Multiple sequence alignment - TraesCS5A01G315000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G315000 chr5A 100.000 4219 0 0 1 4219 525598564 525602782 0.000000e+00 7792
1 TraesCS5A01G315000 chr5A 100.000 530 0 0 4585 5114 525603148 525603677 0.000000e+00 979
2 TraesCS5A01G315000 chr5A 95.857 531 21 1 4585 5114 525613236 525613766 0.000000e+00 857
3 TraesCS5A01G315000 chr5A 82.353 340 47 9 2461 2799 526264932 526265259 3.010000e-72 283
4 TraesCS5A01G315000 chr5A 82.353 340 40 13 2461 2799 525724303 525724623 1.400000e-70 278
5 TraesCS5A01G315000 chr5A 82.282 333 39 13 2469 2799 525829744 525830058 2.350000e-68 270
6 TraesCS5A01G315000 chr5A 82.229 332 38 14 2469 2799 525918369 525918680 3.040000e-67 267
7 TraesCS5A01G315000 chr5A 89.730 185 14 3 737 916 458197285 458197101 1.110000e-56 231
8 TraesCS5A01G315000 chr5D 92.527 2275 117 27 924 3167 413283707 413285959 0.000000e+00 3210
9 TraesCS5A01G315000 chr5D 95.342 730 32 1 3473 4200 413286413 413287142 0.000000e+00 1158
10 TraesCS5A01G315000 chr5D 91.026 624 40 7 109 728 413283092 413283703 0.000000e+00 828
11 TraesCS5A01G315000 chr5D 93.003 343 18 3 3147 3488 413286058 413286395 3.560000e-136 496
12 TraesCS5A01G315000 chr5D 89.785 186 13 6 735 916 544792971 544792788 3.080000e-57 233
13 TraesCS5A01G315000 chr5D 89.617 183 14 5 737 914 381562002 381562184 1.430000e-55 228
14 TraesCS5A01G315000 chr5D 97.321 112 3 0 1 112 202454633 202454744 1.880000e-44 191
15 TraesCS5A01G315000 chr5B 91.892 1776 99 27 2449 4200 498082188 498083942 0.000000e+00 2440
16 TraesCS5A01G315000 chr5B 94.566 1049 52 3 923 1967 498080333 498081380 0.000000e+00 1616
17 TraesCS5A01G315000 chr5B 90.837 633 32 12 116 733 498079714 498080335 0.000000e+00 824
18 TraesCS5A01G315000 chr5B 82.647 340 46 8 2461 2799 498511416 498511743 6.480000e-74 289
19 TraesCS5A01G315000 chr5B 89.928 139 12 2 2461 2599 498722607 498722743 1.460000e-40 178
20 TraesCS5A01G315000 chr5B 91.150 113 7 3 1975 2084 498082012 498082124 3.190000e-32 150
21 TraesCS5A01G315000 chr5B 91.860 86 6 1 2807 2892 560436860 560436776 8.990000e-23 119
22 TraesCS5A01G315000 chr4D 88.582 832 78 10 1114 1935 499734664 499733840 0.000000e+00 994
23 TraesCS5A01G315000 chr4D 97.321 112 3 0 1 112 67477615 67477726 1.880000e-44 191
24 TraesCS5A01G315000 chr4D 97.321 112 3 0 1 112 313084788 313084899 1.880000e-44 191
25 TraesCS5A01G315000 chr4D 97.321 112 3 0 1 112 372638755 372638644 1.880000e-44 191
26 TraesCS5A01G315000 chr4B 88.779 811 80 5 1135 1935 642925107 642924298 0.000000e+00 983
27 TraesCS5A01G315000 chr4B 82.878 549 93 1 3534 4081 642923559 642923011 4.600000e-135 492
28 TraesCS5A01G315000 chrUn 88.265 784 89 3 1159 1939 36612500 36613283 0.000000e+00 935
29 TraesCS5A01G315000 chrUn 88.265 784 89 3 1159 1939 301214987 301215770 0.000000e+00 935
30 TraesCS5A01G315000 chrUn 96.045 531 18 3 4585 5114 177496350 177496878 0.000000e+00 861
31 TraesCS5A01G315000 chr3B 85.971 834 107 6 1114 1942 14370481 14369653 0.000000e+00 883
32 TraesCS5A01G315000 chr3B 86.650 794 85 10 1150 1939 26770017 26770793 0.000000e+00 859
33 TraesCS5A01G315000 chr3B 92.941 85 4 2 2808 2892 433271463 433271381 6.950000e-24 122
34 TraesCS5A01G315000 chr6A 96.226 530 18 2 4585 5113 423286752 423286224 0.000000e+00 867
35 TraesCS5A01G315000 chr6A 95.660 530 19 4 4585 5113 278506529 278507055 0.000000e+00 848
36 TraesCS5A01G315000 chr6A 95.480 531 21 3 4585 5114 396422623 396422095 0.000000e+00 845
37 TraesCS5A01G315000 chr6A 95.292 531 22 3 4585 5114 396410993 396410465 0.000000e+00 839
38 TraesCS5A01G315000 chr6A 87.500 200 20 5 734 928 135268349 135268150 5.150000e-55 226
39 TraesCS5A01G315000 chr7A 96.038 530 17 4 4585 5113 485465339 485465865 0.000000e+00 859
40 TraesCS5A01G315000 chr7A 96.000 525 18 3 4585 5108 160200660 160201182 0.000000e+00 850
41 TraesCS5A01G315000 chr7A 88.000 200 17 7 742 934 121929848 121929649 3.980000e-56 230
42 TraesCS5A01G315000 chr1A 95.857 531 20 2 4585 5114 225014828 225015357 0.000000e+00 857
43 TraesCS5A01G315000 chr1A 90.625 192 13 5 730 916 521852931 521853122 3.060000e-62 250
44 TraesCS5A01G315000 chr1A 97.321 112 3 0 1 112 524291608 524291497 1.880000e-44 191
45 TraesCS5A01G315000 chr1A 88.462 104 11 1 2789 2892 259204113 259204011 1.930000e-24 124
46 TraesCS5A01G315000 chr3A 86.575 730 91 5 1213 1937 16810285 16811012 0.000000e+00 798
47 TraesCS5A01G315000 chr3A 86.575 730 91 5 1213 1937 16858971 16859698 0.000000e+00 798
48 TraesCS5A01G315000 chr3A 89.674 184 14 5 738 916 703893225 703893408 3.980000e-56 230
49 TraesCS5A01G315000 chr3A 88.542 192 16 6 726 912 36477571 36477761 1.430000e-55 228
50 TraesCS5A01G315000 chr3A 88.660 97 10 1 2796 2892 12747905 12748000 3.240000e-22 117
51 TraesCS5A01G315000 chr4A 87.000 200 21 3 735 929 93977291 93977092 2.400000e-53 220
52 TraesCS5A01G315000 chr7D 97.321 112 3 0 1 112 29365988 29365877 1.880000e-44 191
53 TraesCS5A01G315000 chr7D 97.321 112 3 0 1 112 600082324 600082213 1.880000e-44 191
54 TraesCS5A01G315000 chr6D 97.321 112 3 0 1 112 364552454 364552343 1.880000e-44 191
55 TraesCS5A01G315000 chr6D 85.870 184 15 9 2192 2365 372814073 372813891 8.740000e-43 185
56 TraesCS5A01G315000 chr3D 97.321 112 3 0 1 112 81432496 81432607 1.880000e-44 191
57 TraesCS5A01G315000 chr2B 85.484 186 18 7 2191 2367 60121710 60121525 8.740000e-43 185
58 TraesCS5A01G315000 chr7B 89.583 96 9 1 2797 2892 533773484 533773390 2.500000e-23 121
59 TraesCS5A01G315000 chr7B 88.542 96 10 1 2797 2892 705195649 705195555 1.160000e-21 115
60 TraesCS5A01G315000 chr6B 87.629 97 11 1 2796 2892 60105540 60105445 1.510000e-20 111
61 TraesCS5A01G315000 chr1B 78.075 187 27 12 2192 2365 642492554 642492369 7.000000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G315000 chr5A 525598564 525603677 5113 False 4385.5 7792 100.00000 1 5114 2 chr5A.!!$F6 5113
1 TraesCS5A01G315000 chr5A 525613236 525613766 530 False 857.0 857 95.85700 4585 5114 1 chr5A.!!$F1 529
2 TraesCS5A01G315000 chr5D 413283092 413287142 4050 False 1423.0 3210 92.97450 109 4200 4 chr5D.!!$F3 4091
3 TraesCS5A01G315000 chr5B 498079714 498083942 4228 False 1257.5 2440 92.11125 116 4200 4 chr5B.!!$F3 4084
4 TraesCS5A01G315000 chr4D 499733840 499734664 824 True 994.0 994 88.58200 1114 1935 1 chr4D.!!$R2 821
5 TraesCS5A01G315000 chr4B 642923011 642925107 2096 True 737.5 983 85.82850 1135 4081 2 chr4B.!!$R1 2946
6 TraesCS5A01G315000 chrUn 36612500 36613283 783 False 935.0 935 88.26500 1159 1939 1 chrUn.!!$F1 780
7 TraesCS5A01G315000 chrUn 301214987 301215770 783 False 935.0 935 88.26500 1159 1939 1 chrUn.!!$F3 780
8 TraesCS5A01G315000 chrUn 177496350 177496878 528 False 861.0 861 96.04500 4585 5114 1 chrUn.!!$F2 529
9 TraesCS5A01G315000 chr3B 14369653 14370481 828 True 883.0 883 85.97100 1114 1942 1 chr3B.!!$R1 828
10 TraesCS5A01G315000 chr3B 26770017 26770793 776 False 859.0 859 86.65000 1150 1939 1 chr3B.!!$F1 789
11 TraesCS5A01G315000 chr6A 423286224 423286752 528 True 867.0 867 96.22600 4585 5113 1 chr6A.!!$R4 528
12 TraesCS5A01G315000 chr6A 278506529 278507055 526 False 848.0 848 95.66000 4585 5113 1 chr6A.!!$F1 528
13 TraesCS5A01G315000 chr6A 396422095 396422623 528 True 845.0 845 95.48000 4585 5114 1 chr6A.!!$R3 529
14 TraesCS5A01G315000 chr6A 396410465 396410993 528 True 839.0 839 95.29200 4585 5114 1 chr6A.!!$R2 529
15 TraesCS5A01G315000 chr7A 485465339 485465865 526 False 859.0 859 96.03800 4585 5113 1 chr7A.!!$F2 528
16 TraesCS5A01G315000 chr7A 160200660 160201182 522 False 850.0 850 96.00000 4585 5108 1 chr7A.!!$F1 523
17 TraesCS5A01G315000 chr1A 225014828 225015357 529 False 857.0 857 95.85700 4585 5114 1 chr1A.!!$F1 529
18 TraesCS5A01G315000 chr3A 16810285 16811012 727 False 798.0 798 86.57500 1213 1937 1 chr3A.!!$F2 724
19 TraesCS5A01G315000 chr3A 16858971 16859698 727 False 798.0 798 86.57500 1213 1937 1 chr3A.!!$F3 724

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
60 61 0.039437 TGCAGAGTCGTTTCGGTCTC 60.039 55.0 0.00 0.0 0.00 3.36 F
317 319 0.110295 TTGGCTGGCTACTTGCTGAA 59.890 50.0 2.00 0.0 42.39 3.02 F
1584 1611 0.036164 ACGTTGGCCTGAGCATTGTA 59.964 50.0 3.32 0.0 42.56 2.41 F
2330 3034 0.322277 AGATTGTGTGCCTCCTGCTG 60.322 55.0 0.00 0.0 42.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1535 1562 0.460987 GGAGAGGAACAGCGTCATGG 60.461 60.000 0.0 0.0 33.89 3.66 R
2108 2809 0.710017 CGGCGGTAACTGACGTTAAC 59.290 55.000 0.0 0.0 39.42 2.01 R
3047 3824 0.752054 CTTTGCCTTCTTTGCACCCA 59.248 50.000 0.0 0.0 38.72 4.51 R
4160 5138 1.134551 GGAGAGAGACATGCCACTTCC 60.135 57.143 0.0 0.0 0.00 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.803426 GCAGGCAGGAGTCGGTCG 62.803 72.222 0.00 0.00 0.00 4.79
18 19 3.062466 CAGGCAGGAGTCGGTCGA 61.062 66.667 0.00 0.00 0.00 4.20
19 20 2.043852 AGGCAGGAGTCGGTCGAT 60.044 61.111 0.00 0.00 0.00 3.59
20 21 2.105128 GGCAGGAGTCGGTCGATG 59.895 66.667 0.00 0.00 0.00 3.84
21 22 2.711922 GGCAGGAGTCGGTCGATGT 61.712 63.158 0.00 0.00 0.00 3.06
22 23 1.517257 GCAGGAGTCGGTCGATGTG 60.517 63.158 0.00 0.00 0.00 3.21
23 24 1.883732 CAGGAGTCGGTCGATGTGT 59.116 57.895 0.00 0.00 0.00 3.72
24 25 0.456824 CAGGAGTCGGTCGATGTGTG 60.457 60.000 0.00 0.00 0.00 3.82
25 26 1.153823 GGAGTCGGTCGATGTGTGG 60.154 63.158 0.00 0.00 0.00 4.17
26 27 1.592400 GGAGTCGGTCGATGTGTGGA 61.592 60.000 0.00 0.00 0.00 4.02
27 28 0.179161 GAGTCGGTCGATGTGTGGAG 60.179 60.000 0.00 0.00 0.00 3.86
28 29 0.894184 AGTCGGTCGATGTGTGGAGT 60.894 55.000 0.00 0.00 0.00 3.85
29 30 0.806868 GTCGGTCGATGTGTGGAGTA 59.193 55.000 0.00 0.00 0.00 2.59
30 31 1.200716 GTCGGTCGATGTGTGGAGTAA 59.799 52.381 0.00 0.00 0.00 2.24
31 32 2.097036 TCGGTCGATGTGTGGAGTAAT 58.903 47.619 0.00 0.00 0.00 1.89
32 33 3.065786 GTCGGTCGATGTGTGGAGTAATA 59.934 47.826 0.00 0.00 0.00 0.98
33 34 3.314357 TCGGTCGATGTGTGGAGTAATAG 59.686 47.826 0.00 0.00 0.00 1.73
34 35 3.066342 CGGTCGATGTGTGGAGTAATAGT 59.934 47.826 0.00 0.00 0.00 2.12
35 36 4.274214 CGGTCGATGTGTGGAGTAATAGTA 59.726 45.833 0.00 0.00 0.00 1.82
36 37 5.560375 CGGTCGATGTGTGGAGTAATAGTAG 60.560 48.000 0.00 0.00 0.00 2.57
37 38 5.298777 GGTCGATGTGTGGAGTAATAGTAGT 59.701 44.000 0.00 0.00 0.00 2.73
38 39 6.484643 GGTCGATGTGTGGAGTAATAGTAGTA 59.515 42.308 0.00 0.00 0.00 1.82
39 40 7.307870 GGTCGATGTGTGGAGTAATAGTAGTAG 60.308 44.444 0.00 0.00 0.00 2.57
40 41 7.440556 GTCGATGTGTGGAGTAATAGTAGTAGA 59.559 40.741 0.00 0.00 0.00 2.59
41 42 8.155510 TCGATGTGTGGAGTAATAGTAGTAGAT 58.844 37.037 0.00 0.00 0.00 1.98
42 43 8.231161 CGATGTGTGGAGTAATAGTAGTAGATG 58.769 40.741 0.00 0.00 0.00 2.90
43 44 7.273320 TGTGTGGAGTAATAGTAGTAGATGC 57.727 40.000 0.00 0.00 0.00 3.91
44 45 6.831868 TGTGTGGAGTAATAGTAGTAGATGCA 59.168 38.462 0.00 0.00 0.00 3.96
45 46 7.013369 TGTGTGGAGTAATAGTAGTAGATGCAG 59.987 40.741 0.00 0.00 0.00 4.41
46 47 7.228906 GTGTGGAGTAATAGTAGTAGATGCAGA 59.771 40.741 0.00 0.00 0.00 4.26
47 48 7.445707 TGTGGAGTAATAGTAGTAGATGCAGAG 59.554 40.741 0.00 0.00 0.00 3.35
48 49 7.446013 GTGGAGTAATAGTAGTAGATGCAGAGT 59.554 40.741 0.00 0.00 0.00 3.24
49 50 7.662258 TGGAGTAATAGTAGTAGATGCAGAGTC 59.338 40.741 0.00 0.00 0.00 3.36
50 51 7.148540 GGAGTAATAGTAGTAGATGCAGAGTCG 60.149 44.444 0.00 0.00 0.00 4.18
51 52 7.218614 AGTAATAGTAGTAGATGCAGAGTCGT 58.781 38.462 0.00 0.00 0.00 4.34
52 53 6.945938 AATAGTAGTAGATGCAGAGTCGTT 57.054 37.500 0.00 0.00 0.00 3.85
53 54 6.945938 ATAGTAGTAGATGCAGAGTCGTTT 57.054 37.500 0.00 0.00 0.00 3.60
54 55 5.238006 AGTAGTAGATGCAGAGTCGTTTC 57.762 43.478 0.00 0.00 0.00 2.78
55 56 3.138205 AGTAGATGCAGAGTCGTTTCG 57.862 47.619 0.00 0.00 0.00 3.46
56 57 2.159366 AGTAGATGCAGAGTCGTTTCGG 60.159 50.000 0.00 0.00 0.00 4.30
57 58 0.603569 AGATGCAGAGTCGTTTCGGT 59.396 50.000 0.00 0.00 0.00 4.69
58 59 0.992802 GATGCAGAGTCGTTTCGGTC 59.007 55.000 0.00 0.00 0.00 4.79
59 60 0.603569 ATGCAGAGTCGTTTCGGTCT 59.396 50.000 0.00 0.00 0.00 3.85
60 61 0.039437 TGCAGAGTCGTTTCGGTCTC 60.039 55.000 0.00 0.00 0.00 3.36
61 62 0.733223 GCAGAGTCGTTTCGGTCTCC 60.733 60.000 9.77 0.00 32.50 3.71
62 63 0.882474 CAGAGTCGTTTCGGTCTCCT 59.118 55.000 9.77 0.00 32.50 3.69
63 64 1.269998 CAGAGTCGTTTCGGTCTCCTT 59.730 52.381 9.77 0.00 32.50 3.36
64 65 1.269998 AGAGTCGTTTCGGTCTCCTTG 59.730 52.381 9.77 0.00 32.50 3.61
65 66 1.268899 GAGTCGTTTCGGTCTCCTTGA 59.731 52.381 0.00 0.00 0.00 3.02
66 67 1.000496 AGTCGTTTCGGTCTCCTTGAC 60.000 52.381 0.00 0.00 44.63 3.18
73 74 4.554163 GTCTCCTTGACACGGACG 57.446 61.111 0.00 0.00 44.73 4.79
74 75 1.658673 GTCTCCTTGACACGGACGT 59.341 57.895 0.00 0.00 44.73 4.34
75 76 0.877071 GTCTCCTTGACACGGACGTA 59.123 55.000 0.00 0.00 44.73 3.57
76 77 1.267806 GTCTCCTTGACACGGACGTAA 59.732 52.381 0.00 0.00 44.73 3.18
77 78 2.094854 GTCTCCTTGACACGGACGTAAT 60.095 50.000 0.00 0.00 44.73 1.89
78 79 2.094906 TCTCCTTGACACGGACGTAATG 60.095 50.000 0.00 0.00 0.00 1.90
79 80 0.719465 CCTTGACACGGACGTAATGC 59.281 55.000 0.00 0.00 0.00 3.56
80 81 0.719465 CTTGACACGGACGTAATGCC 59.281 55.000 0.00 0.00 0.00 4.40
81 82 0.319083 TTGACACGGACGTAATGCCT 59.681 50.000 0.00 0.00 0.00 4.75
82 83 1.175654 TGACACGGACGTAATGCCTA 58.824 50.000 0.00 0.00 0.00 3.93
83 84 1.752498 TGACACGGACGTAATGCCTAT 59.248 47.619 0.00 0.00 0.00 2.57
84 85 2.950975 TGACACGGACGTAATGCCTATA 59.049 45.455 0.00 0.00 0.00 1.31
85 86 3.570975 TGACACGGACGTAATGCCTATAT 59.429 43.478 0.00 0.00 0.00 0.86
86 87 4.038282 TGACACGGACGTAATGCCTATATT 59.962 41.667 0.00 0.00 0.00 1.28
87 88 4.553323 ACACGGACGTAATGCCTATATTC 58.447 43.478 0.00 0.00 0.00 1.75
88 89 4.038282 ACACGGACGTAATGCCTATATTCA 59.962 41.667 0.00 0.00 0.00 2.57
89 90 5.168569 CACGGACGTAATGCCTATATTCAT 58.831 41.667 0.00 0.00 0.00 2.57
90 91 5.062183 CACGGACGTAATGCCTATATTCATG 59.938 44.000 0.00 0.00 0.00 3.07
91 92 5.047590 ACGGACGTAATGCCTATATTCATGA 60.048 40.000 0.00 0.00 0.00 3.07
92 93 6.042777 CGGACGTAATGCCTATATTCATGAT 58.957 40.000 0.00 0.00 0.00 2.45
93 94 6.199154 CGGACGTAATGCCTATATTCATGATC 59.801 42.308 0.00 0.00 0.00 2.92
94 95 7.041721 GGACGTAATGCCTATATTCATGATCA 58.958 38.462 0.00 0.00 0.00 2.92
95 96 7.712639 GGACGTAATGCCTATATTCATGATCAT 59.287 37.037 1.18 1.18 0.00 2.45
96 97 9.102757 GACGTAATGCCTATATTCATGATCATT 57.897 33.333 5.16 0.00 0.00 2.57
97 98 8.886719 ACGTAATGCCTATATTCATGATCATTG 58.113 33.333 5.16 2.19 0.00 2.82
98 99 7.854422 CGTAATGCCTATATTCATGATCATTGC 59.146 37.037 5.16 1.04 0.00 3.56
99 100 6.710597 ATGCCTATATTCATGATCATTGCC 57.289 37.500 5.16 0.00 0.00 4.52
100 101 5.823312 TGCCTATATTCATGATCATTGCCT 58.177 37.500 5.16 0.00 0.00 4.75
101 102 6.250711 TGCCTATATTCATGATCATTGCCTT 58.749 36.000 5.16 0.00 0.00 4.35
102 103 7.404481 TGCCTATATTCATGATCATTGCCTTA 58.596 34.615 5.16 0.00 0.00 2.69
103 104 7.555195 TGCCTATATTCATGATCATTGCCTTAG 59.445 37.037 5.16 5.31 0.00 2.18
104 105 7.772292 GCCTATATTCATGATCATTGCCTTAGA 59.228 37.037 5.16 0.00 0.00 2.10
105 106 9.848710 CCTATATTCATGATCATTGCCTTAGAT 57.151 33.333 5.16 0.00 0.00 1.98
109 110 7.838771 TTCATGATCATTGCCTTAGATATCG 57.161 36.000 5.16 0.00 0.00 2.92
110 111 6.939622 TCATGATCATTGCCTTAGATATCGT 58.060 36.000 5.16 0.00 0.00 3.73
111 112 7.038048 TCATGATCATTGCCTTAGATATCGTC 58.962 38.462 5.16 0.00 0.00 4.20
112 113 5.724328 TGATCATTGCCTTAGATATCGTCC 58.276 41.667 0.00 0.00 0.00 4.79
113 114 4.174411 TCATTGCCTTAGATATCGTCCG 57.826 45.455 0.00 0.00 0.00 4.79
199 200 6.273071 TCATTGACGATCTTGACGAATACAT 58.727 36.000 0.00 0.00 34.70 2.29
218 219 4.794334 ACATCACTCTAATACGACCTCCT 58.206 43.478 0.00 0.00 0.00 3.69
306 308 1.396653 AGCATGATTAGTTGGCTGGC 58.603 50.000 0.00 0.00 32.76 4.85
307 309 1.064166 AGCATGATTAGTTGGCTGGCT 60.064 47.619 0.00 0.00 32.76 4.75
308 310 2.173356 AGCATGATTAGTTGGCTGGCTA 59.827 45.455 0.00 0.00 32.76 3.93
309 311 2.291741 GCATGATTAGTTGGCTGGCTAC 59.708 50.000 7.67 7.67 0.00 3.58
317 319 0.110295 TTGGCTGGCTACTTGCTGAA 59.890 50.000 2.00 0.00 42.39 3.02
338 342 7.113965 GCTGAATGTCAAACAAGATTAGTTGTG 59.886 37.037 0.00 0.00 39.82 3.33
409 414 7.001674 AGTGTGTTTATATGTGTGGAGGAAAA 58.998 34.615 0.00 0.00 0.00 2.29
429 434 8.170730 AGGAAAAGAATGGATTTAACTACCACT 58.829 33.333 0.00 0.00 36.49 4.00
433 438 2.980568 TGGATTTAACTACCACTGCCG 58.019 47.619 0.00 0.00 0.00 5.69
454 459 3.614176 CGACATGTTCATCTTGTGACGAT 59.386 43.478 0.00 0.00 36.32 3.73
547 552 6.059484 AGTAGTTAGCTAAAGCAACCAAACA 58.941 36.000 7.99 0.00 45.16 2.83
582 588 1.133025 CAATCGGACAAAGGTGATGGC 59.867 52.381 0.00 0.00 0.00 4.40
679 687 4.696899 GGACTTACCCAATTAGCACAAC 57.303 45.455 0.00 0.00 0.00 3.32
680 688 3.442625 GGACTTACCCAATTAGCACAACC 59.557 47.826 0.00 0.00 0.00 3.77
693 701 2.624838 AGCACAACCTGACCAAAATGAG 59.375 45.455 0.00 0.00 0.00 2.90
714 730 0.466372 GCATACCCTTTCTGGCTCCC 60.466 60.000 0.00 0.00 0.00 4.30
722 738 1.002544 CTTTCTGGCTCCCTCTTTCGT 59.997 52.381 0.00 0.00 0.00 3.85
728 744 1.002087 GGCTCCCTCTTTCGTCTCAAA 59.998 52.381 0.00 0.00 0.00 2.69
733 749 5.411669 GCTCCCTCTTTCGTCTCAAATTTAA 59.588 40.000 0.00 0.00 0.00 1.52
734 750 6.094186 GCTCCCTCTTTCGTCTCAAATTTAAT 59.906 38.462 0.00 0.00 0.00 1.40
735 751 7.362142 GCTCCCTCTTTCGTCTCAAATTTAATT 60.362 37.037 0.00 0.00 0.00 1.40
736 752 9.162764 CTCCCTCTTTCGTCTCAAATTTAATTA 57.837 33.333 0.00 0.00 0.00 1.40
737 753 9.681062 TCCCTCTTTCGTCTCAAATTTAATTAT 57.319 29.630 0.00 0.00 0.00 1.28
738 754 9.937175 CCCTCTTTCGTCTCAAATTTAATTATC 57.063 33.333 0.00 0.00 0.00 1.75
761 777 8.621532 ATCAGTTTTGTTAAAGCACATCTAGA 57.378 30.769 0.00 0.00 0.00 2.43
762 778 8.621532 TCAGTTTTGTTAAAGCACATCTAGAT 57.378 30.769 0.00 0.00 0.00 1.98
763 779 8.506437 TCAGTTTTGTTAAAGCACATCTAGATG 58.494 33.333 27.63 27.63 44.15 2.90
779 795 8.992835 CATCTAGATGTGCTATAAGTATTGCA 57.007 34.615 22.42 3.73 40.96 4.08
797 813 9.836864 AGTATTGCACATCTAAATTCTATGTCA 57.163 29.630 0.00 0.00 31.60 3.58
801 817 8.735692 TGCACATCTAAATTCTATGTCATTCA 57.264 30.769 0.00 0.00 31.60 2.57
802 818 9.346005 TGCACATCTAAATTCTATGTCATTCAT 57.654 29.630 0.00 0.00 40.25 2.57
803 819 9.823098 GCACATCTAAATTCTATGTCATTCATC 57.177 33.333 0.00 0.00 37.91 2.92
818 834 8.134905 TGTCATTCATCTTATGTTGAGATTCG 57.865 34.615 0.00 0.00 31.66 3.34
819 835 7.765819 TGTCATTCATCTTATGTTGAGATTCGT 59.234 33.333 0.00 0.00 31.66 3.85
820 836 8.060679 GTCATTCATCTTATGTTGAGATTCGTG 58.939 37.037 0.00 0.00 31.66 4.35
821 837 7.765819 TCATTCATCTTATGTTGAGATTCGTGT 59.234 33.333 0.00 0.00 31.66 4.49
822 838 9.034544 CATTCATCTTATGTTGAGATTCGTGTA 57.965 33.333 0.00 0.00 31.66 2.90
823 839 8.634475 TTCATCTTATGTTGAGATTCGTGTAG 57.366 34.615 0.00 0.00 31.66 2.74
824 840 7.996385 TCATCTTATGTTGAGATTCGTGTAGA 58.004 34.615 0.00 0.00 31.66 2.59
825 841 8.633561 TCATCTTATGTTGAGATTCGTGTAGAT 58.366 33.333 0.00 0.00 31.66 1.98
826 842 9.899226 CATCTTATGTTGAGATTCGTGTAGATA 57.101 33.333 0.00 0.00 31.66 1.98
884 900 9.896645 ATTCACTCATTTAGATGTGTCATAACT 57.103 29.630 0.00 0.00 37.77 2.24
890 906 9.665719 TCATTTAGATGTGTCATAACTAAAGCA 57.334 29.630 14.40 4.55 36.79 3.91
910 926 5.004922 GCATATCTAGATGTGCCCTAGAC 57.995 47.826 32.93 12.44 46.14 2.59
911 927 4.464244 GCATATCTAGATGTGCCCTAGACA 59.536 45.833 32.93 4.75 46.14 3.41
912 928 5.623368 GCATATCTAGATGTGCCCTAGACAC 60.623 48.000 32.93 11.25 46.14 3.67
916 932 3.056458 TGTGCCCTAGACACACCG 58.944 61.111 12.81 0.00 42.88 4.94
917 933 1.532078 TGTGCCCTAGACACACCGA 60.532 57.895 12.81 0.00 42.88 4.69
918 934 0.902984 TGTGCCCTAGACACACCGAT 60.903 55.000 12.81 0.00 42.88 4.18
919 935 0.249398 GTGCCCTAGACACACCGATT 59.751 55.000 10.07 0.00 37.96 3.34
920 936 1.479323 GTGCCCTAGACACACCGATTA 59.521 52.381 10.07 0.00 37.96 1.75
921 937 2.093869 GTGCCCTAGACACACCGATTAA 60.094 50.000 10.07 0.00 37.96 1.40
922 938 2.769663 TGCCCTAGACACACCGATTAAT 59.230 45.455 0.00 0.00 0.00 1.40
923 939 3.199071 TGCCCTAGACACACCGATTAATT 59.801 43.478 0.00 0.00 0.00 1.40
924 940 4.406326 TGCCCTAGACACACCGATTAATTA 59.594 41.667 0.00 0.00 0.00 1.40
925 941 5.071250 TGCCCTAGACACACCGATTAATTAT 59.929 40.000 0.00 0.00 0.00 1.28
926 942 6.268158 TGCCCTAGACACACCGATTAATTATA 59.732 38.462 0.00 0.00 0.00 0.98
927 943 7.038587 TGCCCTAGACACACCGATTAATTATAT 60.039 37.037 0.00 0.00 0.00 0.86
978 996 1.961277 CGCAAGCTTGTTCCTCCGT 60.961 57.895 26.55 0.00 0.00 4.69
1033 1051 3.746045 TCCTAACTGACAGACAACCAC 57.254 47.619 10.08 0.00 0.00 4.16
1236 1257 1.739338 CGTATGGCTCCGAGAAGGCT 61.739 60.000 0.00 0.00 42.10 4.58
1584 1611 0.036164 ACGTTGGCCTGAGCATTGTA 59.964 50.000 3.32 0.00 42.56 2.41
1972 2672 8.123639 AGTATCAGTTTCTTCTTACTGCTACA 57.876 34.615 14.73 0.00 42.28 2.74
1973 2673 8.247562 AGTATCAGTTTCTTCTTACTGCTACAG 58.752 37.037 14.73 0.00 42.28 2.74
1975 2675 6.216569 TCAGTTTCTTCTTACTGCTACAGTG 58.783 40.000 10.42 0.00 45.01 3.66
1976 2676 4.991687 AGTTTCTTCTTACTGCTACAGTGC 59.008 41.667 10.42 0.00 45.01 4.40
1977 2677 4.873746 TTCTTCTTACTGCTACAGTGCT 57.126 40.909 10.42 0.00 45.01 4.40
1978 2678 5.977489 TTCTTCTTACTGCTACAGTGCTA 57.023 39.130 10.42 0.00 45.01 3.49
1986 2686 1.199327 TGCTACAGTGCTACGAGACAC 59.801 52.381 0.00 0.00 37.05 3.67
2001 2702 3.058914 CGAGACACAAGGTTTTGGTCATC 60.059 47.826 0.00 0.00 38.66 2.92
2097 2798 8.836268 ACGTCAGTTACTTGGATTGTTTATAA 57.164 30.769 0.00 0.00 0.00 0.98
2099 2800 8.932791 CGTCAGTTACTTGGATTGTTTATAACT 58.067 33.333 0.00 0.00 32.92 2.24
2154 2855 6.128715 CGCTCATATTGCTTTGTATCTGTAGG 60.129 42.308 0.00 0.00 0.00 3.18
2224 2928 7.652554 AGGGATCCCAAACTTTATTAGTGAAT 58.347 34.615 32.69 1.80 36.36 2.57
2229 2933 7.812648 TCCCAAACTTTATTAGTGAATCAACG 58.187 34.615 0.00 0.00 37.12 4.10
2249 2953 5.851047 ACGTTTAAAGGGATACAAAGACG 57.149 39.130 12.21 0.00 39.74 4.18
2250 2954 4.152938 ACGTTTAAAGGGATACAAAGACGC 59.847 41.667 12.21 0.00 39.74 5.19
2328 3032 0.524862 CAAGATTGTGTGCCTCCTGC 59.475 55.000 0.00 0.00 41.77 4.85
2330 3034 0.322277 AGATTGTGTGCCTCCTGCTG 60.322 55.000 0.00 0.00 42.00 4.41
2331 3035 1.303888 ATTGTGTGCCTCCTGCTGG 60.304 57.895 2.58 2.58 42.00 4.85
2332 3036 2.072874 ATTGTGTGCCTCCTGCTGGT 62.073 55.000 9.73 0.00 42.00 4.00
2333 3037 2.113986 GTGTGCCTCCTGCTGGTT 59.886 61.111 9.73 0.00 42.00 3.67
2335 3039 0.674895 GTGTGCCTCCTGCTGGTTAG 60.675 60.000 9.73 0.39 42.00 2.34
2336 3040 0.835971 TGTGCCTCCTGCTGGTTAGA 60.836 55.000 9.73 0.00 42.00 2.10
2399 3109 6.650807 TGACCTTTGAATCTGTAGCTAGTTTG 59.349 38.462 0.00 0.00 0.00 2.93
2417 3127 9.353999 GCTAGTTTGTATATTTTTCTTGGTTGG 57.646 33.333 0.00 0.00 0.00 3.77
2444 3154 1.340889 TGGGCTTAGTTGCTGCAAAAG 59.659 47.619 17.80 17.96 0.00 2.27
2761 3482 7.538303 TGATACAACATGTACACTTGCATAG 57.462 36.000 12.89 0.00 35.42 2.23
2804 3525 9.702494 GCGTACCTGAATAACTTATATTACCTT 57.298 33.333 0.00 0.00 0.00 3.50
2811 3570 9.005318 TGAATAACTTATATTACCTTGGTCCCA 57.995 33.333 0.00 0.00 0.00 4.37
2826 3585 6.183360 CCTTGGTCCCAAAATTACTTGTCTTT 60.183 38.462 0.00 0.00 35.33 2.52
2864 3627 6.897259 TGGATGTATCTAACACTAAAACGC 57.103 37.500 0.00 0.00 42.09 4.84
2869 3632 2.758009 TCTAACACTAAAACGCGCCTT 58.242 42.857 5.73 1.46 0.00 4.35
2920 3683 2.357009 GGACGGAGCGAGTATTCACTAA 59.643 50.000 0.00 0.00 34.21 2.24
2933 3696 9.967346 CGAGTATTCACTAATCAAATTCTAGGA 57.033 33.333 0.00 0.00 34.21 2.94
3156 3976 1.714794 AGTCGATTCTGAAAGGTGCG 58.285 50.000 0.00 0.00 0.00 5.34
3176 4115 6.581166 GGTGCGACTTTAATTTAGTGAAAAGG 59.419 38.462 0.00 0.00 34.07 3.11
3401 4342 4.436584 GCCAAAATCTCAGACGTCTTGATG 60.437 45.833 23.42 15.96 0.00 3.07
3402 4343 4.931601 CCAAAATCTCAGACGTCTTGATGA 59.068 41.667 23.42 15.46 0.00 2.92
3403 4344 5.583854 CCAAAATCTCAGACGTCTTGATGAT 59.416 40.000 23.42 17.38 0.00 2.45
3654 4632 2.282958 TCGTTCCAGCTCCTCGGT 60.283 61.111 0.00 0.00 0.00 4.69
3849 4827 1.222936 CGCCTCCTTCATCTGGCTT 59.777 57.895 0.00 0.00 42.90 4.35
4115 5093 1.202639 TGCTGAAGACACGGTGTGAAT 60.203 47.619 20.06 4.07 36.96 2.57
4123 5101 2.616842 GACACGGTGTGAATTTTGGAGT 59.383 45.455 20.06 0.00 36.96 3.85
4160 5138 5.230942 AGTGAGAAACTATCAGTTGGTTCG 58.769 41.667 0.00 0.00 38.66 3.95
4180 5160 1.134551 GGAAGTGGCATGTCTCTCTCC 60.135 57.143 1.78 8.25 0.00 3.71
4191 5171 2.501723 TGTCTCTCTCCTGTAATTGGGC 59.498 50.000 0.00 0.00 0.00 5.36
4195 5175 1.207089 CTCTCCTGTAATTGGGCGACA 59.793 52.381 0.00 0.00 0.00 4.35
4200 5180 1.670811 CTGTAATTGGGCGACATGGAC 59.329 52.381 0.00 0.00 0.00 4.02
4201 5181 1.280710 TGTAATTGGGCGACATGGACT 59.719 47.619 0.00 0.00 0.00 3.85
4202 5182 2.502130 TGTAATTGGGCGACATGGACTA 59.498 45.455 0.00 0.00 0.00 2.59
4203 5183 3.135712 TGTAATTGGGCGACATGGACTAT 59.864 43.478 0.00 0.00 0.00 2.12
4204 5184 4.345547 TGTAATTGGGCGACATGGACTATA 59.654 41.667 0.00 0.00 0.00 1.31
4205 5185 4.640771 AATTGGGCGACATGGACTATAT 57.359 40.909 0.00 0.00 0.00 0.86
4206 5186 4.640771 ATTGGGCGACATGGACTATATT 57.359 40.909 0.00 0.00 0.00 1.28
4207 5187 3.678056 TGGGCGACATGGACTATATTC 57.322 47.619 0.00 0.00 0.00 1.75
4208 5188 3.239449 TGGGCGACATGGACTATATTCT 58.761 45.455 0.00 0.00 0.00 2.40
4209 5189 3.258372 TGGGCGACATGGACTATATTCTC 59.742 47.826 0.00 0.00 0.00 2.87
4210 5190 3.502920 GGCGACATGGACTATATTCTCG 58.497 50.000 0.00 0.00 0.00 4.04
4211 5191 3.057456 GGCGACATGGACTATATTCTCGT 60.057 47.826 0.00 0.00 0.00 4.18
4212 5192 4.155462 GGCGACATGGACTATATTCTCGTA 59.845 45.833 0.00 0.00 0.00 3.43
4213 5193 5.325494 GCGACATGGACTATATTCTCGTAG 58.675 45.833 0.00 0.00 0.00 3.51
4214 5194 5.121925 GCGACATGGACTATATTCTCGTAGA 59.878 44.000 0.00 0.00 0.00 2.59
4215 5195 6.348295 GCGACATGGACTATATTCTCGTAGAA 60.348 42.308 0.00 0.79 38.78 2.10
4216 5196 7.016466 CGACATGGACTATATTCTCGTAGAAC 58.984 42.308 0.00 0.00 37.00 3.01
4217 5197 7.216973 ACATGGACTATATTCTCGTAGAACC 57.783 40.000 0.00 0.00 37.00 3.62
4218 5198 6.776116 ACATGGACTATATTCTCGTAGAACCA 59.224 38.462 0.00 0.00 37.00 3.67
4715 5695 7.496346 TTCTAGGACATCTTAAGGTCATTGT 57.504 36.000 12.22 5.36 37.94 2.71
4820 5800 9.632638 ATGTTTGCTGTTGGATATATTCTAAGT 57.367 29.630 0.00 0.00 0.00 2.24
5097 6078 1.306148 CAGGATGCCGTCTACGAGTA 58.694 55.000 3.65 0.00 43.02 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.803426 CGACCGACTCCTGCCTGC 62.803 72.222 0.00 0.00 0.00 4.85
2 3 2.043852 ATCGACCGACTCCTGCCT 60.044 61.111 0.00 0.00 0.00 4.75
3 4 2.105128 CATCGACCGACTCCTGCC 59.895 66.667 0.00 0.00 0.00 4.85
4 5 1.517257 CACATCGACCGACTCCTGC 60.517 63.158 0.00 0.00 0.00 4.85
5 6 0.456824 CACACATCGACCGACTCCTG 60.457 60.000 0.00 0.00 0.00 3.86
6 7 1.595993 CCACACATCGACCGACTCCT 61.596 60.000 0.00 0.00 0.00 3.69
7 8 1.153823 CCACACATCGACCGACTCC 60.154 63.158 0.00 0.00 0.00 3.85
8 9 0.179161 CTCCACACATCGACCGACTC 60.179 60.000 0.00 0.00 0.00 3.36
9 10 0.894184 ACTCCACACATCGACCGACT 60.894 55.000 0.00 0.00 0.00 4.18
10 11 0.806868 TACTCCACACATCGACCGAC 59.193 55.000 0.00 0.00 0.00 4.79
11 12 1.536940 TTACTCCACACATCGACCGA 58.463 50.000 0.00 0.00 0.00 4.69
12 13 2.579207 ATTACTCCACACATCGACCG 57.421 50.000 0.00 0.00 0.00 4.79
13 14 4.650754 ACTATTACTCCACACATCGACC 57.349 45.455 0.00 0.00 0.00 4.79
14 15 6.374565 ACTACTATTACTCCACACATCGAC 57.625 41.667 0.00 0.00 0.00 4.20
15 16 7.503549 TCTACTACTATTACTCCACACATCGA 58.496 38.462 0.00 0.00 0.00 3.59
16 17 7.725818 TCTACTACTATTACTCCACACATCG 57.274 40.000 0.00 0.00 0.00 3.84
17 18 8.024285 GCATCTACTACTATTACTCCACACATC 58.976 40.741 0.00 0.00 0.00 3.06
18 19 7.505923 TGCATCTACTACTATTACTCCACACAT 59.494 37.037 0.00 0.00 0.00 3.21
19 20 6.831868 TGCATCTACTACTATTACTCCACACA 59.168 38.462 0.00 0.00 0.00 3.72
20 21 7.228906 TCTGCATCTACTACTATTACTCCACAC 59.771 40.741 0.00 0.00 0.00 3.82
21 22 7.287810 TCTGCATCTACTACTATTACTCCACA 58.712 38.462 0.00 0.00 0.00 4.17
22 23 7.446013 ACTCTGCATCTACTACTATTACTCCAC 59.554 40.741 0.00 0.00 0.00 4.02
23 24 7.519057 ACTCTGCATCTACTACTATTACTCCA 58.481 38.462 0.00 0.00 0.00 3.86
24 25 7.148540 CGACTCTGCATCTACTACTATTACTCC 60.149 44.444 0.00 0.00 0.00 3.85
25 26 7.385752 ACGACTCTGCATCTACTACTATTACTC 59.614 40.741 0.00 0.00 0.00 2.59
26 27 7.218614 ACGACTCTGCATCTACTACTATTACT 58.781 38.462 0.00 0.00 0.00 2.24
27 28 7.424227 ACGACTCTGCATCTACTACTATTAC 57.576 40.000 0.00 0.00 0.00 1.89
28 29 8.447924 AAACGACTCTGCATCTACTACTATTA 57.552 34.615 0.00 0.00 0.00 0.98
29 30 6.945938 AACGACTCTGCATCTACTACTATT 57.054 37.500 0.00 0.00 0.00 1.73
30 31 6.292973 CGAAACGACTCTGCATCTACTACTAT 60.293 42.308 0.00 0.00 0.00 2.12
31 32 5.006455 CGAAACGACTCTGCATCTACTACTA 59.994 44.000 0.00 0.00 0.00 1.82
32 33 4.201832 CGAAACGACTCTGCATCTACTACT 60.202 45.833 0.00 0.00 0.00 2.57
33 34 4.029704 CGAAACGACTCTGCATCTACTAC 58.970 47.826 0.00 0.00 0.00 2.73
34 35 3.064958 CCGAAACGACTCTGCATCTACTA 59.935 47.826 0.00 0.00 0.00 1.82
35 36 2.159366 CCGAAACGACTCTGCATCTACT 60.159 50.000 0.00 0.00 0.00 2.57
36 37 2.186076 CCGAAACGACTCTGCATCTAC 58.814 52.381 0.00 0.00 0.00 2.59
37 38 1.816835 ACCGAAACGACTCTGCATCTA 59.183 47.619 0.00 0.00 0.00 1.98
38 39 0.603569 ACCGAAACGACTCTGCATCT 59.396 50.000 0.00 0.00 0.00 2.90
39 40 0.992802 GACCGAAACGACTCTGCATC 59.007 55.000 0.00 0.00 0.00 3.91
40 41 0.603569 AGACCGAAACGACTCTGCAT 59.396 50.000 0.00 0.00 0.00 3.96
41 42 0.039437 GAGACCGAAACGACTCTGCA 60.039 55.000 0.00 0.00 31.78 4.41
42 43 0.733223 GGAGACCGAAACGACTCTGC 60.733 60.000 0.00 0.00 33.58 4.26
43 44 0.882474 AGGAGACCGAAACGACTCTG 59.118 55.000 0.00 0.00 33.58 3.35
44 45 1.269998 CAAGGAGACCGAAACGACTCT 59.730 52.381 0.00 0.00 33.58 3.24
45 46 1.268899 TCAAGGAGACCGAAACGACTC 59.731 52.381 0.00 0.00 32.86 3.36
46 47 1.000496 GTCAAGGAGACCGAAACGACT 60.000 52.381 0.00 0.00 41.56 4.18
47 48 1.416373 GTCAAGGAGACCGAAACGAC 58.584 55.000 0.00 0.00 41.56 4.34
48 49 3.879912 GTCAAGGAGACCGAAACGA 57.120 52.632 0.00 0.00 41.56 3.85
57 58 1.608055 TTACGTCCGTGTCAAGGAGA 58.392 50.000 7.86 0.00 38.65 3.71
58 59 2.259618 CATTACGTCCGTGTCAAGGAG 58.740 52.381 7.86 5.42 38.65 3.69
59 60 1.670674 GCATTACGTCCGTGTCAAGGA 60.671 52.381 3.03 3.03 34.99 3.36
60 61 0.719465 GCATTACGTCCGTGTCAAGG 59.281 55.000 1.98 0.00 0.00 3.61
61 62 0.719465 GGCATTACGTCCGTGTCAAG 59.281 55.000 1.98 0.00 0.00 3.02
62 63 0.319083 AGGCATTACGTCCGTGTCAA 59.681 50.000 1.98 0.00 0.00 3.18
63 64 1.175654 TAGGCATTACGTCCGTGTCA 58.824 50.000 1.98 0.00 0.00 3.58
64 65 2.503920 ATAGGCATTACGTCCGTGTC 57.496 50.000 1.98 0.00 0.00 3.67
65 66 4.038282 TGAATATAGGCATTACGTCCGTGT 59.962 41.667 1.98 0.00 0.00 4.49
66 67 4.552355 TGAATATAGGCATTACGTCCGTG 58.448 43.478 1.98 0.00 0.00 4.94
67 68 4.859304 TGAATATAGGCATTACGTCCGT 57.141 40.909 0.00 0.00 0.00 4.69
68 69 5.407502 TCATGAATATAGGCATTACGTCCG 58.592 41.667 0.00 0.00 0.00 4.79
69 70 7.041721 TGATCATGAATATAGGCATTACGTCC 58.958 38.462 0.00 0.00 0.00 4.79
70 71 8.654230 ATGATCATGAATATAGGCATTACGTC 57.346 34.615 7.59 0.00 0.00 4.34
71 72 8.886719 CAATGATCATGAATATAGGCATTACGT 58.113 33.333 9.46 0.00 0.00 3.57
72 73 7.854422 GCAATGATCATGAATATAGGCATTACG 59.146 37.037 9.46 0.00 0.00 3.18
73 74 8.133627 GGCAATGATCATGAATATAGGCATTAC 58.866 37.037 9.46 0.00 0.00 1.89
74 75 8.057011 AGGCAATGATCATGAATATAGGCATTA 58.943 33.333 9.46 0.00 0.00 1.90
75 76 6.895756 AGGCAATGATCATGAATATAGGCATT 59.104 34.615 9.46 0.00 0.00 3.56
76 77 6.432581 AGGCAATGATCATGAATATAGGCAT 58.567 36.000 9.46 0.60 0.00 4.40
77 78 5.823312 AGGCAATGATCATGAATATAGGCA 58.177 37.500 9.46 0.00 0.00 4.75
78 79 6.770746 AAGGCAATGATCATGAATATAGGC 57.229 37.500 9.46 2.86 0.00 3.93
79 80 9.848710 ATCTAAGGCAATGATCATGAATATAGG 57.151 33.333 9.46 0.00 0.00 2.57
83 84 9.538508 CGATATCTAAGGCAATGATCATGAATA 57.461 33.333 9.46 0.00 0.00 1.75
84 85 8.045507 ACGATATCTAAGGCAATGATCATGAAT 58.954 33.333 9.46 0.00 0.00 2.57
85 86 7.389232 ACGATATCTAAGGCAATGATCATGAA 58.611 34.615 9.46 0.00 0.00 2.57
86 87 6.939622 ACGATATCTAAGGCAATGATCATGA 58.060 36.000 9.46 0.00 0.00 3.07
87 88 6.257411 GGACGATATCTAAGGCAATGATCATG 59.743 42.308 9.46 4.95 0.00 3.07
88 89 6.344500 GGACGATATCTAAGGCAATGATCAT 58.656 40.000 1.18 1.18 0.00 2.45
89 90 5.622233 CGGACGATATCTAAGGCAATGATCA 60.622 44.000 0.00 0.00 0.00 2.92
90 91 4.800993 CGGACGATATCTAAGGCAATGATC 59.199 45.833 0.34 0.00 0.00 2.92
91 92 4.382040 CCGGACGATATCTAAGGCAATGAT 60.382 45.833 0.00 0.00 0.00 2.45
92 93 3.056821 CCGGACGATATCTAAGGCAATGA 60.057 47.826 0.00 0.00 0.00 2.57
93 94 3.254060 CCGGACGATATCTAAGGCAATG 58.746 50.000 0.00 0.00 0.00 2.82
94 95 2.353803 GCCGGACGATATCTAAGGCAAT 60.354 50.000 5.05 0.00 40.03 3.56
95 96 1.000506 GCCGGACGATATCTAAGGCAA 59.999 52.381 5.05 0.00 40.03 4.52
96 97 0.601558 GCCGGACGATATCTAAGGCA 59.398 55.000 5.05 0.00 40.03 4.75
97 98 0.601558 TGCCGGACGATATCTAAGGC 59.398 55.000 5.05 16.44 40.41 4.35
98 99 2.492088 TCATGCCGGACGATATCTAAGG 59.508 50.000 5.05 0.59 0.00 2.69
99 100 3.850122 TCATGCCGGACGATATCTAAG 57.150 47.619 5.05 0.00 0.00 2.18
100 101 6.096282 TCAATATCATGCCGGACGATATCTAA 59.904 38.462 5.05 0.22 32.47 2.10
101 102 5.592688 TCAATATCATGCCGGACGATATCTA 59.407 40.000 5.05 2.51 32.47 1.98
102 103 4.402474 TCAATATCATGCCGGACGATATCT 59.598 41.667 5.05 2.11 32.47 1.98
103 104 4.682787 TCAATATCATGCCGGACGATATC 58.317 43.478 5.05 0.00 32.47 1.63
104 105 4.736126 TCAATATCATGCCGGACGATAT 57.264 40.909 5.05 10.19 34.55 1.63
105 106 4.529109 TTCAATATCATGCCGGACGATA 57.471 40.909 5.05 8.06 0.00 2.92
106 107 3.401033 TTCAATATCATGCCGGACGAT 57.599 42.857 5.05 5.71 0.00 3.73
107 108 2.900716 TTCAATATCATGCCGGACGA 57.099 45.000 5.05 0.00 0.00 4.20
108 109 3.062639 GCTATTCAATATCATGCCGGACG 59.937 47.826 5.05 0.00 0.00 4.79
109 110 4.002982 TGCTATTCAATATCATGCCGGAC 58.997 43.478 5.05 0.00 0.00 4.79
110 111 4.284829 TGCTATTCAATATCATGCCGGA 57.715 40.909 5.05 0.00 0.00 5.14
111 112 6.293790 CCATATGCTATTCAATATCATGCCGG 60.294 42.308 0.00 0.00 0.00 6.13
112 113 6.293790 CCCATATGCTATTCAATATCATGCCG 60.294 42.308 4.30 0.00 0.00 5.69
113 114 6.774170 TCCCATATGCTATTCAATATCATGCC 59.226 38.462 4.30 0.00 0.00 4.40
199 200 5.601729 TCTCTAGGAGGTCGTATTAGAGTGA 59.398 44.000 6.70 0.00 38.80 3.41
284 286 3.190118 GCCAGCCAACTAATCATGCTATC 59.810 47.826 0.00 0.00 0.00 2.08
306 308 6.304356 TCTTGTTTGACATTCAGCAAGTAG 57.696 37.500 15.74 0.00 39.68 2.57
307 309 6.882610 ATCTTGTTTGACATTCAGCAAGTA 57.117 33.333 15.74 8.40 39.68 2.24
308 310 5.779529 ATCTTGTTTGACATTCAGCAAGT 57.220 34.783 15.74 6.91 39.68 3.16
309 311 7.365741 ACTAATCTTGTTTGACATTCAGCAAG 58.634 34.615 12.53 12.53 39.87 4.01
317 319 6.959639 ACCACAACTAATCTTGTTTGACAT 57.040 33.333 0.00 0.00 31.73 3.06
409 414 5.193679 GGCAGTGGTAGTTAAATCCATTCT 58.806 41.667 0.00 0.00 33.68 2.40
429 434 1.805943 CACAAGATGAACATGTCGGCA 59.194 47.619 0.00 0.00 0.00 5.69
433 438 4.259570 CGATCGTCACAAGATGAACATGTC 60.260 45.833 7.03 0.00 42.72 3.06
454 459 8.200120 CCATTAATATAATCCTGATCAGCTCGA 58.800 37.037 17.76 9.78 0.00 4.04
468 473 6.491062 TCTGTGCTTGCTGCCATTAATATAAT 59.509 34.615 0.00 0.00 42.00 1.28
469 474 5.827267 TCTGTGCTTGCTGCCATTAATATAA 59.173 36.000 0.00 0.00 42.00 0.98
470 475 5.375773 TCTGTGCTTGCTGCCATTAATATA 58.624 37.500 0.00 0.00 42.00 0.86
471 476 4.209538 TCTGTGCTTGCTGCCATTAATAT 58.790 39.130 0.00 0.00 42.00 1.28
472 477 3.619419 TCTGTGCTTGCTGCCATTAATA 58.381 40.909 0.00 0.00 42.00 0.98
492 497 1.282157 AGGGTGTACTGAAGGCCATTC 59.718 52.381 5.01 6.76 38.50 2.67
547 552 7.214467 TGTCCGATTGAGCTCTTTTAATTTT 57.786 32.000 16.19 0.00 0.00 1.82
679 687 0.813184 ATGCGCTCATTTTGGTCAGG 59.187 50.000 9.73 0.00 0.00 3.86
680 688 2.223340 GGTATGCGCTCATTTTGGTCAG 60.223 50.000 9.73 0.00 34.22 3.51
693 701 3.111038 GCCAGAAAGGGTATGCGC 58.889 61.111 0.00 0.00 38.09 6.09
735 751 9.719355 TCTAGATGTGCTTTAACAAAACTGATA 57.281 29.630 0.00 0.00 32.81 2.15
736 752 8.621532 TCTAGATGTGCTTTAACAAAACTGAT 57.378 30.769 0.00 0.00 32.81 2.90
737 753 8.506437 CATCTAGATGTGCTTTAACAAAACTGA 58.494 33.333 22.42 0.00 34.23 3.41
738 754 8.665175 CATCTAGATGTGCTTTAACAAAACTG 57.335 34.615 22.42 0.00 34.23 3.16
754 770 8.992835 TGCAATACTTATAGCACATCTAGATG 57.007 34.615 27.63 27.63 44.15 2.90
771 787 9.836864 TGACATAGAATTTAGATGTGCAATACT 57.163 29.630 5.76 0.00 33.99 2.12
775 791 9.176460 TGAATGACATAGAATTTAGATGTGCAA 57.824 29.630 5.76 0.00 33.99 4.08
776 792 8.735692 TGAATGACATAGAATTTAGATGTGCA 57.264 30.769 5.76 0.00 33.99 4.57
777 793 9.823098 GATGAATGACATAGAATTTAGATGTGC 57.177 33.333 5.76 0.00 39.56 4.57
792 808 8.771766 CGAATCTCAACATAAGATGAATGACAT 58.228 33.333 0.00 0.00 42.47 3.06
793 809 7.765819 ACGAATCTCAACATAAGATGAATGACA 59.234 33.333 0.00 0.00 33.78 3.58
794 810 8.060679 CACGAATCTCAACATAAGATGAATGAC 58.939 37.037 0.00 0.00 33.78 3.06
795 811 7.765819 ACACGAATCTCAACATAAGATGAATGA 59.234 33.333 0.00 0.00 33.78 2.57
796 812 7.913423 ACACGAATCTCAACATAAGATGAATG 58.087 34.615 0.00 0.00 33.78 2.67
797 813 9.254133 CTACACGAATCTCAACATAAGATGAAT 57.746 33.333 0.00 0.00 33.78 2.57
798 814 8.466798 TCTACACGAATCTCAACATAAGATGAA 58.533 33.333 0.00 0.00 33.78 2.57
799 815 7.996385 TCTACACGAATCTCAACATAAGATGA 58.004 34.615 0.00 0.00 33.78 2.92
800 816 8.809159 ATCTACACGAATCTCAACATAAGATG 57.191 34.615 0.00 0.00 33.78 2.90
858 874 9.896645 AGTTATGACACATCTAAATGAGTGAAT 57.103 29.630 0.00 0.00 36.91 2.57
864 880 9.665719 TGCTTTAGTTATGACACATCTAAATGA 57.334 29.630 0.00 0.00 36.67 2.57
877 893 9.645059 GCACATCTAGATATGCTTTAGTTATGA 57.355 33.333 25.39 0.00 38.16 2.15
878 894 8.877779 GGCACATCTAGATATGCTTTAGTTATG 58.122 37.037 29.70 7.22 40.81 1.90
879 895 8.043710 GGGCACATCTAGATATGCTTTAGTTAT 58.956 37.037 29.70 0.00 40.81 1.89
880 896 7.235606 AGGGCACATCTAGATATGCTTTAGTTA 59.764 37.037 29.70 0.00 40.81 2.24
881 897 6.043706 AGGGCACATCTAGATATGCTTTAGTT 59.956 38.462 29.70 10.86 40.81 2.24
882 898 5.545723 AGGGCACATCTAGATATGCTTTAGT 59.454 40.000 29.70 11.62 40.81 2.24
883 899 6.047511 AGGGCACATCTAGATATGCTTTAG 57.952 41.667 29.70 8.18 40.81 1.85
884 900 6.954102 TCTAGGGCACATCTAGATATGCTTTA 59.046 38.462 29.70 21.31 40.81 1.85
885 901 4.989875 AGGGCACATCTAGATATGCTTT 57.010 40.909 29.70 18.03 40.81 3.51
886 902 5.186797 GTCTAGGGCACATCTAGATATGCTT 59.813 44.000 29.70 21.62 43.25 3.91
887 903 4.709397 GTCTAGGGCACATCTAGATATGCT 59.291 45.833 29.70 17.06 43.25 3.79
888 904 4.464244 TGTCTAGGGCACATCTAGATATGC 59.536 45.833 24.83 24.83 43.25 3.14
889 905 5.478332 TGTGTCTAGGGCACATCTAGATATG 59.522 44.000 6.64 6.64 43.25 1.78
890 906 5.478679 GTGTGTCTAGGGCACATCTAGATAT 59.521 44.000 18.92 0.00 46.66 1.63
891 907 4.827835 GTGTGTCTAGGGCACATCTAGATA 59.172 45.833 18.92 0.00 46.66 1.98
892 908 3.639094 GTGTGTCTAGGGCACATCTAGAT 59.361 47.826 18.92 0.00 46.66 1.98
893 909 3.024547 GTGTGTCTAGGGCACATCTAGA 58.975 50.000 18.92 0.00 46.66 2.43
894 910 2.101582 GGTGTGTCTAGGGCACATCTAG 59.898 54.545 18.92 0.00 46.66 2.43
895 911 2.108168 GGTGTGTCTAGGGCACATCTA 58.892 52.381 18.92 0.21 46.66 1.98
896 912 0.905357 GGTGTGTCTAGGGCACATCT 59.095 55.000 18.92 0.00 46.66 2.90
897 913 0.460284 CGGTGTGTCTAGGGCACATC 60.460 60.000 18.92 17.70 46.66 3.06
898 914 0.902984 TCGGTGTGTCTAGGGCACAT 60.903 55.000 18.92 0.00 46.66 3.21
899 915 0.902984 ATCGGTGTGTCTAGGGCACA 60.903 55.000 14.22 14.22 43.60 4.57
900 916 0.249398 AATCGGTGTGTCTAGGGCAC 59.751 55.000 10.20 10.20 37.37 5.01
901 917 1.855295 TAATCGGTGTGTCTAGGGCA 58.145 50.000 0.00 0.00 0.00 5.36
902 918 2.973694 TTAATCGGTGTGTCTAGGGC 57.026 50.000 0.00 0.00 0.00 5.19
919 935 9.537192 GTGGCCGTTGTGCTATATATATAATTA 57.463 33.333 0.00 0.00 0.00 1.40
920 936 8.044309 TGTGGCCGTTGTGCTATATATATAATT 58.956 33.333 0.00 0.00 0.00 1.40
921 937 7.494625 GTGTGGCCGTTGTGCTATATATATAAT 59.505 37.037 0.00 0.00 0.00 1.28
922 938 6.814644 GTGTGGCCGTTGTGCTATATATATAA 59.185 38.462 0.00 0.00 0.00 0.98
923 939 6.334989 GTGTGGCCGTTGTGCTATATATATA 58.665 40.000 0.00 2.49 0.00 0.86
924 940 5.175859 GTGTGGCCGTTGTGCTATATATAT 58.824 41.667 0.00 0.00 0.00 0.86
925 941 4.562082 GTGTGGCCGTTGTGCTATATATA 58.438 43.478 0.00 0.00 0.00 0.86
926 942 3.399330 GTGTGGCCGTTGTGCTATATAT 58.601 45.455 0.00 0.00 0.00 0.86
927 943 2.800273 CGTGTGGCCGTTGTGCTATATA 60.800 50.000 0.00 0.00 0.00 0.86
1005 1023 6.419484 TGTCTGTCAGTTAGGATTTCTTGA 57.581 37.500 0.00 0.00 0.00 3.02
1033 1051 1.694150 TCCTTGTTCCTCACTCTGTGG 59.306 52.381 0.00 0.00 33.87 4.17
1093 1111 1.601759 GCTGCTGGTCATGTGGTGT 60.602 57.895 0.00 0.00 0.00 4.16
1302 1323 3.429141 GTGACGAGCGACTCCGGA 61.429 66.667 2.93 2.93 36.06 5.14
1535 1562 0.460987 GGAGAGGAACAGCGTCATGG 60.461 60.000 0.00 0.00 33.89 3.66
1568 1595 3.575506 CCTACAATGCTCAGGCCAA 57.424 52.632 5.01 0.00 37.74 4.52
1681 1708 4.767255 CCTCCCACTCACCTGCGC 62.767 72.222 0.00 0.00 0.00 6.09
1691 1718 1.268283 CCTCCAGTCCTTCCTCCCAC 61.268 65.000 0.00 0.00 0.00 4.61
1970 2670 1.000163 CCTTGTGTCTCGTAGCACTGT 60.000 52.381 0.00 0.00 36.63 3.55
1971 2671 1.000163 ACCTTGTGTCTCGTAGCACTG 60.000 52.381 0.00 0.00 36.63 3.66
1972 2672 1.329256 ACCTTGTGTCTCGTAGCACT 58.671 50.000 0.00 0.00 36.63 4.40
1973 2673 2.150397 AACCTTGTGTCTCGTAGCAC 57.850 50.000 0.00 0.00 36.26 4.40
1974 2674 2.869801 CAAAACCTTGTGTCTCGTAGCA 59.130 45.455 0.00 0.00 0.00 3.49
1975 2675 2.223377 CCAAAACCTTGTGTCTCGTAGC 59.777 50.000 0.00 0.00 0.00 3.58
1976 2676 3.463944 ACCAAAACCTTGTGTCTCGTAG 58.536 45.455 0.00 0.00 0.00 3.51
1977 2677 3.118702 TGACCAAAACCTTGTGTCTCGTA 60.119 43.478 0.00 0.00 35.47 3.43
1978 2678 2.285977 GACCAAAACCTTGTGTCTCGT 58.714 47.619 0.00 0.00 33.46 4.18
1986 2686 5.418676 ACAAACAAGATGACCAAAACCTTG 58.581 37.500 0.00 0.00 39.84 3.61
2001 2702 6.264067 AGGAAAGGAGAATGAGAACAAACAAG 59.736 38.462 0.00 0.00 0.00 3.16
2097 2798 9.578439 GGTAACTGACGTTAACTGATATAAAGT 57.422 33.333 3.71 0.00 39.64 2.66
2099 2800 7.220683 GCGGTAACTGACGTTAACTGATATAAA 59.779 37.037 3.71 0.00 40.40 1.40
2100 2801 6.692681 GCGGTAACTGACGTTAACTGATATAA 59.307 38.462 3.71 0.00 40.40 0.98
2102 2803 5.039333 GCGGTAACTGACGTTAACTGATAT 58.961 41.667 3.71 0.00 40.40 1.63
2103 2804 4.414852 GCGGTAACTGACGTTAACTGATA 58.585 43.478 3.71 0.00 40.40 2.15
2104 2805 3.248266 GCGGTAACTGACGTTAACTGAT 58.752 45.455 3.71 0.00 40.40 2.90
2105 2806 2.607771 GGCGGTAACTGACGTTAACTGA 60.608 50.000 3.71 0.00 40.40 3.41
2106 2807 1.723003 GGCGGTAACTGACGTTAACTG 59.277 52.381 3.71 0.09 40.40 3.16
2107 2808 1.666888 CGGCGGTAACTGACGTTAACT 60.667 52.381 0.00 0.00 40.40 2.24
2108 2809 0.710017 CGGCGGTAACTGACGTTAAC 59.290 55.000 0.00 0.00 39.42 2.01
2109 2810 1.008361 GCGGCGGTAACTGACGTTAA 61.008 55.000 9.78 0.00 42.34 2.01
2110 2811 1.444212 GCGGCGGTAACTGACGTTA 60.444 57.895 9.78 0.00 42.34 3.18
2170 2871 3.067106 AGTACAGATTCAAAGGCACACG 58.933 45.455 0.00 0.00 0.00 4.49
2224 2928 6.073657 CGTCTTTGTATCCCTTTAAACGTTGA 60.074 38.462 0.00 0.00 0.00 3.18
2229 2933 5.410439 TGAGCGTCTTTGTATCCCTTTAAAC 59.590 40.000 0.00 0.00 0.00 2.01
2249 2953 2.039480 TGGCTGATATTCCCTCATGAGC 59.961 50.000 17.76 2.40 0.00 4.26
2250 2954 3.072038 TGTGGCTGATATTCCCTCATGAG 59.928 47.826 16.24 16.24 0.00 2.90
2367 3077 6.317140 GCTACAGATTCAAAGGTCATGATTCA 59.683 38.462 0.00 0.00 32.35 2.57
2368 3078 6.541641 AGCTACAGATTCAAAGGTCATGATTC 59.458 38.462 0.00 0.00 0.00 2.52
2374 3084 6.360370 AACTAGCTACAGATTCAAAGGTCA 57.640 37.500 0.00 0.00 0.00 4.02
2417 3127 3.673323 GCAGCAACTAAGCCCAACAATAC 60.673 47.826 0.00 0.00 34.23 1.89
2444 3154 7.545615 CCTTGTTTAAGCCCAACAATATCTTTC 59.454 37.037 6.24 0.00 41.99 2.62
2509 3225 9.301897 AGTAGAGTTTCCTTGATTAGCAATTTT 57.698 29.630 0.00 0.00 35.59 1.82
2523 3239 6.599638 GGCACATCATAAAAGTAGAGTTTCCT 59.400 38.462 0.00 0.00 0.00 3.36
2611 3327 3.129287 GGGATGCTGGACATTACTTTGTG 59.871 47.826 0.00 0.00 39.84 3.33
2624 3340 2.008268 GCACAAATCCGGGATGCTGG 62.008 60.000 10.96 5.55 33.44 4.85
2724 3445 5.778161 TGTTGTATCATGTGAACATCGAC 57.222 39.130 0.00 0.00 33.61 4.20
2753 3474 8.270799 GCACAATATATGTTTTTGCTATGCAAG 58.729 33.333 5.14 0.00 44.64 4.01
2761 3482 6.196353 CAGGTACGCACAATATATGTTTTTGC 59.804 38.462 5.79 5.79 41.46 3.68
2804 3525 5.894393 TCAAAGACAAGTAATTTTGGGACCA 59.106 36.000 0.00 0.00 32.76 4.02
2805 3526 6.399639 TCAAAGACAAGTAATTTTGGGACC 57.600 37.500 0.00 0.00 32.76 4.46
2806 3527 8.764287 CAAATCAAAGACAAGTAATTTTGGGAC 58.236 33.333 0.00 0.00 32.76 4.46
2892 3655 1.878522 CTCGCTCCGTCCCGAATTG 60.879 63.158 0.00 0.00 32.56 2.32
2907 3670 9.967346 TCCTAGAATTTGATTAGTGAATACTCG 57.033 33.333 0.00 0.00 38.36 4.18
2952 3719 8.871629 TTTGGTGGAACATTATACTATGTGTT 57.128 30.769 0.00 0.00 44.52 3.32
2965 3739 5.104982 ACACTTGAAACATTTGGTGGAACAT 60.105 36.000 0.00 0.00 44.52 2.71
3047 3824 0.752054 CTTTGCCTTCTTTGCACCCA 59.248 50.000 0.00 0.00 38.72 4.51
3156 3976 6.866770 GGTGCCCTTTTCACTAAATTAAAGTC 59.133 38.462 0.00 0.00 34.97 3.01
3176 4115 3.767131 AGGGTAAAAATGTACATGGTGCC 59.233 43.478 9.63 10.20 0.00 5.01
4115 5093 1.946768 CGACTGAAGCCAACTCCAAAA 59.053 47.619 0.00 0.00 0.00 2.44
4123 5101 2.235891 TCTCACTACGACTGAAGCCAA 58.764 47.619 0.00 0.00 0.00 4.52
4160 5138 1.134551 GGAGAGAGACATGCCACTTCC 60.135 57.143 0.00 0.00 0.00 3.46
4180 5160 1.670811 GTCCATGTCGCCCAATTACAG 59.329 52.381 0.00 0.00 0.00 2.74
4191 5171 6.723131 TCTACGAGAATATAGTCCATGTCG 57.277 41.667 7.69 7.69 0.00 4.35
4856 5836 5.029474 AGGGCTTTATTAAAAATGCCAGGA 58.971 37.500 15.72 0.00 46.39 3.86
4917 5897 6.014070 AGGTAAGTTCCTTTCTCTCTCCTTTC 60.014 42.308 0.00 0.00 33.52 2.62
4991 5972 0.758685 CTGGCGAGAGGAGGAGGATT 60.759 60.000 0.00 0.00 0.00 3.01
5054 6035 2.947532 CGGCAGAAGCAGGAGGTGA 61.948 63.158 0.00 0.00 44.61 4.02
5083 6064 1.638388 CGTGGTACTCGTAGACGGCA 61.638 60.000 1.67 0.00 40.68 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.