Multiple sequence alignment - TraesCS5A01G316600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G316600 chr5A 100.000 3708 0 0 1 3708 527492552 527488845 0.000000e+00 6848
1 TraesCS5A01G316600 chr5D 94.375 2862 102 26 864 3682 414810989 414808144 0.000000e+00 4338
2 TraesCS5A01G316600 chr5D 85.873 899 47 30 1 862 414811880 414811025 0.000000e+00 883
3 TraesCS5A01G316600 chr5B 93.980 2691 115 22 866 3521 500530366 500527688 0.000000e+00 4028
4 TraesCS5A01G316600 chr5B 88.872 647 30 21 1 622 500531306 500530677 0.000000e+00 758
5 TraesCS5A01G316600 chr7A 78.580 803 146 17 1212 2000 280071595 280070805 1.190000e-139 507
6 TraesCS5A01G316600 chr7B 78.288 806 145 20 1209 1993 237509471 237508675 3.330000e-135 492


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G316600 chr5A 527488845 527492552 3707 True 6848.0 6848 100.000 1 3708 1 chr5A.!!$R1 3707
1 TraesCS5A01G316600 chr5D 414808144 414811880 3736 True 2610.5 4338 90.124 1 3682 2 chr5D.!!$R1 3681
2 TraesCS5A01G316600 chr5B 500527688 500531306 3618 True 2393.0 4028 91.426 1 3521 2 chr5B.!!$R1 3520
3 TraesCS5A01G316600 chr7A 280070805 280071595 790 True 507.0 507 78.580 1212 2000 1 chr7A.!!$R1 788
4 TraesCS5A01G316600 chr7B 237508675 237509471 796 True 492.0 492 78.288 1209 1993 1 chr7B.!!$R1 784

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
756 842 0.033781 AAACGCCTGCACCGTTACTA 59.966 50.0 17.57 0.0 46.90 1.82 F
757 843 0.389426 AACGCCTGCACCGTTACTAG 60.389 55.0 16.21 0.0 45.89 2.57 F
2053 2199 0.298411 CACGTTTCGTTCCGTTTCGT 59.702 50.0 0.00 0.0 38.32 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1693 1832 0.543174 ACCTCCTCGCTCTCCTTGTT 60.543 55.000 0.00 0.0 0.00 2.83 R
2082 2228 0.955428 GAACACCATCTCCTGCGCAA 60.955 55.000 13.05 0.0 0.00 4.85 R
2950 3116 1.003839 TTACAGGGCAGTTGCGGAG 60.004 57.895 0.00 0.0 43.26 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 86 1.709147 CTGCACTGCACCTAATCCGC 61.709 60.000 0.00 0.00 33.79 5.54
105 106 1.949525 CAATGAGGGCAGGTTAATCGG 59.050 52.381 0.00 0.00 0.00 4.18
111 112 2.534903 GCAGGTTAATCGGCTCGCC 61.535 63.158 3.37 0.00 0.00 5.54
183 184 3.514510 TACGACGTAGCGTACATGC 57.485 52.632 2.97 0.00 43.61 4.06
208 209 2.743938 GCTCAGGCTATTCGATTCGAA 58.256 47.619 22.45 22.45 41.71 3.71
223 224 2.595124 TCGAATCCGTGCATGTATGT 57.405 45.000 4.96 0.00 37.05 2.29
224 225 3.719173 TCGAATCCGTGCATGTATGTA 57.281 42.857 4.96 0.00 37.05 2.29
225 226 4.251543 TCGAATCCGTGCATGTATGTAT 57.748 40.909 4.96 0.00 37.05 2.29
226 227 3.987220 TCGAATCCGTGCATGTATGTATG 59.013 43.478 4.96 0.00 37.05 2.39
269 270 2.708386 GCTGTAGCCATACGGAGTAG 57.292 55.000 0.00 0.00 40.23 2.57
270 271 1.336056 GCTGTAGCCATACGGAGTAGC 60.336 57.143 0.00 0.00 40.23 3.58
288 289 1.770085 GCTAGCTGCAGTTCATCGCC 61.770 60.000 16.64 0.00 42.31 5.54
348 361 2.126189 GTACGTGCCGTCACCTCC 60.126 66.667 0.00 0.00 41.54 4.30
456 470 4.962836 GGGCATGGGCGATGGAGG 62.963 72.222 11.58 0.00 42.47 4.30
457 471 3.877450 GGCATGGGCGATGGAGGA 61.877 66.667 11.58 0.00 42.47 3.71
481 504 1.301479 GAACCGAACCGACCTTGCT 60.301 57.895 0.00 0.00 0.00 3.91
512 545 1.595382 CATGTGCCCGCCTACTAGC 60.595 63.158 0.00 0.00 0.00 3.42
514 547 0.469331 ATGTGCCCGCCTACTAGCTA 60.469 55.000 0.00 0.00 0.00 3.32
518 551 0.880441 GCCCGCCTACTAGCTACTAC 59.120 60.000 0.00 0.00 0.00 2.73
704 790 2.348888 CCCCTCCACGACTAACGCT 61.349 63.158 0.00 0.00 46.94 5.07
714 800 0.905839 GACTAACGCTCGCAGTTACG 59.094 55.000 0.00 0.00 33.42 3.18
742 828 0.235404 CAATTTGGGCAAGCAAACGC 59.765 50.000 0.00 0.00 0.00 4.84
753 839 2.899044 GCAAACGCCTGCACCGTTA 61.899 57.895 17.57 0.00 46.90 3.18
754 840 1.082366 CAAACGCCTGCACCGTTAC 60.082 57.895 17.57 0.00 46.90 2.50
755 841 1.227734 AAACGCCTGCACCGTTACT 60.228 52.632 17.57 4.16 46.90 2.24
756 842 0.033781 AAACGCCTGCACCGTTACTA 59.966 50.000 17.57 0.00 46.90 1.82
757 843 0.389426 AACGCCTGCACCGTTACTAG 60.389 55.000 16.21 0.00 45.89 2.57
758 844 1.214589 CGCCTGCACCGTTACTAGT 59.785 57.895 0.00 0.00 0.00 2.57
759 845 0.452987 CGCCTGCACCGTTACTAGTA 59.547 55.000 0.00 0.00 0.00 1.82
760 846 1.533338 CGCCTGCACCGTTACTAGTAG 60.533 57.143 2.23 0.00 0.00 2.57
761 847 1.202382 GCCTGCACCGTTACTAGTAGG 60.202 57.143 2.23 4.74 37.00 3.18
762 848 2.372264 CCTGCACCGTTACTAGTAGGA 58.628 52.381 13.68 0.00 36.14 2.94
763 849 2.358267 CCTGCACCGTTACTAGTAGGAG 59.642 54.545 13.68 7.90 36.14 3.69
764 850 3.015327 CTGCACCGTTACTAGTAGGAGT 58.985 50.000 13.68 5.35 0.00 3.85
765 851 4.194640 CTGCACCGTTACTAGTAGGAGTA 58.805 47.826 13.68 5.91 0.00 2.59
766 852 4.194640 TGCACCGTTACTAGTAGGAGTAG 58.805 47.826 13.68 1.75 33.52 2.57
767 853 4.195416 GCACCGTTACTAGTAGGAGTAGT 58.805 47.826 13.68 0.02 37.97 2.73
793 879 1.098869 TCTCTCTCGGCACTGATGAC 58.901 55.000 0.00 0.00 0.00 3.06
804 890 2.353030 TGATGACGCGCCGTATCG 60.353 61.111 5.73 0.00 41.37 2.92
821 907 1.570813 TCGATCATCATCAACGCCAC 58.429 50.000 0.00 0.00 0.00 5.01
826 912 4.376717 CGATCATCATCAACGCCACTAATG 60.377 45.833 0.00 0.00 0.00 1.90
862 948 2.895372 CGCCCTGGTCATTACGGC 60.895 66.667 0.00 0.00 36.21 5.68
972 1099 1.341913 AAAAGCCCCAACAACACCCC 61.342 55.000 0.00 0.00 0.00 4.95
974 1101 2.917227 GCCCCAACAACACCCCAG 60.917 66.667 0.00 0.00 0.00 4.45
1044 1171 1.220206 CAGCTGGCTCCTGTACCTG 59.780 63.158 5.57 0.00 0.00 4.00
1264 1391 3.474570 GGCTCATGACCGGCCTCT 61.475 66.667 15.42 0.00 42.31 3.69
1266 1393 2.725312 GCTCATGACCGGCCTCTCA 61.725 63.158 0.00 0.00 0.00 3.27
1398 1525 0.985490 GGGAGATCCTCAACAGCCCT 60.985 60.000 0.00 0.00 35.95 5.19
1693 1832 2.683859 CGCTACGACCTGGACACGA 61.684 63.158 15.93 3.64 0.00 4.35
1694 1833 1.582968 GCTACGACCTGGACACGAA 59.417 57.895 15.93 0.00 0.00 3.85
2045 2191 2.424640 GCCACGCACGTTTCGTTC 60.425 61.111 9.58 2.58 38.32 3.95
2050 2196 1.012014 CGCACGTTTCGTTCCGTTT 60.012 52.632 0.00 0.00 38.32 3.60
2051 2197 0.983481 CGCACGTTTCGTTCCGTTTC 60.983 55.000 0.00 0.00 38.32 2.78
2052 2198 0.983481 GCACGTTTCGTTCCGTTTCG 60.983 55.000 0.00 0.00 38.32 3.46
2053 2199 0.298411 CACGTTTCGTTCCGTTTCGT 59.702 50.000 0.00 0.00 38.32 3.85
2054 2200 0.998669 ACGTTTCGTTCCGTTTCGTT 59.001 45.000 0.00 0.00 36.35 3.85
2055 2201 1.393196 ACGTTTCGTTCCGTTTCGTTT 59.607 42.857 0.00 0.00 36.35 3.60
2082 2228 4.184629 GCCTCTGATACGTTCATCTTTGT 58.815 43.478 0.00 0.00 32.72 2.83
2085 2231 5.446473 CCTCTGATACGTTCATCTTTGTTGC 60.446 44.000 0.00 0.00 32.72 4.17
2146 2292 4.415150 ATGGAGTGGGTGCTGGCG 62.415 66.667 0.00 0.00 0.00 5.69
2236 2382 4.773117 GCCGTGACCGAGTCCGAC 62.773 72.222 12.68 0.00 38.22 4.79
2287 2433 2.356313 AAGGAGACGCTGCGTGTG 60.356 61.111 33.96 0.71 41.37 3.82
2398 2544 0.611618 TGGTGAACATGTGGGCCATC 60.612 55.000 10.70 2.70 0.00 3.51
2596 2754 1.446966 GCACGAGCTGGAGTTCCTC 60.447 63.158 1.44 0.00 37.91 3.71
2848 3014 7.015389 AGCAAGGGATGAATTACCTAGTAGTAC 59.985 40.741 0.00 0.00 33.37 2.73
2950 3116 8.658499 TCGTTAGCCTTTTATTATTTCTCTCC 57.342 34.615 0.00 0.00 0.00 3.71
2953 3119 9.058174 GTTAGCCTTTTATTATTTCTCTCCTCC 57.942 37.037 0.00 0.00 0.00 4.30
3031 3199 7.657761 ACTGGTACTAAGAAACAAATGTCTCTG 59.342 37.037 3.53 0.00 0.00 3.35
3042 3210 9.173939 GAAACAAATGTCTCTGTCTTGTTATTG 57.826 33.333 0.00 0.00 38.82 1.90
3093 3261 5.444176 AGTAGTAGTACCTGGTATGGTGAC 58.556 45.833 10.23 6.47 41.05 3.67
3126 3307 5.235850 TGTCCAAACAGAGCTGGTAAATA 57.764 39.130 0.00 0.00 34.11 1.40
3174 3361 3.551046 GCATATCCAGGTCTACAGTGACG 60.551 52.174 0.00 0.00 37.81 4.35
3359 3547 2.997952 TTTCTACCCAAGCGCGTGCA 62.998 55.000 24.79 4.20 46.23 4.57
3360 3548 3.490759 CTACCCAAGCGCGTGCAG 61.491 66.667 24.79 14.89 46.23 4.41
3415 3603 2.546584 CCCAAAAAGCACTTCTCCAAGC 60.547 50.000 0.00 0.00 32.09 4.01
3486 3675 2.264794 GTGGTGAATCCGACCGCT 59.735 61.111 0.00 0.00 40.30 5.52
3531 3720 0.889186 ACATCCAACGTTGCTGTCCC 60.889 55.000 22.93 0.00 0.00 4.46
3606 3795 4.760530 TCACTGCCATATAAGCTCAGTT 57.239 40.909 0.00 0.00 36.01 3.16
3613 3802 4.274459 GCCATATAAGCTCAGTTGTTCAGG 59.726 45.833 0.00 0.00 0.00 3.86
3628 3817 3.072330 TGTTCAGGCATGGAGTTTCTACA 59.928 43.478 0.00 0.00 0.00 2.74
3666 3856 1.668751 CCGGGTGAACAATAACATCGG 59.331 52.381 0.00 0.00 32.93 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 1.709147 GCGGATTAGGTGCAGTGCAG 61.709 60.000 20.42 5.11 40.08 4.41
67 68 1.745115 GCGGATTAGGTGCAGTGCA 60.745 57.895 15.37 15.37 35.60 4.57
68 69 1.305219 TTGCGGATTAGGTGCAGTGC 61.305 55.000 8.58 8.58 40.15 4.40
69 70 1.064505 CATTGCGGATTAGGTGCAGTG 59.935 52.381 0.00 0.00 40.15 3.66
70 71 1.065491 TCATTGCGGATTAGGTGCAGT 60.065 47.619 0.00 0.00 40.15 4.40
85 86 1.949525 CCGATTAACCTGCCCTCATTG 59.050 52.381 0.00 0.00 0.00 2.82
127 128 3.364621 CCATACGCATTCTGCAAACAAAC 59.635 43.478 0.00 0.00 45.36 2.93
159 160 0.657312 TACGCTACGTCGTATGTGGG 59.343 55.000 16.41 11.38 43.15 4.61
183 184 7.722538 TCGAATCGAATAGCCTGAGCTCAAG 62.723 48.000 18.85 13.36 40.26 3.02
208 209 2.426522 GCCATACATACATGCACGGAT 58.573 47.619 0.00 0.00 0.00 4.18
223 224 0.036732 GCTCCATCGATTGGGCCATA 59.963 55.000 7.26 0.00 46.45 2.74
224 225 1.228367 GCTCCATCGATTGGGCCAT 60.228 57.895 7.26 0.00 46.45 4.40
225 226 1.053835 TAGCTCCATCGATTGGGCCA 61.054 55.000 17.19 0.00 46.45 5.36
226 227 0.326264 ATAGCTCCATCGATTGGGCC 59.674 55.000 17.19 0.00 46.45 5.80
258 259 1.609072 TGCAGCTAGCTACTCCGTATG 59.391 52.381 18.86 3.51 45.94 2.39
266 267 2.123342 CGATGAACTGCAGCTAGCTAC 58.877 52.381 18.86 13.19 45.94 3.58
267 268 1.536922 GCGATGAACTGCAGCTAGCTA 60.537 52.381 18.86 1.19 45.94 3.32
268 269 0.809241 GCGATGAACTGCAGCTAGCT 60.809 55.000 12.68 12.68 45.94 3.32
269 270 1.640604 GCGATGAACTGCAGCTAGC 59.359 57.895 15.27 6.62 45.96 3.42
270 271 1.485838 CGGCGATGAACTGCAGCTAG 61.486 60.000 15.27 0.59 0.00 3.42
288 289 0.538057 CCAACCCATCCATCCATCCG 60.538 60.000 0.00 0.00 0.00 4.18
456 470 1.416373 GTCGGTTCGGTTCAGTTCTC 58.584 55.000 0.00 0.00 0.00 2.87
457 471 0.033090 GGTCGGTTCGGTTCAGTTCT 59.967 55.000 0.00 0.00 0.00 3.01
502 525 2.067766 CGAGGTAGTAGCTAGTAGGCG 58.932 57.143 8.61 8.90 37.29 5.52
512 545 3.603671 GGCCGGCCGAGGTAGTAG 61.604 72.222 33.60 8.26 0.00 2.57
680 766 4.530857 GTCGTGGAGGGGCATCCG 62.531 72.222 3.83 0.00 42.77 4.18
714 800 0.746063 TGCCCAAATTGATGATCGCC 59.254 50.000 0.00 0.00 0.00 5.54
742 828 2.358267 CTCCTACTAGTAACGGTGCAGG 59.642 54.545 3.76 0.87 0.00 4.85
753 839 6.384886 AGAGAAGCAGTACTACTCCTACTAGT 59.615 42.308 0.00 0.00 0.00 2.57
754 840 6.823497 AGAGAAGCAGTACTACTCCTACTAG 58.177 44.000 0.00 0.00 0.00 2.57
755 841 6.612456 AGAGAGAAGCAGTACTACTCCTACTA 59.388 42.308 0.00 0.00 0.00 1.82
756 842 5.427481 AGAGAGAAGCAGTACTACTCCTACT 59.573 44.000 0.00 0.00 0.00 2.57
757 843 5.677567 AGAGAGAAGCAGTACTACTCCTAC 58.322 45.833 0.00 0.00 0.00 3.18
758 844 5.452216 CGAGAGAGAAGCAGTACTACTCCTA 60.452 48.000 0.00 0.00 0.00 2.94
759 845 4.682320 CGAGAGAGAAGCAGTACTACTCCT 60.682 50.000 0.00 0.00 0.00 3.69
760 846 3.558418 CGAGAGAGAAGCAGTACTACTCC 59.442 52.174 0.00 0.00 0.00 3.85
761 847 3.558418 CCGAGAGAGAAGCAGTACTACTC 59.442 52.174 0.00 3.00 0.00 2.59
762 848 3.537580 CCGAGAGAGAAGCAGTACTACT 58.462 50.000 0.00 0.00 0.00 2.57
763 849 2.032426 GCCGAGAGAGAAGCAGTACTAC 59.968 54.545 0.00 0.00 0.00 2.73
764 850 2.290464 GCCGAGAGAGAAGCAGTACTA 58.710 52.381 0.00 0.00 0.00 1.82
765 851 1.099689 GCCGAGAGAGAAGCAGTACT 58.900 55.000 0.00 0.00 0.00 2.73
766 852 0.811915 TGCCGAGAGAGAAGCAGTAC 59.188 55.000 0.00 0.00 0.00 2.73
767 853 0.811915 GTGCCGAGAGAGAAGCAGTA 59.188 55.000 0.00 0.00 35.56 2.74
793 879 0.798389 ATGATGATCGATACGGCGCG 60.798 55.000 6.90 0.00 0.00 6.86
800 886 3.005791 AGTGGCGTTGATGATGATCGATA 59.994 43.478 0.00 0.00 0.00 2.92
804 890 4.751600 TCATTAGTGGCGTTGATGATGATC 59.248 41.667 0.00 0.00 0.00 2.92
844 930 2.203015 CCGTAATGACCAGGGCGG 60.203 66.667 0.00 0.00 42.50 6.13
854 940 3.560278 GACGCACGGGCCGTAATG 61.560 66.667 33.65 24.97 38.32 1.90
974 1101 4.766088 CGCTCGCCTTGCTTTGGC 62.766 66.667 5.35 5.35 46.42 4.52
987 1114 0.530650 TCGCCATGGATTCTTCGCTC 60.531 55.000 18.40 0.00 0.00 5.03
1035 1162 2.202623 GCGAGCGACAGGTACAGG 60.203 66.667 0.00 0.00 0.00 4.00
1371 1498 2.456364 AGGATCTCCCTGGCCACA 59.544 61.111 0.00 0.00 45.61 4.17
1637 1776 2.317609 ATCACGTTGTGCAGCGACC 61.318 57.895 14.78 0.00 38.42 4.79
1693 1832 0.543174 ACCTCCTCGCTCTCCTTGTT 60.543 55.000 0.00 0.00 0.00 2.83
1694 1833 0.968393 GACCTCCTCGCTCTCCTTGT 60.968 60.000 0.00 0.00 0.00 3.16
1731 1870 3.190849 TCGTAGCCCTCGTCGACG 61.191 66.667 31.30 31.30 41.45 5.12
1740 1879 4.162690 CCCAGCAGGTCGTAGCCC 62.163 72.222 0.00 0.00 0.00 5.19
1900 2039 2.204461 TGAAGTCCTTGACGGCGGA 61.204 57.895 13.24 0.00 37.67 5.54
1965 2110 2.202932 AGCACCGCGATCATGTCC 60.203 61.111 8.23 0.00 0.00 4.02
2045 2191 1.574702 GAGGCCTGGAAACGAAACGG 61.575 60.000 12.00 0.00 0.00 4.44
2050 2196 1.480954 GTATCAGAGGCCTGGAAACGA 59.519 52.381 12.00 0.00 40.76 3.85
2051 2197 1.802880 CGTATCAGAGGCCTGGAAACG 60.803 57.143 12.00 10.05 40.76 3.60
2052 2198 1.207329 ACGTATCAGAGGCCTGGAAAC 59.793 52.381 12.00 0.21 40.76 2.78
2053 2199 1.568504 ACGTATCAGAGGCCTGGAAA 58.431 50.000 12.00 0.00 40.76 3.13
2054 2200 1.480954 GAACGTATCAGAGGCCTGGAA 59.519 52.381 12.00 0.00 40.76 3.53
2055 2201 1.112113 GAACGTATCAGAGGCCTGGA 58.888 55.000 12.00 8.37 40.76 3.86
2082 2228 0.955428 GAACACCATCTCCTGCGCAA 60.955 55.000 13.05 0.00 0.00 4.85
2085 2231 1.811266 CGGAACACCATCTCCTGCG 60.811 63.158 0.00 0.00 0.00 5.18
2178 2324 3.699894 CCAGCTCCTCGTGCACCT 61.700 66.667 12.15 0.00 0.00 4.00
2465 2623 3.294750 CGACCCCATGACGGAGAA 58.705 61.111 5.85 0.00 36.56 2.87
2527 2685 3.483869 ATCGCCAGGCTCTTCCCC 61.484 66.667 10.54 0.00 34.51 4.81
2848 3014 6.920817 TGGCACGTCCATATATAAAGTCTAG 58.079 40.000 3.02 0.00 40.72 2.43
2945 3111 2.125350 GGCAGTTGCGGAGGAGAG 60.125 66.667 0.00 0.00 43.26 3.20
2949 3115 2.463589 TTACAGGGCAGTTGCGGAGG 62.464 60.000 0.00 0.00 43.26 4.30
2950 3116 1.003839 TTACAGGGCAGTTGCGGAG 60.004 57.895 0.00 0.00 43.26 4.63
2953 3119 2.309528 TATCTTACAGGGCAGTTGCG 57.690 50.000 0.00 0.00 43.26 4.85
3031 3199 8.882415 TCGGAATAGGATAACAATAACAAGAC 57.118 34.615 0.00 0.00 0.00 3.01
3042 3210 6.351327 GCATTATGCTCGGAATAGGATAAC 57.649 41.667 10.27 0.00 40.96 1.89
3072 3240 5.195940 GTGTCACCATACCAGGTACTACTA 58.804 45.833 0.00 0.00 40.77 1.82
3073 3241 4.021916 GTGTCACCATACCAGGTACTACT 58.978 47.826 0.00 0.00 40.77 2.57
3074 3242 3.765511 TGTGTCACCATACCAGGTACTAC 59.234 47.826 0.00 0.00 40.77 2.73
3126 3307 7.096551 GCTTGGTTGGTGTACATATTTTGATT 58.903 34.615 0.00 0.00 0.00 2.57
3174 3361 3.132289 TGATCACGGGACAAGAATCTACC 59.868 47.826 0.00 0.00 0.00 3.18
3208 3395 3.241322 CAGCATTTGCAATAACTTAGCGC 59.759 43.478 0.00 0.00 45.16 5.92
3486 3675 2.515057 AAAGACGGTGGCGTGCAA 60.515 55.556 0.00 0.00 0.00 4.08
3498 3687 1.680735 TGGATGTTGGTGCACAAAGAC 59.319 47.619 20.43 11.21 41.58 3.01
3531 3720 7.649306 AGCAAACAGTAACAGATTTTTAGCTTG 59.351 33.333 0.00 0.00 0.00 4.01
3606 3795 2.957402 AGAAACTCCATGCCTGAACA 57.043 45.000 0.00 0.00 0.00 3.18
3613 3802 2.749621 CCCAAGTGTAGAAACTCCATGC 59.250 50.000 0.00 0.00 0.00 4.06
3644 3833 2.718563 GATGTTATTGTTCACCCGGGT 58.281 47.619 24.16 24.16 0.00 5.28
3647 3837 1.063469 GCCGATGTTATTGTTCACCCG 59.937 52.381 0.00 0.00 0.00 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.