00 0.00 0.00 4.37
370 376 4.662278 TCATTATCATCCCCGAATTTCCC 58.338 43.478 0.00 0.00 0.00 3.97
371 377 6.094603 CAGATCATTATCATCCCCGAATTTCC 59.905 42.308 0.00 0.00 34.28 3.13
373 379 6.432162 CACAGATCATTATCATCCCCGAATTT 59.568 38.462 0.00 0.00 34.28 1.82
374 380 5.942236 CACAGATCATTATCATCCCCGAATT 59.058 40.000 0.00 0.00 34.28 2.17
376 382 4.347876 ACACAGATCATTATCATCCCCGAA 59.652 41.667 0.00 0.00 34.28 4.30
379 385 6.169094 CAGTACACAGATCATTATCATCCCC 58.831 44.000 0.00 0.00 34.28 4.81
395 401 7.494298 CCACAACTTGCATATATACAGTACACA 59.506 37.037 0.00 0.00 0.00 3.72
399 405 5.694458 CGCCACAACTTGCATATATACAGTA 59.306 40.000 0.00 0.00 0.00 2.74
400 406 4.511454 CGCCACAACTTGCATATATACAGT 59.489 41.667 0.00 0.00 0.00 3.55
402 408 3.812609 CCGCCACAACTTGCATATATACA 59.187 43.478 0.00 0.00 0.00 2.29
403 409 3.364964 GCCGCCACAACTTGCATATATAC 60.365 47.826 0.00 0.00 0.00 1.47
404 410 2.811431 GCCGCCACAACTTGCATATATA 59.189 45.455 0.00 0.00 0.00 0.86
405 411 1.608590 GCCGCCACAACTTGCATATAT 59.391 47.619 0.00 0.00 0.00 0.86
406 412 1.021202 GCCGCCACAACTTGCATATA 58.979 50.000 0.00 0.00 0.00 0.86
407 413 1.809207 GCCGCCACAACTTGCATAT 59.191 52.632 0.00 0.00 0.00 1.78
408 414 2.685829 CGCCGCCACAACTTGCATA 61.686 57.895 0.00 0.00 0.00 3.14
409 415 4.041917 CGCCGCCACAACTTGCAT 62.042 61.111 0.00 0.00 0.00 3.96
423 429 3.496884 TGACTAAACAAGATGACAACGCC 59.503 43.478 0.00 0.00 0.00 5.68
427 433 5.048782 GCACCATGACTAAACAAGATGACAA 60.049 40.000 0.00 0.00 0.00 3.18
428 434 4.455533 GCACCATGACTAAACAAGATGACA 59.544 41.667 0.00 0.00 0.00 3.58
429 435 4.455533 TGCACCATGACTAAACAAGATGAC 59.544 41.667 0.00 0.00 0.00 3.06
430 436 4.650734 TGCACCATGACTAAACAAGATGA 58.349 39.130 0.00 0.00 0.00 2.92
431 437 5.106038 ACATGCACCATGACTAAACAAGATG 60.106 40.000 11.78 0.00 43.81 2.90
432 438 5.012239 ACATGCACCATGACTAAACAAGAT 58.988 37.500 11.78 0.00 43.81 2.40
433 439 4.216042 CACATGCACCATGACTAAACAAGA 59.784 41.667 11.78 0.00 43.81 3.02
435 441 4.140536 TCACATGCACCATGACTAAACAA 58.859 39.130 11.78 0.00 43.81 2.83
437 443 3.753272 ACTCACATGCACCATGACTAAAC 59.247 43.478 11.78 0.00 43.81 2.01
438 444 3.752747 CACTCACATGCACCATGACTAAA 59.247 43.478 11.78 0.00 43.81 1.85
440 446 2.566724 TCACTCACATGCACCATGACTA 59.433 45.455 11.78 0.00 43.81 2.59
441 447 1.348696 TCACTCACATGCACCATGACT 59.651 47.619 11.78 0.00 43.81 3.41
442 448 1.812235 TCACTCACATGCACCATGAC 58.188 50.000 11.78 0.00 43.81 3.06
443 449 2.361789 CATCACTCACATGCACCATGA 58.638 47.619 11.78 0.00 43.81 3.07
444 450 1.202256 GCATCACTCACATGCACCATG 60.202 52.381 3.80 3.80 45.19 3.66
445 451 1.100510 GCATCACTCACATGCACCAT 58.899 50.000 0.00 0.00 45.19 3.55
446 452 2.558617 GCATCACTCACATGCACCA 58.441 52.632 0.00 0.00 45.19 4.17
457 658 2.254546 TGTCGAACCTTTGCATCACT 57.745 45.000 0.00 0.00 0.00 3.41
458 659 3.236816 CAATGTCGAACCTTTGCATCAC 58.763 45.455 0.00 0.00 0.00 3.06
459 660 2.351641 GCAATGTCGAACCTTTGCATCA 60.352 45.455 16.77 0.00 42.13 3.07
460 661 2.253603 GCAATGTCGAACCTTTGCATC 58.746 47.619 16.77 0.00 42.13 3.91
461 662 1.612950 TGCAATGTCGAACCTTTGCAT 59.387 42.857 19.11 1.76 45.16 3.96
468 670 2.213499 CCTAGGATGCAATGTCGAACC 58.787 52.381 1.05 0.00 0.00 3.62
476 678 6.521527 AATTTAGGAGACCTAGGATGCAAT 57.478 37.500 17.98 3.27 37.42 3.56
478 680 5.684704 CAAATTTAGGAGACCTAGGATGCA 58.315 41.667 17.98 0.00 37.42 3.96
483 685 5.440610 ACATGCAAATTTAGGAGACCTAGG 58.559 41.667 7.41 7.41 37.42 3.02
484 686 6.115446 TGACATGCAAATTTAGGAGACCTAG 58.885 40.000 0.00 0.00 37.42 3.02
485 687 6.061022 TGACATGCAAATTTAGGAGACCTA 57.939 37.500 0.00 0.00 34.61 3.08
486 688 4.922206 TGACATGCAAATTTAGGAGACCT 58.078 39.130 0.00 0.00 37.71 3.85
487 689 5.643379 TTGACATGCAAATTTAGGAGACC 57.357 39.130 0.00 0.00 32.46 3.85
488 690 7.008628 CGAAATTGACATGCAAATTTAGGAGAC 59.991 37.037 15.28 5.33 40.48 3.36
489 691 7.028962 CGAAATTGACATGCAAATTTAGGAGA 58.971 34.615 15.28 0.00 40.48 3.71
490 692 6.808212 ACGAAATTGACATGCAAATTTAGGAG 59.192 34.615 20.52 14.05 40.48 3.69
492 694 6.949578 ACGAAATTGACATGCAAATTTAGG 57.050 33.333 20.52 15.98 40.48 2.69
493 695 8.586273 CCTTACGAAATTGACATGCAAATTTAG 58.414 33.333 15.28 16.47 40.48 1.85
494 696 8.300286 TCCTTACGAAATTGACATGCAAATTTA 58.700 29.630 15.28 2.63 40.48 1.40
495 697 7.151308 TCCTTACGAAATTGACATGCAAATTT 58.849 30.769 15.25 15.25 40.48 1.82
496 698 6.686630 TCCTTACGAAATTGACATGCAAATT 58.313 32.000 6.65 5.13 40.48 1.82
497 699 6.266168 TCCTTACGAAATTGACATGCAAAT 57.734 33.333 6.65 0.00 40.48 2.32
498 700 5.697473 TCCTTACGAAATTGACATGCAAA 57.303 34.783 6.65 0.00 40.48 3.68
499 701 5.639757 CATCCTTACGAAATTGACATGCAA 58.360 37.500 0.00 5.27 41.53 4.08
501 703 4.037690 GCATCCTTACGAAATTGACATGC 58.962 43.478 0.00 0.00 0.00 4.06
502 704 5.268544 CAGCATCCTTACGAAATTGACATG 58.731 41.667 0.00 0.00 0.00 3.21
504 706 3.126858 GCAGCATCCTTACGAAATTGACA 59.873 43.478 0.00 0.00 0.00 3.58
505 707 3.126858 TGCAGCATCCTTACGAAATTGAC 59.873 43.478 0.00 0.00 0.00 3.18
506 708 3.342719 TGCAGCATCCTTACGAAATTGA 58.657 40.909 0.00 0.00 0.00 2.57
507 709 3.763097 TGCAGCATCCTTACGAAATTG 57.237 42.857 0.00 0.00 0.00 2.32
508 710 6.639632 AATATGCAGCATCCTTACGAAATT 57.360 33.333 12.38 0.00 0.00 1.82
509 711 6.639632 AAATATGCAGCATCCTTACGAAAT 57.360 33.333 12.38 0.00 0.00 2.17
510 712 6.765989 ACTAAATATGCAGCATCCTTACGAAA 59.234 34.615 12.38 0.00 0.00 3.46
511 713 6.288294 ACTAAATATGCAGCATCCTTACGAA 58.712 36.000 12.38 0.00 0.00 3.85
512 714 5.853936 ACTAAATATGCAGCATCCTTACGA 58.146 37.500 12.38 0.00 0.00 3.43
514 716 6.016777 AGCAACTAAATATGCAGCATCCTTAC 60.017 38.462 12.38 0.00 44.95 2.34
515 717 6.016860 CAGCAACTAAATATGCAGCATCCTTA 60.017 38.462 12.38 9.70 44.95 2.69
516 718 4.891756 AGCAACTAAATATGCAGCATCCTT 59.108 37.500 12.38 9.03 44.95 3.36
517 719 4.277672 CAGCAACTAAATATGCAGCATCCT 59.722 41.667 12.38 0.00 44.95 3.24
523 725 3.680642 ACGCAGCAACTAAATATGCAG 57.319 42.857 0.00 0.00 44.95 4.41
524 726 3.427368 CCAACGCAGCAACTAAATATGCA 60.427 43.478 0.00 0.00 44.95 3.96
525 727 3.108144 CCAACGCAGCAACTAAATATGC 58.892 45.455 0.00 0.00 42.87 3.14
526 728 4.332543 TCTCCAACGCAGCAACTAAATATG 59.667 41.667 0.00 0.00 0.00 1.78
527 729 4.332819 GTCTCCAACGCAGCAACTAAATAT 59.667 41.667 0.00 0.00 0.00 1.28
528 730 3.682858 GTCTCCAACGCAGCAACTAAATA 59.317 43.478 0.00 0.00 0.00 1.40
530 732 1.871039 GTCTCCAACGCAGCAACTAAA 59.129 47.619 0.00 0.00 0.00 1.85
531 733 1.508632 GTCTCCAACGCAGCAACTAA 58.491 50.000 0.00 0.00 0.00 2.24
534 736 2.551270 CGTCTCCAACGCAGCAAC 59.449 61.111 0.00 0.00 45.76 4.17
542 744 3.998672 TGACCGGCCGTCTCCAAC 61.999 66.667 26.12 7.37 42.49 3.77
543 745 3.998672 GTGACCGGCCGTCTCCAA 61.999 66.667 26.12 3.04 42.49 3.53
562 764 3.019564 CCCCTAAACAAATCAGCTCAGG 58.980 50.000 0.00 0.00 0.00 3.86
581 788 4.394712 CTGCCTCCGTGGTCACCC 62.395 72.222 0.00 0.00 38.35 4.61
817 1030 2.363795 CTGTGCCGGGTAGGAGGA 60.364 66.667 2.18 0.00 45.00 3.71
818 1031 2.363795 TCTGTGCCGGGTAGGAGG 60.364 66.667 2.18 0.00 45.00 4.30
819 1032 2.427245 CCTCTGTGCCGGGTAGGAG 61.427 68.421 2.18 2.17 45.00 3.69
820 1033 2.238319 ATCCTCTGTGCCGGGTAGGA 62.238 60.000 2.18 1.60 45.00 2.94
821 1034 1.749334 GATCCTCTGTGCCGGGTAGG 61.749 65.000 2.18 0.00 44.97 3.18
824 1037 3.461773 CGATCCTCTGTGCCGGGT 61.462 66.667 2.18 0.00 0.00 5.28
829 1042 1.068250 GCTACCCGATCCTCTGTGC 59.932 63.158 0.00 0.00 0.00 4.57
831 1044 0.259065 TGAGCTACCCGATCCTCTGT 59.741 55.000 0.00 0.00 0.00 3.41
906 1130 2.358125 CGTGGGTCGTGAATGGCA 60.358 61.111 0.00 0.00 34.52 4.92
919 1148 0.541863 ACTAGGAATGGAAGGCGTGG 59.458 55.000 0.00 0.00 0.00 4.94
935 1164 1.073284 GGCTGGAAGTTTGGGACACTA 59.927 52.381 0.00 0.00 34.09 2.74
938 1167 0.110486 GAGGCTGGAAGTTTGGGACA 59.890 55.000 0.00 0.00 35.30 4.02
939 1168 0.402121 AGAGGCTGGAAGTTTGGGAC 59.598 55.000 0.00 0.00 35.30 4.46
1005 1247 2.239400 CCATCGTCTCCACCATAGCTA 58.761 52.381 0.00 0.00 0.00 3.32
1258 1500 4.060900 CAAAAGATGGTGGATCGATCGAT 58.939 43.478 29.76 29.76 36.59 3.59
1272 1514 4.806640 ACCTTAACATGGCCAAAAGATG 57.193 40.909 10.96 5.42 0.00 2.90
1273 1515 5.071653 ACAAACCTTAACATGGCCAAAAGAT 59.928 36.000 10.96 0.00 0.00 2.40
1274 1516 4.407296 ACAAACCTTAACATGGCCAAAAGA 59.593 37.500 10.96 0.00 0.00 2.52
1275 1517 4.511082 CACAAACCTTAACATGGCCAAAAG 59.489 41.667 10.96 11.36 0.00 2.27
1276 1518 4.446371 CACAAACCTTAACATGGCCAAAA 58.554 39.130 10.96 0.78 0.00 2.44
1277 1519 3.742640 GCACAAACCTTAACATGGCCAAA 60.743 43.478 10.96 0.00 0.00 3.28
1278 1520 2.224161 GCACAAACCTTAACATGGCCAA 60.224 45.455 10.96 0.00 0.00 4.52
1279 1521 1.342819 GCACAAACCTTAACATGGCCA 59.657 47.619 8.56 8.56 0.00 5.36
1280 1522 1.342819 TGCACAAACCTTAACATGGCC 59.657 47.619 0.00 0.00 0.00 5.36
1306 1558 2.567470 ATATACATGCATGCGCGCGC 62.567 55.000 45.02 45.02 42.97 6.86
1307 1559 0.854445 CATATACATGCATGCGCGCG 60.854 55.000 28.44 28.44 42.97 6.86
1308 1560 2.920640 CATATACATGCATGCGCGC 58.079 52.632 27.26 27.26 42.97 6.86
1594 1860 0.676466 CTCACCTGCGGCACCAAATA 60.676 55.000 0.00 0.00 0.00 1.40
1614 1880 2.554032 CCTGTGAGACTTTTGGCGAATT 59.446 45.455 0.00 0.00 0.00 2.17
1700 1969 5.272167 TCAACCACATATCGTTCGTTTTC 57.728 39.130 0.00 0.00 0.00 2.29
1712 1981 5.042463 TCAGGTCAAACTTCAACCACATA 57.958 39.130 0.00 0.00 35.43 2.29
1768 2037 7.703058 AGATCTGAAACGGGATAAACATTTT 57.297 32.000 0.00 0.00 0.00 1.82
1794 2063 3.058224 TCAGATCATATCTACACGCACCG 60.058 47.826 0.00 0.00 37.58 4.94
1798 2067 5.127693 AGGTTCAGATCATATCTACACGC 57.872 43.478 0.00 0.00 37.58 5.34
1871 2146 0.872021 AGAATCGCGCCATCGTCTTC 60.872 55.000 0.00 0.00 38.14 2.87
1872 2147 1.141881 AGAATCGCGCCATCGTCTT 59.858 52.632 0.00 0.00 38.14 3.01
1873 2148 1.589993 CAGAATCGCGCCATCGTCT 60.590 57.895 0.00 0.00 38.14 4.18
1874 2149 1.588932 TCAGAATCGCGCCATCGTC 60.589 57.895 0.00 0.00 38.14 4.20
1875 2150 1.878522 GTCAGAATCGCGCCATCGT 60.879 57.895 0.00 0.00 38.14 3.73
1876 2151 2.920964 CGTCAGAATCGCGCCATCG 61.921 63.158 0.00 0.00 39.07 3.84
1877 2152 1.543941 CTCGTCAGAATCGCGCCATC 61.544 60.000 0.00 0.00 0.00 3.51
1878 2153 1.589993 CTCGTCAGAATCGCGCCAT 60.590 57.895 0.00 0.00 0.00 4.40
1879 2154 2.202610 CTCGTCAGAATCGCGCCA 60.203 61.111 0.00 0.00 0.00 5.69
1880 2155 2.956964 CCTCGTCAGAATCGCGCC 60.957 66.667 0.00 0.00 0.00 6.53
1881 2156 3.621394 GCCTCGTCAGAATCGCGC 61.621 66.667 0.00 0.00 0.00 6.86
1882 2157 2.956964 GGCCTCGTCAGAATCGCG 60.957 66.667 0.00 0.00 0.00 5.87
1883 2158 1.227380 ATGGCCTCGTCAGAATCGC 60.227 57.895 3.32 0.00 0.00 4.58
1925 2208 2.417516 CGCCGGTCGATCTTGGAT 59.582 61.111 12.11 0.00 41.67 3.41
1926 2209 3.066190 ACGCCGGTCGATCTTGGA 61.066 61.111 22.10 0.00 41.67 3.53
1976 2259 9.747898 ATATCGGCCAAACTATATTTTTATCCA 57.252 29.630 2.24 0.00 0.00 3.41
2056 2344 7.863901 AGCAGTACTAGAATATTGGGATCTT 57.136 36.000 0.00 0.00 0.00 2.40
2091 2379 0.032678 CCAAGGATCGACGAGGGATG 59.967 60.000 3.01 0.30 0.00 3.51
2094 2382 1.614241 AACCCAAGGATCGACGAGGG 61.614 60.000 15.57 15.57 42.07 4.30
2099 2387 1.486726 AGATGGAACCCAAGGATCGAC 59.513 52.381 0.00 0.00 36.95 4.20
2171 2463 7.287696 ACAAACTCTTGATCCATGTACCTTTTT 59.712 33.333 0.00 0.00 36.33 1.94
2172 2464 6.777580 ACAAACTCTTGATCCATGTACCTTTT 59.222 34.615 0.00 0.00 36.33 2.27
2173 2465 6.207417 CACAAACTCTTGATCCATGTACCTTT 59.793 38.462 0.00 0.00 36.33 3.11
2174 2466 5.707298 CACAAACTCTTGATCCATGTACCTT 59.293 40.000 0.00 0.00 36.33 3.50
2175 2467 5.248640 CACAAACTCTTGATCCATGTACCT 58.751 41.667 0.00 0.00 36.33 3.08
2176 2468 4.142600 GCACAAACTCTTGATCCATGTACC 60.143 45.833 0.00 0.00 36.33 3.34
2177 2469 4.455533 TGCACAAACTCTTGATCCATGTAC 59.544 41.667 0.00 0.00 36.33 2.90
2178 2470 4.455533 GTGCACAAACTCTTGATCCATGTA 59.544 41.667 13.17 0.00 36.33 2.29
2179 2471 3.254166 GTGCACAAACTCTTGATCCATGT 59.746 43.478 13.17 0.00 36.33 3.21
2180 2472 3.366679 GGTGCACAAACTCTTGATCCATG 60.367 47.826 20.43 0.00 36.33 3.66
2181 2473 2.821969 GGTGCACAAACTCTTGATCCAT 59.178 45.455 20.43 0.00 36.33 3.41
2182 2474 2.158623 AGGTGCACAAACTCTTGATCCA 60.159 45.455 20.43 0.00 36.33 3.41
2183 2475 2.485814 GAGGTGCACAAACTCTTGATCC 59.514 50.000 20.43 0.00 36.33 3.36
2184 2476 2.485814 GGAGGTGCACAAACTCTTGATC 59.514 50.000 20.43 0.00 36.33 2.92
2185 2477 2.508526 GGAGGTGCACAAACTCTTGAT 58.491 47.619 20.43 0.00 36.33 2.57
2186 2478 1.476833 GGGAGGTGCACAAACTCTTGA 60.477 52.381 20.43 0.00 36.33 3.02
2199 2491 6.148150 CACATTTCATCAAAATTTGGGAGGTG 59.852 38.462 5.83 9.43 35.32 4.00
2260 2552 2.362242 TCCAAGTTGGAGGTCCGAG 58.638 57.895 21.05 0.00 42.67 4.63
2279 2571 2.019984 GCCCGCTCAATTCAAGATTCT 58.980 47.619 0.00 0.00 0.00 2.40
2290 2582 0.465460 AAACAGAGTTGCCCGCTCAA 60.465 50.000 0.00 0.00 35.55 3.02
2304 3515 4.329528 CACAACAATGAACCCAACAAACAG 59.670 41.667 0.00 0.00 0.00 3.16
2363 3574 0.670239 CAAAAACAATCCGGCCAGCC 60.670 55.000 2.24 0.00 0.00 4.85
2452 3663 4.949856 GTGATGGTCCACAAACCTGATTAT 59.050 41.667 0.00 0.00 40.20 1.28
2453 3664 4.202514 TGTGATGGTCCACAAACCTGATTA 60.203 41.667 0.00 0.00 43.32 1.75
2455 3666 2.108075 TGTGATGGTCCACAAACCTGAT 59.892 45.455 0.00 0.00 43.32 2.90
2456 3667 1.492599 TGTGATGGTCCACAAACCTGA 59.507 47.619 0.00 0.00 43.32 3.86
2457 3668 1.979855 TGTGATGGTCCACAAACCTG 58.020 50.000 0.00 0.00 43.32 4.00
2463 3674 2.426842 TGTGTTTGTGATGGTCCACA 57.573 45.000 0.00 0.00 44.45 4.17
2464 3675 4.615912 GCTTATGTGTTTGTGATGGTCCAC 60.616 45.833 0.00 0.00 37.55 4.02
2472 3683 7.081349 CCTTTTATTCGCTTATGTGTTTGTGA 58.919 34.615 0.00 0.00 0.00 3.58
2478 3689 3.486875 GCGCCTTTTATTCGCTTATGTGT 60.487 43.478 0.00 0.00 44.79 3.72
2503 3714 5.811399 TGTTACTTTCAGTGTCTTGGTTG 57.189 39.130 0.00 0.00 0.00 3.77
2514 3725 7.118971 CCCTGATCTCTTTCTTGTTACTTTCAG 59.881 40.741 0.00 0.00 0.00 3.02
2520 3731 5.179533 GGACCCTGATCTCTTTCTTGTTAC 58.820 45.833 0.00 0.00 0.00 2.50
2543 3754 0.535102 AAGTGCGTTGGACCTTGAGG 60.535 55.000 0.00 0.00 42.17 3.86
2546 3757 0.817634 TGGAAGTGCGTTGGACCTTG 60.818 55.000 0.00 0.00 0.00 3.61
2547 3758 0.106918 TTGGAAGTGCGTTGGACCTT 60.107 50.000 0.00 0.00 0.00 3.50
2548 3759 0.535102 CTTGGAAGTGCGTTGGACCT 60.535 55.000 0.00 0.00 0.00 3.85
2549 3760 0.534203 TCTTGGAAGTGCGTTGGACC 60.534 55.000 0.00 0.00 0.00 4.46
2550 3761 0.586802 GTCTTGGAAGTGCGTTGGAC 59.413 55.000 0.00 0.00 0.00 4.02
2551 3762 0.534203 GGTCTTGGAAGTGCGTTGGA 60.534 55.000 0.00 0.00 0.00 3.53
2552 3763 1.515521 GGGTCTTGGAAGTGCGTTGG 61.516 60.000 0.00 0.00 0.00 3.77
2553 3764 0.817634 TGGGTCTTGGAAGTGCGTTG 60.818 55.000 0.00 0.00 0.00 4.10
2554 3765 0.106918 TTGGGTCTTGGAAGTGCGTT 60.107 50.000 0.00 0.00 0.00 4.84
2555 3766 0.106918 TTTGGGTCTTGGAAGTGCGT 60.107 50.000 0.00 0.00 0.00 5.24
2556 3767 1.001378 CTTTTGGGTCTTGGAAGTGCG 60.001 52.381 0.00 0.00 0.00 5.34
2557 3768 1.341209 CCTTTTGGGTCTTGGAAGTGC 59.659 52.381 0.00 0.00 35.46 4.40
2558 3769 1.341209 GCCTTTTGGGTCTTGGAAGTG 59.659 52.381 0.00 0.00 40.82 3.16
2559 3770 1.063266 TGCCTTTTGGGTCTTGGAAGT 60.063 47.619 0.00 0.00 40.82 3.01
2560 3771 1.703411 TGCCTTTTGGGTCTTGGAAG 58.297 50.000 0.00 0.00 40.82 3.46
2561 3772 2.247358 GATGCCTTTTGGGTCTTGGAA 58.753 47.619 0.00 0.00 40.82 3.53
2562 3773 1.886222 CGATGCCTTTTGGGTCTTGGA 60.886 52.381 0.00 0.00 40.82 3.53
2563 3774 0.527565 CGATGCCTTTTGGGTCTTGG 59.472 55.000 0.00 0.00 40.82 3.61
2564 3775 0.527565 CCGATGCCTTTTGGGTCTTG 59.472 55.000 0.00 0.00 40.82 3.02
2565 3776 0.404040 TCCGATGCCTTTTGGGTCTT 59.596 50.000 0.00 0.00 40.82 3.01
2566 3777 0.035056 CTCCGATGCCTTTTGGGTCT 60.035 55.000 0.00 0.00 40.82 3.85
2567 3778 1.032114 CCTCCGATGCCTTTTGGGTC 61.032 60.000 0.00 0.00 40.82 4.46
2568 3779 1.000896 CCTCCGATGCCTTTTGGGT 60.001 57.895 0.00 0.00 40.82 4.51
2569 3780 2.418083 GCCTCCGATGCCTTTTGGG 61.418 63.158 0.00 0.00 40.82 4.12
2570 3781 3.200522 GCCTCCGATGCCTTTTGG 58.799 61.111 0.00 0.00 44.18 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.