Multiple sequence alignment - TraesCS5A01G315700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G315700 chr5A 100.000 4876 0 0 1 4876 526392791 526397666 0.000000e+00 9005.0
1 TraesCS5A01G315700 chr5A 87.692 65 6 1 4776 4838 707705975 707706039 1.880000e-09 75.0
2 TraesCS5A01G315700 chr5D 88.134 1104 67 27 3059 4117 413700302 413701386 0.000000e+00 1254.0
3 TraesCS5A01G315700 chr5D 87.800 1082 52 31 304 1323 413697565 413698628 0.000000e+00 1194.0
4 TraesCS5A01G315700 chr5D 82.998 1241 91 45 1750 2914 413699129 413700325 0.000000e+00 1013.0
5 TraesCS5A01G315700 chr5D 87.138 622 50 14 4152 4769 413757306 413757901 0.000000e+00 678.0
6 TraesCS5A01G315700 chr5D 78.780 410 25 29 1342 1693 413698723 413699128 8.220000e-53 219.0
7 TraesCS5A01G315700 chr5D 77.723 202 34 11 1012 1204 546077027 546076828 3.990000e-21 113.0
8 TraesCS5A01G315700 chr5D 88.750 80 5 4 2980 3057 538176537 538176614 1.440000e-15 95.3
9 TraesCS5A01G315700 chr5D 94.545 55 2 1 1704 1757 22835637 22835691 3.130000e-12 84.2
10 TraesCS5A01G315700 chr5B 91.521 861 31 13 3051 3882 498882152 498882999 0.000000e+00 1147.0
11 TraesCS5A01G315700 chr5B 88.791 910 55 18 3897 4762 498883053 498883959 0.000000e+00 1072.0
12 TraesCS5A01G315700 chr5B 87.223 767 28 31 584 1323 498878591 498879314 0.000000e+00 809.0
13 TraesCS5A01G315700 chr5B 87.731 595 41 10 2476 3040 498881504 498882096 0.000000e+00 665.0
14 TraesCS5A01G315700 chr5B 86.014 572 30 16 1758 2297 498879663 498880216 7.080000e-158 568.0
15 TraesCS5A01G315700 chr5B 79.124 388 32 19 1317 1703 498879336 498879675 6.350000e-54 222.0
16 TraesCS5A01G315700 chr5B 82.545 275 22 15 21 279 498877786 498878050 8.220000e-53 219.0
17 TraesCS5A01G315700 chr5B 91.071 112 9 1 2283 2393 498880240 498880351 3.040000e-32 150.0
18 TraesCS5A01G315700 chr5B 78.756 193 30 11 1021 1204 689225068 689224878 8.570000e-23 119.0
19 TraesCS5A01G315700 chr7B 82.515 326 47 4 3389 3705 524036767 524036443 1.340000e-70 278.0
20 TraesCS5A01G315700 chr7B 93.103 58 3 1 1700 1756 688926918 688926975 3.130000e-12 84.2
21 TraesCS5A01G315700 chr7D 80.000 350 60 4 3389 3729 495704358 495704010 2.910000e-62 250.0
22 TraesCS5A01G315700 chr7D 100.000 49 0 0 1708 1756 241850944 241850896 1.870000e-14 91.6
23 TraesCS5A01G315700 chr7D 87.838 74 7 2 2976 3049 184573355 184573426 8.700000e-13 86.1
24 TraesCS5A01G315700 chr7D 90.164 61 2 2 4790 4846 163564193 163564133 5.230000e-10 76.8
25 TraesCS5A01G315700 chr7D 94.118 51 2 1 4775 4824 566231047 566230997 5.230000e-10 76.8
26 TraesCS5A01G315700 chr7A 84.343 198 25 5 1073 1267 561583950 561583756 6.440000e-44 189.0
27 TraesCS5A01G315700 chr3D 80.861 209 38 2 1060 1267 339847087 339846880 3.910000e-36 163.0
28 TraesCS5A01G315700 chr3D 87.302 63 5 3 4775 4834 523558375 523558437 8.760000e-08 69.4
29 TraesCS5A01G315700 chr3A 80.861 209 38 2 1060 1267 464914394 464914601 3.910000e-36 163.0
30 TraesCS5A01G315700 chr3B 80.383 209 39 2 1060 1267 438538018 438537811 1.820000e-34 158.0
31 TraesCS5A01G315700 chr3B 94.340 53 2 1 1705 1756 61984794 61984846 4.050000e-11 80.5
32 TraesCS5A01G315700 chr3B 100.000 28 0 0 1236 1263 447229969 447229996 9.000000e-03 52.8
33 TraesCS5A01G315700 chr4A 82.090 134 22 2 1072 1204 623326767 623326899 3.990000e-21 113.0
34 TraesCS5A01G315700 chr1D 91.549 71 5 1 2979 3049 176742403 176742334 4.020000e-16 97.1
35 TraesCS5A01G315700 chr1D 87.179 78 9 1 2973 3049 402437778 402437855 2.420000e-13 87.9
36 TraesCS5A01G315700 chr1D 97.778 45 1 0 4775 4819 37884646 37884690 1.460000e-10 78.7
37 TraesCS5A01G315700 chrUn 92.308 65 4 1 2979 3043 91676007 91675944 1.870000e-14 91.6
38 TraesCS5A01G315700 chrUn 93.548 62 3 1 2979 3040 441250198 441250258 1.870000e-14 91.6
39 TraesCS5A01G315700 chr6B 90.278 72 4 3 2980 3049 84092 84022 1.870000e-14 91.6
40 TraesCS5A01G315700 chr4D 86.905 84 8 3 2966 3049 15786282 15786202 1.870000e-14 91.6
41 TraesCS5A01G315700 chr1B 88.312 77 7 1 2973 3049 421421371 421421297 1.870000e-14 91.6
42 TraesCS5A01G315700 chr1B 97.778 45 1 0 4775 4819 57618803 57618847 1.460000e-10 78.7
43 TraesCS5A01G315700 chr2D 88.000 75 4 4 4774 4844 540315013 540315086 3.130000e-12 84.2
44 TraesCS5A01G315700 chr2A 88.000 75 4 4 4774 4844 683725551 683725624 3.130000e-12 84.2
45 TraesCS5A01G315700 chr1A 94.545 55 2 1 1703 1756 377940019 377940073 3.130000e-12 84.2
46 TraesCS5A01G315700 chr1A 94.340 53 2 1 1705 1756 120017809 120017861 4.050000e-11 80.5
47 TraesCS5A01G315700 chr1A 92.857 56 2 1 1703 1756 516825619 516825564 4.050000e-11 80.5
48 TraesCS5A01G315700 chr6A 94.231 52 3 0 1704 1755 76743674 76743623 4.050000e-11 80.5
49 TraesCS5A01G315700 chr6D 94.231 52 2 1 4774 4824 327364453 327364402 1.460000e-10 78.7
50 TraesCS5A01G315700 chr6D 92.593 54 4 0 1703 1756 419440883 419440830 1.460000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G315700 chr5A 526392791 526397666 4875 False 9005.0 9005 100.0000 1 4876 1 chr5A.!!$F1 4875
1 TraesCS5A01G315700 chr5D 413697565 413701386 3821 False 920.0 1254 84.4280 304 4117 4 chr5D.!!$F4 3813
2 TraesCS5A01G315700 chr5D 413757306 413757901 595 False 678.0 678 87.1380 4152 4769 1 chr5D.!!$F2 617
3 TraesCS5A01G315700 chr5B 498877786 498883959 6173 False 606.5 1147 86.7525 21 4762 8 chr5B.!!$F1 4741

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
682 998 0.119358 AGGAAGCAGTAACCCTCCCT 59.881 55.000 0.00 0.00 0.00 4.20 F
941 1278 0.465278 GGAGCTGGGATCAAGAAGGC 60.465 60.000 0.00 0.00 0.00 4.35 F
1374 1805 1.153429 CAATCCTCGTTCCCGGGAC 60.153 63.158 26.87 17.64 36.35 4.46 F
1408 1844 1.235724 GGCACGCCTAGTTTCAACTT 58.764 50.000 0.00 0.00 40.37 2.66 F
2452 4070 0.247537 CCCGCGCGTAAATCAGAAAC 60.248 55.000 29.95 0.00 0.00 2.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1599 2090 0.106918 TGTTTGTCCTTGGCGGAACT 60.107 50.000 0.00 0.00 45.32 3.01 R
2430 4048 0.173029 TCTGATTTACGCGCGGGTTA 59.827 50.000 33.93 22.81 0.00 2.85 R
2435 4053 0.364180 TCGTTTCTGATTTACGCGCG 59.636 50.000 30.96 30.96 35.40 6.86 R
2939 4616 0.904865 ATCACTTCCAGAGGTCGGCA 60.905 55.000 0.00 0.00 0.00 5.69 R
4394 6240 1.153349 GTTCCATCTGGACGGAGGC 60.153 63.158 0.00 0.00 45.39 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.658422 TCGGCCCGTTGGAGTTAC 59.342 61.111 1.63 0.00 0.00 2.50
18 19 1.909781 TCGGCCCGTTGGAGTTACT 60.910 57.895 1.63 0.00 0.00 2.24
19 20 1.447314 CGGCCCGTTGGAGTTACTC 60.447 63.158 3.36 3.36 0.00 2.59
20 21 1.885163 CGGCCCGTTGGAGTTACTCT 61.885 60.000 12.41 0.00 0.00 3.24
21 22 0.323957 GGCCCGTTGGAGTTACTCTT 59.676 55.000 12.41 0.00 0.00 2.85
22 23 1.551883 GGCCCGTTGGAGTTACTCTTA 59.448 52.381 12.41 0.00 0.00 2.10
23 24 2.418334 GGCCCGTTGGAGTTACTCTTAG 60.418 54.545 12.41 2.15 0.00 2.18
24 25 2.418334 GCCCGTTGGAGTTACTCTTAGG 60.418 54.545 12.41 10.20 0.00 2.69
25 26 2.830321 CCCGTTGGAGTTACTCTTAGGT 59.170 50.000 12.41 0.00 0.00 3.08
26 27 3.368116 CCCGTTGGAGTTACTCTTAGGTG 60.368 52.174 12.41 0.00 0.00 4.00
27 28 3.251571 CGTTGGAGTTACTCTTAGGTGC 58.748 50.000 12.41 0.00 0.00 5.01
28 29 3.597255 GTTGGAGTTACTCTTAGGTGCC 58.403 50.000 12.41 0.00 0.00 5.01
29 30 1.822990 TGGAGTTACTCTTAGGTGCCG 59.177 52.381 12.41 0.00 0.00 5.69
30 31 1.823610 GGAGTTACTCTTAGGTGCCGT 59.176 52.381 12.41 0.00 0.00 5.68
71 72 9.624697 GCTAGAAGACATTAAGATCTAGACATG 57.375 37.037 11.25 0.00 41.22 3.21
74 75 9.647918 AGAAGACATTAAGATCTAGACATGGTA 57.352 33.333 0.00 0.00 0.00 3.25
75 76 9.906660 GAAGACATTAAGATCTAGACATGGTAG 57.093 37.037 0.00 0.00 0.00 3.18
77 78 8.855110 AGACATTAAGATCTAGACATGGTAGTG 58.145 37.037 0.00 0.00 0.00 2.74
78 79 7.437748 ACATTAAGATCTAGACATGGTAGTGC 58.562 38.462 0.00 0.00 0.00 4.40
81 82 6.552445 AAGATCTAGACATGGTAGTGCTTT 57.448 37.500 0.00 0.00 0.00 3.51
82 83 5.911752 AGATCTAGACATGGTAGTGCTTTG 58.088 41.667 0.00 0.00 0.00 2.77
83 84 3.861840 TCTAGACATGGTAGTGCTTTGC 58.138 45.455 0.00 0.00 0.00 3.68
97 98 3.780801 GTGCTTTGCGTATTTTCTGATCG 59.219 43.478 0.00 0.00 0.00 3.69
108 109 5.998454 ATTTTCTGATCGTAGCATGAAGG 57.002 39.130 0.00 0.00 0.00 3.46
109 110 2.515926 TCTGATCGTAGCATGAAGGC 57.484 50.000 0.00 0.00 0.00 4.35
134 135 0.530744 TGGCGCACTATCGTCTCTTT 59.469 50.000 10.83 0.00 34.77 2.52
135 136 1.201343 GGCGCACTATCGTCTCTTTC 58.799 55.000 10.83 0.00 0.00 2.62
136 137 1.202313 GGCGCACTATCGTCTCTTTCT 60.202 52.381 10.83 0.00 0.00 2.52
138 139 2.924290 GCGCACTATCGTCTCTTTCTTT 59.076 45.455 0.30 0.00 0.00 2.52
141 142 5.061808 GCGCACTATCGTCTCTTTCTTTTTA 59.938 40.000 0.30 0.00 0.00 1.52
143 144 7.113658 CGCACTATCGTCTCTTTCTTTTTATG 58.886 38.462 0.00 0.00 0.00 1.90
144 145 6.902417 GCACTATCGTCTCTTTCTTTTTATGC 59.098 38.462 0.00 0.00 0.00 3.14
145 146 7.413000 GCACTATCGTCTCTTTCTTTTTATGCA 60.413 37.037 0.00 0.00 0.00 3.96
146 147 8.113062 CACTATCGTCTCTTTCTTTTTATGCAG 58.887 37.037 0.00 0.00 0.00 4.41
147 148 5.862924 TCGTCTCTTTCTTTTTATGCAGG 57.137 39.130 0.00 0.00 0.00 4.85
148 149 4.695455 TCGTCTCTTTCTTTTTATGCAGGG 59.305 41.667 0.00 0.00 0.00 4.45
150 151 5.181245 CGTCTCTTTCTTTTTATGCAGGGAA 59.819 40.000 0.00 0.00 0.00 3.97
156 170 5.514500 TCTTTTTATGCAGGGAAGTACCT 57.486 39.130 0.00 0.00 43.08 3.08
213 227 2.817424 CTCCGGCTGCTCTGCATA 59.183 61.111 0.00 0.00 38.13 3.14
215 229 2.025767 CTCCGGCTGCTCTGCATACT 62.026 60.000 0.00 0.00 38.13 2.12
219 233 0.385751 GGCTGCTCTGCATACTACGA 59.614 55.000 0.00 0.00 38.13 3.43
230 244 3.516300 TGCATACTACGAAAGGGAAAGGA 59.484 43.478 0.00 0.00 0.00 3.36
231 245 4.120589 GCATACTACGAAAGGGAAAGGAG 58.879 47.826 0.00 0.00 0.00 3.69
232 246 2.764439 ACTACGAAAGGGAAAGGAGC 57.236 50.000 0.00 0.00 0.00 4.70
233 247 1.278413 ACTACGAAAGGGAAAGGAGCC 59.722 52.381 0.00 0.00 0.00 4.70
234 248 1.278127 CTACGAAAGGGAAAGGAGCCA 59.722 52.381 0.00 0.00 0.00 4.75
326 340 2.033049 AGTAGCACCGTAGCAGTTATCG 59.967 50.000 0.00 0.00 36.85 2.92
343 357 0.737367 TCGTTCTGCAGAGCGGATTG 60.737 55.000 40.21 20.81 46.43 2.67
394 408 9.748708 CTGAATTAAGAGACTGATTAGAAGAGG 57.251 37.037 0.00 0.00 0.00 3.69
397 411 5.930837 AAGAGACTGATTAGAAGAGGGTG 57.069 43.478 0.00 0.00 0.00 4.61
402 416 4.949121 ACTGATTAGAAGAGGGTGGTACT 58.051 43.478 0.00 0.00 0.00 2.73
403 417 6.068971 AGACTGATTAGAAGAGGGTGGTACTA 60.069 42.308 0.00 0.00 0.00 1.82
508 557 3.006217 CCCTCCCTCAAAAAGAAAGCAAG 59.994 47.826 0.00 0.00 0.00 4.01
509 558 3.006217 CCTCCCTCAAAAAGAAAGCAAGG 59.994 47.826 0.00 0.00 0.00 3.61
510 559 3.891366 CTCCCTCAAAAAGAAAGCAAGGA 59.109 43.478 0.00 0.00 0.00 3.36
513 562 4.525874 CCCTCAAAAAGAAAGCAAGGAGAT 59.474 41.667 0.00 0.00 0.00 2.75
521 570 7.446001 AAAGAAAGCAAGGAGATAAACAGAG 57.554 36.000 0.00 0.00 0.00 3.35
528 582 6.376581 AGCAAGGAGATAAACAGAGGAAATTG 59.623 38.462 0.00 0.00 0.00 2.32
530 584 7.067981 GCAAGGAGATAAACAGAGGAAATTGAT 59.932 37.037 0.00 0.00 0.00 2.57
531 585 8.964772 CAAGGAGATAAACAGAGGAAATTGATT 58.035 33.333 0.00 0.00 0.00 2.57
560 614 7.106890 ACATAAAGAGAAAAGGAAGGAGTAGC 58.893 38.462 0.00 0.00 0.00 3.58
561 615 5.568620 AAAGAGAAAAGGAAGGAGTAGCA 57.431 39.130 0.00 0.00 0.00 3.49
562 616 4.545208 AGAGAAAAGGAAGGAGTAGCAC 57.455 45.455 0.00 0.00 0.00 4.40
614 930 2.125106 CCCTTCCCTCCGAAAGCG 60.125 66.667 0.00 0.00 37.24 4.68
639 955 2.897846 CACGGAACACAACGGGCA 60.898 61.111 0.00 0.00 0.00 5.36
680 996 2.431419 GAGTAGGAAGCAGTAACCCTCC 59.569 54.545 0.00 0.00 0.00 4.30
681 997 1.485480 GTAGGAAGCAGTAACCCTCCC 59.515 57.143 0.00 0.00 0.00 4.30
682 998 0.119358 AGGAAGCAGTAACCCTCCCT 59.881 55.000 0.00 0.00 0.00 4.20
683 999 0.542333 GGAAGCAGTAACCCTCCCTC 59.458 60.000 0.00 0.00 0.00 4.30
737 1058 1.231928 GTCCTCCTCCTCCTCCTCC 59.768 68.421 0.00 0.00 0.00 4.30
747 1068 1.695239 TCCTCCTCCTGCATGCCAT 60.695 57.895 16.68 0.00 0.00 4.40
748 1069 1.528542 CCTCCTCCTGCATGCCATG 60.529 63.158 16.68 0.00 0.00 3.66
809 1146 4.506271 CCAAGCCAAGCATACTGGATAGAT 60.506 45.833 0.00 0.00 0.00 1.98
811 1148 5.413309 AGCCAAGCATACTGGATAGATAC 57.587 43.478 0.00 0.00 0.00 2.24
870 1207 3.184986 TGCGCACATCATATCAAGAATCG 59.815 43.478 5.66 0.00 0.00 3.34
882 1219 4.662468 TCAAGAATCGATCCAGAAGAGG 57.338 45.455 0.00 0.00 0.00 3.69
903 1240 3.560882 GGCCATCATCAGAGGATAAAGGG 60.561 52.174 0.00 0.00 30.87 3.95
928 1265 2.654079 AAGACAGGCGAGGGAGCTG 61.654 63.158 0.00 0.00 37.29 4.24
936 1273 1.445095 CGAGGGAGCTGGGATCAAG 59.555 63.158 0.00 0.00 0.00 3.02
941 1278 0.465278 GGAGCTGGGATCAAGAAGGC 60.465 60.000 0.00 0.00 0.00 4.35
963 1301 4.759621 CTTCTTCATTTGCTCGATCATCG 58.240 43.478 0.00 0.00 42.10 3.84
1233 1572 2.127118 CGCAAGCAAGTCAAGGCG 60.127 61.111 0.00 0.00 38.45 5.52
1268 1607 2.754658 CGGGCAGGAGAGGTACGT 60.755 66.667 0.00 0.00 0.00 3.57
1275 1614 2.484928 GGAGAGGTACGTACGCCCC 61.485 68.421 16.72 15.27 0.00 5.80
1316 1666 2.348888 CCCGGTCGCCTAACTCTGT 61.349 63.158 0.00 0.00 0.00 3.41
1325 1706 4.156373 GTCGCCTAACTCTGTTCTTCTACT 59.844 45.833 0.00 0.00 0.00 2.57
1374 1805 1.153429 CAATCCTCGTTCCCGGGAC 60.153 63.158 26.87 17.64 36.35 4.46
1408 1844 1.235724 GGCACGCCTAGTTTCAACTT 58.764 50.000 0.00 0.00 40.37 2.66
1412 1848 3.242936 GCACGCCTAGTTTCAACTTTCAA 60.243 43.478 0.00 0.00 40.37 2.69
1413 1849 4.732355 GCACGCCTAGTTTCAACTTTCAAA 60.732 41.667 0.00 0.00 40.37 2.69
1414 1850 4.733405 CACGCCTAGTTTCAACTTTCAAAC 59.267 41.667 0.00 0.00 40.37 2.93
1472 1931 2.047274 CGACACCCTCCGCAACAT 60.047 61.111 0.00 0.00 0.00 2.71
1536 1995 8.773645 TGCATACATACATACACTTGCTTAATC 58.226 33.333 0.00 0.00 0.00 1.75
1545 2004 7.607991 ACATACACTTGCTTAATCTTTAGCACT 59.392 33.333 3.31 0.00 46.28 4.40
1547 2006 7.602517 ACACTTGCTTAATCTTTAGCACTAG 57.397 36.000 3.31 2.94 46.28 2.57
1571 2059 3.033909 AGCACCTTCTTTCCAAAGCTTT 58.966 40.909 5.69 5.69 35.99 3.51
1572 2060 4.215109 AGCACCTTCTTTCCAAAGCTTTA 58.785 39.130 12.25 0.00 35.99 1.85
1573 2061 4.279420 AGCACCTTCTTTCCAAAGCTTTAG 59.721 41.667 12.25 4.56 35.99 1.85
1575 2063 5.451937 GCACCTTCTTTCCAAAGCTTTAGTT 60.452 40.000 12.25 0.00 35.99 2.24
1576 2064 6.573434 CACCTTCTTTCCAAAGCTTTAGTTT 58.427 36.000 12.25 0.00 35.99 2.66
1577 2065 7.041721 CACCTTCTTTCCAAAGCTTTAGTTTT 58.958 34.615 12.25 0.00 35.99 2.43
1579 2067 8.195436 ACCTTCTTTCCAAAGCTTTAGTTTTAC 58.805 33.333 12.25 0.00 35.99 2.01
1583 2071 9.361315 TCTTTCCAAAGCTTTAGTTTTACAAAC 57.639 29.630 12.25 0.00 35.99 2.93
1599 2090 2.158534 ACAAACATTGGGTGGCTCTGTA 60.159 45.455 0.00 0.00 34.12 2.74
1629 2120 2.267426 AGGACAAACAAAAGTTTGCGC 58.733 42.857 18.00 0.00 45.33 6.09
1681 2172 2.785540 TGATTAGTGGAGCACATGCA 57.214 45.000 6.64 0.00 45.16 3.96
1689 2180 1.654954 GGAGCACATGCAGCCAAGAG 61.655 60.000 6.64 0.00 45.16 2.85
1705 2196 5.986936 GCCAAGAGCGATTAGTATTTTACC 58.013 41.667 0.00 0.00 0.00 2.85
1706 2197 5.526111 GCCAAGAGCGATTAGTATTTTACCA 59.474 40.000 0.00 0.00 0.00 3.25
1707 2198 6.511282 GCCAAGAGCGATTAGTATTTTACCAC 60.511 42.308 0.00 0.00 0.00 4.16
1708 2199 6.761714 CCAAGAGCGATTAGTATTTTACCACT 59.238 38.462 0.00 0.00 0.00 4.00
1709 2200 7.280205 CCAAGAGCGATTAGTATTTTACCACTT 59.720 37.037 0.00 0.00 0.00 3.16
1710 2201 7.772332 AGAGCGATTAGTATTTTACCACTTG 57.228 36.000 0.00 0.00 0.00 3.16
1711 2202 6.761714 AGAGCGATTAGTATTTTACCACTTGG 59.238 38.462 0.00 0.00 42.17 3.61
1712 2203 6.646267 AGCGATTAGTATTTTACCACTTGGA 58.354 36.000 1.14 0.00 38.94 3.53
1713 2204 7.107542 AGCGATTAGTATTTTACCACTTGGAA 58.892 34.615 1.14 0.00 38.94 3.53
1714 2205 7.773690 AGCGATTAGTATTTTACCACTTGGAAT 59.226 33.333 1.14 0.00 38.94 3.01
1715 2206 9.048446 GCGATTAGTATTTTACCACTTGGAATA 57.952 33.333 1.14 0.00 38.94 1.75
1720 2211 8.047413 AGTATTTTACCACTTGGAATAAACGG 57.953 34.615 1.14 0.00 38.94 4.44
1721 2212 6.904463 ATTTTACCACTTGGAATAAACGGT 57.096 33.333 1.14 0.00 38.94 4.83
1722 2213 6.712179 TTTTACCACTTGGAATAAACGGTT 57.288 33.333 1.14 0.00 38.94 4.44
1723 2214 7.814264 TTTTACCACTTGGAATAAACGGTTA 57.186 32.000 1.14 0.00 38.94 2.85
1724 2215 7.437793 TTTACCACTTGGAATAAACGGTTAG 57.562 36.000 1.14 0.00 38.94 2.34
1725 2216 3.754850 ACCACTTGGAATAAACGGTTAGC 59.245 43.478 1.14 0.00 38.94 3.09
1726 2217 4.007659 CCACTTGGAATAAACGGTTAGCT 58.992 43.478 0.00 0.00 37.39 3.32
1727 2218 5.180271 CCACTTGGAATAAACGGTTAGCTA 58.820 41.667 0.00 0.00 37.39 3.32
1728 2219 5.820947 CCACTTGGAATAAACGGTTAGCTAT 59.179 40.000 0.00 0.00 37.39 2.97
1729 2220 6.018180 CCACTTGGAATAAACGGTTAGCTATC 60.018 42.308 0.00 0.00 37.39 2.08
1730 2221 6.761714 CACTTGGAATAAACGGTTAGCTATCT 59.238 38.462 0.00 0.00 0.00 1.98
1731 2222 6.985059 ACTTGGAATAAACGGTTAGCTATCTC 59.015 38.462 0.00 0.00 0.00 2.75
1732 2223 6.474140 TGGAATAAACGGTTAGCTATCTCA 57.526 37.500 0.00 0.00 0.00 3.27
1733 2224 6.880484 TGGAATAAACGGTTAGCTATCTCAA 58.120 36.000 0.00 0.00 0.00 3.02
1734 2225 7.332557 TGGAATAAACGGTTAGCTATCTCAAA 58.667 34.615 0.00 0.00 0.00 2.69
1735 2226 7.825270 TGGAATAAACGGTTAGCTATCTCAAAA 59.175 33.333 0.00 0.00 0.00 2.44
1736 2227 8.671028 GGAATAAACGGTTAGCTATCTCAAAAA 58.329 33.333 0.00 0.00 0.00 1.94
1737 2228 9.486857 GAATAAACGGTTAGCTATCTCAAAAAC 57.513 33.333 0.00 0.00 0.00 2.43
1738 2229 6.870971 AAACGGTTAGCTATCTCAAAAACA 57.129 33.333 0.00 0.00 0.00 2.83
1739 2230 6.870971 AACGGTTAGCTATCTCAAAAACAA 57.129 33.333 0.00 0.00 0.00 2.83
1740 2231 7.448748 AACGGTTAGCTATCTCAAAAACAAT 57.551 32.000 0.00 0.00 0.00 2.71
1741 2232 7.073342 ACGGTTAGCTATCTCAAAAACAATC 57.927 36.000 0.00 0.00 0.00 2.67
1742 2233 6.653320 ACGGTTAGCTATCTCAAAAACAATCA 59.347 34.615 0.00 0.00 0.00 2.57
1743 2234 7.174253 ACGGTTAGCTATCTCAAAAACAATCAA 59.826 33.333 0.00 0.00 0.00 2.57
1744 2235 7.481798 CGGTTAGCTATCTCAAAAACAATCAAC 59.518 37.037 0.00 0.00 0.00 3.18
1745 2236 8.296713 GGTTAGCTATCTCAAAAACAATCAACA 58.703 33.333 0.00 0.00 0.00 3.33
1746 2237 9.677567 GTTAGCTATCTCAAAAACAATCAACAA 57.322 29.630 0.00 0.00 0.00 2.83
1747 2238 9.677567 TTAGCTATCTCAAAAACAATCAACAAC 57.322 29.630 0.00 0.00 0.00 3.32
1748 2239 7.945134 AGCTATCTCAAAAACAATCAACAACT 58.055 30.769 0.00 0.00 0.00 3.16
1778 2269 4.336433 AGCGATCAATATTTTGGACCAGTG 59.664 41.667 0.00 0.00 33.44 3.66
1779 2270 4.335315 GCGATCAATATTTTGGACCAGTGA 59.665 41.667 0.00 0.00 33.44 3.41
1793 2284 2.076863 CCAGTGACTTGTTTCCGGATC 58.923 52.381 4.15 2.09 0.00 3.36
1860 2359 3.311106 CATCACATGCATTTAATCCGGC 58.689 45.455 0.00 0.00 0.00 6.13
1911 2425 5.335504 GCAAGCTAGATAAGATGGAAATGCC 60.336 44.000 0.00 0.00 37.10 4.40
2007 2525 2.172372 GTCGATCCTGCTGCTGCTG 61.172 63.158 17.00 15.58 40.48 4.41
2008 2526 2.186125 CGATCCTGCTGCTGCTGA 59.814 61.111 21.35 15.40 40.01 4.26
2010 2528 1.499688 CGATCCTGCTGCTGCTGATG 61.500 60.000 21.35 7.94 40.01 3.07
2011 2529 1.787057 GATCCTGCTGCTGCTGATGC 61.787 60.000 21.35 11.09 40.01 3.91
2012 2530 2.272230 ATCCTGCTGCTGCTGATGCT 62.272 55.000 21.35 2.99 40.01 3.79
2079 2597 4.353737 CTCTGAAAGCGATCTCTTCTCAG 58.646 47.826 20.17 20.17 0.00 3.35
2104 2622 8.637099 AGAGGAGAAGGAAAAGAAAAGAAAATG 58.363 33.333 0.00 0.00 0.00 2.32
2250 2779 7.850193 AGTGGCATGATTTTTATTTACATGGT 58.150 30.769 0.00 0.00 38.76 3.55
2290 2819 2.624838 AGTTGCTTTTGAGACATGGGTG 59.375 45.455 0.00 0.00 0.00 4.61
2302 2869 4.406456 AGACATGGGTGCATTTTGTTCTA 58.594 39.130 0.00 0.00 0.00 2.10
2309 2876 5.306678 TGGGTGCATTTTGTTCTATTTTCCT 59.693 36.000 0.00 0.00 0.00 3.36
2388 2959 4.351407 ACGGAGGAAGGTCTATCAGATAGA 59.649 45.833 15.24 15.24 39.46 1.98
2393 2964 7.354751 AGGAAGGTCTATCAGATAGAAACAC 57.645 40.000 19.97 9.49 43.04 3.32
2394 2965 6.039941 AGGAAGGTCTATCAGATAGAAACACG 59.960 42.308 19.97 0.00 43.04 4.49
2437 4055 7.589574 ATTTATGACAATTTTTGTAACCCGC 57.410 32.000 0.00 0.00 45.52 6.13
2452 4070 0.247537 CCCGCGCGTAAATCAGAAAC 60.248 55.000 29.95 0.00 0.00 2.78
2455 4073 1.782285 GCGCGTAAATCAGAAACGAC 58.218 50.000 8.43 0.02 38.89 4.34
2468 4086 9.886132 AAATCAGAAACGACTACCATACTAAAT 57.114 29.630 0.00 0.00 0.00 1.40
2470 4088 8.058667 TCAGAAACGACTACCATACTAAATCA 57.941 34.615 0.00 0.00 0.00 2.57
2471 4089 8.188799 TCAGAAACGACTACCATACTAAATCAG 58.811 37.037 0.00 0.00 0.00 2.90
2473 4091 8.746530 AGAAACGACTACCATACTAAATCAGAA 58.253 33.333 0.00 0.00 0.00 3.02
2474 4092 9.362539 GAAACGACTACCATACTAAATCAGAAA 57.637 33.333 0.00 0.00 0.00 2.52
2475 4093 9.886132 AAACGACTACCATACTAAATCAGAAAT 57.114 29.630 0.00 0.00 0.00 2.17
2476 4094 8.873215 ACGACTACCATACTAAATCAGAAATG 57.127 34.615 0.00 0.00 0.00 2.32
2477 4095 8.475639 ACGACTACCATACTAAATCAGAAATGT 58.524 33.333 0.00 0.00 0.00 2.71
2478 4096 8.755941 CGACTACCATACTAAATCAGAAATGTG 58.244 37.037 0.00 0.00 0.00 3.21
2479 4097 8.438676 ACTACCATACTAAATCAGAAATGTGC 57.561 34.615 0.00 0.00 0.00 4.57
2480 4098 8.267894 ACTACCATACTAAATCAGAAATGTGCT 58.732 33.333 0.00 0.00 0.00 4.40
2841 4495 4.879197 AAGCTTCCATTTTCTCAAAGGG 57.121 40.909 0.00 0.00 44.00 3.95
2877 4535 7.357859 GCATTCGTGAAAGAAAAAGACATCAAG 60.358 37.037 0.00 0.00 33.43 3.02
2935 4612 5.027293 ACCGTTGTTTTAGAACCACTAGT 57.973 39.130 0.00 0.00 34.80 2.57
2939 4616 5.049680 CGTTGTTTTAGAACCACTAGTGCAT 60.050 40.000 17.86 7.84 34.80 3.96
2951 4628 1.960040 TAGTGCATGCCGACCTCTGG 61.960 60.000 16.68 0.00 0.00 3.86
2963 4640 2.757868 CGACCTCTGGAAGTGATCTCTT 59.242 50.000 9.73 9.73 33.76 2.85
2966 4643 3.768757 ACCTCTGGAAGTGATCTCTTCTG 59.231 47.826 27.73 21.93 42.19 3.02
2967 4644 3.132646 CCTCTGGAAGTGATCTCTTCTGG 59.867 52.174 27.73 21.60 42.19 3.86
2971 4654 5.307976 TCTGGAAGTGATCTCTTCTGGAAAA 59.692 40.000 27.73 11.81 42.19 2.29
3006 4690 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
3007 4691 4.466370 CCTCCGTCCCATAATATAAGAGCA 59.534 45.833 0.00 0.00 0.00 4.26
3008 4692 5.129485 CCTCCGTCCCATAATATAAGAGCAT 59.871 44.000 0.00 0.00 0.00 3.79
3073 4802 7.260603 GTCCAAATTTGCATAGACTAAGCATT 58.739 34.615 12.81 3.36 38.19 3.56
3102 4831 3.139077 ACCGCTTTGAAGTTAGTTGAGG 58.861 45.455 0.00 0.00 0.00 3.86
3103 4832 3.139077 CCGCTTTGAAGTTAGTTGAGGT 58.861 45.455 0.00 0.00 0.00 3.85
3193 4922 0.319641 ACTGAACCGGAAGCGAAGTC 60.320 55.000 9.46 0.00 0.00 3.01
3196 4925 1.004918 AACCGGAAGCGAAGTCCAG 60.005 57.895 9.46 0.00 34.56 3.86
3197 4926 2.125512 CCGGAAGCGAAGTCCAGG 60.126 66.667 0.00 0.00 34.56 4.45
3198 4927 2.125512 CGGAAGCGAAGTCCAGGG 60.126 66.667 0.00 0.00 34.56 4.45
3199 4928 2.943978 CGGAAGCGAAGTCCAGGGT 61.944 63.158 0.00 0.00 34.56 4.34
3200 4929 1.375326 GGAAGCGAAGTCCAGGGTT 59.625 57.895 0.00 0.00 35.05 4.11
3219 4948 4.399303 GGGTTGAGGGTTCAATAGTCAATG 59.601 45.833 0.00 0.00 44.62 2.82
3298 5049 5.499139 TTTTCTTCACAAATTCGAGCACT 57.501 34.783 0.00 0.00 0.00 4.40
3315 5066 4.053295 AGCACTTTGACATGTTGAAATGC 58.947 39.130 16.09 16.09 0.00 3.56
3335 5086 7.481275 AATGCGAAATGTTTGACTGATTTTT 57.519 28.000 0.00 0.00 0.00 1.94
3361 5112 2.823196 TGAAAAACAGAGTGCGTGTG 57.177 45.000 0.00 0.00 0.00 3.82
3373 5124 1.330521 GTGCGTGTGACTGACAATTGT 59.669 47.619 11.78 11.78 35.91 2.71
3769 5525 4.953868 CAACGGCGGTGGTCACGA 62.954 66.667 19.01 0.00 0.00 4.35
3777 5533 4.034258 GTGGTCACGACGGCGAGA 62.034 66.667 22.49 14.17 41.64 4.04
3905 5703 0.923403 CATGATCGACGACGTGCAAT 59.077 50.000 4.58 0.00 40.69 3.56
3912 5710 1.324435 CGACGACGTGCAATGATTCAT 59.676 47.619 4.58 0.00 34.56 2.57
3916 5714 2.347568 CGACGTGCAATGATTCATACCG 60.348 50.000 0.00 3.16 0.00 4.02
3923 5721 6.074034 CGTGCAATGATTCATACCGTATTACA 60.074 38.462 0.00 0.00 0.00 2.41
3930 5728 3.644823 TCATACCGTATTACACCATGCG 58.355 45.455 0.00 0.00 32.58 4.73
3934 5732 1.595794 CCGTATTACACCATGCGTTCC 59.404 52.381 0.00 0.00 30.99 3.62
3939 5737 0.390603 TACACCATGCGTTCCCGAAG 60.391 55.000 0.00 0.00 35.63 3.79
3943 5741 1.361668 CCATGCGTTCCCGAAGACAG 61.362 60.000 0.00 0.00 35.63 3.51
3944 5742 0.389817 CATGCGTTCCCGAAGACAGA 60.390 55.000 0.00 0.00 35.63 3.41
3945 5743 0.320374 ATGCGTTCCCGAAGACAGAA 59.680 50.000 0.00 0.00 35.63 3.02
3946 5744 0.599204 TGCGTTCCCGAAGACAGAAC 60.599 55.000 0.00 0.00 37.20 3.01
4002 5801 8.685427 CATACATTGTGATAAGAAATGGTTGGA 58.315 33.333 0.00 0.00 35.95 3.53
4064 5898 5.104109 TCAGAACTTCTTTTCCTCCCAAAGA 60.104 40.000 0.00 0.00 38.27 2.52
4070 5904 6.435591 ACTTCTTTTCCTCCCAAAGATCATTC 59.564 38.462 0.00 0.00 39.46 2.67
4079 5913 3.094572 CCAAAGATCATTCACAGGGCTT 58.905 45.455 0.00 0.00 0.00 4.35
4141 5975 3.488310 CAGCAGCTCAATTCAAACAACAC 59.512 43.478 0.00 0.00 0.00 3.32
4146 5980 3.732721 GCTCAATTCAAACAACACTGAGC 59.267 43.478 5.50 5.50 45.12 4.26
4147 5981 3.951306 TCAATTCAAACAACACTGAGCG 58.049 40.909 0.00 0.00 0.00 5.03
4162 6004 1.557651 GAGCGTAAGTTCGACATCCC 58.442 55.000 0.00 0.00 37.98 3.85
4185 6027 3.133721 AGAGAAATCTAGCGCACCTTCAT 59.866 43.478 11.47 0.00 0.00 2.57
4189 6031 1.480789 TCTAGCGCACCTTCATACCA 58.519 50.000 11.47 0.00 0.00 3.25
4192 6034 1.745115 GCGCACCTTCATACCAGCA 60.745 57.895 0.30 0.00 0.00 4.41
4198 6040 3.005791 GCACCTTCATACCAGCAAAAAGT 59.994 43.478 0.00 0.00 0.00 2.66
4199 6041 4.217550 GCACCTTCATACCAGCAAAAAGTA 59.782 41.667 0.00 0.00 0.00 2.24
4262 6104 3.120269 ACAATTTTATCCGTAACGCGCAA 60.120 39.130 5.73 0.00 39.71 4.85
4288 6134 0.239347 AACTCATCGCAAACTGCTGC 59.761 50.000 0.00 0.00 42.25 5.25
4311 6157 5.498159 CCGTATGAACAACAACAATATCGG 58.502 41.667 0.00 0.00 0.00 4.18
4367 6213 3.902881 TCTTCTTCTCCTTCAGATGGC 57.097 47.619 0.00 0.00 0.00 4.40
4394 6240 3.981071 TCCTTGAACCATGTGTAGAGG 57.019 47.619 0.00 0.00 0.00 3.69
4433 6279 2.064014 ACGTTCTTGTAGCCGTTTAGC 58.936 47.619 0.00 0.00 0.00 3.09
4468 6314 0.392336 GCTATCAGAGACCTGCCAGG 59.608 60.000 9.83 9.83 42.49 4.45
4483 6330 1.475034 GCCAGGGTCGAAGCATAATCA 60.475 52.381 0.00 0.00 0.00 2.57
4487 6334 4.442893 CCAGGGTCGAAGCATAATCAACTA 60.443 45.833 0.00 0.00 0.00 2.24
4489 6336 5.584649 CAGGGTCGAAGCATAATCAACTAAA 59.415 40.000 0.00 0.00 0.00 1.85
4515 6362 3.674997 ACATCGGTGCTCACAAGTTTAT 58.325 40.909 0.00 0.00 0.00 1.40
4769 6624 6.381420 TGTGATTTACCAACCTGGAAAAAGAA 59.619 34.615 0.00 0.00 40.96 2.52
4770 6625 7.093289 TGTGATTTACCAACCTGGAAAAAGAAA 60.093 33.333 0.00 0.00 40.96 2.52
4771 6626 7.766738 GTGATTTACCAACCTGGAAAAAGAAAA 59.233 33.333 0.00 0.00 40.96 2.29
4772 6627 8.322091 TGATTTACCAACCTGGAAAAAGAAAAA 58.678 29.630 0.00 0.00 40.96 1.94
4791 6646 5.333566 AAAAACTACTCCCTCCATTCCAA 57.666 39.130 0.00 0.00 0.00 3.53
4792 6647 5.333566 AAAACTACTCCCTCCATTCCAAA 57.666 39.130 0.00 0.00 0.00 3.28
4793 6648 5.333566 AAACTACTCCCTCCATTCCAAAA 57.666 39.130 0.00 0.00 0.00 2.44
4794 6649 5.536497 AACTACTCCCTCCATTCCAAAAT 57.464 39.130 0.00 0.00 0.00 1.82
4795 6650 6.652205 AACTACTCCCTCCATTCCAAAATA 57.348 37.500 0.00 0.00 0.00 1.40
4796 6651 6.652205 ACTACTCCCTCCATTCCAAAATAA 57.348 37.500 0.00 0.00 0.00 1.40
4797 6652 6.663734 ACTACTCCCTCCATTCCAAAATAAG 58.336 40.000 0.00 0.00 0.00 1.73
4798 6653 5.536497 ACTCCCTCCATTCCAAAATAAGT 57.464 39.130 0.00 0.00 0.00 2.24
4799 6654 5.264395 ACTCCCTCCATTCCAAAATAAGTG 58.736 41.667 0.00 0.00 0.00 3.16
4800 6655 5.222337 ACTCCCTCCATTCCAAAATAAGTGT 60.222 40.000 0.00 0.00 0.00 3.55
4801 6656 5.261216 TCCCTCCATTCCAAAATAAGTGTC 58.739 41.667 0.00 0.00 0.00 3.67
4802 6657 5.016173 CCCTCCATTCCAAAATAAGTGTCA 58.984 41.667 0.00 0.00 0.00 3.58
4803 6658 5.658190 CCCTCCATTCCAAAATAAGTGTCAT 59.342 40.000 0.00 0.00 0.00 3.06
4804 6659 6.406177 CCCTCCATTCCAAAATAAGTGTCATG 60.406 42.308 0.00 0.00 0.00 3.07
4805 6660 6.406177 CCTCCATTCCAAAATAAGTGTCATGG 60.406 42.308 0.00 0.00 0.00 3.66
4806 6661 6.015918 TCCATTCCAAAATAAGTGTCATGGT 58.984 36.000 0.00 0.00 32.13 3.55
4807 6662 6.496565 TCCATTCCAAAATAAGTGTCATGGTT 59.503 34.615 0.00 0.00 32.13 3.67
4808 6663 7.016072 TCCATTCCAAAATAAGTGTCATGGTTT 59.984 33.333 0.00 0.00 32.13 3.27
4809 6664 7.661027 CCATTCCAAAATAAGTGTCATGGTTTT 59.339 33.333 0.00 0.00 0.00 2.43
4810 6665 9.703892 CATTCCAAAATAAGTGTCATGGTTTTA 57.296 29.630 0.00 0.00 0.00 1.52
4811 6666 9.927668 ATTCCAAAATAAGTGTCATGGTTTTAG 57.072 29.630 0.00 0.00 0.00 1.85
4812 6667 8.472007 TCCAAAATAAGTGTCATGGTTTTAGT 57.528 30.769 0.00 0.00 0.00 2.24
4813 6668 8.919145 TCCAAAATAAGTGTCATGGTTTTAGTT 58.081 29.630 0.00 0.00 0.00 2.24
4814 6669 9.191995 CCAAAATAAGTGTCATGGTTTTAGTTC 57.808 33.333 0.00 0.00 0.00 3.01
4815 6670 9.743057 CAAAATAAGTGTCATGGTTTTAGTTCA 57.257 29.630 0.00 0.00 0.00 3.18
4819 6674 9.912634 ATAAGTGTCATGGTTTTAGTTCAATTG 57.087 29.630 0.00 0.00 0.00 2.32
4820 6675 6.748132 AGTGTCATGGTTTTAGTTCAATTGG 58.252 36.000 5.42 0.00 0.00 3.16
4821 6676 6.549364 AGTGTCATGGTTTTAGTTCAATTGGA 59.451 34.615 5.42 0.00 0.00 3.53
4822 6677 7.069331 AGTGTCATGGTTTTAGTTCAATTGGAA 59.931 33.333 5.42 0.00 0.00 3.53
4830 6685 2.194201 GTTCAATTGGAACGGAGGGA 57.806 50.000 5.42 0.00 45.82 4.20
4831 6686 2.084546 GTTCAATTGGAACGGAGGGAG 58.915 52.381 5.42 0.00 45.82 4.30
4832 6687 1.358152 TCAATTGGAACGGAGGGAGT 58.642 50.000 5.42 0.00 0.00 3.85
4833 6688 2.542550 TCAATTGGAACGGAGGGAGTA 58.457 47.619 5.42 0.00 0.00 2.59
4834 6689 2.907696 TCAATTGGAACGGAGGGAGTAA 59.092 45.455 5.42 0.00 0.00 2.24
4835 6690 3.521937 TCAATTGGAACGGAGGGAGTAAT 59.478 43.478 5.42 0.00 0.00 1.89
4836 6691 4.717778 TCAATTGGAACGGAGGGAGTAATA 59.282 41.667 5.42 0.00 0.00 0.98
4837 6692 5.368523 TCAATTGGAACGGAGGGAGTAATAT 59.631 40.000 5.42 0.00 0.00 1.28
4838 6693 4.950205 TTGGAACGGAGGGAGTAATATC 57.050 45.455 0.00 0.00 0.00 1.63
4839 6694 4.194678 TGGAACGGAGGGAGTAATATCT 57.805 45.455 0.00 0.00 0.00 1.98
4840 6695 5.329191 TGGAACGGAGGGAGTAATATCTA 57.671 43.478 0.00 0.00 0.00 1.98
4841 6696 5.708544 TGGAACGGAGGGAGTAATATCTAA 58.291 41.667 0.00 0.00 0.00 2.10
4842 6697 6.138263 TGGAACGGAGGGAGTAATATCTAAA 58.862 40.000 0.00 0.00 0.00 1.85
4843 6698 6.785963 TGGAACGGAGGGAGTAATATCTAAAT 59.214 38.462 0.00 0.00 0.00 1.40
4844 6699 7.039223 TGGAACGGAGGGAGTAATATCTAAATC 60.039 40.741 0.00 0.00 0.00 2.17
4845 6700 7.178805 GGAACGGAGGGAGTAATATCTAAATCT 59.821 40.741 0.00 0.00 0.00 2.40
4846 6701 7.706100 ACGGAGGGAGTAATATCTAAATCTC 57.294 40.000 0.00 0.00 0.00 2.75
4847 6702 7.239438 ACGGAGGGAGTAATATCTAAATCTCA 58.761 38.462 0.00 0.00 0.00 3.27
4848 6703 7.728981 ACGGAGGGAGTAATATCTAAATCTCAA 59.271 37.037 0.00 0.00 0.00 3.02
4849 6704 8.754080 CGGAGGGAGTAATATCTAAATCTCAAT 58.246 37.037 0.00 0.00 0.00 2.57
4850 6705 9.883142 GGAGGGAGTAATATCTAAATCTCAATG 57.117 37.037 0.00 0.00 0.00 2.82
4851 6706 9.883142 GAGGGAGTAATATCTAAATCTCAATGG 57.117 37.037 0.00 0.00 0.00 3.16
4852 6707 9.398921 AGGGAGTAATATCTAAATCTCAATGGT 57.601 33.333 0.00 0.00 0.00 3.55
4853 6708 9.660180 GGGAGTAATATCTAAATCTCAATGGTC 57.340 37.037 0.00 0.00 0.00 4.02
4860 6715 9.685276 ATATCTAAATCTCAATGGTCAAACACA 57.315 29.630 0.00 0.00 0.00 3.72
4861 6716 8.585471 ATCTAAATCTCAATGGTCAAACACAT 57.415 30.769 0.00 0.00 0.00 3.21
4862 6717 8.044060 TCTAAATCTCAATGGTCAAACACATC 57.956 34.615 0.00 0.00 0.00 3.06
4863 6718 6.653526 AAATCTCAATGGTCAAACACATCA 57.346 33.333 0.00 0.00 0.00 3.07
4864 6719 6.653526 AATCTCAATGGTCAAACACATCAA 57.346 33.333 0.00 0.00 0.00 2.57
4865 6720 5.694231 TCTCAATGGTCAAACACATCAAG 57.306 39.130 0.00 0.00 0.00 3.02
4866 6721 5.375773 TCTCAATGGTCAAACACATCAAGA 58.624 37.500 0.00 0.00 0.00 3.02
4867 6722 5.827267 TCTCAATGGTCAAACACATCAAGAA 59.173 36.000 0.00 0.00 0.00 2.52
4868 6723 6.320926 TCTCAATGGTCAAACACATCAAGAAA 59.679 34.615 0.00 0.00 0.00 2.52
4869 6724 7.014518 TCTCAATGGTCAAACACATCAAGAAAT 59.985 33.333 0.00 0.00 0.00 2.17
4870 6725 6.924612 TCAATGGTCAAACACATCAAGAAATG 59.075 34.615 0.00 0.00 0.00 2.32
4871 6726 6.653526 ATGGTCAAACACATCAAGAAATGA 57.346 33.333 0.00 0.00 43.67 2.57
4872 6727 6.075762 TGGTCAAACACATCAAGAAATGAG 57.924 37.500 0.00 0.00 42.53 2.90
4873 6728 5.827267 TGGTCAAACACATCAAGAAATGAGA 59.173 36.000 0.00 0.00 42.53 3.27
4874 6729 6.016860 TGGTCAAACACATCAAGAAATGAGAG 60.017 38.462 0.00 0.00 42.53 3.20
4875 6730 5.855395 GTCAAACACATCAAGAAATGAGAGC 59.145 40.000 0.00 0.00 42.53 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.447314 GAGTAACTCCAACGGGCCG 60.447 63.158 27.06 27.06 0.00 6.13
2 3 0.323957 AAGAGTAACTCCAACGGGCC 59.676 55.000 0.00 0.00 0.00 5.80
3 4 2.418334 CCTAAGAGTAACTCCAACGGGC 60.418 54.545 0.00 0.00 0.00 6.13
4 5 2.830321 ACCTAAGAGTAACTCCAACGGG 59.170 50.000 0.00 0.00 0.00 5.28
5 6 3.846360 CACCTAAGAGTAACTCCAACGG 58.154 50.000 0.00 0.00 0.00 4.44
6 7 3.251571 GCACCTAAGAGTAACTCCAACG 58.748 50.000 0.00 0.00 0.00 4.10
7 8 3.597255 GGCACCTAAGAGTAACTCCAAC 58.403 50.000 0.00 0.00 0.00 3.77
8 9 2.232941 CGGCACCTAAGAGTAACTCCAA 59.767 50.000 0.00 0.00 0.00 3.53
9 10 1.822990 CGGCACCTAAGAGTAACTCCA 59.177 52.381 0.00 0.00 0.00 3.86
10 11 1.823610 ACGGCACCTAAGAGTAACTCC 59.176 52.381 0.00 0.00 0.00 3.85
11 12 4.708726 TTACGGCACCTAAGAGTAACTC 57.291 45.455 0.00 0.00 0.00 3.01
12 13 5.473066 TTTTACGGCACCTAAGAGTAACT 57.527 39.130 0.00 0.00 0.00 2.24
39 40 6.382570 AGATCTTAATGTCTTCTAGCACCTGT 59.617 38.462 0.00 0.00 0.00 4.00
50 51 9.427821 ACTACCATGTCTAGATCTTAATGTCTT 57.572 33.333 0.00 0.00 0.00 3.01
71 72 4.153475 TCAGAAAATACGCAAAGCACTACC 59.847 41.667 0.00 0.00 0.00 3.18
74 75 4.436050 CGATCAGAAAATACGCAAAGCACT 60.436 41.667 0.00 0.00 0.00 4.40
75 76 3.780801 CGATCAGAAAATACGCAAAGCAC 59.219 43.478 0.00 0.00 0.00 4.40
77 78 4.003519 ACGATCAGAAAATACGCAAAGC 57.996 40.909 0.00 0.00 0.00 3.51
78 79 5.191059 GCTACGATCAGAAAATACGCAAAG 58.809 41.667 0.00 0.00 0.00 2.77
81 82 3.776340 TGCTACGATCAGAAAATACGCA 58.224 40.909 0.00 0.00 0.00 5.24
82 83 4.444388 TCATGCTACGATCAGAAAATACGC 59.556 41.667 0.00 0.00 0.00 4.42
83 84 6.346120 CCTTCATGCTACGATCAGAAAATACG 60.346 42.308 0.00 0.00 0.00 3.06
109 110 1.559814 CGATAGTGCGCCATGAACG 59.440 57.895 4.18 0.00 0.00 3.95
124 125 5.355350 CCCTGCATAAAAAGAAAGAGACGAT 59.645 40.000 0.00 0.00 0.00 3.73
134 135 5.497474 GAGGTACTTCCCTGCATAAAAAGA 58.503 41.667 0.00 0.00 41.55 2.52
135 136 4.332819 CGAGGTACTTCCCTGCATAAAAAG 59.667 45.833 0.00 0.00 41.55 2.27
136 137 4.258543 CGAGGTACTTCCCTGCATAAAAA 58.741 43.478 0.00 0.00 41.55 1.94
138 139 2.419574 GCGAGGTACTTCCCTGCATAAA 60.420 50.000 0.00 0.00 41.55 1.40
141 142 1.522569 GCGAGGTACTTCCCTGCAT 59.477 57.895 0.00 0.00 41.55 3.96
143 144 2.187163 GGCGAGGTACTTCCCTGC 59.813 66.667 0.00 0.00 41.55 4.85
144 145 2.494918 CGGCGAGGTACTTCCCTG 59.505 66.667 0.00 0.00 41.55 4.45
145 146 2.758737 CCGGCGAGGTACTTCCCT 60.759 66.667 9.30 0.00 41.55 4.20
146 147 4.525949 GCCGGCGAGGTACTTCCC 62.526 72.222 12.58 1.37 41.55 3.97
147 148 4.525949 GGCCGGCGAGGTACTTCC 62.526 72.222 22.54 0.00 41.55 3.46
148 149 4.867599 CGGCCGGCGAGGTACTTC 62.868 72.222 22.54 1.28 41.55 3.01
187 201 2.176273 GCAGCCGGAGCACACTATG 61.176 63.158 5.05 0.00 43.56 2.23
188 202 2.187946 GCAGCCGGAGCACACTAT 59.812 61.111 5.05 0.00 43.56 2.12
191 205 4.385405 AGAGCAGCCGGAGCACAC 62.385 66.667 19.59 11.12 43.56 3.82
213 227 1.278413 GGCTCCTTTCCCTTTCGTAGT 59.722 52.381 0.00 0.00 0.00 2.73
215 229 1.278127 CTGGCTCCTTTCCCTTTCGTA 59.722 52.381 0.00 0.00 0.00 3.43
219 233 0.251519 CTGCTGGCTCCTTTCCCTTT 60.252 55.000 0.00 0.00 0.00 3.11
294 308 3.129502 TGCTACTCCGTCCGTCCG 61.130 66.667 0.00 0.00 0.00 4.79
295 309 2.488820 GTGCTACTCCGTCCGTCC 59.511 66.667 0.00 0.00 0.00 4.79
296 310 2.488820 GGTGCTACTCCGTCCGTC 59.511 66.667 0.00 0.00 0.00 4.79
297 311 3.437795 CGGTGCTACTCCGTCCGT 61.438 66.667 0.13 0.00 42.62 4.69
310 324 2.852413 CAGAACGATAACTGCTACGGTG 59.148 50.000 0.00 0.00 0.00 4.94
326 340 1.661341 ATCAATCCGCTCTGCAGAAC 58.339 50.000 18.85 12.84 0.00 3.01
393 407 2.031682 CACGCTACGTATAGTACCACCC 60.032 54.545 0.00 0.00 38.32 4.61
394 408 2.603173 GCACGCTACGTATAGTACCACC 60.603 54.545 0.00 0.00 38.32 4.61
397 411 1.261619 ACGCACGCTACGTATAGTACC 59.738 52.381 0.00 0.00 43.02 3.34
402 416 0.179169 TTGCACGCACGCTACGTATA 60.179 50.000 0.00 0.00 42.96 1.47
403 417 1.410737 CTTGCACGCACGCTACGTAT 61.411 55.000 0.00 0.00 42.96 3.06
531 585 9.862149 ACTCCTTCCTTTTCTCTTTATGTTTTA 57.138 29.630 0.00 0.00 0.00 1.52
536 590 7.065204 GTGCTACTCCTTCCTTTTCTCTTTATG 59.935 40.741 0.00 0.00 0.00 1.90
538 592 6.465084 GTGCTACTCCTTCCTTTTCTCTTTA 58.535 40.000 0.00 0.00 0.00 1.85
540 594 4.561734 CGTGCTACTCCTTCCTTTTCTCTT 60.562 45.833 0.00 0.00 0.00 2.85
551 605 3.649277 CTGCCGCGTGCTACTCCTT 62.649 63.158 18.14 0.00 42.00 3.36
581 893 2.334653 GGAGGATCTCTGCGCGAG 59.665 66.667 12.10 18.94 41.30 5.03
614 930 3.343421 GTGTTCCGTGCGTGTCCC 61.343 66.667 0.00 0.00 0.00 4.46
717 1033 0.106217 GAGGAGGAGGAGGAGGACAG 60.106 65.000 0.00 0.00 0.00 3.51
718 1034 1.585651 GGAGGAGGAGGAGGAGGACA 61.586 65.000 0.00 0.00 0.00 4.02
719 1035 1.231928 GGAGGAGGAGGAGGAGGAC 59.768 68.421 0.00 0.00 0.00 3.85
747 1068 3.433984 ATGTGGTGCTGGTGTGGCA 62.434 57.895 0.00 0.00 37.36 4.92
748 1069 2.598394 ATGTGGTGCTGGTGTGGC 60.598 61.111 0.00 0.00 0.00 5.01
749 1070 1.973281 GGATGTGGTGCTGGTGTGG 60.973 63.158 0.00 0.00 0.00 4.17
750 1071 0.324614 TAGGATGTGGTGCTGGTGTG 59.675 55.000 0.00 0.00 0.00 3.82
751 1072 0.615331 CTAGGATGTGGTGCTGGTGT 59.385 55.000 0.00 0.00 0.00 4.16
809 1146 7.931015 AGGTGTCTATAAATCCCAATCAGTA 57.069 36.000 0.00 0.00 0.00 2.74
811 1148 8.525290 AAAAGGTGTCTATAAATCCCAATCAG 57.475 34.615 0.00 0.00 0.00 2.90
870 1207 2.371179 TGATGATGGCCTCTTCTGGATC 59.629 50.000 3.32 0.00 0.00 3.36
882 1219 3.560882 CCCCTTTATCCTCTGATGATGGC 60.561 52.174 5.79 0.00 33.09 4.40
903 1240 1.374758 CTCGCCTGTCTTGGTCACC 60.375 63.158 0.00 0.00 0.00 4.02
936 1273 2.744202 TCGAGCAAATGAAGAAGCCTTC 59.256 45.455 0.00 0.00 46.89 3.46
941 1278 4.505556 TCGATGATCGAGCAAATGAAGAAG 59.494 41.667 14.25 0.00 44.82 2.85
963 1301 2.609350 CTGACTGCAGCTCTTCTTCTC 58.391 52.381 15.27 0.46 34.95 2.87
985 1324 2.524204 CCATGGCTAGCTCCCTCCC 61.524 68.421 15.72 0.00 0.00 4.30
1150 1489 2.297597 ACTTGGAGTCGAGGAAGAACTG 59.702 50.000 0.00 0.00 0.00 3.16
1233 1572 2.512515 GCGGTGTCCCAGATCTGC 60.513 66.667 17.76 4.54 0.00 4.26
1254 1593 1.063811 GCGTACGTACCTCTCCTGC 59.936 63.158 19.67 11.40 0.00 4.85
1268 1607 2.759560 GACGGGGTTAGGGGCGTA 60.760 66.667 0.00 0.00 0.00 4.42
1275 1614 1.112950 GAGGAGGAAGACGGGGTTAG 58.887 60.000 0.00 0.00 0.00 2.34
1325 1706 5.407084 TGCGATCGAGAAATTCAAAACAGTA 59.593 36.000 21.57 0.00 0.00 2.74
1374 1805 0.179129 GTGCCGCCCAGAATTTCATG 60.179 55.000 0.00 0.00 0.00 3.07
1408 1844 1.855978 CAGCACGTCACGTAGTTTGAA 59.144 47.619 0.41 0.00 41.61 2.69
1412 1848 0.318445 GACCAGCACGTCACGTAGTT 60.318 55.000 0.41 0.00 41.61 2.24
1413 1849 2.756731 ATGACCAGCACGTCACGTAGT 61.757 52.381 0.41 0.00 45.19 2.73
1414 1850 0.109272 ATGACCAGCACGTCACGTAG 60.109 55.000 0.41 0.00 45.19 3.51
1472 1931 1.815408 GCTCTGGCACCAACAAGAGAA 60.815 52.381 7.62 0.00 38.54 2.87
1500 1959 7.218773 GTGTATGTATGTATGCAGCAAAGTTTG 59.781 37.037 11.41 11.41 0.00 2.93
1516 1975 9.869844 GCTAAAGATTAAGCAAGTGTATGTATG 57.130 33.333 0.00 0.00 38.63 2.39
1545 2004 4.579869 CTTTGGAAAGAAGGTGCTAGCTA 58.420 43.478 17.23 0.00 38.28 3.32
1547 2006 2.095008 GCTTTGGAAAGAAGGTGCTAGC 60.095 50.000 8.10 8.10 38.28 3.42
1550 2009 2.371658 AGCTTTGGAAAGAAGGTGCT 57.628 45.000 3.23 0.00 38.28 4.40
1551 2010 3.459232 AAAGCTTTGGAAAGAAGGTGC 57.541 42.857 11.80 0.00 38.28 5.01
1552 2011 5.774498 ACTAAAGCTTTGGAAAGAAGGTG 57.226 39.130 27.09 3.86 38.28 4.00
1571 2059 4.896482 AGCCACCCAATGTTTGTAAAACTA 59.104 37.500 4.65 0.00 0.00 2.24
1572 2060 3.709141 AGCCACCCAATGTTTGTAAAACT 59.291 39.130 4.65 0.00 0.00 2.66
1573 2061 4.055360 GAGCCACCCAATGTTTGTAAAAC 58.945 43.478 0.00 0.00 0.00 2.43
1575 2063 3.320541 CAGAGCCACCCAATGTTTGTAAA 59.679 43.478 0.00 0.00 0.00 2.01
1576 2064 2.890311 CAGAGCCACCCAATGTTTGTAA 59.110 45.455 0.00 0.00 0.00 2.41
1577 2065 2.158534 ACAGAGCCACCCAATGTTTGTA 60.159 45.455 0.00 0.00 0.00 2.41
1579 2067 1.331214 ACAGAGCCACCCAATGTTTG 58.669 50.000 0.00 0.00 0.00 2.93
1583 2071 2.359900 GAACTACAGAGCCACCCAATG 58.640 52.381 0.00 0.00 0.00 2.82
1599 2090 0.106918 TGTTTGTCCTTGGCGGAACT 60.107 50.000 0.00 0.00 45.32 3.01
1629 2120 3.305110 GGCCAAATACAGAAAACACGTG 58.695 45.455 15.48 15.48 0.00 4.49
1674 2165 1.374343 ATCGCTCTTGGCTGCATGTG 61.374 55.000 0.50 0.00 39.13 3.21
1681 2172 5.758784 GGTAAAATACTAATCGCTCTTGGCT 59.241 40.000 0.00 0.00 39.13 4.75
1689 2180 6.913873 TCCAAGTGGTAAAATACTAATCGC 57.086 37.500 0.00 0.00 36.34 4.58
1694 2185 9.165035 CCGTTTATTCCAAGTGGTAAAATACTA 57.835 33.333 0.00 0.00 36.34 1.82
1698 2189 6.904463 ACCGTTTATTCCAAGTGGTAAAAT 57.096 33.333 0.00 0.00 36.34 1.82
1703 2194 3.754850 GCTAACCGTTTATTCCAAGTGGT 59.245 43.478 0.00 0.00 36.34 4.16
1704 2195 4.007659 AGCTAACCGTTTATTCCAAGTGG 58.992 43.478 0.00 0.00 0.00 4.00
1705 2196 6.761714 AGATAGCTAACCGTTTATTCCAAGTG 59.238 38.462 0.00 0.00 0.00 3.16
1706 2197 6.885922 AGATAGCTAACCGTTTATTCCAAGT 58.114 36.000 0.00 0.00 0.00 3.16
1707 2198 6.984474 TGAGATAGCTAACCGTTTATTCCAAG 59.016 38.462 0.00 0.00 0.00 3.61
1708 2199 6.880484 TGAGATAGCTAACCGTTTATTCCAA 58.120 36.000 0.00 0.00 0.00 3.53
1709 2200 6.474140 TGAGATAGCTAACCGTTTATTCCA 57.526 37.500 0.00 0.00 0.00 3.53
1710 2201 7.781548 TTTGAGATAGCTAACCGTTTATTCC 57.218 36.000 0.00 0.00 0.00 3.01
1711 2202 9.486857 GTTTTTGAGATAGCTAACCGTTTATTC 57.513 33.333 0.00 0.00 0.00 1.75
1712 2203 9.005777 TGTTTTTGAGATAGCTAACCGTTTATT 57.994 29.630 0.00 0.00 0.00 1.40
1713 2204 8.556213 TGTTTTTGAGATAGCTAACCGTTTAT 57.444 30.769 0.00 0.00 0.00 1.40
1714 2205 7.966246 TGTTTTTGAGATAGCTAACCGTTTA 57.034 32.000 0.00 0.00 0.00 2.01
1715 2206 6.870971 TGTTTTTGAGATAGCTAACCGTTT 57.129 33.333 0.00 0.00 0.00 3.60
1716 2207 6.870971 TTGTTTTTGAGATAGCTAACCGTT 57.129 33.333 0.00 0.00 0.00 4.44
1717 2208 6.653320 TGATTGTTTTTGAGATAGCTAACCGT 59.347 34.615 0.00 0.00 0.00 4.83
1718 2209 7.072177 TGATTGTTTTTGAGATAGCTAACCG 57.928 36.000 0.00 0.00 0.00 4.44
1719 2210 8.296713 TGTTGATTGTTTTTGAGATAGCTAACC 58.703 33.333 0.00 0.00 0.00 2.85
1720 2211 9.677567 TTGTTGATTGTTTTTGAGATAGCTAAC 57.322 29.630 0.00 0.00 0.00 2.34
1721 2212 9.677567 GTTGTTGATTGTTTTTGAGATAGCTAA 57.322 29.630 0.00 0.00 0.00 3.09
1722 2213 9.066892 AGTTGTTGATTGTTTTTGAGATAGCTA 57.933 29.630 0.00 0.00 0.00 3.32
1723 2214 7.945134 AGTTGTTGATTGTTTTTGAGATAGCT 58.055 30.769 0.00 0.00 0.00 3.32
1724 2215 9.677567 TTAGTTGTTGATTGTTTTTGAGATAGC 57.322 29.630 0.00 0.00 0.00 2.97
1755 2246 4.336433 CACTGGTCCAAAATATTGATCGCT 59.664 41.667 0.00 0.00 38.94 4.93
1756 2247 4.335315 TCACTGGTCCAAAATATTGATCGC 59.665 41.667 0.00 0.00 38.94 4.58
1761 2252 6.331369 ACAAGTCACTGGTCCAAAATATTG 57.669 37.500 0.00 0.00 36.25 1.90
1763 2254 6.015434 GGAAACAAGTCACTGGTCCAAAATAT 60.015 38.462 0.00 0.00 0.00 1.28
1778 2269 1.679032 CCCCTGATCCGGAAACAAGTC 60.679 57.143 9.01 0.00 0.00 3.01
1779 2270 0.328258 CCCCTGATCCGGAAACAAGT 59.672 55.000 9.01 0.00 0.00 3.16
1793 2284 1.857318 CTCGATCGACCGATCCCCTG 61.857 65.000 22.02 11.26 45.95 4.45
1860 2359 1.262417 CGCTGATCCATTTGGTGATCG 59.738 52.381 0.00 0.00 36.34 3.69
1911 2425 0.247736 AGAAAGCTGCCTACCACTCG 59.752 55.000 0.00 0.00 0.00 4.18
1979 2493 3.272334 GGATCGACATGTGGCCGC 61.272 66.667 10.11 10.11 0.00 6.53
2007 2525 3.564644 TCGTCCTTACTACTAGCAGCATC 59.435 47.826 0.00 0.00 0.00 3.91
2008 2526 3.552875 TCGTCCTTACTACTAGCAGCAT 58.447 45.455 0.00 0.00 0.00 3.79
2010 2528 4.276431 AGAATCGTCCTTACTACTAGCAGC 59.724 45.833 0.00 0.00 0.00 5.25
2011 2529 6.038382 TGAAGAATCGTCCTTACTACTAGCAG 59.962 42.308 0.00 0.00 0.00 4.24
2012 2530 5.884232 TGAAGAATCGTCCTTACTACTAGCA 59.116 40.000 0.00 0.00 0.00 3.49
2014 2532 6.513720 GCCTGAAGAATCGTCCTTACTACTAG 60.514 46.154 0.00 0.00 0.00 2.57
2015 2533 5.298777 GCCTGAAGAATCGTCCTTACTACTA 59.701 44.000 0.00 0.00 0.00 1.82
2016 2534 4.098196 GCCTGAAGAATCGTCCTTACTACT 59.902 45.833 0.00 0.00 0.00 2.57
2017 2535 4.361420 GCCTGAAGAATCGTCCTTACTAC 58.639 47.826 0.00 0.00 0.00 2.73
2018 2536 3.383825 GGCCTGAAGAATCGTCCTTACTA 59.616 47.826 0.00 0.00 0.00 1.82
2019 2537 2.168728 GGCCTGAAGAATCGTCCTTACT 59.831 50.000 0.00 0.00 0.00 2.24
2020 2538 2.093658 TGGCCTGAAGAATCGTCCTTAC 60.094 50.000 3.32 0.00 0.00 2.34
2079 2597 7.383572 GCATTTTCTTTTCTTTTCCTTCTCCTC 59.616 37.037 0.00 0.00 0.00 3.71
2088 2606 6.614371 GCGCAGTAGCATTTTCTTTTCTTTTC 60.614 38.462 0.30 0.00 42.27 2.29
2092 2610 3.366374 GGCGCAGTAGCATTTTCTTTTCT 60.366 43.478 10.83 0.00 42.27 2.52
2104 2622 1.369839 GGAGGAAAAGGCGCAGTAGC 61.370 60.000 10.83 0.00 37.42 3.58
2227 2748 9.160496 GAAACCATGTAAATAAAAATCATGCCA 57.840 29.630 0.00 0.00 35.85 4.92
2250 2779 5.470098 GCAACTCCAGTGACATCTAAAGAAA 59.530 40.000 0.00 0.00 0.00 2.52
2388 2959 8.578448 TTATTTTAGTTTATAGGGGCGTGTTT 57.422 30.769 0.00 0.00 0.00 2.83
2430 4048 0.173029 TCTGATTTACGCGCGGGTTA 59.827 50.000 33.93 22.81 0.00 2.85
2431 4049 0.671163 TTCTGATTTACGCGCGGGTT 60.671 50.000 33.93 16.82 0.00 4.11
2435 4053 0.364180 TCGTTTCTGATTTACGCGCG 59.636 50.000 30.96 30.96 35.40 6.86
2437 4055 3.001365 GGTAGTCGTTTCTGATTTACGCG 60.001 47.826 3.53 3.53 35.40 6.01
2452 4070 8.755941 CACATTTCTGATTTAGTATGGTAGTCG 58.244 37.037 0.00 0.00 0.00 4.18
2455 4073 8.554528 CAGCACATTTCTGATTTAGTATGGTAG 58.445 37.037 0.00 0.00 33.54 3.18
2491 4136 8.936864 ACTACTAGTGTGAAAGTCATAAAATGC 58.063 33.333 5.39 0.00 0.00 3.56
2553 4200 7.425224 ACTCTAGTCATAGGCACAAATAAGT 57.575 36.000 0.00 0.00 0.00 2.24
2777 4431 7.172190 TGACAAACAGATTCTCTCTTTGATGAC 59.828 37.037 10.55 2.74 35.33 3.06
2788 4442 4.022935 TGCCACATTGACAAACAGATTCTC 60.023 41.667 0.00 0.00 0.00 2.87
2819 4473 5.640147 TCCCTTTGAGAAAATGGAAGCTTA 58.360 37.500 0.00 0.00 0.00 3.09
2841 4495 4.909305 TCTTTCACGAATGCGATGTTTTTC 59.091 37.500 0.00 0.00 41.64 2.29
2877 4535 2.474816 GTCTATGCGAACCTGGTCATC 58.525 52.381 0.00 0.00 0.00 2.92
2913 4571 4.812626 CACTAGTGGTTCTAAAACAACGGT 59.187 41.667 15.49 0.00 43.09 4.83
2917 4575 5.278266 GCATGCACTAGTGGTTCTAAAACAA 60.278 40.000 23.95 0.00 37.10 2.83
2919 4577 4.379499 GGCATGCACTAGTGGTTCTAAAAC 60.379 45.833 23.95 4.83 34.46 2.43
2935 4612 2.526450 CTTCCAGAGGTCGGCATGCA 62.526 60.000 21.36 0.00 0.00 3.96
2939 4616 0.904865 ATCACTTCCAGAGGTCGGCA 60.905 55.000 0.00 0.00 0.00 5.69
2971 4654 3.054582 GGGACGGAGGGAGTAGAATTTTT 60.055 47.826 0.00 0.00 0.00 1.94
2978 4661 2.376695 TTATGGGACGGAGGGAGTAG 57.623 55.000 0.00 0.00 0.00 2.57
3021 4705 7.394923 CCCCCGTTCCATAATATAAAAGCATTA 59.605 37.037 0.00 0.00 0.00 1.90
3024 4708 5.074115 CCCCCGTTCCATAATATAAAAGCA 58.926 41.667 0.00 0.00 0.00 3.91
3025 4709 5.638596 CCCCCGTTCCATAATATAAAAGC 57.361 43.478 0.00 0.00 0.00 3.51
3045 4729 3.365472 AGTCTATGCAAATTTGGACCCC 58.635 45.455 19.47 6.38 0.00 4.95
3048 4732 6.194796 TGCTTAGTCTATGCAAATTTGGAC 57.805 37.500 19.47 16.39 36.13 4.02
3049 4733 7.259882 CAATGCTTAGTCTATGCAAATTTGGA 58.740 34.615 20.63 17.40 41.33 3.53
3102 4831 5.022021 CACGAGACTGTTCACTTTTGAAAC 58.978 41.667 0.00 0.00 43.52 2.78
3103 4832 4.436852 GCACGAGACTGTTCACTTTTGAAA 60.437 41.667 0.00 0.00 43.52 2.69
3193 4922 2.308866 ACTATTGAACCCTCAACCCTGG 59.691 50.000 0.00 0.00 44.28 4.45
3196 4925 3.713826 TGACTATTGAACCCTCAACCC 57.286 47.619 0.00 0.00 44.28 4.11
3197 4926 4.142381 GCATTGACTATTGAACCCTCAACC 60.142 45.833 0.00 0.00 44.28 3.77
3198 4927 4.702131 AGCATTGACTATTGAACCCTCAAC 59.298 41.667 0.00 0.00 44.28 3.18
3199 4928 4.701651 CAGCATTGACTATTGAACCCTCAA 59.298 41.667 0.00 0.00 45.53 3.02
3200 4929 4.264253 CAGCATTGACTATTGAACCCTCA 58.736 43.478 0.00 0.00 0.00 3.86
3219 4948 2.693074 TGGTTTGGAAGAAAAGTCCAGC 59.307 45.455 0.00 0.00 45.79 4.85
3298 5049 5.752472 ACATTTCGCATTTCAACATGTCAAA 59.248 32.000 0.00 1.83 0.00 2.69
3335 5086 4.873827 ACGCACTCTGTTTTTCAGTAAGAA 59.126 37.500 0.00 0.00 43.97 2.52
3337 5088 4.034048 ACACGCACTCTGTTTTTCAGTAAG 59.966 41.667 0.00 0.00 43.97 2.34
3338 5089 3.936453 ACACGCACTCTGTTTTTCAGTAA 59.064 39.130 0.00 0.00 43.97 2.24
3339 5090 3.308595 CACACGCACTCTGTTTTTCAGTA 59.691 43.478 0.00 0.00 43.97 2.74
3341 5092 2.351418 TCACACGCACTCTGTTTTTCAG 59.649 45.455 0.00 0.00 44.85 3.02
3342 5093 2.095213 GTCACACGCACTCTGTTTTTCA 59.905 45.455 0.00 0.00 0.00 2.69
3343 5094 2.351726 AGTCACACGCACTCTGTTTTTC 59.648 45.455 0.00 0.00 0.00 2.29
3344 5095 2.095853 CAGTCACACGCACTCTGTTTTT 59.904 45.455 0.00 0.00 0.00 1.94
3356 5107 1.330213 TGCACAATTGTCAGTCACACG 59.670 47.619 8.48 0.00 33.41 4.49
3361 5112 1.609932 CGCATGCACAATTGTCAGTC 58.390 50.000 19.57 5.48 0.00 3.51
3536 5289 2.774951 CTTGTTACCGACGAGCGCG 61.775 63.158 8.75 8.75 44.79 6.86
3896 5652 2.607635 ACGGTATGAATCATTGCACGTC 59.392 45.455 0.00 0.00 0.00 4.34
3905 5703 5.699001 GCATGGTGTAATACGGTATGAATCA 59.301 40.000 0.58 0.00 0.00 2.57
3912 5710 3.446799 GAACGCATGGTGTAATACGGTA 58.553 45.455 0.00 0.00 0.00 4.02
3930 5728 2.835027 ACTTGTTCTGTCTTCGGGAAC 58.165 47.619 0.00 0.00 39.54 3.62
3934 5732 5.047847 TGTCTAAACTTGTTCTGTCTTCGG 58.952 41.667 0.00 0.00 0.00 4.30
3939 5737 7.798982 GCTTTACATGTCTAAACTTGTTCTGTC 59.201 37.037 0.00 0.00 42.12 3.51
3943 5741 9.463443 AAATGCTTTACATGTCTAAACTTGTTC 57.537 29.630 0.00 0.00 42.12 3.18
3944 5742 9.248291 CAAATGCTTTACATGTCTAAACTTGTT 57.752 29.630 0.00 0.00 42.12 2.83
3945 5743 8.413229 ACAAATGCTTTACATGTCTAAACTTGT 58.587 29.630 0.00 3.05 43.77 3.16
3946 5744 8.801715 ACAAATGCTTTACATGTCTAAACTTG 57.198 30.769 0.00 2.41 39.60 3.16
4002 5801 5.258841 TCACAGATGAAGAGGCAAATGAAT 58.741 37.500 0.00 0.00 0.00 2.57
4064 5898 3.624777 CCTAACAAGCCCTGTGAATGAT 58.375 45.455 0.00 0.00 38.67 2.45
4070 5904 1.755179 CATCCCTAACAAGCCCTGTG 58.245 55.000 0.00 0.00 38.67 3.66
4079 5913 2.513317 TGAATCCCATGCATCCCTAACA 59.487 45.455 0.00 0.00 0.00 2.41
4141 5975 2.186076 GGATGTCGAACTTACGCTCAG 58.814 52.381 0.00 0.00 0.00 3.35
4146 5980 2.422479 TCTCTGGGATGTCGAACTTACG 59.578 50.000 0.00 0.00 0.00 3.18
4147 5981 4.451629 TTCTCTGGGATGTCGAACTTAC 57.548 45.455 0.00 0.00 0.00 2.34
4162 6004 2.593346 AGGTGCGCTAGATTTCTCTG 57.407 50.000 9.73 0.00 32.66 3.35
4185 6027 5.636123 TCCCATCTTTACTTTTTGCTGGTA 58.364 37.500 0.00 0.00 0.00 3.25
4189 6031 5.393866 TCCTTCCCATCTTTACTTTTTGCT 58.606 37.500 0.00 0.00 0.00 3.91
4192 6034 9.413734 CTCATATCCTTCCCATCTTTACTTTTT 57.586 33.333 0.00 0.00 0.00 1.94
4198 6040 9.799106 GAAAATCTCATATCCTTCCCATCTTTA 57.201 33.333 0.00 0.00 0.00 1.85
4199 6041 8.509441 AGAAAATCTCATATCCTTCCCATCTTT 58.491 33.333 0.00 0.00 0.00 2.52
4262 6104 4.613622 GCAGTTTGCGATGAGTTGTAATGT 60.614 41.667 0.00 0.00 31.71 2.71
4288 6134 5.292345 TCCGATATTGTTGTTGTTCATACGG 59.708 40.000 0.00 0.00 36.27 4.02
4311 6157 5.479306 TGACCTGTCAGTTATTAGTTGCTC 58.521 41.667 0.00 0.00 34.14 4.26
4394 6240 1.153349 GTTCCATCTGGACGGAGGC 60.153 63.158 0.00 0.00 45.39 4.70
4468 6314 9.997482 TTTAATTTAGTTGATTATGCTTCGACC 57.003 29.630 0.00 0.00 0.00 4.79
4483 6330 6.205853 TGTGAGCACCGATGTTTAATTTAGTT 59.794 34.615 0.00 0.00 0.00 2.24
4487 6334 5.009610 ACTTGTGAGCACCGATGTTTAATTT 59.990 36.000 0.00 0.00 0.00 1.82
4489 6336 4.072131 ACTTGTGAGCACCGATGTTTAAT 58.928 39.130 0.00 0.00 0.00 1.40
4515 6362 1.745653 CTCTGCGTGGACACTCATAGA 59.254 52.381 2.75 0.39 0.00 1.98
4769 6624 5.333566 TTGGAATGGAGGGAGTAGTTTTT 57.666 39.130 0.00 0.00 0.00 1.94
4770 6625 5.333566 TTTGGAATGGAGGGAGTAGTTTT 57.666 39.130 0.00 0.00 0.00 2.43
4771 6626 5.333566 TTTTGGAATGGAGGGAGTAGTTT 57.666 39.130 0.00 0.00 0.00 2.66
4772 6627 5.536497 ATTTTGGAATGGAGGGAGTAGTT 57.464 39.130 0.00 0.00 0.00 2.24
4773 6628 6.217693 ACTTATTTTGGAATGGAGGGAGTAGT 59.782 38.462 0.00 0.00 0.00 2.73
4774 6629 6.543831 CACTTATTTTGGAATGGAGGGAGTAG 59.456 42.308 0.00 0.00 0.00 2.57
4775 6630 6.011981 ACACTTATTTTGGAATGGAGGGAGTA 60.012 38.462 0.00 0.00 0.00 2.59
4776 6631 5.222337 ACACTTATTTTGGAATGGAGGGAGT 60.222 40.000 0.00 0.00 0.00 3.85
4777 6632 5.264395 ACACTTATTTTGGAATGGAGGGAG 58.736 41.667 0.00 0.00 0.00 4.30
4778 6633 5.222233 TGACACTTATTTTGGAATGGAGGGA 60.222 40.000 0.00 0.00 0.00 4.20
4779 6634 5.016173 TGACACTTATTTTGGAATGGAGGG 58.984 41.667 0.00 0.00 0.00 4.30
4780 6635 6.406177 CCATGACACTTATTTTGGAATGGAGG 60.406 42.308 0.00 0.00 34.95 4.30
4781 6636 6.153340 ACCATGACACTTATTTTGGAATGGAG 59.847 38.462 4.94 0.00 35.84 3.86
4782 6637 6.015918 ACCATGACACTTATTTTGGAATGGA 58.984 36.000 4.94 0.00 35.84 3.41
4783 6638 6.284891 ACCATGACACTTATTTTGGAATGG 57.715 37.500 0.00 0.00 37.21 3.16
4784 6639 8.606040 AAAACCATGACACTTATTTTGGAATG 57.394 30.769 0.00 0.00 0.00 2.67
4785 6640 9.927668 CTAAAACCATGACACTTATTTTGGAAT 57.072 29.630 0.00 0.00 0.00 3.01
4786 6641 8.919145 ACTAAAACCATGACACTTATTTTGGAA 58.081 29.630 0.00 0.00 0.00 3.53
4787 6642 8.472007 ACTAAAACCATGACACTTATTTTGGA 57.528 30.769 0.00 0.00 0.00 3.53
4788 6643 9.191995 GAACTAAAACCATGACACTTATTTTGG 57.808 33.333 0.00 0.00 0.00 3.28
4789 6644 9.743057 TGAACTAAAACCATGACACTTATTTTG 57.257 29.630 0.00 0.00 0.00 2.44
4793 6648 9.912634 CAATTGAACTAAAACCATGACACTTAT 57.087 29.630 0.00 0.00 0.00 1.73
4794 6649 8.356657 CCAATTGAACTAAAACCATGACACTTA 58.643 33.333 7.12 0.00 0.00 2.24
4795 6650 7.069331 TCCAATTGAACTAAAACCATGACACTT 59.931 33.333 7.12 0.00 0.00 3.16
4796 6651 6.549364 TCCAATTGAACTAAAACCATGACACT 59.451 34.615 7.12 0.00 0.00 3.55
4797 6652 6.744112 TCCAATTGAACTAAAACCATGACAC 58.256 36.000 7.12 0.00 0.00 3.67
4798 6653 6.968263 TCCAATTGAACTAAAACCATGACA 57.032 33.333 7.12 0.00 0.00 3.58
4812 6667 1.702957 ACTCCCTCCGTTCCAATTGAA 59.297 47.619 7.12 0.00 0.00 2.69
4813 6668 1.358152 ACTCCCTCCGTTCCAATTGA 58.642 50.000 7.12 0.00 0.00 2.57
4814 6669 3.343941 TTACTCCCTCCGTTCCAATTG 57.656 47.619 0.00 0.00 0.00 2.32
4815 6670 5.607171 AGATATTACTCCCTCCGTTCCAATT 59.393 40.000 0.00 0.00 0.00 2.32
4816 6671 5.155905 AGATATTACTCCCTCCGTTCCAAT 58.844 41.667 0.00 0.00 0.00 3.16
4817 6672 4.553678 AGATATTACTCCCTCCGTTCCAA 58.446 43.478 0.00 0.00 0.00 3.53
4818 6673 4.194678 AGATATTACTCCCTCCGTTCCA 57.805 45.455 0.00 0.00 0.00 3.53
4819 6674 6.661304 TTTAGATATTACTCCCTCCGTTCC 57.339 41.667 0.00 0.00 0.00 3.62
4820 6675 8.124808 AGATTTAGATATTACTCCCTCCGTTC 57.875 38.462 0.00 0.00 0.00 3.95
4821 6676 7.728981 TGAGATTTAGATATTACTCCCTCCGTT 59.271 37.037 0.00 0.00 0.00 4.44
4822 6677 7.239438 TGAGATTTAGATATTACTCCCTCCGT 58.761 38.462 0.00 0.00 0.00 4.69
4823 6678 7.704578 TGAGATTTAGATATTACTCCCTCCG 57.295 40.000 0.00 0.00 0.00 4.63
4824 6679 9.883142 CATTGAGATTTAGATATTACTCCCTCC 57.117 37.037 0.00 0.00 0.00 4.30
4825 6680 9.883142 CCATTGAGATTTAGATATTACTCCCTC 57.117 37.037 0.00 0.00 0.00 4.30
4826 6681 9.398921 ACCATTGAGATTTAGATATTACTCCCT 57.601 33.333 0.00 0.00 0.00 4.20
4827 6682 9.660180 GACCATTGAGATTTAGATATTACTCCC 57.340 37.037 0.00 0.00 0.00 4.30
4834 6689 9.685276 TGTGTTTGACCATTGAGATTTAGATAT 57.315 29.630 0.00 0.00 0.00 1.63
4835 6690 9.685276 ATGTGTTTGACCATTGAGATTTAGATA 57.315 29.630 0.00 0.00 0.00 1.98
4836 6691 8.585471 ATGTGTTTGACCATTGAGATTTAGAT 57.415 30.769 0.00 0.00 0.00 1.98
4837 6692 7.665145 TGATGTGTTTGACCATTGAGATTTAGA 59.335 33.333 0.00 0.00 0.00 2.10
4838 6693 7.819644 TGATGTGTTTGACCATTGAGATTTAG 58.180 34.615 0.00 0.00 0.00 1.85
4839 6694 7.757941 TGATGTGTTTGACCATTGAGATTTA 57.242 32.000 0.00 0.00 0.00 1.40
4840 6695 6.653526 TGATGTGTTTGACCATTGAGATTT 57.346 33.333 0.00 0.00 0.00 2.17
4841 6696 6.491062 TCTTGATGTGTTTGACCATTGAGATT 59.509 34.615 0.00 0.00 0.00 2.40
4842 6697 6.005823 TCTTGATGTGTTTGACCATTGAGAT 58.994 36.000 0.00 0.00 0.00 2.75
4843 6698 5.375773 TCTTGATGTGTTTGACCATTGAGA 58.624 37.500 0.00 0.00 0.00 3.27
4844 6699 5.694231 TCTTGATGTGTTTGACCATTGAG 57.306 39.130 0.00 0.00 0.00 3.02
4845 6700 6.462552 TTTCTTGATGTGTTTGACCATTGA 57.537 33.333 0.00 0.00 0.00 2.57
4846 6701 6.924612 TCATTTCTTGATGTGTTTGACCATTG 59.075 34.615 0.00 0.00 0.00 2.82
4847 6702 7.014518 TCTCATTTCTTGATGTGTTTGACCATT 59.985 33.333 0.00 0.00 32.72 3.16
4848 6703 6.491062 TCTCATTTCTTGATGTGTTTGACCAT 59.509 34.615 0.00 0.00 32.72 3.55
4849 6704 5.827267 TCTCATTTCTTGATGTGTTTGACCA 59.173 36.000 0.00 0.00 32.72 4.02
4850 6705 6.317789 TCTCATTTCTTGATGTGTTTGACC 57.682 37.500 0.00 0.00 32.72 4.02
4851 6706 5.855395 GCTCTCATTTCTTGATGTGTTTGAC 59.145 40.000 0.00 0.00 32.72 3.18
4852 6707 6.005583 GCTCTCATTTCTTGATGTGTTTGA 57.994 37.500 0.00 0.00 32.72 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.