Multiple sequence alignment - TraesCS5A01G314400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G314400 chr5A 100.000 7582 0 0 1 7582 524913398 524905817 0.000000e+00 14002
1 TraesCS5A01G314400 chr5D 92.512 7292 298 117 21 7222 412745059 412737926 0.000000e+00 10213
2 TraesCS5A01G314400 chr5B 91.465 5530 230 117 22 5426 497220542 497215130 0.000000e+00 7374
3 TraesCS5A01G314400 chr5B 89.374 1788 91 44 5412 7169 497215107 497213389 0.000000e+00 2158
4 TraesCS5A01G314400 chr5B 91.765 170 13 1 7296 7465 587766322 587766154 1.270000e-57 235
5 TraesCS5A01G314400 chr7B 91.472 1501 97 17 1018 2510 323761216 323762693 0.000000e+00 2034
6 TraesCS5A01G314400 chr7B 85.458 612 61 13 2503 3114 323817001 323817584 5.030000e-171 612
7 TraesCS5A01G314400 chr2A 91.945 1018 62 11 1018 2025 160935341 160936348 0.000000e+00 1408
8 TraesCS5A01G314400 chr2A 86.689 586 50 10 2174 2759 161051203 161051760 6.460000e-175 625
9 TraesCS5A01G314400 chr2A 90.244 287 28 0 2828 3114 161060565 161060851 7.180000e-100 375
10 TraesCS5A01G314400 chr2A 92.405 158 12 0 2022 2179 161031312 161031469 7.650000e-55 226
11 TraesCS5A01G314400 chr2A 87.912 91 4 4 5187 5277 756499553 756499636 4.840000e-17 100
12 TraesCS5A01G314400 chr4B 92.771 166 11 1 7300 7465 43104012 43104176 9.830000e-59 239
13 TraesCS5A01G314400 chr1B 92.262 168 12 1 7298 7465 125755285 125755451 3.540000e-58 237
14 TraesCS5A01G314400 chr7D 92.216 167 12 1 7299 7465 363148832 363148997 1.270000e-57 235
15 TraesCS5A01G314400 chr6B 91.813 171 11 3 7297 7466 639991489 639991657 1.270000e-57 235
16 TraesCS5A01G314400 chr6B 80.473 169 15 10 1403 1555 485537400 485537566 6.220000e-21 113
17 TraesCS5A01G314400 chrUn 91.667 168 13 1 7298 7465 24831247 24831413 1.650000e-56 231
18 TraesCS5A01G314400 chrUn 91.667 168 13 1 7298 7465 24833765 24833931 1.650000e-56 231
19 TraesCS5A01G314400 chrUn 91.667 168 13 1 7298 7465 212860728 212860894 1.650000e-56 231
20 TraesCS5A01G314400 chr3D 89.503 181 17 2 7300 7479 131406693 131406514 2.130000e-55 228
21 TraesCS5A01G314400 chr6A 83.128 243 41 0 1882 2124 474333362 474333120 9.900000e-54 222
22 TraesCS5A01G314400 chr6A 79.882 169 16 10 1403 1555 474333820 474333654 2.890000e-19 108
23 TraesCS5A01G314400 chr6D 80.473 169 15 10 1403 1555 335068382 335068216 6.220000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G314400 chr5A 524905817 524913398 7581 True 14002 14002 100.0000 1 7582 1 chr5A.!!$R1 7581
1 TraesCS5A01G314400 chr5D 412737926 412745059 7133 True 10213 10213 92.5120 21 7222 1 chr5D.!!$R1 7201
2 TraesCS5A01G314400 chr5B 497213389 497220542 7153 True 4766 7374 90.4195 22 7169 2 chr5B.!!$R2 7147
3 TraesCS5A01G314400 chr7B 323761216 323762693 1477 False 2034 2034 91.4720 1018 2510 1 chr7B.!!$F1 1492
4 TraesCS5A01G314400 chr7B 323817001 323817584 583 False 612 612 85.4580 2503 3114 1 chr7B.!!$F2 611
5 TraesCS5A01G314400 chr2A 160935341 160936348 1007 False 1408 1408 91.9450 1018 2025 1 chr2A.!!$F1 1007
6 TraesCS5A01G314400 chr2A 161051203 161051760 557 False 625 625 86.6890 2174 2759 1 chr2A.!!$F3 585
7 TraesCS5A01G314400 chrUn 24831247 24833931 2684 False 231 231 91.6670 7298 7465 2 chrUn.!!$F2 167

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
488 520 0.030603 ACCCTTCTCCTCCCATCTCC 60.031 60.000 0.00 0.00 0.00 3.71 F
504 536 0.106217 CTCCCACTCTCCTCCTCCTC 60.106 65.000 0.00 0.00 0.00 3.71 F
1761 1813 0.036388 GCACCCAGATGAAGGTTCGA 60.036 55.000 0.00 0.00 32.72 3.71 F
2814 2900 0.174617 AGCCTAACTTGAGCTCGCTC 59.825 55.000 9.64 11.83 43.01 5.03 F
3514 3624 0.109319 CATTGTTTTCGCTTCCCGGG 60.109 55.000 16.85 16.85 37.59 5.73 F
3950 4108 0.247185 GCTAGGGCTTTGCATTTGCA 59.753 50.000 0.05 0.05 41.64 4.08 F
4012 4170 0.686789 TGCTCCGGTGATATCATGGG 59.313 55.000 20.66 18.11 0.00 4.00 F
5124 5301 1.490490 TGACAGAACTCCTTGCAACCT 59.510 47.619 0.00 0.00 0.00 3.50 F
5502 5716 0.469705 ATGCCCACCAAAGCTGTCAA 60.470 50.000 0.00 0.00 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1641 1693 0.890996 GGTGTGGGCACTCCTTGAAG 60.891 60.000 0.00 0.00 44.65 3.02 R
1865 1940 1.152777 CTGCAACCAACCCACAGGA 60.153 57.895 0.00 0.00 36.73 3.86 R
3359 3457 0.109226 CCTTCGTCCACGTCCTTCTC 60.109 60.000 0.00 0.00 40.80 2.87 R
3912 4067 0.110509 CTAAACACACTGCGCTGCTG 60.111 55.000 14.80 13.53 0.00 4.41 R
4673 4846 1.229359 CTGCCTGGCCATCATCCTT 59.771 57.895 17.53 0.00 0.00 3.36 R
5117 5294 2.109128 TCCCTCCATTGTTTAGGTTGCA 59.891 45.455 0.00 0.00 0.00 4.08 R
5229 5407 2.218953 CATGAAACCTGCATCATGCC 57.781 50.000 13.52 0.00 44.40 4.40 R
6362 6602 0.542333 GGGAAGAAGGGTCAGTAGCC 59.458 60.000 0.00 0.00 44.09 3.93 R
7477 10248 0.324943 TACTGCTTTGACCTGCTCCC 59.675 55.000 0.00 0.00 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 75 2.413837 CCAGCCCGGTAATTAATCTCG 58.586 52.381 0.00 0.00 0.00 4.04
76 82 5.568223 GCCCGGTAATTAATCTCGAGGTAAT 60.568 44.000 13.56 13.48 0.00 1.89
78 84 6.589139 CCCGGTAATTAATCTCGAGGTAATTC 59.411 42.308 25.44 19.45 31.58 2.17
133 152 4.152625 GTGCGTGCGTGCCAGATC 62.153 66.667 0.00 0.00 0.00 2.75
136 155 4.457496 CGTGCGTGCCAGATCCCT 62.457 66.667 0.00 0.00 0.00 4.20
328 347 1.376166 CCACGGGTTTACATGGCGA 60.376 57.895 0.00 0.00 0.00 5.54
329 348 1.641123 CCACGGGTTTACATGGCGAC 61.641 60.000 0.00 0.00 0.00 5.19
330 349 1.738830 ACGGGTTTACATGGCGACG 60.739 57.895 0.00 0.00 0.00 5.12
331 350 1.446445 CGGGTTTACATGGCGACGA 60.446 57.895 0.00 0.00 0.00 4.20
332 351 1.418342 CGGGTTTACATGGCGACGAG 61.418 60.000 0.00 0.00 0.00 4.18
337 356 0.179181 TTACATGGCGACGAGACGAC 60.179 55.000 0.00 0.00 42.12 4.34
340 359 2.470362 ATGGCGACGAGACGACGAT 61.470 57.895 17.69 3.09 46.01 3.73
341 360 2.648102 GGCGACGAGACGACGATG 60.648 66.667 17.69 0.00 46.01 3.84
342 361 2.398429 GCGACGAGACGACGATGA 59.602 61.111 17.69 0.00 46.01 2.92
343 362 1.011019 GCGACGAGACGACGATGAT 60.011 57.895 17.69 0.00 46.01 2.45
344 363 0.231534 GCGACGAGACGACGATGATA 59.768 55.000 17.69 0.00 46.01 2.15
345 364 1.136308 GCGACGAGACGACGATGATAT 60.136 52.381 17.69 0.00 46.01 1.63
346 365 2.662249 GCGACGAGACGACGATGATATT 60.662 50.000 17.69 0.00 46.01 1.28
347 366 3.542690 CGACGAGACGACGATGATATTT 58.457 45.455 0.00 0.00 46.01 1.40
348 367 3.355209 CGACGAGACGACGATGATATTTG 59.645 47.826 0.00 0.00 46.01 2.32
349 368 4.280461 GACGAGACGACGATGATATTTGT 58.720 43.478 0.00 0.00 37.03 2.83
350 369 4.669318 ACGAGACGACGATGATATTTGTT 58.331 39.130 0.00 0.00 37.03 2.83
366 385 8.939929 TGATATTTGTTTGAGCTCTCTTAACAG 58.060 33.333 16.19 0.00 36.75 3.16
424 443 3.357079 CACCAACGCTGTCTGCCC 61.357 66.667 0.00 0.00 38.78 5.36
425 444 3.560251 ACCAACGCTGTCTGCCCT 61.560 61.111 0.00 0.00 38.78 5.19
426 445 3.052082 CCAACGCTGTCTGCCCTG 61.052 66.667 0.00 0.00 38.78 4.45
488 520 0.030603 ACCCTTCTCCTCCCATCTCC 60.031 60.000 0.00 0.00 0.00 3.71
502 534 0.560688 ATCTCCCACTCTCCTCCTCC 59.439 60.000 0.00 0.00 0.00 4.30
503 535 0.553862 TCTCCCACTCTCCTCCTCCT 60.554 60.000 0.00 0.00 0.00 3.69
504 536 0.106217 CTCCCACTCTCCTCCTCCTC 60.106 65.000 0.00 0.00 0.00 3.71
505 537 0.553862 TCCCACTCTCCTCCTCCTCT 60.554 60.000 0.00 0.00 0.00 3.69
572 606 3.549221 CGCCGTTTGTTGGTATTCAGTTT 60.549 43.478 0.00 0.00 0.00 2.66
573 607 3.733727 GCCGTTTGTTGGTATTCAGTTTG 59.266 43.478 0.00 0.00 0.00 2.93
575 609 5.583495 CCGTTTGTTGGTATTCAGTTTGAA 58.417 37.500 0.00 0.00 41.09 2.69
584 623 4.786575 GGTATTCAGTTTGAATTCGTTCGC 59.213 41.667 9.34 0.00 44.03 4.70
631 670 1.388531 GAGGGAGGGAGACTGGTGA 59.611 63.158 0.00 0.00 0.00 4.02
641 680 4.667858 AGGGAGACTGGTGATAGTATCTCT 59.332 45.833 11.40 5.30 43.08 3.10
651 690 1.526315 TAGTATCTCTGGGGTCGGGA 58.474 55.000 0.00 0.00 0.00 5.14
662 701 4.468689 GTCGGGAAGGAAGGGGCG 62.469 72.222 0.00 0.00 0.00 6.13
671 710 0.836400 AGGAAGGGGCGAAGTCAGAA 60.836 55.000 0.00 0.00 0.00 3.02
680 719 0.162507 CGAAGTCAGAAGCGCTGTTG 59.837 55.000 12.58 13.24 45.14 3.33
779 818 0.967380 GCCATGCCATGTATAGCCCC 60.967 60.000 3.63 0.00 0.00 5.80
799 838 4.202151 CCCCTTCCTGCTATTTTAATGCAC 60.202 45.833 0.00 0.00 32.91 4.57
919 961 3.594134 CAGGATCAATTCTCGGGATAGC 58.406 50.000 0.00 0.00 0.00 2.97
973 1021 1.529713 GAAAACCACAGCCGGGGAA 60.530 57.895 2.18 0.00 0.00 3.97
987 1035 1.087501 GGGGAATCTTTGTCTGTCGC 58.912 55.000 0.00 0.00 0.00 5.19
991 1039 2.160417 GGAATCTTTGTCTGTCGCTTGG 59.840 50.000 0.00 0.00 0.00 3.61
1343 1392 3.394836 GAGGGCGGAGGTCAGCTT 61.395 66.667 2.11 0.00 37.23 3.74
1606 1658 9.917129 GTCTACTTTCTATCTAGCCCTAAATTC 57.083 37.037 0.00 0.00 0.00 2.17
1607 1659 8.794553 TCTACTTTCTATCTAGCCCTAAATTCG 58.205 37.037 0.00 0.00 0.00 3.34
1608 1660 6.224584 ACTTTCTATCTAGCCCTAAATTCGC 58.775 40.000 0.00 0.00 0.00 4.70
1609 1661 5.801531 TTCTATCTAGCCCTAAATTCGCA 57.198 39.130 0.00 0.00 0.00 5.10
1610 1662 5.801531 TCTATCTAGCCCTAAATTCGCAA 57.198 39.130 0.00 0.00 0.00 4.85
1611 1663 5.784177 TCTATCTAGCCCTAAATTCGCAAG 58.216 41.667 0.00 0.00 0.00 4.01
1656 1708 1.371183 CGTCTTCAAGGAGTGCCCA 59.629 57.895 0.00 0.00 37.41 5.36
1761 1813 0.036388 GCACCCAGATGAAGGTTCGA 60.036 55.000 0.00 0.00 32.72 3.71
1837 1904 3.557228 AGCTAGGCCAAGAAGAATCAG 57.443 47.619 5.01 0.00 0.00 2.90
2588 2663 2.887360 GAGGTGCGCATTGCCATT 59.113 55.556 15.91 0.00 45.60 3.16
2615 2690 2.387309 CACTAGCGGTGCTTCATGG 58.613 57.895 0.00 0.00 40.44 3.66
2811 2897 1.086634 GCCAGCCTAACTTGAGCTCG 61.087 60.000 9.64 0.00 33.70 5.03
2814 2900 0.174617 AGCCTAACTTGAGCTCGCTC 59.825 55.000 9.64 11.83 43.01 5.03
2815 2901 0.174617 GCCTAACTTGAGCTCGCTCT 59.825 55.000 18.63 2.48 43.12 4.09
2823 2909 3.181169 GAGCTCGCTCTCTCGCTCC 62.181 68.421 11.49 0.00 42.20 4.70
2824 2910 3.209097 GCTCGCTCTCTCGCTCCT 61.209 66.667 0.00 0.00 0.00 3.69
2961 3050 1.445582 GTGGGTCATCGTGGACGTC 60.446 63.158 7.13 7.13 38.70 4.34
2976 3065 4.353437 GTCTCGGTGGACGGCGTT 62.353 66.667 16.19 0.00 44.45 4.84
3030 3119 4.109675 GGGTACATGGGCTGCCGT 62.110 66.667 13.40 7.78 0.00 5.68
3133 3226 3.622826 CCACCCACCGGTCGAACT 61.623 66.667 2.59 0.00 42.04 3.01
3143 3237 2.723719 GGTCGAACTAACGCGCCAC 61.724 63.158 5.73 0.00 0.00 5.01
3156 3250 4.783734 GCCACCCGTACCGTCGTC 62.784 72.222 0.00 0.00 0.00 4.20
3157 3251 4.120331 CCACCCGTACCGTCGTCC 62.120 72.222 0.00 0.00 0.00 4.79
3158 3252 3.364441 CACCCGTACCGTCGTCCA 61.364 66.667 0.00 0.00 0.00 4.02
3159 3253 3.365265 ACCCGTACCGTCGTCCAC 61.365 66.667 0.00 0.00 0.00 4.02
3222 3316 2.589540 CTACCGCCAGCCCATGAA 59.410 61.111 0.00 0.00 0.00 2.57
3226 3320 3.443045 CGCCAGCCCATGAACCAC 61.443 66.667 0.00 0.00 0.00 4.16
3238 3332 3.338249 CATGAACCACGATCAGTCCTTT 58.662 45.455 0.00 0.00 0.00 3.11
3239 3333 3.040147 TGAACCACGATCAGTCCTTTC 57.960 47.619 0.00 0.00 0.00 2.62
3250 3344 1.135575 CAGTCCTTTCGCCTTGATTGC 60.136 52.381 0.00 0.00 0.00 3.56
3359 3457 3.306641 GGCCCAGTATTCTATGCTCTCAG 60.307 52.174 0.00 0.00 0.00 3.35
3393 3491 1.683011 CGAAGGTGAATCCAAGGCCAT 60.683 52.381 5.01 0.00 39.02 4.40
3394 3492 2.460669 GAAGGTGAATCCAAGGCCATT 58.539 47.619 5.01 0.00 39.02 3.16
3413 3519 0.960364 TTCCCGCAAGTCAATGCTCC 60.960 55.000 0.00 0.00 44.21 4.70
3418 3524 1.648467 GCAAGTCAATGCTCCCGTCC 61.648 60.000 0.00 0.00 43.06 4.79
3421 3527 4.467084 TCAATGCTCCCGTCCCGC 62.467 66.667 0.00 0.00 0.00 6.13
3514 3624 0.109319 CATTGTTTTCGCTTCCCGGG 60.109 55.000 16.85 16.85 37.59 5.73
3619 3745 5.630415 TCCTTGGCTGCTTATACAACTAT 57.370 39.130 0.00 0.00 0.00 2.12
3621 3747 6.759272 TCCTTGGCTGCTTATACAACTATAG 58.241 40.000 0.00 0.00 0.00 1.31
3623 3749 6.647067 CCTTGGCTGCTTATACAACTATAGAC 59.353 42.308 6.78 0.00 0.00 2.59
3624 3750 6.978674 TGGCTGCTTATACAACTATAGACT 57.021 37.500 6.78 0.00 0.00 3.24
3625 3751 8.473358 TTGGCTGCTTATACAACTATAGACTA 57.527 34.615 6.78 0.00 0.00 2.59
3627 3753 7.724506 TGGCTGCTTATACAACTATAGACTACT 59.275 37.037 6.78 0.00 0.00 2.57
3628 3754 9.228949 GGCTGCTTATACAACTATAGACTACTA 57.771 37.037 6.78 0.00 0.00 1.82
3669 3807 9.759473 AGTTTAATATAATCAATCATGGGAGGG 57.241 33.333 0.00 0.00 0.00 4.30
3771 3913 2.939022 GTGTGGTTGACGCTCAGC 59.061 61.111 0.00 0.00 31.83 4.26
3835 3977 2.418777 CGATCTGATCGCCAGCCA 59.581 61.111 24.97 0.00 46.55 4.75
3863 4014 1.515519 GCGTCTCGTGTTCGCCATA 60.516 57.895 14.69 0.00 43.41 2.74
3875 4026 0.466007 TCGCCATATGCATGCCTGTT 60.466 50.000 16.68 0.00 41.33 3.16
3879 4030 3.439825 CGCCATATGCATGCCTGTTATTA 59.560 43.478 16.68 0.00 41.33 0.98
3884 4035 7.388500 GCCATATGCATGCCTGTTATTATTTTT 59.612 33.333 16.68 0.00 40.77 1.94
3885 4036 8.928733 CCATATGCATGCCTGTTATTATTTTTC 58.071 33.333 16.68 0.00 0.00 2.29
3890 4045 8.748412 TGCATGCCTGTTATTATTTTTCTACTT 58.252 29.630 16.68 0.00 0.00 2.24
3912 4067 1.915614 CTCCATGTGGTTGCGACTGC 61.916 60.000 3.59 0.00 37.86 4.40
3949 4107 3.055144 GCTAGGGCTTTGCATTTGC 57.945 52.632 0.00 0.00 37.21 3.68
3950 4108 0.247185 GCTAGGGCTTTGCATTTGCA 59.753 50.000 0.05 0.05 41.64 4.08
3979 4137 2.238395 ACTGGGCTTCTTCTGAATCTCC 59.762 50.000 0.00 0.00 0.00 3.71
3982 4140 1.208293 GGCTTCTTCTGAATCTCCGGT 59.792 52.381 0.00 0.00 0.00 5.28
4012 4170 0.686789 TGCTCCGGTGATATCATGGG 59.313 55.000 20.66 18.11 0.00 4.00
4050 4213 2.196776 AGTTGCAGGCTGGCTGTT 59.803 55.556 28.70 12.19 34.04 3.16
4053 4216 2.195567 TTGCAGGCTGGCTGTTGTC 61.196 57.895 28.70 14.81 34.04 3.18
4172 4344 3.181967 GTGCGTGACCAGCTAGCG 61.182 66.667 9.55 4.28 35.28 4.26
4466 4639 2.411535 CGAGTACCACGCCATCCTA 58.588 57.895 0.00 0.00 0.00 2.94
4514 4687 4.147449 CGCCACGAGCCCATCTCA 62.147 66.667 0.00 0.00 41.98 3.27
4574 4747 2.331451 GCCGACAACTTTTGCGCT 59.669 55.556 9.73 0.00 0.00 5.92
4580 4753 2.026014 AACTTTTGCGCTGGCGTG 59.974 55.556 16.21 5.06 44.10 5.34
4673 4846 2.686106 GGCGGGGAGGACAAGGTA 60.686 66.667 0.00 0.00 0.00 3.08
4674 4847 2.295602 GGCGGGGAGGACAAGGTAA 61.296 63.158 0.00 0.00 0.00 2.85
4676 4849 1.905512 CGGGGAGGACAAGGTAAGG 59.094 63.158 0.00 0.00 0.00 2.69
4934 5107 7.909777 CGTAAGTACAGTACATCATACCTTG 57.090 40.000 13.37 0.00 0.00 3.61
4957 5130 4.885907 GCATCATTTCTCATTTCCTCTCCA 59.114 41.667 0.00 0.00 0.00 3.86
4958 5131 5.221009 GCATCATTTCTCATTTCCTCTCCAC 60.221 44.000 0.00 0.00 0.00 4.02
4959 5132 5.503634 TCATTTCTCATTTCCTCTCCACA 57.496 39.130 0.00 0.00 0.00 4.17
4960 5133 5.248640 TCATTTCTCATTTCCTCTCCACAC 58.751 41.667 0.00 0.00 0.00 3.82
4961 5134 4.705110 TTTCTCATTTCCTCTCCACACA 57.295 40.909 0.00 0.00 0.00 3.72
4962 5135 4.916041 TTCTCATTTCCTCTCCACACAT 57.084 40.909 0.00 0.00 0.00 3.21
4963 5136 4.212143 TCTCATTTCCTCTCCACACATG 57.788 45.455 0.00 0.00 0.00 3.21
5045 5222 8.117988 TCTGACACTTGTTGATTTTTACGTAAC 58.882 33.333 7.70 0.00 0.00 2.50
5078 5255 8.654230 CATCTGTGCATCTAACATTAACTAGT 57.346 34.615 0.00 0.00 0.00 2.57
5080 5257 9.751542 ATCTGTGCATCTAACATTAACTAGTAC 57.248 33.333 0.00 0.00 0.00 2.73
5117 5294 6.064717 AGCAATTAAACTGACAGAACTCCTT 58.935 36.000 10.08 0.00 0.00 3.36
5118 5295 6.016777 AGCAATTAAACTGACAGAACTCCTTG 60.017 38.462 10.08 6.74 0.00 3.61
5119 5296 5.948992 ATTAAACTGACAGAACTCCTTGC 57.051 39.130 10.08 0.00 0.00 4.01
5121 5298 3.281727 AACTGACAGAACTCCTTGCAA 57.718 42.857 10.08 0.00 0.00 4.08
5123 5300 1.876156 CTGACAGAACTCCTTGCAACC 59.124 52.381 0.00 0.00 0.00 3.77
5124 5301 1.490490 TGACAGAACTCCTTGCAACCT 59.510 47.619 0.00 0.00 0.00 3.50
5126 5303 3.135712 TGACAGAACTCCTTGCAACCTAA 59.864 43.478 0.00 0.00 0.00 2.69
5127 5304 4.134563 GACAGAACTCCTTGCAACCTAAA 58.865 43.478 0.00 0.00 0.00 1.85
5128 5305 3.883489 ACAGAACTCCTTGCAACCTAAAC 59.117 43.478 0.00 0.00 0.00 2.01
5130 5307 4.338118 CAGAACTCCTTGCAACCTAAACAA 59.662 41.667 0.00 0.00 0.00 2.83
5131 5308 5.010012 CAGAACTCCTTGCAACCTAAACAAT 59.990 40.000 0.00 0.00 0.00 2.71
5136 5314 3.056607 CCTTGCAACCTAAACAATGGAGG 60.057 47.826 0.00 0.00 36.36 4.30
5198 5376 3.387699 ACTCCTCTACCTCTCGTACTACC 59.612 52.174 0.00 0.00 0.00 3.18
5210 5388 2.158564 TCGTACTACCCCATGGAGTAGG 60.159 54.545 30.42 24.20 40.25 3.18
5229 5407 4.727507 AGGACTGTACTAGCATGAACTG 57.272 45.455 0.00 0.00 0.00 3.16
5306 5484 1.378778 AGGAGGAAGAGGACGACGG 60.379 63.158 0.00 0.00 0.00 4.79
5346 5524 6.759497 ATTATTGTTCTTGGCTACAGAACC 57.241 37.500 16.86 5.46 40.64 3.62
5353 5531 2.582978 GCTACAGAACCGGGGTCC 59.417 66.667 8.86 0.00 0.00 4.46
5383 5562 3.444029 GGGGTAGTAGTAGGGTTGACAA 58.556 50.000 0.00 0.00 0.00 3.18
5473 5686 1.727062 CCTATCTGCCCATGTCCTCT 58.273 55.000 0.00 0.00 0.00 3.69
5502 5716 0.469705 ATGCCCACCAAAGCTGTCAA 60.470 50.000 0.00 0.00 0.00 3.18
5546 5765 9.958180 TTCTATACTTTTCAAAGATCCATGACA 57.042 29.630 6.29 0.00 39.31 3.58
5562 5781 9.118300 GATCCATGACAAGTATCTTTTTCATCT 57.882 33.333 0.00 0.00 0.00 2.90
5607 5826 2.659428 GCTTGGCAATATCCTGGTTCT 58.341 47.619 0.00 0.00 0.00 3.01
5665 5884 5.560722 TCCCTTTTGATCTCAAGTACACA 57.439 39.130 0.00 0.00 37.15 3.72
5666 5885 5.305585 TCCCTTTTGATCTCAAGTACACAC 58.694 41.667 0.00 0.00 37.15 3.82
5696 5915 5.300752 TCTACTAGCATGATTGGCTAAAGC 58.699 41.667 0.00 0.00 42.80 3.51
5715 5934 8.061857 GCTAAAGCAAAACACTTTGAATTTACC 58.938 33.333 1.86 0.00 44.03 2.85
5716 5935 9.313118 CTAAAGCAAAACACTTTGAATTTACCT 57.687 29.630 1.86 0.00 44.03 3.08
5719 5938 8.642908 AGCAAAACACTTTGAATTTACCTAAC 57.357 30.769 1.86 0.00 44.03 2.34
5749 5981 5.931441 AGTTGAGACTATGCACAGTTTTC 57.069 39.130 0.00 1.21 33.32 2.29
5755 5988 5.865085 AGACTATGCACAGTTTTCCAGTTA 58.135 37.500 0.00 0.00 0.00 2.24
5761 5994 4.202461 TGCACAGTTTTCCAGTTATCTCCT 60.202 41.667 0.00 0.00 0.00 3.69
5813 6046 4.652679 TTTAAGACCTCCCTTTCCCTTC 57.347 45.455 0.00 0.00 0.00 3.46
5829 6062 4.670765 TCCCTTCGATAATACTACCTCCC 58.329 47.826 0.00 0.00 0.00 4.30
5831 6064 5.553162 TCCCTTCGATAATACTACCTCCCTA 59.447 44.000 0.00 0.00 0.00 3.53
5834 6067 6.150809 CCTTCGATAATACTACCTCCCTACAC 59.849 46.154 0.00 0.00 0.00 2.90
5847 6080 5.950549 ACCTCCCTACACTAATATATGACGG 59.049 44.000 0.00 0.00 0.00 4.79
5892 6125 4.381566 GCAAAAACGCCTTACATTAGTGTG 59.618 41.667 0.34 0.00 39.39 3.82
5901 6134 2.770164 ACATTAGTGTGCAGAGGGAC 57.230 50.000 0.00 0.00 37.14 4.46
5907 6140 5.854010 TTAGTGTGCAGAGGGACTAATAG 57.146 43.478 0.00 0.00 41.55 1.73
5948 6182 7.992180 AATTTAACACAGTGAAAGAAAGCAG 57.008 32.000 7.81 0.00 0.00 4.24
6081 6319 5.827568 AGTTGACAATTTAAATGCTTGCG 57.172 34.783 0.39 0.00 0.00 4.85
6144 6384 2.001361 GCTGGCTGATGCATGTCACC 62.001 60.000 2.46 0.23 41.91 4.02
6155 6395 2.613595 TGCATGTCACCGATATTGCTTC 59.386 45.455 0.00 0.00 0.00 3.86
6378 6618 1.597461 GCGGCTACTGACCCTTCTT 59.403 57.895 0.00 0.00 0.00 2.52
6635 6875 0.953471 GCCAACACACCGATACAGCA 60.953 55.000 0.00 0.00 0.00 4.41
6711 6957 5.542779 TCACAAAGCTAGAGGAAGAAGAAC 58.457 41.667 0.00 0.00 0.00 3.01
6712 6958 5.070446 TCACAAAGCTAGAGGAAGAAGAACA 59.930 40.000 0.00 0.00 0.00 3.18
6713 6959 5.760253 CACAAAGCTAGAGGAAGAAGAACAA 59.240 40.000 0.00 0.00 0.00 2.83
6714 6960 5.994668 ACAAAGCTAGAGGAAGAAGAACAAG 59.005 40.000 0.00 0.00 0.00 3.16
6715 6961 6.183361 ACAAAGCTAGAGGAAGAAGAACAAGA 60.183 38.462 0.00 0.00 0.00 3.02
6716 6962 6.426646 AAGCTAGAGGAAGAAGAACAAGAA 57.573 37.500 0.00 0.00 0.00 2.52
6717 6963 6.036577 AGCTAGAGGAAGAAGAACAAGAAG 57.963 41.667 0.00 0.00 0.00 2.85
6718 6964 5.777732 AGCTAGAGGAAGAAGAACAAGAAGA 59.222 40.000 0.00 0.00 0.00 2.87
6719 6965 6.268847 AGCTAGAGGAAGAAGAACAAGAAGAA 59.731 38.462 0.00 0.00 0.00 2.52
6734 6980 3.855858 AGAAGAAGATTTCAGGCGAGAC 58.144 45.455 0.00 0.00 0.00 3.36
6742 6990 0.895530 TTCAGGCGAGACTTCGGATT 59.104 50.000 0.00 0.00 46.76 3.01
6750 6998 4.156190 GGCGAGACTTCGGATTATCATAGA 59.844 45.833 0.00 0.00 46.76 1.98
6942 7195 5.875359 GGGTATTGACTTAAACTCTGGTGAG 59.125 44.000 0.00 0.00 45.43 3.51
6979 7232 6.860790 CCCCTAGGGCTTTGTTTTATTTTA 57.139 37.500 23.84 0.00 35.35 1.52
6981 7234 8.541899 CCCCTAGGGCTTTGTTTTATTTTATA 57.458 34.615 23.84 0.00 35.35 0.98
6982 7235 9.154632 CCCCTAGGGCTTTGTTTTATTTTATAT 57.845 33.333 23.84 0.00 35.35 0.86
7021 7275 8.405531 TCTAGTGCTTTGGTTTATTAATGCATC 58.594 33.333 0.00 0.00 38.60 3.91
7157 7411 8.058235 TGAAGATGTTGGAATGGGTTCATATAA 58.942 33.333 0.00 0.00 36.01 0.98
7230 7484 9.528018 TGAAAACCAAAATACATCTTCTTGAAC 57.472 29.630 0.00 0.00 0.00 3.18
7231 7485 9.750125 GAAAACCAAAATACATCTTCTTGAACT 57.250 29.630 0.00 0.00 0.00 3.01
7264 7518 9.971922 ACAATATTTTGATATAGAAAAGGCAGC 57.028 29.630 2.69 0.00 36.64 5.25
7267 7521 7.886629 ATTTTGATATAGAAAAGGCAGCTCA 57.113 32.000 0.00 0.00 0.00 4.26
7268 7522 7.701539 TTTTGATATAGAAAAGGCAGCTCAA 57.298 32.000 0.00 0.00 0.00 3.02
7269 7523 7.701539 TTTGATATAGAAAAGGCAGCTCAAA 57.298 32.000 0.00 0.00 0.00 2.69
7270 7524 6.932356 TGATATAGAAAAGGCAGCTCAAAG 57.068 37.500 0.00 0.00 0.00 2.77
7271 7525 5.297776 TGATATAGAAAAGGCAGCTCAAAGC 59.702 40.000 0.00 0.00 42.84 3.51
7295 7549 4.297299 CACCTATGCATGGCTTAACTTG 57.703 45.455 10.16 0.00 0.00 3.16
7296 7550 3.696051 CACCTATGCATGGCTTAACTTGT 59.304 43.478 10.16 0.00 0.00 3.16
7358 10129 9.077885 AGACATTTTAAATGGACTACAACATGT 57.922 29.630 20.00 0.00 0.00 3.21
7363 10134 9.521841 TTTTAAATGGACTACAACATGTGGATA 57.478 29.630 7.39 0.00 32.79 2.59
7418 10189 7.921214 CACTCATTTTACTCCGTATGTAGTCAT 59.079 37.037 0.00 0.00 38.00 3.06
7419 10190 8.136165 ACTCATTTTACTCCGTATGTAGTCATC 58.864 37.037 0.00 0.00 35.70 2.92
7420 10191 8.002984 TCATTTTACTCCGTATGTAGTCATCA 57.997 34.615 0.00 0.00 35.70 3.07
7465 10236 8.993424 ACTTATATTTGTGAACAGAGGGAGTAT 58.007 33.333 0.00 0.00 0.00 2.12
7466 10237 9.838339 CTTATATTTGTGAACAGAGGGAGTATT 57.162 33.333 0.00 0.00 0.00 1.89
7469 10240 9.838339 ATATTTGTGAACAGAGGGAGTATTTAG 57.162 33.333 0.00 0.00 0.00 1.85
7470 10241 6.681729 TTGTGAACAGAGGGAGTATTTAGT 57.318 37.500 0.00 0.00 0.00 2.24
7471 10242 7.786046 TTGTGAACAGAGGGAGTATTTAGTA 57.214 36.000 0.00 0.00 0.00 1.82
7472 10243 7.406031 TGTGAACAGAGGGAGTATTTAGTAG 57.594 40.000 0.00 0.00 0.00 2.57
7473 10244 6.127423 TGTGAACAGAGGGAGTATTTAGTAGC 60.127 42.308 0.00 0.00 0.00 3.58
7474 10245 5.955959 TGAACAGAGGGAGTATTTAGTAGCA 59.044 40.000 0.00 0.00 0.00 3.49
7475 10246 6.611642 TGAACAGAGGGAGTATTTAGTAGCAT 59.388 38.462 0.00 0.00 0.00 3.79
7476 10247 7.783119 TGAACAGAGGGAGTATTTAGTAGCATA 59.217 37.037 0.00 0.00 0.00 3.14
7477 10248 7.768807 ACAGAGGGAGTATTTAGTAGCATAG 57.231 40.000 0.00 0.00 0.00 2.23
7478 10249 6.722129 ACAGAGGGAGTATTTAGTAGCATAGG 59.278 42.308 0.00 0.00 0.00 2.57
7479 10250 6.153680 CAGAGGGAGTATTTAGTAGCATAGGG 59.846 46.154 0.00 0.00 0.00 3.53
7480 10251 6.046881 AGAGGGAGTATTTAGTAGCATAGGGA 59.953 42.308 0.00 0.00 0.00 4.20
7481 10252 6.257586 AGGGAGTATTTAGTAGCATAGGGAG 58.742 44.000 0.00 0.00 0.00 4.30
7482 10253 5.105269 GGGAGTATTTAGTAGCATAGGGAGC 60.105 48.000 0.00 0.00 0.00 4.70
7483 10254 5.480772 GGAGTATTTAGTAGCATAGGGAGCA 59.519 44.000 0.00 0.00 0.00 4.26
7484 10255 6.350612 GGAGTATTTAGTAGCATAGGGAGCAG 60.351 46.154 0.00 0.00 0.00 4.24
7485 10256 4.899352 ATTTAGTAGCATAGGGAGCAGG 57.101 45.455 0.00 0.00 0.00 4.85
7486 10257 3.330126 TTAGTAGCATAGGGAGCAGGT 57.670 47.619 0.00 0.00 0.00 4.00
7487 10258 1.710816 AGTAGCATAGGGAGCAGGTC 58.289 55.000 0.00 0.00 0.00 3.85
7488 10259 1.062886 AGTAGCATAGGGAGCAGGTCA 60.063 52.381 1.20 0.00 0.00 4.02
7489 10260 1.762957 GTAGCATAGGGAGCAGGTCAA 59.237 52.381 1.20 0.00 0.00 3.18
7490 10261 1.289160 AGCATAGGGAGCAGGTCAAA 58.711 50.000 1.20 0.00 0.00 2.69
7491 10262 1.211457 AGCATAGGGAGCAGGTCAAAG 59.789 52.381 1.20 0.00 0.00 2.77
7492 10263 1.673168 CATAGGGAGCAGGTCAAAGC 58.327 55.000 1.20 0.00 0.00 3.51
7493 10264 1.065199 CATAGGGAGCAGGTCAAAGCA 60.065 52.381 1.20 0.00 0.00 3.91
7494 10265 0.615331 TAGGGAGCAGGTCAAAGCAG 59.385 55.000 1.20 0.00 0.00 4.24
7495 10266 1.073897 GGGAGCAGGTCAAAGCAGT 59.926 57.895 1.20 0.00 0.00 4.40
7496 10267 0.324943 GGGAGCAGGTCAAAGCAGTA 59.675 55.000 1.20 0.00 0.00 2.74
7497 10268 1.443802 GGAGCAGGTCAAAGCAGTAC 58.556 55.000 1.20 0.00 0.00 2.73
7498 10269 1.270839 GGAGCAGGTCAAAGCAGTACA 60.271 52.381 1.20 0.00 0.00 2.90
7499 10270 2.616510 GGAGCAGGTCAAAGCAGTACAT 60.617 50.000 1.20 0.00 0.00 2.29
7500 10271 3.077359 GAGCAGGTCAAAGCAGTACATT 58.923 45.455 0.00 0.00 0.00 2.71
7501 10272 3.490348 AGCAGGTCAAAGCAGTACATTT 58.510 40.909 0.00 0.00 0.00 2.32
7502 10273 3.503748 AGCAGGTCAAAGCAGTACATTTC 59.496 43.478 0.00 0.00 0.00 2.17
7503 10274 3.503748 GCAGGTCAAAGCAGTACATTTCT 59.496 43.478 0.00 0.00 0.00 2.52
7504 10275 4.022849 GCAGGTCAAAGCAGTACATTTCTT 60.023 41.667 0.00 0.00 0.00 2.52
7505 10276 5.181245 GCAGGTCAAAGCAGTACATTTCTTA 59.819 40.000 0.00 0.00 0.00 2.10
7506 10277 6.127897 GCAGGTCAAAGCAGTACATTTCTTAT 60.128 38.462 0.00 0.00 0.00 1.73
7507 10278 7.575720 GCAGGTCAAAGCAGTACATTTCTTATT 60.576 37.037 0.00 0.00 0.00 1.40
7508 10279 7.965107 CAGGTCAAAGCAGTACATTTCTTATTC 59.035 37.037 0.00 0.00 0.00 1.75
7509 10280 7.665559 AGGTCAAAGCAGTACATTTCTTATTCA 59.334 33.333 0.00 0.00 0.00 2.57
7510 10281 7.965107 GGTCAAAGCAGTACATTTCTTATTCAG 59.035 37.037 0.00 0.00 0.00 3.02
7511 10282 7.965107 GTCAAAGCAGTACATTTCTTATTCAGG 59.035 37.037 0.00 0.00 0.00 3.86
7512 10283 7.121168 TCAAAGCAGTACATTTCTTATTCAGGG 59.879 37.037 0.00 0.00 0.00 4.45
7513 10284 6.313519 AGCAGTACATTTCTTATTCAGGGA 57.686 37.500 0.00 0.00 0.00 4.20
7514 10285 6.904626 AGCAGTACATTTCTTATTCAGGGAT 58.095 36.000 0.00 0.00 0.00 3.85
7515 10286 8.034313 AGCAGTACATTTCTTATTCAGGGATA 57.966 34.615 0.00 0.00 0.00 2.59
7516 10287 8.153550 AGCAGTACATTTCTTATTCAGGGATAG 58.846 37.037 0.00 0.00 0.00 2.08
7517 10288 7.389053 GCAGTACATTTCTTATTCAGGGATAGG 59.611 40.741 0.00 0.00 0.00 2.57
7518 10289 8.432805 CAGTACATTTCTTATTCAGGGATAGGT 58.567 37.037 0.00 0.00 0.00 3.08
7519 10290 8.432805 AGTACATTTCTTATTCAGGGATAGGTG 58.567 37.037 0.00 0.00 0.00 4.00
7520 10291 7.451731 ACATTTCTTATTCAGGGATAGGTGA 57.548 36.000 0.00 0.00 0.00 4.02
7521 10292 7.872138 ACATTTCTTATTCAGGGATAGGTGAA 58.128 34.615 0.00 0.00 37.10 3.18
7522 10293 8.506083 ACATTTCTTATTCAGGGATAGGTGAAT 58.494 33.333 3.29 3.29 44.00 2.57
7523 10294 8.790718 CATTTCTTATTCAGGGATAGGTGAATG 58.209 37.037 7.64 0.00 42.19 2.67
7524 10295 7.690454 TTCTTATTCAGGGATAGGTGAATGA 57.310 36.000 7.64 0.00 42.19 2.57
7525 10296 7.308450 TCTTATTCAGGGATAGGTGAATGAG 57.692 40.000 9.44 9.44 43.28 2.90
7526 10297 3.845781 TTCAGGGATAGGTGAATGAGC 57.154 47.619 0.00 0.00 0.00 4.26
7527 10298 3.051940 TCAGGGATAGGTGAATGAGCT 57.948 47.619 0.00 0.00 36.09 4.09
7528 10299 3.387962 TCAGGGATAGGTGAATGAGCTT 58.612 45.455 0.00 0.00 33.31 3.74
7529 10300 4.556697 TCAGGGATAGGTGAATGAGCTTA 58.443 43.478 0.00 0.00 33.31 3.09
7530 10301 4.968719 TCAGGGATAGGTGAATGAGCTTAA 59.031 41.667 0.00 0.00 33.31 1.85
7531 10302 5.608437 TCAGGGATAGGTGAATGAGCTTAAT 59.392 40.000 0.00 0.00 33.31 1.40
7532 10303 6.101734 TCAGGGATAGGTGAATGAGCTTAATT 59.898 38.462 0.00 0.00 33.31 1.40
7533 10304 6.774656 CAGGGATAGGTGAATGAGCTTAATTT 59.225 38.462 0.00 0.00 33.31 1.82
7534 10305 6.774656 AGGGATAGGTGAATGAGCTTAATTTG 59.225 38.462 0.00 0.00 33.31 2.32
7535 10306 6.547510 GGGATAGGTGAATGAGCTTAATTTGT 59.452 38.462 0.00 0.00 33.31 2.83
7536 10307 7.420800 GGATAGGTGAATGAGCTTAATTTGTG 58.579 38.462 0.00 0.00 33.31 3.33
7537 10308 7.283127 GGATAGGTGAATGAGCTTAATTTGTGA 59.717 37.037 0.00 0.00 33.31 3.58
7538 10309 6.899393 AGGTGAATGAGCTTAATTTGTGAA 57.101 33.333 0.00 0.00 0.00 3.18
7539 10310 7.288810 AGGTGAATGAGCTTAATTTGTGAAA 57.711 32.000 0.00 0.00 0.00 2.69
7540 10311 7.725251 AGGTGAATGAGCTTAATTTGTGAAAA 58.275 30.769 0.00 0.00 0.00 2.29
7541 10312 8.203485 AGGTGAATGAGCTTAATTTGTGAAAAA 58.797 29.630 0.00 0.00 0.00 1.94
7568 10339 9.471084 AAAATGTTAAGTAGGTTTTACATGTGC 57.529 29.630 9.11 0.00 0.00 4.57
7569 10340 6.563222 TGTTAAGTAGGTTTTACATGTGCC 57.437 37.500 9.11 5.58 0.00 5.01
7570 10341 5.179742 TGTTAAGTAGGTTTTACATGTGCCG 59.820 40.000 9.11 0.00 0.00 5.69
7571 10342 2.706890 AGTAGGTTTTACATGTGCCGG 58.293 47.619 9.11 0.00 0.00 6.13
7572 10343 2.039348 AGTAGGTTTTACATGTGCCGGT 59.961 45.455 9.11 0.00 0.00 5.28
7573 10344 1.989706 AGGTTTTACATGTGCCGGTT 58.010 45.000 9.11 0.00 0.00 4.44
7574 10345 3.143211 AGGTTTTACATGTGCCGGTTA 57.857 42.857 9.11 0.00 0.00 2.85
7575 10346 3.488363 AGGTTTTACATGTGCCGGTTAA 58.512 40.909 9.11 0.00 0.00 2.01
7576 10347 3.890147 AGGTTTTACATGTGCCGGTTAAA 59.110 39.130 9.11 0.00 0.00 1.52
7577 10348 4.341520 AGGTTTTACATGTGCCGGTTAAAA 59.658 37.500 9.11 2.42 0.00 1.52
7578 10349 4.682401 GGTTTTACATGTGCCGGTTAAAAG 59.318 41.667 9.11 0.00 0.00 2.27
7579 10350 3.562567 TTACATGTGCCGGTTAAAAGC 57.437 42.857 9.11 0.00 0.00 3.51
7580 10351 1.616159 ACATGTGCCGGTTAAAAGCT 58.384 45.000 1.90 0.00 0.00 3.74
7581 10352 2.785562 ACATGTGCCGGTTAAAAGCTA 58.214 42.857 1.90 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 4.624364 TGTCAGCCAGCCGTGGTG 62.624 66.667 0.00 0.00 46.96 4.17
11 12 4.320456 CTGTCAGCCAGCCGTGGT 62.320 66.667 0.00 0.00 46.96 4.16
18 19 4.426112 TCGCTCGCTGTCAGCCAG 62.426 66.667 19.14 16.74 44.53 4.85
19 20 4.426112 CTCGCTCGCTGTCAGCCA 62.426 66.667 19.14 5.52 38.18 4.75
76 82 7.251195 TCTTTTTAGGGAGGAGTTAGTAGGAA 58.749 38.462 0.00 0.00 0.00 3.36
78 84 7.202020 GGATCTTTTTAGGGAGGAGTTAGTAGG 60.202 44.444 0.00 0.00 0.00 3.18
92 111 1.062587 CGCAGCACGGATCTTTTTAGG 59.937 52.381 0.00 0.00 38.44 2.69
120 139 2.045926 AAGGGATCTGGCACGCAC 60.046 61.111 0.00 0.00 0.00 5.34
121 140 2.046023 CAAGGGATCTGGCACGCA 60.046 61.111 0.00 0.00 0.00 5.24
123 142 2.825836 GGCAAGGGATCTGGCACG 60.826 66.667 2.54 0.00 41.73 5.34
124 143 1.751927 CAGGCAAGGGATCTGGCAC 60.752 63.158 9.27 0.00 41.73 5.01
125 144 2.679092 CAGGCAAGGGATCTGGCA 59.321 61.111 9.27 0.00 41.73 4.92
126 145 2.832201 GCAGGCAAGGGATCTGGC 60.832 66.667 0.00 0.00 39.23 4.85
249 268 1.227380 GACTCGCACATGGGGCTAG 60.227 63.158 0.00 4.36 0.00 3.42
250 269 1.960040 CTGACTCGCACATGGGGCTA 61.960 60.000 0.00 0.00 0.00 3.93
257 276 3.321648 TGGGGCTGACTCGCACAT 61.322 61.111 0.00 0.00 34.16 3.21
289 308 0.879090 AGAAAATGGCGACGGAAACC 59.121 50.000 0.00 0.00 0.00 3.27
328 347 4.288670 ACAAATATCATCGTCGTCTCGT 57.711 40.909 0.00 0.00 0.00 4.18
329 348 5.229260 TCAAACAAATATCATCGTCGTCTCG 59.771 40.000 0.00 0.00 0.00 4.04
330 349 6.569228 TCAAACAAATATCATCGTCGTCTC 57.431 37.500 0.00 0.00 0.00 3.36
331 350 5.005779 GCTCAAACAAATATCATCGTCGTCT 59.994 40.000 0.00 0.00 0.00 4.18
332 351 5.005779 AGCTCAAACAAATATCATCGTCGTC 59.994 40.000 0.00 0.00 0.00 4.20
337 356 6.841443 AGAGAGCTCAAACAAATATCATCG 57.159 37.500 17.77 0.00 0.00 3.84
340 359 8.846943 TGTTAAGAGAGCTCAAACAAATATCA 57.153 30.769 17.77 2.23 35.92 2.15
341 360 9.155975 TCTGTTAAGAGAGCTCAAACAAATATC 57.844 33.333 17.77 0.76 37.32 1.63
342 361 9.507329 TTCTGTTAAGAGAGCTCAAACAAATAT 57.493 29.630 17.77 0.00 37.32 1.28
343 362 8.774586 GTTCTGTTAAGAGAGCTCAAACAAATA 58.225 33.333 17.77 6.53 37.32 1.40
344 363 7.255277 GGTTCTGTTAAGAGAGCTCAAACAAAT 60.255 37.037 17.77 0.00 37.32 2.32
345 364 6.038271 GGTTCTGTTAAGAGAGCTCAAACAAA 59.962 38.462 17.77 12.93 37.32 2.83
346 365 5.527582 GGTTCTGTTAAGAGAGCTCAAACAA 59.472 40.000 17.77 1.51 37.32 2.83
347 366 5.057149 GGTTCTGTTAAGAGAGCTCAAACA 58.943 41.667 17.77 17.57 36.75 2.83
348 367 4.150804 CGGTTCTGTTAAGAGAGCTCAAAC 59.849 45.833 17.77 14.14 32.79 2.93
349 368 4.202223 ACGGTTCTGTTAAGAGAGCTCAAA 60.202 41.667 17.77 1.52 32.79 2.69
350 369 3.321111 ACGGTTCTGTTAAGAGAGCTCAA 59.679 43.478 17.77 0.00 32.79 3.02
366 385 1.062148 GGCGAGCAGATAAAACGGTTC 59.938 52.381 0.00 0.00 0.00 3.62
424 443 2.224281 TGGATATAACGAAGCCAGGCAG 60.224 50.000 15.80 7.14 0.00 4.85
425 444 1.765904 TGGATATAACGAAGCCAGGCA 59.234 47.619 15.80 0.00 0.00 4.75
426 445 2.543777 TGGATATAACGAAGCCAGGC 57.456 50.000 1.84 1.84 0.00 4.85
473 502 0.719015 AGTGGGAGATGGGAGGAGAA 59.281 55.000 0.00 0.00 0.00 2.87
488 520 1.687996 GGAAGAGGAGGAGGAGAGTGG 60.688 61.905 0.00 0.00 0.00 4.00
502 534 2.165437 CGTGGAGGAAGAAGAGGAAGAG 59.835 54.545 0.00 0.00 0.00 2.85
503 535 2.171840 CGTGGAGGAAGAAGAGGAAGA 58.828 52.381 0.00 0.00 0.00 2.87
504 536 2.165437 CTCGTGGAGGAAGAAGAGGAAG 59.835 54.545 0.00 0.00 0.00 3.46
505 537 2.171840 CTCGTGGAGGAAGAAGAGGAA 58.828 52.381 0.00 0.00 0.00 3.36
562 596 5.618561 AGCGAACGAATTCAAACTGAATAC 58.381 37.500 6.22 0.00 45.57 1.89
572 606 0.706184 CGAACGAGCGAACGAATTCA 59.294 50.000 6.22 0.00 34.14 2.57
573 607 0.706729 ACGAACGAGCGAACGAATTC 59.293 50.000 16.11 0.00 37.03 2.17
575 609 1.393597 CGACGAACGAGCGAACGAAT 61.394 55.000 16.11 0.00 45.77 3.34
584 623 3.607987 GCGATGGCGACGAACGAG 61.608 66.667 0.00 0.00 45.77 4.18
631 670 2.071372 TCCCGACCCCAGAGATACTAT 58.929 52.381 0.00 0.00 0.00 2.12
641 680 2.609610 CCTTCCTTCCCGACCCCA 60.610 66.667 0.00 0.00 0.00 4.96
651 690 0.836400 TCTGACTTCGCCCCTTCCTT 60.836 55.000 0.00 0.00 0.00 3.36
662 701 0.514691 CCAACAGCGCTTCTGACTTC 59.485 55.000 7.50 0.00 45.72 3.01
671 710 1.546961 AGTAGTCTACCAACAGCGCT 58.453 50.000 2.64 2.64 0.00 5.92
680 719 3.819902 CGTGGAATCCCTAGTAGTCTACC 59.180 52.174 6.38 0.00 0.00 3.18
761 800 0.700564 AGGGGCTATACATGGCATGG 59.299 55.000 29.49 13.93 35.81 3.66
779 818 4.037690 GCGTGCATTAAAATAGCAGGAAG 58.962 43.478 16.60 6.11 44.34 3.46
799 838 1.443828 GAAAGAGGAGGGCTAGGCG 59.556 63.158 10.58 0.00 0.00 5.52
891 933 2.760374 GAGAATTGATCCTGCTACCCG 58.240 52.381 0.00 0.00 0.00 5.28
919 961 2.478709 CGACTGACTGAAATCTCTCCCG 60.479 54.545 0.00 0.00 0.00 5.14
973 1021 1.611673 CCCCAAGCGACAGACAAAGAT 60.612 52.381 0.00 0.00 0.00 2.40
987 1035 1.115467 AGCTCATCTACGACCCCAAG 58.885 55.000 0.00 0.00 0.00 3.61
991 1039 0.030908 CCGAAGCTCATCTACGACCC 59.969 60.000 0.00 0.00 0.00 4.46
1475 1524 4.368808 CGCGGGTTGCTGTTGTCG 62.369 66.667 0.00 0.00 43.27 4.35
1606 1658 2.161012 ATGAATCAGTCAAGCACTTGCG 59.839 45.455 5.49 0.00 41.59 4.85
1607 1659 3.844577 ATGAATCAGTCAAGCACTTGC 57.155 42.857 5.49 0.00 40.50 4.01
1608 1660 5.404366 CCAAAATGAATCAGTCAAGCACTTG 59.596 40.000 3.94 3.94 40.50 3.16
1609 1661 5.535333 CCAAAATGAATCAGTCAAGCACTT 58.465 37.500 0.00 0.00 40.50 3.16
1610 1662 4.560108 GCCAAAATGAATCAGTCAAGCACT 60.560 41.667 0.00 0.00 40.50 4.40
1611 1663 3.676646 GCCAAAATGAATCAGTCAAGCAC 59.323 43.478 0.00 0.00 40.50 4.40
1641 1693 0.890996 GGTGTGGGCACTCCTTGAAG 60.891 60.000 0.00 0.00 44.65 3.02
1656 1708 2.915659 TGCTTCTCGTCGGGGTGT 60.916 61.111 0.00 0.00 0.00 4.16
1761 1813 5.923204 AGAAGATTGTTCTGACTGACAGTT 58.077 37.500 10.01 0.00 45.86 3.16
1865 1940 1.152777 CTGCAACCAACCCACAGGA 60.153 57.895 0.00 0.00 36.73 3.86
1866 1941 1.152777 TCTGCAACCAACCCACAGG 60.153 57.895 0.00 0.00 40.04 4.00
1867 1942 1.785041 CGTCTGCAACCAACCCACAG 61.785 60.000 0.00 0.00 0.00 3.66
1868 1943 1.821759 CGTCTGCAACCAACCCACA 60.822 57.895 0.00 0.00 0.00 4.17
1869 1944 3.030652 CGTCTGCAACCAACCCAC 58.969 61.111 0.00 0.00 0.00 4.61
2150 2225 2.837291 CCGGAGCAGAGGGAGGAG 60.837 72.222 0.00 0.00 0.00 3.69
2414 2489 2.050144 GTCTCCAGCCCAATATCCAGA 58.950 52.381 0.00 0.00 0.00 3.86
2615 2690 4.092091 CACCGATTAGCTCTTGTGTTTCTC 59.908 45.833 0.00 0.00 0.00 2.87
2801 2887 1.800032 CGAGAGAGCGAGCTCAAGT 59.200 57.895 24.70 10.16 44.99 3.16
2802 2888 1.586042 GCGAGAGAGCGAGCTCAAG 60.586 63.158 24.70 14.05 44.99 3.02
2948 3037 1.673337 ACCGAGACGTCCACGATGA 60.673 57.895 26.36 0.00 43.02 2.92
2961 3050 3.966026 GAGAACGCCGTCCACCGAG 62.966 68.421 0.00 0.00 39.56 4.63
3106 3195 2.592308 GTGGGTGGATGGGAGAGC 59.408 66.667 0.00 0.00 0.00 4.09
3152 3246 2.282251 AGCAGGACGAGTGGACGA 60.282 61.111 0.00 0.00 37.03 4.20
3153 3247 2.179517 GAGCAGGACGAGTGGACG 59.820 66.667 0.00 0.00 39.31 4.79
3154 3248 2.574399 GGAGCAGGACGAGTGGAC 59.426 66.667 0.00 0.00 0.00 4.02
3155 3249 2.680352 GGGAGCAGGACGAGTGGA 60.680 66.667 0.00 0.00 0.00 4.02
3156 3250 2.681778 AGGGAGCAGGACGAGTGG 60.682 66.667 0.00 0.00 0.00 4.00
3157 3251 2.888863 GAGGGAGCAGGACGAGTG 59.111 66.667 0.00 0.00 0.00 3.51
3158 3252 2.752238 CGAGGGAGCAGGACGAGT 60.752 66.667 0.00 0.00 0.00 4.18
3159 3253 3.522731 CCGAGGGAGCAGGACGAG 61.523 72.222 0.00 0.00 0.00 4.18
3203 3297 4.181010 CATGGGCTGGCGGTAGCT 62.181 66.667 0.00 0.00 43.22 3.32
3206 3300 2.270850 GTTCATGGGCTGGCGGTA 59.729 61.111 0.00 0.00 0.00 4.02
3222 3316 0.389948 GCGAAAGGACTGATCGTGGT 60.390 55.000 8.80 0.00 38.75 4.16
3226 3320 1.002366 CAAGGCGAAAGGACTGATCG 58.998 55.000 0.00 4.10 39.47 3.69
3359 3457 0.109226 CCTTCGTCCACGTCCTTCTC 60.109 60.000 0.00 0.00 40.80 2.87
3514 3624 4.550639 CGAAACAGTTGAAAATTGCTTGCC 60.551 41.667 0.00 0.00 36.99 4.52
3566 3692 0.309302 CTGGATCTGTCGACTAGCCG 59.691 60.000 17.92 9.50 0.00 5.52
3619 3745 7.398618 ACTGGACTAGTGTAGTGTAGTAGTCTA 59.601 40.741 0.00 10.97 44.68 2.59
3621 3747 6.405538 ACTGGACTAGTGTAGTGTAGTAGTC 58.594 44.000 0.00 10.17 44.61 2.59
3623 3749 7.684937 AAACTGGACTAGTGTAGTGTAGTAG 57.315 40.000 0.00 0.00 40.26 2.57
3624 3750 9.745018 ATTAAACTGGACTAGTGTAGTGTAGTA 57.255 33.333 0.00 0.00 40.26 1.82
3625 3751 8.647256 ATTAAACTGGACTAGTGTAGTGTAGT 57.353 34.615 0.00 0.00 40.26 2.73
3669 3807 5.278660 GGATCATGCACAATAAGGGATGAAC 60.279 44.000 0.00 0.00 43.53 3.18
3761 3903 1.301716 GGTTTGGAGCTGAGCGTCA 60.302 57.895 0.00 0.00 0.00 4.35
3771 3913 5.844004 ACGTAGATATGCTTAGGTTTGGAG 58.156 41.667 0.00 0.00 0.00 3.86
3835 3977 2.176055 CGAGACGCGCAGTACAGT 59.824 61.111 5.73 0.00 0.00 3.55
3863 4014 8.917088 AGTAGAAAAATAATAACAGGCATGCAT 58.083 29.630 21.36 10.32 0.00 3.96
3879 4030 8.960591 CAACCACATGGAGATAAGTAGAAAAAT 58.039 33.333 4.53 0.00 38.94 1.82
3884 4035 4.441495 CGCAACCACATGGAGATAAGTAGA 60.441 45.833 4.53 0.00 38.94 2.59
3885 4036 3.804325 CGCAACCACATGGAGATAAGTAG 59.196 47.826 4.53 0.00 38.94 2.57
3890 4045 1.831106 AGTCGCAACCACATGGAGATA 59.169 47.619 4.53 0.00 38.94 1.98
3912 4067 0.110509 CTAAACACACTGCGCTGCTG 60.111 55.000 14.80 13.53 0.00 4.41
3950 4108 0.846693 AAGAAGCCCAGTTGACCACT 59.153 50.000 0.00 0.00 35.35 4.00
3964 4122 2.159028 GGGACCGGAGATTCAGAAGAAG 60.159 54.545 9.46 0.00 37.14 2.85
3982 4140 2.912542 CGGAGCATAGCGGAGGGA 60.913 66.667 0.00 0.00 0.00 4.20
3989 4147 3.193263 CATGATATCACCGGAGCATAGC 58.807 50.000 9.46 4.36 0.00 2.97
4012 4170 1.651138 GCATGCTACGTATCTGATCGC 59.349 52.381 11.37 0.00 0.00 4.58
4053 4216 4.111016 TAGACACGGCCACGAGCG 62.111 66.667 2.24 0.00 45.17 5.03
4266 4438 4.767255 CCACGGGCAGCCTCTCAC 62.767 72.222 12.43 0.00 0.00 3.51
4466 4639 4.740822 GGGTGCGGGTTGGAGCAT 62.741 66.667 0.00 0.00 45.69 3.79
4673 4846 1.229359 CTGCCTGGCCATCATCCTT 59.771 57.895 17.53 0.00 0.00 3.36
4674 4847 1.695239 TCTGCCTGGCCATCATCCT 60.695 57.895 17.53 0.00 0.00 3.24
4676 4849 1.897615 GCTCTGCCTGGCCATCATC 60.898 63.158 17.53 0.00 0.00 2.92
4934 5107 4.885907 TGGAGAGGAAATGAGAAATGATGC 59.114 41.667 0.00 0.00 0.00 3.91
4957 5130 3.326006 AGGAACTGAGATGTGTCATGTGT 59.674 43.478 0.00 0.00 37.18 3.72
4958 5131 3.935315 AGGAACTGAGATGTGTCATGTG 58.065 45.455 0.00 0.00 37.18 3.21
4959 5132 4.285517 AGAAGGAACTGAGATGTGTCATGT 59.714 41.667 0.00 0.00 40.86 3.21
4960 5133 4.630505 CAGAAGGAACTGAGATGTGTCATG 59.369 45.833 0.00 0.00 40.86 3.07
4961 5134 4.529769 TCAGAAGGAACTGAGATGTGTCAT 59.470 41.667 0.00 0.00 41.21 3.06
4962 5135 3.897505 TCAGAAGGAACTGAGATGTGTCA 59.102 43.478 0.00 0.00 41.21 3.58
4963 5136 4.527509 TCAGAAGGAACTGAGATGTGTC 57.472 45.455 0.00 0.00 41.21 3.67
5109 5286 4.911514 TTGTTTAGGTTGCAAGGAGTTC 57.088 40.909 0.00 0.00 0.00 3.01
5117 5294 2.109128 TCCCTCCATTGTTTAGGTTGCA 59.891 45.455 0.00 0.00 0.00 4.08
5118 5295 2.755103 CTCCCTCCATTGTTTAGGTTGC 59.245 50.000 0.00 0.00 0.00 4.17
5119 5296 4.301072 TCTCCCTCCATTGTTTAGGTTG 57.699 45.455 0.00 0.00 0.00 3.77
5121 5298 5.289510 ACTATCTCCCTCCATTGTTTAGGT 58.710 41.667 0.00 0.00 0.00 3.08
5123 5300 9.277783 CATTAACTATCTCCCTCCATTGTTTAG 57.722 37.037 0.00 0.00 0.00 1.85
5124 5301 8.998814 TCATTAACTATCTCCCTCCATTGTTTA 58.001 33.333 0.00 0.00 0.00 2.01
5126 5303 7.451731 TCATTAACTATCTCCCTCCATTGTT 57.548 36.000 0.00 0.00 0.00 2.83
5127 5304 7.293299 TCATCATTAACTATCTCCCTCCATTGT 59.707 37.037 0.00 0.00 0.00 2.71
5128 5305 7.683578 TCATCATTAACTATCTCCCTCCATTG 58.316 38.462 0.00 0.00 0.00 2.82
5130 5307 7.878621 TTCATCATTAACTATCTCCCTCCAT 57.121 36.000 0.00 0.00 0.00 3.41
5131 5308 7.878621 ATTCATCATTAACTATCTCCCTCCA 57.121 36.000 0.00 0.00 0.00 3.86
5198 5376 3.033659 AGTACAGTCCTACTCCATGGG 57.966 52.381 13.02 5.22 0.00 4.00
5210 5388 3.190874 GCCAGTTCATGCTAGTACAGTC 58.809 50.000 0.00 0.00 0.00 3.51
5229 5407 2.218953 CATGAAACCTGCATCATGCC 57.781 50.000 13.52 0.00 44.40 4.40
5306 5484 9.133627 GAACAATAATTTCTTGGAAGCTTTCTC 57.866 33.333 6.25 0.00 0.00 2.87
5465 5678 2.298610 CATGCATGCAAGAGAGGACAT 58.701 47.619 26.68 0.00 0.00 3.06
5487 5700 3.676873 GCCAATATTGACAGCTTTGGTGG 60.677 47.826 17.23 0.00 39.21 4.61
5562 5781 7.115663 GCCGCTTTACAAAGAAATCAAATAACA 59.884 33.333 5.89 0.00 38.28 2.41
5665 5884 5.221803 CCAATCATGCTAGTAGAATCCTGGT 60.222 44.000 0.00 0.00 0.00 4.00
5666 5885 5.243981 CCAATCATGCTAGTAGAATCCTGG 58.756 45.833 0.00 0.00 0.00 4.45
5719 5938 8.292448 ACTGTGCATAGTCTCAACTTATTTTTG 58.708 33.333 10.73 0.00 36.92 2.44
5725 5957 6.426937 GGAAAACTGTGCATAGTCTCAACTTA 59.573 38.462 17.08 0.00 36.92 2.24
5749 5981 9.778741 TGTATTAGCAATTTAGGAGATAACTGG 57.221 33.333 0.00 0.00 0.00 4.00
5804 6037 6.295180 GGGAGGTAGTATTATCGAAGGGAAAG 60.295 46.154 0.00 0.00 0.00 2.62
5808 6041 4.675038 AGGGAGGTAGTATTATCGAAGGG 58.325 47.826 0.00 0.00 0.00 3.95
5809 6042 6.150809 GTGTAGGGAGGTAGTATTATCGAAGG 59.849 46.154 0.00 0.00 0.00 3.46
5813 6046 8.804912 ATTAGTGTAGGGAGGTAGTATTATCG 57.195 38.462 0.00 0.00 0.00 2.92
5831 6064 9.880157 AACTGTAAAACCGTCATATATTAGTGT 57.120 29.630 0.00 0.00 0.00 3.55
5842 6075 6.438259 TCAAATTGAACTGTAAAACCGTCA 57.562 33.333 0.00 0.00 0.00 4.35
5847 6080 5.748152 TGCAGCTCAAATTGAACTGTAAAAC 59.252 36.000 22.51 9.95 41.34 2.43
5892 6125 4.489306 ACAAACCTATTAGTCCCTCTGC 57.511 45.455 0.00 0.00 0.00 4.26
6061 6299 4.922692 CCTCGCAAGCATTTAAATTGTCAA 59.077 37.500 0.00 0.00 37.18 3.18
6113 6353 3.827008 TCAGCCAGCAGGAACTTATAG 57.173 47.619 0.00 0.00 34.60 1.31
6119 6359 1.035932 ATGCATCAGCCAGCAGGAAC 61.036 55.000 0.00 0.00 44.94 3.62
6144 6384 4.106909 TGCAAGCAAATGAAGCAATATCG 58.893 39.130 0.00 0.00 31.42 2.92
6155 6395 1.798725 CGTCGCCTGCAAGCAAATG 60.799 57.895 8.26 0.00 0.00 2.32
6362 6602 0.542333 GGGAAGAAGGGTCAGTAGCC 59.458 60.000 0.00 0.00 44.09 3.93
6685 6931 4.744795 TCTTCCTCTAGCTTTGTGATCC 57.255 45.455 0.00 0.00 0.00 3.36
6711 6957 4.092675 GTCTCGCCTGAAATCTTCTTCTTG 59.907 45.833 0.00 0.00 0.00 3.02
6712 6958 4.020662 AGTCTCGCCTGAAATCTTCTTCTT 60.021 41.667 0.00 0.00 0.00 2.52
6713 6959 3.513515 AGTCTCGCCTGAAATCTTCTTCT 59.486 43.478 0.00 0.00 0.00 2.85
6714 6960 3.855858 AGTCTCGCCTGAAATCTTCTTC 58.144 45.455 0.00 0.00 0.00 2.87
6715 6961 3.971245 AGTCTCGCCTGAAATCTTCTT 57.029 42.857 0.00 0.00 0.00 2.52
6716 6962 3.674682 CGAAGTCTCGCCTGAAATCTTCT 60.675 47.826 0.00 0.00 38.45 2.85
6717 6963 2.600867 CGAAGTCTCGCCTGAAATCTTC 59.399 50.000 0.00 0.00 38.45 2.87
6718 6964 2.611518 CGAAGTCTCGCCTGAAATCTT 58.388 47.619 0.00 0.00 38.45 2.40
6719 6965 1.134965 CCGAAGTCTCGCCTGAAATCT 60.135 52.381 0.00 0.00 44.04 2.40
6734 6980 6.279513 AGAAGCCTCTATGATAATCCGAAG 57.720 41.667 0.00 0.00 0.00 3.79
6742 6990 6.322931 TGTATCCCAAGAAGCCTCTATGATA 58.677 40.000 0.00 0.00 0.00 2.15
6750 6998 7.978099 AATTTATTTGTATCCCAAGAAGCCT 57.022 32.000 0.00 0.00 33.75 4.58
6832 7082 6.013984 AGGTTCGTTCTTGACTTAATCCCTAA 60.014 38.462 0.00 0.00 0.00 2.69
6872 7122 2.222863 GCAGCGGCAAATTAAAATGCAG 60.223 45.455 15.22 12.73 44.32 4.41
6942 7195 2.112190 CTAGGGGGTTCTCTTCAGTCC 58.888 57.143 0.00 0.00 0.00 3.85
7021 7275 3.006247 GCCTAGAAAGCTTCACAGAAGG 58.994 50.000 0.00 7.24 0.00 3.46
7135 7389 8.237811 AGTTTATATGAACCCATTCCAACATC 57.762 34.615 6.74 0.00 33.49 3.06
7180 7434 9.725019 TCAAAAGATCTTTCTTGAGTAAGCATA 57.275 29.630 20.71 0.00 41.42 3.14
7181 7435 8.627208 TCAAAAGATCTTTCTTGAGTAAGCAT 57.373 30.769 20.71 0.00 41.42 3.79
7238 7492 9.971922 GCTGCCTTTTCTATATCAAAATATTGT 57.028 29.630 0.00 0.00 37.79 2.71
7241 7495 9.578576 TGAGCTGCCTTTTCTATATCAAAATAT 57.421 29.630 0.00 0.00 32.72 1.28
7242 7496 8.978874 TGAGCTGCCTTTTCTATATCAAAATA 57.021 30.769 0.00 0.00 0.00 1.40
7243 7497 7.886629 TGAGCTGCCTTTTCTATATCAAAAT 57.113 32.000 0.00 0.00 0.00 1.82
7244 7498 7.701539 TTGAGCTGCCTTTTCTATATCAAAA 57.298 32.000 0.00 0.00 0.00 2.44
7245 7499 7.629222 GCTTTGAGCTGCCTTTTCTATATCAAA 60.629 37.037 0.00 1.36 38.45 2.69
7246 7500 6.183360 GCTTTGAGCTGCCTTTTCTATATCAA 60.183 38.462 0.00 0.00 38.45 2.57
7247 7501 5.297776 GCTTTGAGCTGCCTTTTCTATATCA 59.702 40.000 0.00 0.00 38.45 2.15
7248 7502 5.756849 GCTTTGAGCTGCCTTTTCTATATC 58.243 41.667 0.00 0.00 38.45 1.63
7249 7503 5.764487 GCTTTGAGCTGCCTTTTCTATAT 57.236 39.130 0.00 0.00 38.45 0.86
7274 7528 3.696051 ACAAGTTAAGCCATGCATAGGTG 59.304 43.478 0.00 0.00 0.00 4.00
7275 7529 3.968265 ACAAGTTAAGCCATGCATAGGT 58.032 40.909 0.00 0.00 0.00 3.08
7276 7530 4.158394 ACAACAAGTTAAGCCATGCATAGG 59.842 41.667 0.00 4.76 0.00 2.57
7277 7531 5.314923 ACAACAAGTTAAGCCATGCATAG 57.685 39.130 0.00 0.00 0.00 2.23
7278 7532 5.943416 AGTACAACAAGTTAAGCCATGCATA 59.057 36.000 0.00 0.00 0.00 3.14
7279 7533 4.766891 AGTACAACAAGTTAAGCCATGCAT 59.233 37.500 0.00 0.00 0.00 3.96
7280 7534 4.141287 AGTACAACAAGTTAAGCCATGCA 58.859 39.130 0.00 0.00 0.00 3.96
7281 7535 4.379499 GGAGTACAACAAGTTAAGCCATGC 60.379 45.833 0.00 0.00 0.00 4.06
7282 7536 4.156008 GGGAGTACAACAAGTTAAGCCATG 59.844 45.833 0.00 0.00 0.00 3.66
7283 7537 4.042934 AGGGAGTACAACAAGTTAAGCCAT 59.957 41.667 0.00 0.00 0.00 4.40
7284 7538 3.393278 AGGGAGTACAACAAGTTAAGCCA 59.607 43.478 0.00 0.00 0.00 4.75
7285 7539 4.001652 GAGGGAGTACAACAAGTTAAGCC 58.998 47.826 0.00 0.00 0.00 4.35
7286 7540 4.001652 GGAGGGAGTACAACAAGTTAAGC 58.998 47.826 0.00 0.00 0.00 3.09
7287 7541 4.243270 CGGAGGGAGTACAACAAGTTAAG 58.757 47.826 0.00 0.00 0.00 1.85
7288 7542 3.642848 ACGGAGGGAGTACAACAAGTTAA 59.357 43.478 0.00 0.00 0.00 2.01
7289 7543 3.233507 ACGGAGGGAGTACAACAAGTTA 58.766 45.455 0.00 0.00 0.00 2.24
7290 7544 2.044758 ACGGAGGGAGTACAACAAGTT 58.955 47.619 0.00 0.00 0.00 2.66
7291 7545 1.713297 ACGGAGGGAGTACAACAAGT 58.287 50.000 0.00 0.00 0.00 3.16
7292 7546 2.612221 GGAACGGAGGGAGTACAACAAG 60.612 54.545 0.00 0.00 0.00 3.16
7293 7547 1.345415 GGAACGGAGGGAGTACAACAA 59.655 52.381 0.00 0.00 0.00 2.83
7294 7548 0.971386 GGAACGGAGGGAGTACAACA 59.029 55.000 0.00 0.00 0.00 3.33
7295 7549 1.264295 AGGAACGGAGGGAGTACAAC 58.736 55.000 0.00 0.00 0.00 3.32
7296 7550 2.905415 TAGGAACGGAGGGAGTACAA 57.095 50.000 0.00 0.00 0.00 2.41
7434 10205 9.667107 CCCTCTGTTCACAAATATAAGTCTTTA 57.333 33.333 0.00 0.00 0.00 1.85
7437 10208 7.181125 ACTCCCTCTGTTCACAAATATAAGTCT 59.819 37.037 0.00 0.00 0.00 3.24
7449 10220 6.127423 TGCTACTAAATACTCCCTCTGTTCAC 60.127 42.308 0.00 0.00 0.00 3.18
7450 10221 5.955959 TGCTACTAAATACTCCCTCTGTTCA 59.044 40.000 0.00 0.00 0.00 3.18
7465 10236 3.641906 GACCTGCTCCCTATGCTACTAAA 59.358 47.826 0.00 0.00 0.00 1.85
7466 10237 3.231818 GACCTGCTCCCTATGCTACTAA 58.768 50.000 0.00 0.00 0.00 2.24
7467 10238 2.177016 TGACCTGCTCCCTATGCTACTA 59.823 50.000 0.00 0.00 0.00 1.82
7468 10239 1.062886 TGACCTGCTCCCTATGCTACT 60.063 52.381 0.00 0.00 0.00 2.57
7469 10240 1.414158 TGACCTGCTCCCTATGCTAC 58.586 55.000 0.00 0.00 0.00 3.58
7470 10241 2.174685 TTGACCTGCTCCCTATGCTA 57.825 50.000 0.00 0.00 0.00 3.49
7471 10242 1.211457 CTTTGACCTGCTCCCTATGCT 59.789 52.381 0.00 0.00 0.00 3.79
7472 10243 1.673168 CTTTGACCTGCTCCCTATGC 58.327 55.000 0.00 0.00 0.00 3.14
7473 10244 1.065199 TGCTTTGACCTGCTCCCTATG 60.065 52.381 0.00 0.00 0.00 2.23
7474 10245 1.211457 CTGCTTTGACCTGCTCCCTAT 59.789 52.381 0.00 0.00 0.00 2.57
7475 10246 0.615331 CTGCTTTGACCTGCTCCCTA 59.385 55.000 0.00 0.00 0.00 3.53
7476 10247 1.377994 CTGCTTTGACCTGCTCCCT 59.622 57.895 0.00 0.00 0.00 4.20
7477 10248 0.324943 TACTGCTTTGACCTGCTCCC 59.675 55.000 0.00 0.00 0.00 4.30
7478 10249 1.270839 TGTACTGCTTTGACCTGCTCC 60.271 52.381 0.00 0.00 0.00 4.70
7479 10250 2.169832 TGTACTGCTTTGACCTGCTC 57.830 50.000 0.00 0.00 0.00 4.26
7480 10251 2.867109 ATGTACTGCTTTGACCTGCT 57.133 45.000 0.00 0.00 0.00 4.24
7481 10252 3.503748 AGAAATGTACTGCTTTGACCTGC 59.496 43.478 0.00 0.00 0.00 4.85
7482 10253 5.695851 AAGAAATGTACTGCTTTGACCTG 57.304 39.130 0.00 0.00 0.00 4.00
7483 10254 7.665559 TGAATAAGAAATGTACTGCTTTGACCT 59.334 33.333 0.00 0.00 0.00 3.85
7484 10255 7.816640 TGAATAAGAAATGTACTGCTTTGACC 58.183 34.615 0.00 0.00 0.00 4.02
7485 10256 7.965107 CCTGAATAAGAAATGTACTGCTTTGAC 59.035 37.037 0.00 0.00 0.00 3.18
7486 10257 7.121168 CCCTGAATAAGAAATGTACTGCTTTGA 59.879 37.037 0.00 0.00 0.00 2.69
7487 10258 7.121168 TCCCTGAATAAGAAATGTACTGCTTTG 59.879 37.037 0.00 0.00 0.00 2.77
7488 10259 7.175104 TCCCTGAATAAGAAATGTACTGCTTT 58.825 34.615 0.00 0.00 0.00 3.51
7489 10260 6.721318 TCCCTGAATAAGAAATGTACTGCTT 58.279 36.000 0.00 0.00 0.00 3.91
7490 10261 6.313519 TCCCTGAATAAGAAATGTACTGCT 57.686 37.500 0.00 0.00 0.00 4.24
7491 10262 7.389053 CCTATCCCTGAATAAGAAATGTACTGC 59.611 40.741 0.00 0.00 0.00 4.40
7492 10263 8.432805 ACCTATCCCTGAATAAGAAATGTACTG 58.567 37.037 0.00 0.00 0.00 2.74
7493 10264 8.432805 CACCTATCCCTGAATAAGAAATGTACT 58.567 37.037 0.00 0.00 0.00 2.73
7494 10265 8.429641 TCACCTATCCCTGAATAAGAAATGTAC 58.570 37.037 0.00 0.00 0.00 2.90
7495 10266 8.561536 TCACCTATCCCTGAATAAGAAATGTA 57.438 34.615 0.00 0.00 0.00 2.29
7496 10267 7.451731 TCACCTATCCCTGAATAAGAAATGT 57.548 36.000 0.00 0.00 0.00 2.71
7497 10268 8.790718 CATTCACCTATCCCTGAATAAGAAATG 58.209 37.037 0.00 0.00 35.37 2.32
7498 10269 8.727149 TCATTCACCTATCCCTGAATAAGAAAT 58.273 33.333 0.00 0.00 35.37 2.17
7499 10270 8.101309 TCATTCACCTATCCCTGAATAAGAAA 57.899 34.615 0.00 0.00 35.37 2.52
7500 10271 7.690301 GCTCATTCACCTATCCCTGAATAAGAA 60.690 40.741 0.00 0.00 35.37 2.52
7501 10272 6.239714 GCTCATTCACCTATCCCTGAATAAGA 60.240 42.308 0.00 0.00 35.37 2.10
7502 10273 5.936956 GCTCATTCACCTATCCCTGAATAAG 59.063 44.000 0.00 0.00 35.37 1.73
7503 10274 5.608437 AGCTCATTCACCTATCCCTGAATAA 59.392 40.000 0.00 0.00 35.37 1.40
7504 10275 5.158141 AGCTCATTCACCTATCCCTGAATA 58.842 41.667 0.00 0.00 35.37 1.75
7505 10276 3.979347 AGCTCATTCACCTATCCCTGAAT 59.021 43.478 0.00 0.00 37.56 2.57
7506 10277 3.387962 AGCTCATTCACCTATCCCTGAA 58.612 45.455 0.00 0.00 0.00 3.02
7507 10278 3.051940 AGCTCATTCACCTATCCCTGA 57.948 47.619 0.00 0.00 0.00 3.86
7508 10279 3.853355 AAGCTCATTCACCTATCCCTG 57.147 47.619 0.00 0.00 0.00 4.45
7509 10280 6.521527 AATTAAGCTCATTCACCTATCCCT 57.478 37.500 0.00 0.00 0.00 4.20
7510 10281 6.547510 ACAAATTAAGCTCATTCACCTATCCC 59.452 38.462 0.00 0.00 0.00 3.85
7511 10282 7.283127 TCACAAATTAAGCTCATTCACCTATCC 59.717 37.037 0.00 0.00 0.00 2.59
7512 10283 8.213518 TCACAAATTAAGCTCATTCACCTATC 57.786 34.615 0.00 0.00 0.00 2.08
7513 10284 8.579850 TTCACAAATTAAGCTCATTCACCTAT 57.420 30.769 0.00 0.00 0.00 2.57
7514 10285 7.994425 TTCACAAATTAAGCTCATTCACCTA 57.006 32.000 0.00 0.00 0.00 3.08
7515 10286 6.899393 TTCACAAATTAAGCTCATTCACCT 57.101 33.333 0.00 0.00 0.00 4.00
7516 10287 7.945033 TTTTCACAAATTAAGCTCATTCACC 57.055 32.000 0.00 0.00 0.00 4.02
7542 10313 9.471084 GCACATGTAAAACCTACTTAACATTTT 57.529 29.630 0.00 0.00 0.00 1.82
7543 10314 8.085909 GGCACATGTAAAACCTACTTAACATTT 58.914 33.333 0.00 0.00 0.00 2.32
7544 10315 7.574217 CGGCACATGTAAAACCTACTTAACATT 60.574 37.037 0.00 0.00 0.00 2.71
7545 10316 6.128117 CGGCACATGTAAAACCTACTTAACAT 60.128 38.462 0.00 0.00 0.00 2.71
7546 10317 5.179742 CGGCACATGTAAAACCTACTTAACA 59.820 40.000 0.00 0.00 0.00 2.41
7547 10318 5.391203 CCGGCACATGTAAAACCTACTTAAC 60.391 44.000 0.00 0.00 0.00 2.01
7548 10319 4.696402 CCGGCACATGTAAAACCTACTTAA 59.304 41.667 0.00 0.00 0.00 1.85
7549 10320 4.255301 CCGGCACATGTAAAACCTACTTA 58.745 43.478 0.00 0.00 0.00 2.24
7550 10321 3.078837 CCGGCACATGTAAAACCTACTT 58.921 45.455 0.00 0.00 0.00 2.24
7551 10322 2.039348 ACCGGCACATGTAAAACCTACT 59.961 45.455 0.00 0.00 0.00 2.57
7552 10323 2.429478 ACCGGCACATGTAAAACCTAC 58.571 47.619 0.00 0.00 0.00 3.18
7553 10324 2.863132 ACCGGCACATGTAAAACCTA 57.137 45.000 0.00 0.00 0.00 3.08
7554 10325 1.989706 AACCGGCACATGTAAAACCT 58.010 45.000 0.00 0.00 0.00 3.50
7555 10326 3.919223 TTAACCGGCACATGTAAAACC 57.081 42.857 0.00 0.00 0.00 3.27
7556 10327 4.149221 GCTTTTAACCGGCACATGTAAAAC 59.851 41.667 0.00 0.00 0.00 2.43
7557 10328 4.038162 AGCTTTTAACCGGCACATGTAAAA 59.962 37.500 0.00 0.00 0.00 1.52
7558 10329 3.570550 AGCTTTTAACCGGCACATGTAAA 59.429 39.130 0.00 0.00 0.00 2.01
7559 10330 3.150767 AGCTTTTAACCGGCACATGTAA 58.849 40.909 0.00 0.00 0.00 2.41
7560 10331 2.785562 AGCTTTTAACCGGCACATGTA 58.214 42.857 0.00 0.00 0.00 2.29
7561 10332 1.616159 AGCTTTTAACCGGCACATGT 58.384 45.000 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.