Multiple sequence alignment - TraesCS5A01G313700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G313700 chr5A 100.000 4230 0 0 1 4230 524395213 524399442 0.000000e+00 7812.0
1 TraesCS5A01G313700 chr5A 90.267 750 25 16 3482 4230 524326814 524327516 0.000000e+00 937.0
2 TraesCS5A01G313700 chr5A 91.667 504 24 5 50 537 524326261 524326762 0.000000e+00 682.0
3 TraesCS5A01G313700 chr5A 100.000 40 0 0 530 569 524326778 524326817 1.630000e-09 75.0
4 TraesCS5A01G313700 chr3D 94.148 2546 107 11 967 3483 543499004 543501536 0.000000e+00 3838.0
5 TraesCS5A01G313700 chr3D 94.071 2547 113 12 967 3486 542834343 542836878 0.000000e+00 3832.0
6 TraesCS5A01G313700 chr3D 93.725 2550 117 21 967 3485 461559334 461561871 0.000000e+00 3783.0
7 TraesCS5A01G313700 chr3D 92.803 528 20 1 973 1482 97111388 97110861 0.000000e+00 749.0
8 TraesCS5A01G313700 chr3D 93.750 416 23 2 552 967 478119413 478119825 4.650000e-174 621.0
9 TraesCS5A01G313700 chr4D 94.055 2540 112 12 967 3482 130443286 130440762 0.000000e+00 3818.0
10 TraesCS5A01G313700 chr4D 93.728 2551 120 17 967 3483 303072800 303075344 0.000000e+00 3788.0
11 TraesCS5A01G313700 chr4D 95.489 399 18 0 569 967 303072345 303072743 4.610000e-179 638.0
12 TraesCS5A01G313700 chr2D 93.853 2554 116 15 967 3488 634063412 634060868 0.000000e+00 3808.0
13 TraesCS5A01G313700 chr2D 93.341 2553 120 14 967 3483 589512654 589515192 0.000000e+00 3727.0
14 TraesCS5A01G313700 chr2D 93.226 2554 127 22 969 3482 538070299 538072846 0.000000e+00 3716.0
15 TraesCS5A01G313700 chr2D 94.566 1233 44 4 967 2181 533256446 533257673 0.000000e+00 1884.0
16 TraesCS5A01G313700 chr2D 95.960 396 16 0 572 967 388079134 388078739 0.000000e+00 643.0
17 TraesCS5A01G313700 chr2D 95.466 397 18 0 571 967 634063866 634063470 5.970000e-178 634.0
18 TraesCS5A01G313700 chr2D 96.275 349 11 2 967 1315 408330942 408330596 4.740000e-159 571.0
19 TraesCS5A01G313700 chr5D 93.681 2548 114 12 967 3482 238121823 238124355 0.000000e+00 3770.0
20 TraesCS5A01G313700 chr5D 93.914 1216 53 6 967 2161 430918417 430919632 0.000000e+00 1816.0
21 TraesCS5A01G313700 chr5D 94.533 750 24 3 3482 4230 412453890 412454623 0.000000e+00 1142.0
22 TraesCS5A01G313700 chr5D 98.081 521 8 2 50 569 412453374 412453893 0.000000e+00 905.0
23 TraesCS5A01G313700 chr5D 94.987 399 20 0 569 967 70401288 70400890 9.980000e-176 627.0
24 TraesCS5A01G313700 chr7D 93.490 2550 122 16 967 3485 116647852 116650388 0.000000e+00 3749.0
25 TraesCS5A01G313700 chr7D 94.763 401 21 0 567 967 116647395 116647795 3.590000e-175 625.0
26 TraesCS5A01G313700 chr7D 98.148 54 1 0 1 54 536932262 536932315 1.250000e-15 95.3
27 TraesCS5A01G313700 chr6D 93.423 2539 117 19 974 3477 378742531 378740008 0.000000e+00 3718.0
28 TraesCS5A01G313700 chr6D 94.541 403 19 1 565 967 469297949 469298348 1.670000e-173 619.0
29 TraesCS5A01G313700 chr6D 88.995 209 18 3 3575 3782 456280484 456280688 1.950000e-63 254.0
30 TraesCS5A01G313700 chr3A 92.192 2536 157 16 973 3477 384203699 384201174 0.000000e+00 3548.0
31 TraesCS5A01G313700 chr3A 87.560 209 22 3 3576 3783 713220909 713221114 5.470000e-59 239.0
32 TraesCS5A01G313700 chr1A 93.673 1628 71 14 967 2571 587375702 587374084 0.000000e+00 2407.0
33 TraesCS5A01G313700 chr5B 96.133 750 19 2 3482 4230 496811318 496812058 0.000000e+00 1216.0
34 TraesCS5A01G313700 chr5B 97.688 519 10 2 50 567 496579419 496579936 0.000000e+00 891.0
35 TraesCS5A01G313700 chr5B 97.115 520 10 5 50 569 496810807 496811321 0.000000e+00 872.0
36 TraesCS5A01G313700 chr5B 94.746 552 17 4 3482 4031 496579935 496580476 0.000000e+00 848.0
37 TraesCS5A01G313700 chr5B 95.567 203 8 1 4028 4230 496580710 496580911 1.470000e-84 324.0
38 TraesCS5A01G313700 chr4B 94.776 402 20 1 567 967 519348067 519348468 3.590000e-175 625.0
39 TraesCS5A01G313700 chr4B 98.113 53 1 0 1 53 295615401 295615453 4.500000e-15 93.5
40 TraesCS5A01G313700 chr4B 96.491 57 1 1 1 56 295617615 295617671 4.500000e-15 93.5
41 TraesCS5A01G313700 chr2B 94.776 402 20 1 566 967 72759021 72759421 3.590000e-175 625.0
42 TraesCS5A01G313700 chrUn 89.048 210 18 3 3574 3782 45985322 45985117 5.430000e-64 255.0
43 TraesCS5A01G313700 chr2A 88.732 213 18 4 3571 3782 488003439 488003646 5.430000e-64 255.0
44 TraesCS5A01G313700 chr2A 96.296 54 2 0 1 54 189171037 189171090 5.830000e-14 89.8
45 TraesCS5A01G313700 chr2A 96.296 54 2 0 1 54 189173352 189173405 5.830000e-14 89.8
46 TraesCS5A01G313700 chr1B 88.263 213 20 3 3571 3782 291967754 291967962 2.530000e-62 250.0
47 TraesCS5A01G313700 chr3B 98.113 53 1 0 1 53 541526373 541526425 4.500000e-15 93.5
48 TraesCS5A01G313700 chr1D 98.113 53 1 0 1 53 137402956 137403008 4.500000e-15 93.5
49 TraesCS5A01G313700 chr1D 96.364 55 2 0 1 55 31327290 31327344 1.620000e-14 91.6
50 TraesCS5A01G313700 chr1D 96.296 54 2 0 1 54 137408304 137408357 5.830000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G313700 chr5A 524395213 524399442 4229 False 7812.000000 7812 100.000000 1 4230 1 chr5A.!!$F1 4229
1 TraesCS5A01G313700 chr5A 524326261 524327516 1255 False 564.666667 937 93.978000 50 4230 3 chr5A.!!$F2 4180
2 TraesCS5A01G313700 chr3D 543499004 543501536 2532 False 3838.000000 3838 94.148000 967 3483 1 chr3D.!!$F4 2516
3 TraesCS5A01G313700 chr3D 542834343 542836878 2535 False 3832.000000 3832 94.071000 967 3486 1 chr3D.!!$F3 2519
4 TraesCS5A01G313700 chr3D 461559334 461561871 2537 False 3783.000000 3783 93.725000 967 3485 1 chr3D.!!$F1 2518
5 TraesCS5A01G313700 chr3D 97110861 97111388 527 True 749.000000 749 92.803000 973 1482 1 chr3D.!!$R1 509
6 TraesCS5A01G313700 chr4D 130440762 130443286 2524 True 3818.000000 3818 94.055000 967 3482 1 chr4D.!!$R1 2515
7 TraesCS5A01G313700 chr4D 303072345 303075344 2999 False 2213.000000 3788 94.608500 569 3483 2 chr4D.!!$F1 2914
8 TraesCS5A01G313700 chr2D 589512654 589515192 2538 False 3727.000000 3727 93.341000 967 3483 1 chr2D.!!$F3 2516
9 TraesCS5A01G313700 chr2D 538070299 538072846 2547 False 3716.000000 3716 93.226000 969 3482 1 chr2D.!!$F2 2513
10 TraesCS5A01G313700 chr2D 634060868 634063866 2998 True 2221.000000 3808 94.659500 571 3488 2 chr2D.!!$R3 2917
11 TraesCS5A01G313700 chr2D 533256446 533257673 1227 False 1884.000000 1884 94.566000 967 2181 1 chr2D.!!$F1 1214
12 TraesCS5A01G313700 chr5D 238121823 238124355 2532 False 3770.000000 3770 93.681000 967 3482 1 chr5D.!!$F1 2515
13 TraesCS5A01G313700 chr5D 430918417 430919632 1215 False 1816.000000 1816 93.914000 967 2161 1 chr5D.!!$F2 1194
14 TraesCS5A01G313700 chr5D 412453374 412454623 1249 False 1023.500000 1142 96.307000 50 4230 2 chr5D.!!$F3 4180
15 TraesCS5A01G313700 chr7D 116647395 116650388 2993 False 2187.000000 3749 94.126500 567 3485 2 chr7D.!!$F2 2918
16 TraesCS5A01G313700 chr6D 378740008 378742531 2523 True 3718.000000 3718 93.423000 974 3477 1 chr6D.!!$R1 2503
17 TraesCS5A01G313700 chr3A 384201174 384203699 2525 True 3548.000000 3548 92.192000 973 3477 1 chr3A.!!$R1 2504
18 TraesCS5A01G313700 chr1A 587374084 587375702 1618 True 2407.000000 2407 93.673000 967 2571 1 chr1A.!!$R1 1604
19 TraesCS5A01G313700 chr5B 496810807 496812058 1251 False 1044.000000 1216 96.624000 50 4230 2 chr5B.!!$F2 4180
20 TraesCS5A01G313700 chr5B 496579419 496580911 1492 False 687.666667 891 96.000333 50 4230 3 chr5B.!!$F1 4180

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
46 47 0.178301 GCCTGGTAGGGTACAAGCTC 59.822 60.0 0.0 0.0 35.37 4.09 F
681 724 0.584396 CGCACGGAACTTAAAGCACA 59.416 50.0 0.0 0.0 0.00 4.57 F
1547 1673 0.178767 TCCGAGATGGCACCTGATTG 59.821 55.0 0.0 0.0 37.80 2.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1547 1673 0.171455 ATCAGACGCGAACACCTCTC 59.829 55.0 15.93 0.0 0.00 3.20 R
1800 1947 0.397941 CCTCTTGCCCACAGAACTCA 59.602 55.0 0.00 0.0 0.00 3.41 R
3267 3619 0.388006 GTGTTTGGTTGCATACGGCC 60.388 55.0 0.00 0.0 43.89 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.166489 CTCCTTCCCTTACTGCTTACG 57.834 52.381 0.00 0.00 0.00 3.18
21 22 2.496470 CTCCTTCCCTTACTGCTTACGT 59.504 50.000 0.00 0.00 0.00 3.57
22 23 2.494870 TCCTTCCCTTACTGCTTACGTC 59.505 50.000 0.00 0.00 0.00 4.34
23 24 2.418334 CCTTCCCTTACTGCTTACGTCC 60.418 54.545 0.00 0.00 0.00 4.79
24 25 1.188863 TCCCTTACTGCTTACGTCCC 58.811 55.000 0.00 0.00 0.00 4.46
25 26 0.899720 CCCTTACTGCTTACGTCCCA 59.100 55.000 0.00 0.00 0.00 4.37
26 27 1.134788 CCCTTACTGCTTACGTCCCAG 60.135 57.143 0.00 0.00 0.00 4.45
27 28 1.134788 CCTTACTGCTTACGTCCCAGG 60.135 57.143 12.68 0.00 0.00 4.45
28 29 0.248289 TTACTGCTTACGTCCCAGGC 59.752 55.000 12.68 0.23 0.00 4.85
29 30 1.610554 TACTGCTTACGTCCCAGGCC 61.611 60.000 12.68 0.00 0.00 5.19
30 31 2.606519 TGCTTACGTCCCAGGCCT 60.607 61.111 0.00 0.00 0.00 5.19
31 32 2.125106 GCTTACGTCCCAGGCCTG 60.125 66.667 26.87 26.87 0.00 4.85
40 41 3.643398 CCAGGCCTGGTAGGGTAC 58.357 66.667 39.52 0.00 45.53 3.34
41 42 1.306654 CCAGGCCTGGTAGGGTACA 60.307 63.158 39.52 0.00 45.53 2.90
42 43 0.912487 CCAGGCCTGGTAGGGTACAA 60.912 60.000 39.52 0.00 45.53 2.41
43 44 0.541863 CAGGCCTGGTAGGGTACAAG 59.458 60.000 26.14 0.00 35.37 3.16
44 45 1.223763 GGCCTGGTAGGGTACAAGC 59.776 63.158 0.00 0.00 35.37 4.01
45 46 1.272554 GGCCTGGTAGGGTACAAGCT 61.273 60.000 0.00 0.00 35.37 3.74
46 47 0.178301 GCCTGGTAGGGTACAAGCTC 59.822 60.000 0.00 0.00 35.37 4.09
47 48 0.831307 CCTGGTAGGGTACAAGCTCC 59.169 60.000 0.00 0.00 0.00 4.70
48 49 1.622725 CCTGGTAGGGTACAAGCTCCT 60.623 57.143 0.00 0.00 34.85 3.69
318 333 9.859427 CCTTTAATCATTTTATCAACTGCAAGA 57.141 29.630 0.00 0.00 37.43 3.02
408 427 5.009110 TGTTAACTCACAAATTGATCCGCAA 59.991 36.000 7.22 0.00 41.53 4.85
428 447 2.222953 GACGAACCAACACGGCGATG 62.223 60.000 16.62 11.08 39.03 3.84
481 501 4.261572 GCAATGCAAAGTGTAGAGGAAACA 60.262 41.667 0.00 0.00 0.00 2.83
485 505 6.801539 TGCAAAGTGTAGAGGAAACATTAG 57.198 37.500 0.00 0.00 0.00 1.73
496 516 6.942976 AGAGGAAACATTAGATTTACCGTGA 58.057 36.000 0.00 0.00 0.00 4.35
512 532 4.461198 ACCGTGAAAAAGAGAGGAAACAT 58.539 39.130 0.00 0.00 0.00 2.71
526 546 8.766476 AGAGAGGAAACATTAGAATCATGAGAA 58.234 33.333 0.09 0.00 0.00 2.87
528 548 9.745018 AGAGGAAACATTAGAATCATGAGAAAA 57.255 29.630 0.09 0.00 0.00 2.29
577 620 2.914695 ACACAAACTAAGGGCGTGTA 57.085 45.000 0.00 0.00 38.95 2.90
681 724 0.584396 CGCACGGAACTTAAAGCACA 59.416 50.000 0.00 0.00 0.00 4.57
726 769 1.064296 CGAATCGGCAGTAGCTCGT 59.936 57.895 0.00 0.00 41.70 4.18
775 818 3.991536 GACACGCTTCTCCCCTCGC 62.992 68.421 0.00 0.00 0.00 5.03
794 837 3.473647 CGAGCAGGGGAGATGGCA 61.474 66.667 0.00 0.00 0.00 4.92
819 862 4.736631 GCCCGCGTCGCTGAAAAC 62.737 66.667 16.36 0.00 0.00 2.43
918 961 0.818296 CATTCTCCCTCCGTTCGAGT 59.182 55.000 0.00 0.00 36.82 4.18
1088 1191 4.276926 GGGTTTGATCTAGATGCATGGTTC 59.723 45.833 10.74 0.00 0.00 3.62
1356 1481 7.148507 GCTTACTATGATAGTGATGAACCATGC 60.149 40.741 15.08 3.24 39.81 4.06
1391 1516 1.133025 GCTTTCATGGATTGTCCGGTG 59.867 52.381 0.00 0.00 40.17 4.94
1500 1625 1.302033 CGACAGCCAGTTTGCTCCT 60.302 57.895 0.00 0.00 40.32 3.69
1547 1673 0.178767 TCCGAGATGGCACCTGATTG 59.821 55.000 0.00 0.00 37.80 2.67
1611 1752 0.397941 TTGAGCCAACTACTGCTGCT 59.602 50.000 0.00 0.00 38.11 4.24
1612 1753 0.321034 TGAGCCAACTACTGCTGCTG 60.321 55.000 4.89 4.89 38.11 4.41
1613 1754 0.321122 GAGCCAACTACTGCTGCTGT 60.321 55.000 16.37 16.37 38.11 4.40
1893 2208 2.027377 CCAAGTGTCCAAGCTGAGAGAT 60.027 50.000 0.00 0.00 0.00 2.75
1896 2211 2.496871 AGTGTCCAAGCTGAGAGATCTG 59.503 50.000 0.00 0.00 0.00 2.90
1917 2232 2.592861 GGCGCCTCATGGGATGAC 60.593 66.667 22.15 0.00 37.23 3.06
2050 2365 7.148656 GCAACTAACAACACTTGTGTTTCATTT 60.149 33.333 15.46 9.53 44.59 2.32
2199 2516 0.044092 TCCCATGCCAGACTTCCCTA 59.956 55.000 0.00 0.00 0.00 3.53
2270 2588 1.470098 CCCTTCGACAAGCCATTTGAG 59.530 52.381 0.00 0.00 39.21 3.02
2313 2631 0.398381 GAGAGGAGGCCTGATGGAGT 60.398 60.000 12.00 0.00 31.76 3.85
2389 2711 4.785453 GGAGTGCAAGCCCCTCGG 62.785 72.222 0.00 0.00 0.00 4.63
2809 3153 4.467795 AGTGCTAGGAAGAACTTGCTATGA 59.532 41.667 14.20 4.04 38.62 2.15
2827 3171 2.836262 TGACGTATGATCATGCATGCA 58.164 42.857 25.04 25.04 31.39 3.96
2828 3172 3.404899 TGACGTATGATCATGCATGCAT 58.595 40.909 27.46 27.46 37.08 3.96
3001 3348 1.377725 ATGGGAAGAAGCCAGTGCG 60.378 57.895 0.00 0.00 44.33 5.34
3123 3473 0.179018 GACAGTGGCAAGGTTGGAGT 60.179 55.000 0.00 0.00 0.00 3.85
3151 3502 1.066430 GTGGATCGTCAGTTTGGGCTA 60.066 52.381 0.00 0.00 0.00 3.93
3267 3619 5.121768 GGTACAAGGTAAGCACAACATGTAG 59.878 44.000 0.00 0.00 0.00 2.74
3285 3637 0.538516 AGGCCGTATGCAACCAAACA 60.539 50.000 0.00 0.00 43.89 2.83
3403 3756 3.545703 ACTTGCAGATGGTGTATTAGGC 58.454 45.455 0.00 0.00 0.00 3.93
3412 3765 4.931027 TGGTGTATTAGGCCCTGTTTTA 57.069 40.909 0.00 0.00 0.00 1.52
3477 3831 3.056250 TGTTCACAACAGCAACCAAACAT 60.056 39.130 0.00 0.00 36.25 2.71
3488 3842 2.279935 ACCAAACATGCCCTAAACGA 57.720 45.000 0.00 0.00 0.00 3.85
3489 3843 2.159382 ACCAAACATGCCCTAAACGAG 58.841 47.619 0.00 0.00 0.00 4.18
3490 3844 2.159382 CCAAACATGCCCTAAACGAGT 58.841 47.619 0.00 0.00 0.00 4.18
3491 3845 3.244630 ACCAAACATGCCCTAAACGAGTA 60.245 43.478 0.00 0.00 0.00 2.59
3492 3846 3.945285 CCAAACATGCCCTAAACGAGTAT 59.055 43.478 0.00 0.00 0.00 2.12
3493 3847 5.120399 CCAAACATGCCCTAAACGAGTATA 58.880 41.667 0.00 0.00 0.00 1.47
3494 3848 5.763204 CCAAACATGCCCTAAACGAGTATAT 59.237 40.000 0.00 0.00 0.00 0.86
3495 3849 6.293407 CCAAACATGCCCTAAACGAGTATATG 60.293 42.308 0.00 0.00 0.00 1.78
3496 3850 5.801531 ACATGCCCTAAACGAGTATATGA 57.198 39.130 0.00 0.00 0.00 2.15
3497 3851 5.539048 ACATGCCCTAAACGAGTATATGAC 58.461 41.667 0.00 0.00 0.00 3.06
3498 3852 5.069914 ACATGCCCTAAACGAGTATATGACA 59.930 40.000 0.00 0.00 0.00 3.58
3499 3853 5.801531 TGCCCTAAACGAGTATATGACAT 57.198 39.130 0.00 0.00 0.00 3.06
3500 3854 5.538118 TGCCCTAAACGAGTATATGACATG 58.462 41.667 0.00 0.00 0.00 3.21
3501 3855 4.389077 GCCCTAAACGAGTATATGACATGC 59.611 45.833 0.00 0.00 0.00 4.06
3502 3856 5.538118 CCCTAAACGAGTATATGACATGCA 58.462 41.667 0.00 0.00 0.00 3.96
3503 3857 5.635280 CCCTAAACGAGTATATGACATGCAG 59.365 44.000 0.00 0.00 0.00 4.41
3504 3858 6.447162 CCTAAACGAGTATATGACATGCAGA 58.553 40.000 0.00 0.00 0.00 4.26
3505 3859 7.093354 CCTAAACGAGTATATGACATGCAGAT 58.907 38.462 0.00 0.00 32.27 2.90
3506 3860 6.775939 AAACGAGTATATGACATGCAGATG 57.224 37.500 0.00 0.00 35.49 2.90
3507 3861 4.240888 ACGAGTATATGACATGCAGATGC 58.759 43.478 0.00 0.00 42.50 3.91
3534 3888 2.187351 GCACAAGCACGTTGAAAAGA 57.813 45.000 0.00 0.00 38.60 2.52
3535 3889 2.525055 GCACAAGCACGTTGAAAAGAA 58.475 42.857 0.00 0.00 38.60 2.52
3536 3890 2.278875 GCACAAGCACGTTGAAAAGAAC 59.721 45.455 0.00 0.00 38.60 3.01
3537 3891 3.758300 CACAAGCACGTTGAAAAGAACT 58.242 40.909 0.00 0.00 38.60 3.01
3538 3892 4.165779 CACAAGCACGTTGAAAAGAACTT 58.834 39.130 0.00 0.00 38.60 2.66
3539 3893 4.262976 CACAAGCACGTTGAAAAGAACTTC 59.737 41.667 0.00 0.00 38.60 3.01
3540 3894 4.083003 ACAAGCACGTTGAAAAGAACTTCA 60.083 37.500 0.00 0.00 38.60 3.02
3541 3895 4.900635 AGCACGTTGAAAAGAACTTCAT 57.099 36.364 0.00 0.00 35.31 2.57
3542 3896 6.183360 ACAAGCACGTTGAAAAGAACTTCATA 60.183 34.615 0.00 0.00 38.60 2.15
3543 3897 6.560253 AGCACGTTGAAAAGAACTTCATAT 57.440 33.333 0.00 0.00 35.31 1.78
3544 3898 6.373779 AGCACGTTGAAAAGAACTTCATATG 58.626 36.000 0.00 0.00 35.31 1.78
3545 3899 6.017109 AGCACGTTGAAAAGAACTTCATATGT 60.017 34.615 1.90 0.00 35.31 2.29
3546 3900 6.086765 GCACGTTGAAAAGAACTTCATATGTG 59.913 38.462 1.90 0.00 36.98 3.21
3547 3901 6.086765 CACGTTGAAAAGAACTTCATATGTGC 59.913 38.462 1.90 0.00 35.31 4.57
3548 3902 5.569059 CGTTGAAAAGAACTTCATATGTGCC 59.431 40.000 1.90 0.00 35.31 5.01
3549 3903 6.568462 CGTTGAAAAGAACTTCATATGTGCCT 60.568 38.462 1.90 0.00 35.31 4.75
3550 3904 6.899393 TGAAAAGAACTTCATATGTGCCTT 57.101 33.333 1.90 2.75 30.31 4.35
3551 3905 7.288810 TGAAAAGAACTTCATATGTGCCTTT 57.711 32.000 1.90 7.72 30.31 3.11
3552 3906 8.402798 TGAAAAGAACTTCATATGTGCCTTTA 57.597 30.769 1.90 0.00 30.31 1.85
3553 3907 9.023962 TGAAAAGAACTTCATATGTGCCTTTAT 57.976 29.630 1.90 3.55 30.31 1.40
3554 3908 9.860898 GAAAAGAACTTCATATGTGCCTTTATT 57.139 29.630 1.90 0.00 0.00 1.40
3558 3912 9.860898 AGAACTTCATATGTGCCTTTATTTTTC 57.139 29.630 1.90 0.00 0.00 2.29
3559 3913 9.860898 GAACTTCATATGTGCCTTTATTTTTCT 57.139 29.630 1.90 0.00 0.00 2.52
3560 3914 9.860898 AACTTCATATGTGCCTTTATTTTTCTC 57.139 29.630 1.90 0.00 0.00 2.87
3561 3915 9.023962 ACTTCATATGTGCCTTTATTTTTCTCA 57.976 29.630 1.90 0.00 0.00 3.27
3562 3916 9.859427 CTTCATATGTGCCTTTATTTTTCTCAA 57.141 29.630 1.90 0.00 0.00 3.02
3593 3947 9.904198 AAATCAATAAAGGGTGGATTTTATTGG 57.096 29.630 20.60 9.44 46.82 3.16
3594 3948 8.622572 ATCAATAAAGGGTGGATTTTATTGGT 57.377 30.769 20.60 15.19 46.82 3.67
3595 3949 8.442660 TCAATAAAGGGTGGATTTTATTGGTT 57.557 30.769 20.60 0.00 46.82 3.67
3596 3950 8.536175 TCAATAAAGGGTGGATTTTATTGGTTC 58.464 33.333 20.60 0.00 46.82 3.62
3597 3951 8.317679 CAATAAAGGGTGGATTTTATTGGTTCA 58.682 33.333 16.29 0.00 45.06 3.18
3598 3952 6.755542 AAAGGGTGGATTTTATTGGTTCAA 57.244 33.333 0.00 0.00 0.00 2.69
3599 3953 6.755542 AAGGGTGGATTTTATTGGTTCAAA 57.244 33.333 0.00 0.00 0.00 2.69
3600 3954 6.755542 AGGGTGGATTTTATTGGTTCAAAA 57.244 33.333 0.00 0.00 0.00 2.44
3601 3955 7.328404 AGGGTGGATTTTATTGGTTCAAAAT 57.672 32.000 0.00 0.00 37.12 1.82
3602 3956 7.167535 AGGGTGGATTTTATTGGTTCAAAATG 58.832 34.615 0.00 0.00 35.14 2.32
3603 3957 6.374053 GGGTGGATTTTATTGGTTCAAAATGG 59.626 38.462 0.00 0.00 35.14 3.16
3604 3958 7.164803 GGTGGATTTTATTGGTTCAAAATGGA 58.835 34.615 0.00 0.00 35.14 3.41
3605 3959 7.334171 GGTGGATTTTATTGGTTCAAAATGGAG 59.666 37.037 0.00 0.00 35.14 3.86
3606 3960 6.878389 TGGATTTTATTGGTTCAAAATGGAGC 59.122 34.615 0.00 0.00 35.14 4.70
3607 3961 6.878389 GGATTTTATTGGTTCAAAATGGAGCA 59.122 34.615 0.00 0.00 35.14 4.26
3608 3962 7.553760 GGATTTTATTGGTTCAAAATGGAGCAT 59.446 33.333 0.00 0.00 35.14 3.79
3609 3963 7.903995 TTTTATTGGTTCAAAATGGAGCATC 57.096 32.000 0.00 0.00 0.00 3.91
3610 3964 6.602410 TTATTGGTTCAAAATGGAGCATCA 57.398 33.333 0.00 0.00 36.25 3.07
3611 3965 4.952071 TTGGTTCAAAATGGAGCATCAA 57.048 36.364 0.00 0.00 36.25 2.57
3612 3966 4.524316 TGGTTCAAAATGGAGCATCAAG 57.476 40.909 0.00 0.00 36.25 3.02
3613 3967 4.151121 TGGTTCAAAATGGAGCATCAAGA 58.849 39.130 0.00 0.00 36.25 3.02
3614 3968 4.219070 TGGTTCAAAATGGAGCATCAAGAG 59.781 41.667 0.00 0.00 36.25 2.85
3615 3969 4.381292 GGTTCAAAATGGAGCATCAAGAGG 60.381 45.833 0.00 0.00 36.25 3.69
3616 3970 4.305539 TCAAAATGGAGCATCAAGAGGA 57.694 40.909 0.00 0.00 36.25 3.71
3617 3971 4.863548 TCAAAATGGAGCATCAAGAGGAT 58.136 39.130 0.00 0.00 36.25 3.24
3618 3972 6.005066 TCAAAATGGAGCATCAAGAGGATA 57.995 37.500 0.00 0.00 36.25 2.59
3619 3973 5.824624 TCAAAATGGAGCATCAAGAGGATAC 59.175 40.000 0.00 0.00 36.25 2.24
3620 3974 5.378230 AAATGGAGCATCAAGAGGATACA 57.622 39.130 0.00 0.00 36.25 2.29
3621 3975 5.378230 AATGGAGCATCAAGAGGATACAA 57.622 39.130 0.00 0.00 36.25 2.41
3622 3976 4.842531 TGGAGCATCAAGAGGATACAAA 57.157 40.909 0.00 0.00 36.25 2.83
3623 3977 4.517285 TGGAGCATCAAGAGGATACAAAC 58.483 43.478 0.00 0.00 36.25 2.93
3624 3978 4.019411 TGGAGCATCAAGAGGATACAAACA 60.019 41.667 0.00 0.00 36.25 2.83
3625 3979 4.333926 GGAGCATCAAGAGGATACAAACAC 59.666 45.833 0.00 0.00 36.25 3.32
3626 3980 5.171339 AGCATCAAGAGGATACAAACACT 57.829 39.130 0.00 0.00 41.41 3.55
3627 3981 6.299805 AGCATCAAGAGGATACAAACACTA 57.700 37.500 0.00 0.00 41.41 2.74
3628 3982 6.893583 AGCATCAAGAGGATACAAACACTAT 58.106 36.000 0.00 0.00 41.41 2.12
3629 3983 6.765036 AGCATCAAGAGGATACAAACACTATG 59.235 38.462 0.00 0.00 41.41 2.23
3630 3984 6.763135 GCATCAAGAGGATACAAACACTATGA 59.237 38.462 0.00 0.00 41.41 2.15
3631 3985 7.042187 GCATCAAGAGGATACAAACACTATGAG 60.042 40.741 0.00 0.00 41.41 2.90
3632 3986 6.341316 TCAAGAGGATACAAACACTATGAGC 58.659 40.000 0.00 0.00 41.41 4.26
3633 3987 5.939764 AGAGGATACAAACACTATGAGCA 57.060 39.130 0.00 0.00 41.41 4.26
3634 3988 5.665459 AGAGGATACAAACACTATGAGCAC 58.335 41.667 0.00 0.00 41.41 4.40
3635 3989 5.187772 AGAGGATACAAACACTATGAGCACA 59.812 40.000 0.00 0.00 41.41 4.57
3636 3990 5.178797 AGGATACAAACACTATGAGCACAC 58.821 41.667 0.00 0.00 41.41 3.82
3637 3991 4.935205 GGATACAAACACTATGAGCACACA 59.065 41.667 0.00 0.00 0.00 3.72
3638 3992 5.163854 GGATACAAACACTATGAGCACACAC 60.164 44.000 0.00 0.00 0.00 3.82
3639 3993 2.878406 ACAAACACTATGAGCACACACC 59.122 45.455 0.00 0.00 0.00 4.16
3640 3994 2.185004 AACACTATGAGCACACACCC 57.815 50.000 0.00 0.00 0.00 4.61
3641 3995 0.037326 ACACTATGAGCACACACCCG 60.037 55.000 0.00 0.00 0.00 5.28
3642 3996 0.740868 CACTATGAGCACACACCCGG 60.741 60.000 0.00 0.00 0.00 5.73
3643 3997 1.815421 CTATGAGCACACACCCGGC 60.815 63.158 0.00 0.00 0.00 6.13
3644 3998 3.323758 TATGAGCACACACCCGGCC 62.324 63.158 0.00 0.00 0.00 6.13
3651 4005 4.415150 CACACCCGGCCTCTGCAT 62.415 66.667 0.00 0.00 40.13 3.96
3652 4006 2.687200 ACACCCGGCCTCTGCATA 60.687 61.111 0.00 0.00 40.13 3.14
3653 4007 2.109799 CACCCGGCCTCTGCATAG 59.890 66.667 0.00 0.00 40.13 2.23
3654 4008 3.866582 ACCCGGCCTCTGCATAGC 61.867 66.667 0.00 0.00 40.13 2.97
3655 4009 3.554342 CCCGGCCTCTGCATAGCT 61.554 66.667 0.00 0.00 40.13 3.32
3656 4010 2.210013 CCCGGCCTCTGCATAGCTA 61.210 63.158 0.00 0.00 40.13 3.32
3657 4011 1.291588 CCGGCCTCTGCATAGCTAG 59.708 63.158 0.00 0.00 40.13 3.42
3658 4012 1.291588 CGGCCTCTGCATAGCTAGG 59.708 63.158 0.00 0.00 40.13 3.02
3659 4013 1.181741 CGGCCTCTGCATAGCTAGGA 61.182 60.000 10.11 0.00 40.13 2.94
3660 4014 1.274712 GGCCTCTGCATAGCTAGGAT 58.725 55.000 10.11 0.00 40.13 3.24
3661 4015 1.066286 GGCCTCTGCATAGCTAGGATG 60.066 57.143 10.11 0.00 40.13 3.51
3669 4023 2.141517 CATAGCTAGGATGCACACAGC 58.858 52.381 0.00 0.00 45.96 4.40
3675 4029 4.950744 GATGCACACAGCCAACAC 57.049 55.556 0.00 0.00 44.83 3.32
3676 4030 1.286880 GATGCACACAGCCAACACC 59.713 57.895 0.00 0.00 44.83 4.16
3677 4031 1.454572 GATGCACACAGCCAACACCA 61.455 55.000 0.00 0.00 44.83 4.17
3678 4032 1.042003 ATGCACACAGCCAACACCAA 61.042 50.000 0.00 0.00 44.83 3.67
3679 4033 1.226945 GCACACAGCCAACACCAAC 60.227 57.895 0.00 0.00 37.23 3.77
3680 4034 1.943116 GCACACAGCCAACACCAACA 61.943 55.000 0.00 0.00 37.23 3.33
3681 4035 0.179140 CACACAGCCAACACCAACAC 60.179 55.000 0.00 0.00 0.00 3.32
3682 4036 0.610509 ACACAGCCAACACCAACACA 60.611 50.000 0.00 0.00 0.00 3.72
3683 4037 0.179140 CACAGCCAACACCAACACAC 60.179 55.000 0.00 0.00 0.00 3.82
3684 4038 1.063972 CAGCCAACACCAACACACG 59.936 57.895 0.00 0.00 0.00 4.49
3685 4039 1.078072 AGCCAACACCAACACACGA 60.078 52.632 0.00 0.00 0.00 4.35
3686 4040 0.678366 AGCCAACACCAACACACGAA 60.678 50.000 0.00 0.00 0.00 3.85
3687 4041 0.524604 GCCAACACCAACACACGAAC 60.525 55.000 0.00 0.00 0.00 3.95
3688 4042 0.805614 CCAACACCAACACACGAACA 59.194 50.000 0.00 0.00 0.00 3.18
3689 4043 1.466697 CCAACACCAACACACGAACAC 60.467 52.381 0.00 0.00 0.00 3.32
3690 4044 1.197949 CAACACCAACACACGAACACA 59.802 47.619 0.00 0.00 0.00 3.72
3691 4045 1.524848 ACACCAACACACGAACACAA 58.475 45.000 0.00 0.00 0.00 3.33
3692 4046 1.880675 ACACCAACACACGAACACAAA 59.119 42.857 0.00 0.00 0.00 2.83
3693 4047 2.293677 ACACCAACACACGAACACAAAA 59.706 40.909 0.00 0.00 0.00 2.44
3694 4048 3.243434 ACACCAACACACGAACACAAAAA 60.243 39.130 0.00 0.00 0.00 1.94
3695 4049 3.120451 CACCAACACACGAACACAAAAAC 59.880 43.478 0.00 0.00 0.00 2.43
3696 4050 3.243434 ACCAACACACGAACACAAAAACA 60.243 39.130 0.00 0.00 0.00 2.83
3697 4051 3.120451 CCAACACACGAACACAAAAACAC 59.880 43.478 0.00 0.00 0.00 3.32
3698 4052 3.627732 ACACACGAACACAAAAACACA 57.372 38.095 0.00 0.00 0.00 3.72
3699 4053 3.301706 ACACACGAACACAAAAACACAC 58.698 40.909 0.00 0.00 0.00 3.82
3700 4054 2.659279 CACACGAACACAAAAACACACC 59.341 45.455 0.00 0.00 0.00 4.16
3701 4055 1.908247 CACGAACACAAAAACACACCG 59.092 47.619 0.00 0.00 0.00 4.94
3702 4056 1.135632 ACGAACACAAAAACACACCGG 60.136 47.619 0.00 0.00 0.00 5.28
3703 4057 1.273688 GAACACAAAAACACACCGGC 58.726 50.000 0.00 0.00 0.00 6.13
3704 4058 0.603569 AACACAAAAACACACCGGCA 59.396 45.000 0.00 0.00 0.00 5.69
3705 4059 0.109039 ACACAAAAACACACCGGCAC 60.109 50.000 0.00 0.00 0.00 5.01
3706 4060 0.804156 CACAAAAACACACCGGCACC 60.804 55.000 0.00 0.00 0.00 5.01
3707 4061 0.968393 ACAAAAACACACCGGCACCT 60.968 50.000 0.00 0.00 0.00 4.00
3708 4062 1.025812 CAAAAACACACCGGCACCTA 58.974 50.000 0.00 0.00 0.00 3.08
3709 4063 1.001815 CAAAAACACACCGGCACCTAG 60.002 52.381 0.00 0.00 0.00 3.02
3710 4064 1.170290 AAAACACACCGGCACCTAGC 61.170 55.000 0.00 0.00 44.65 3.42
3725 4079 4.991687 GCACCTAGCAAGTCATATAAGACC 59.008 45.833 4.52 0.00 44.79 3.85
3726 4080 5.453339 GCACCTAGCAAGTCATATAAGACCA 60.453 44.000 4.52 0.00 44.79 4.02
3727 4081 6.582636 CACCTAGCAAGTCATATAAGACCAA 58.417 40.000 4.52 0.00 39.34 3.67
3728 4082 7.047891 CACCTAGCAAGTCATATAAGACCAAA 58.952 38.462 4.52 0.00 39.34 3.28
3729 4083 7.225538 CACCTAGCAAGTCATATAAGACCAAAG 59.774 40.741 4.52 0.00 39.34 2.77
3730 4084 6.203723 CCTAGCAAGTCATATAAGACCAAAGC 59.796 42.308 4.52 4.51 39.34 3.51
3731 4085 5.749462 AGCAAGTCATATAAGACCAAAGCT 58.251 37.500 4.52 6.46 39.34 3.74
3732 4086 6.889198 AGCAAGTCATATAAGACCAAAGCTA 58.111 36.000 4.52 0.00 39.34 3.32
3733 4087 7.512992 AGCAAGTCATATAAGACCAAAGCTAT 58.487 34.615 4.52 0.00 39.34 2.97
3734 4088 7.443575 AGCAAGTCATATAAGACCAAAGCTATG 59.556 37.037 4.52 0.00 39.34 2.23
3735 4089 7.579726 CAAGTCATATAAGACCAAAGCTATGC 58.420 38.462 4.52 0.00 39.34 3.14
3736 4090 5.928839 AGTCATATAAGACCAAAGCTATGCG 59.071 40.000 4.52 0.00 39.34 4.73
3737 4091 5.696724 GTCATATAAGACCAAAGCTATGCGT 59.303 40.000 0.00 0.00 32.36 5.24
3738 4092 6.866770 GTCATATAAGACCAAAGCTATGCGTA 59.133 38.462 0.00 0.00 32.36 4.42
3739 4093 7.062371 GTCATATAAGACCAAAGCTATGCGTAG 59.938 40.741 8.70 8.70 32.36 3.51
3740 4094 2.604046 AGACCAAAGCTATGCGTAGG 57.396 50.000 14.75 0.98 0.00 3.18
3741 4095 0.938008 GACCAAAGCTATGCGTAGGC 59.062 55.000 14.75 0.00 40.52 3.93
3742 4096 0.810031 ACCAAAGCTATGCGTAGGCG 60.810 55.000 14.75 0.00 44.10 5.52
3743 4097 0.529773 CCAAAGCTATGCGTAGGCGA 60.530 55.000 14.75 0.00 44.10 5.54
3744 4098 0.855349 CAAAGCTATGCGTAGGCGAG 59.145 55.000 14.75 4.01 44.10 5.03
3745 4099 0.249489 AAAGCTATGCGTAGGCGAGG 60.249 55.000 14.75 0.00 44.10 4.63
3746 4100 1.107538 AAGCTATGCGTAGGCGAGGA 61.108 55.000 14.75 0.00 44.10 3.71
3747 4101 1.107538 AGCTATGCGTAGGCGAGGAA 61.108 55.000 14.75 0.00 44.10 3.36
3748 4102 0.249322 GCTATGCGTAGGCGAGGAAA 60.249 55.000 14.75 0.00 44.10 3.13
3749 4103 1.805120 GCTATGCGTAGGCGAGGAAAA 60.805 52.381 14.75 0.00 44.10 2.29
3750 4104 2.546778 CTATGCGTAGGCGAGGAAAAA 58.453 47.619 4.93 0.00 44.10 1.94
3774 4128 3.884318 GGAAAAGCCCCAAAGCCA 58.116 55.556 0.00 0.00 0.00 4.75
3775 4129 2.376063 GGAAAAGCCCCAAAGCCAT 58.624 52.632 0.00 0.00 0.00 4.40
3776 4130 0.250234 GGAAAAGCCCCAAAGCCATC 59.750 55.000 0.00 0.00 0.00 3.51
3777 4131 0.975887 GAAAAGCCCCAAAGCCATCA 59.024 50.000 0.00 0.00 0.00 3.07
3778 4132 0.978907 AAAAGCCCCAAAGCCATCAG 59.021 50.000 0.00 0.00 0.00 2.90
3818 4172 7.386851 TGGTCAAAAACTGTTTGGTTCAATAA 58.613 30.769 6.53 0.00 0.00 1.40
3843 4197 6.415573 TGCTACTACTCAAGACACTGAGATA 58.584 40.000 7.57 0.00 44.82 1.98
3844 4198 6.884836 TGCTACTACTCAAGACACTGAGATAA 59.115 38.462 7.57 0.00 44.82 1.75
3845 4199 7.558081 TGCTACTACTCAAGACACTGAGATAAT 59.442 37.037 7.57 0.00 44.82 1.28
3846 4200 9.058174 GCTACTACTCAAGACACTGAGATAATA 57.942 37.037 7.57 0.00 44.82 0.98
3885 4244 0.861837 CAGTGCGTTTCACCTCTGTC 59.138 55.000 0.00 0.00 46.81 3.51
4008 4367 3.929610 CAGAAATCGAGGGAAAGTCTGAC 59.070 47.826 0.00 0.00 33.53 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.494870 GACGTAAGCAGTAAGGGAAGGA 59.505 50.000 0.00 0.00 45.62 3.36
2 3 2.418334 GGACGTAAGCAGTAAGGGAAGG 60.418 54.545 0.00 0.00 45.62 3.46
4 5 1.551883 GGGACGTAAGCAGTAAGGGAA 59.448 52.381 0.00 0.00 45.62 3.97
5 6 1.188863 GGGACGTAAGCAGTAAGGGA 58.811 55.000 0.00 0.00 45.62 4.20
6 7 0.899720 TGGGACGTAAGCAGTAAGGG 59.100 55.000 0.00 0.00 45.62 3.95
7 8 1.134788 CCTGGGACGTAAGCAGTAAGG 60.135 57.143 0.00 0.00 45.62 2.69
8 9 1.739371 GCCTGGGACGTAAGCAGTAAG 60.739 57.143 0.00 0.00 45.62 2.34
9 10 0.248289 GCCTGGGACGTAAGCAGTAA 59.752 55.000 0.00 0.00 45.62 2.24
10 11 1.610554 GGCCTGGGACGTAAGCAGTA 61.611 60.000 0.00 0.00 45.62 2.74
11 12 2.663196 GCCTGGGACGTAAGCAGT 59.337 61.111 0.00 0.00 45.62 4.40
12 13 2.125106 GGCCTGGGACGTAAGCAG 60.125 66.667 0.00 0.00 45.62 4.24
13 14 2.606519 AGGCCTGGGACGTAAGCA 60.607 61.111 3.11 0.00 45.62 3.91
14 15 2.125106 CAGGCCTGGGACGTAAGC 60.125 66.667 26.14 0.00 45.62 3.09
15 16 2.584608 CCAGGCCTGGGACGTAAG 59.415 66.667 40.24 15.18 46.81 2.34
24 25 0.541863 CTTGTACCCTACCAGGCCTG 59.458 60.000 26.87 26.87 32.73 4.85
25 26 1.272554 GCTTGTACCCTACCAGGCCT 61.273 60.000 0.00 0.00 32.73 5.19
26 27 1.223763 GCTTGTACCCTACCAGGCC 59.776 63.158 0.00 0.00 32.73 5.19
27 28 0.178301 GAGCTTGTACCCTACCAGGC 59.822 60.000 0.00 0.00 32.73 4.85
28 29 0.831307 GGAGCTTGTACCCTACCAGG 59.169 60.000 0.00 0.00 34.30 4.45
29 30 1.867363 AGGAGCTTGTACCCTACCAG 58.133 55.000 0.00 0.00 0.00 4.00
30 31 2.743553 GTAGGAGCTTGTACCCTACCA 58.256 52.381 14.79 0.00 44.02 3.25
33 34 2.584031 TCTGGTAGGAGCTTGTACCCTA 59.416 50.000 18.25 8.20 38.38 3.53
34 35 1.361543 TCTGGTAGGAGCTTGTACCCT 59.638 52.381 18.25 9.10 38.38 4.34
35 36 1.861982 TCTGGTAGGAGCTTGTACCC 58.138 55.000 18.25 2.03 38.38 3.69
36 37 3.031736 TGATCTGGTAGGAGCTTGTACC 58.968 50.000 15.46 15.46 39.44 3.34
37 38 3.181474 GGTGATCTGGTAGGAGCTTGTAC 60.181 52.174 0.00 0.00 0.00 2.90
38 39 3.031736 GGTGATCTGGTAGGAGCTTGTA 58.968 50.000 0.00 0.00 0.00 2.41
39 40 1.834263 GGTGATCTGGTAGGAGCTTGT 59.166 52.381 0.00 0.00 0.00 3.16
40 41 1.833630 TGGTGATCTGGTAGGAGCTTG 59.166 52.381 0.00 0.00 0.00 4.01
41 42 2.254152 TGGTGATCTGGTAGGAGCTT 57.746 50.000 0.00 0.00 0.00 3.74
42 43 2.485966 ATGGTGATCTGGTAGGAGCT 57.514 50.000 0.00 0.00 0.00 4.09
43 44 4.689612 TTAATGGTGATCTGGTAGGAGC 57.310 45.455 0.00 0.00 0.00 4.70
44 45 5.280215 GGGATTAATGGTGATCTGGTAGGAG 60.280 48.000 0.00 0.00 0.00 3.69
45 46 4.597507 GGGATTAATGGTGATCTGGTAGGA 59.402 45.833 0.00 0.00 0.00 2.94
46 47 4.263506 GGGGATTAATGGTGATCTGGTAGG 60.264 50.000 0.00 0.00 0.00 3.18
47 48 4.350816 TGGGGATTAATGGTGATCTGGTAG 59.649 45.833 0.00 0.00 0.00 3.18
48 49 4.311613 TGGGGATTAATGGTGATCTGGTA 58.688 43.478 0.00 0.00 0.00 3.25
51 52 6.098695 ACATTTTGGGGATTAATGGTGATCTG 59.901 38.462 0.00 0.00 34.40 2.90
224 239 7.831193 GGTATGGGCATTAATTGTGAGATATCT 59.169 37.037 4.47 4.47 0.00 1.98
318 333 3.890756 TCACACCTTTCACATGCATCTTT 59.109 39.130 0.00 0.00 0.00 2.52
408 427 2.430382 ATCGCCGTGTTGGTTCGTCT 62.430 55.000 0.00 0.00 41.21 4.18
428 447 0.539438 TTGTTGTCCATGTGGGCCTC 60.539 55.000 4.53 0.49 39.61 4.70
444 463 0.881118 CATTGCACTAGCCGGTTTGT 59.119 50.000 1.90 0.00 41.13 2.83
481 501 8.319146 TCCTCTCTTTTTCACGGTAAATCTAAT 58.681 33.333 0.00 0.00 0.00 1.73
485 505 6.796705 TTCCTCTCTTTTTCACGGTAAATC 57.203 37.500 0.00 0.00 0.00 2.17
657 700 1.463056 CTTTAAGTTCCGTGCGATGCA 59.537 47.619 0.00 0.00 35.60 3.96
775 818 4.598894 CCATCTCCCCTGCTCGCG 62.599 72.222 0.00 0.00 0.00 5.87
813 856 1.550130 ATCCTCCCGCCGAGTTTTCA 61.550 55.000 0.00 0.00 36.82 2.69
819 862 2.279517 CGAAATCCTCCCGCCGAG 60.280 66.667 0.00 0.00 38.46 4.63
971 1072 2.441532 GAGGACGATGGGGGACGA 60.442 66.667 0.00 0.00 0.00 4.20
1088 1191 4.118410 GCTCACAGATCAGACCACTAATG 58.882 47.826 0.00 0.00 0.00 1.90
1141 1244 4.423625 ACATCTAGCCCTACCACAAATC 57.576 45.455 0.00 0.00 0.00 2.17
1356 1481 4.690184 TGAAAGCAGAAGCATACATGTG 57.310 40.909 9.11 0.00 45.49 3.21
1391 1516 3.498397 ACAGTAAGCATAGCACACAACAC 59.502 43.478 0.00 0.00 0.00 3.32
1547 1673 0.171455 ATCAGACGCGAACACCTCTC 59.829 55.000 15.93 0.00 0.00 3.20
1800 1947 0.397941 CCTCTTGCCCACAGAACTCA 59.602 55.000 0.00 0.00 0.00 3.41
1893 2208 4.519437 CATGAGGCGCCGCTCAGA 62.519 66.667 30.49 11.29 32.74 3.27
1917 2232 3.438087 CCAGAACTATGGAGCAAGTGTTG 59.562 47.826 0.00 0.00 43.57 3.33
2050 2365 1.069775 GTCCCTTGGGTGGTCCTAAA 58.930 55.000 5.51 0.00 33.89 1.85
2270 2588 1.001406 CTCTTCCTATCATGGACGGGC 59.999 57.143 0.00 0.00 35.58 6.13
2313 2631 5.648960 TCATGCTGCAAAAGACATTGATCTA 59.351 36.000 6.36 0.00 31.84 1.98
2389 2711 1.614241 ATACAGGTCAGGGTGGACGC 61.614 60.000 0.00 0.00 38.70 5.19
2604 2929 3.465296 ATCGTCGTCGTCGCCATCC 62.465 63.158 7.01 0.00 38.33 3.51
2612 2937 0.656259 ATCGTCATCATCGTCGTCGT 59.344 50.000 1.33 0.00 38.33 4.34
2622 2950 1.733360 TGTACGTCGTCATCGTCATCA 59.267 47.619 0.00 0.00 41.72 3.07
2827 3171 5.072741 TGGAGCAGAAAAGAAGTAAAGCAT 58.927 37.500 0.00 0.00 0.00 3.79
2828 3172 4.460263 TGGAGCAGAAAAGAAGTAAAGCA 58.540 39.130 0.00 0.00 0.00 3.91
2829 3173 5.635417 ATGGAGCAGAAAAGAAGTAAAGC 57.365 39.130 0.00 0.00 0.00 3.51
2830 3174 6.974965 ACAATGGAGCAGAAAAGAAGTAAAG 58.025 36.000 0.00 0.00 0.00 1.85
2840 3187 4.081752 ACACAAACAACAATGGAGCAGAAA 60.082 37.500 0.00 0.00 0.00 2.52
2948 3295 2.170607 CTGGGACCTTACCGATGAACAT 59.829 50.000 0.00 0.00 0.00 2.71
3001 3348 1.581934 TGCTATACGATGCCACTTGC 58.418 50.000 0.00 0.00 41.77 4.01
3097 3447 3.222173 ACCTTGCCACTGTCAACATTA 57.778 42.857 0.00 0.00 0.00 1.90
3099 3449 1.682854 CAACCTTGCCACTGTCAACAT 59.317 47.619 0.00 0.00 0.00 2.71
3123 3473 1.691976 ACTGACGATCCACCTTGACAA 59.308 47.619 0.00 0.00 0.00 3.18
3267 3619 0.388006 GTGTTTGGTTGCATACGGCC 60.388 55.000 0.00 0.00 43.89 6.13
3285 3637 3.353836 GCGGCACATGAACACGGT 61.354 61.111 0.00 0.00 0.00 4.83
3359 3711 2.817258 GTTTGGTTGCCTGCATGTAGTA 59.183 45.455 10.09 0.00 0.00 1.82
3364 3716 1.202557 AGTTGTTTGGTTGCCTGCATG 60.203 47.619 0.00 0.00 0.00 4.06
3412 3765 2.464403 AACCCAGCCTGGTTGAGCT 61.464 57.895 12.54 0.00 46.76 4.09
3477 3831 5.538118 CATGTCATATACTCGTTTAGGGCA 58.462 41.667 0.00 0.00 0.00 5.36
3515 3869 2.187351 TCTTTTCAACGTGCTTGTGC 57.813 45.000 0.00 0.00 40.20 4.57
3516 3870 3.758300 AGTTCTTTTCAACGTGCTTGTG 58.242 40.909 0.00 0.00 0.00 3.33
3517 3871 4.083003 TGAAGTTCTTTTCAACGTGCTTGT 60.083 37.500 4.17 0.00 34.32 3.16
3518 3872 4.411327 TGAAGTTCTTTTCAACGTGCTTG 58.589 39.130 4.17 0.00 34.32 4.01
3519 3873 4.695217 TGAAGTTCTTTTCAACGTGCTT 57.305 36.364 4.17 0.00 34.32 3.91
3520 3874 4.900635 ATGAAGTTCTTTTCAACGTGCT 57.099 36.364 4.17 0.00 40.21 4.40
3521 3875 6.086765 CACATATGAAGTTCTTTTCAACGTGC 59.913 38.462 10.38 0.00 40.21 5.34
3522 3876 6.086765 GCACATATGAAGTTCTTTTCAACGTG 59.913 38.462 10.38 2.77 40.21 4.49
3523 3877 6.142817 GCACATATGAAGTTCTTTTCAACGT 58.857 36.000 10.38 0.00 40.21 3.99
3524 3878 5.569059 GGCACATATGAAGTTCTTTTCAACG 59.431 40.000 10.38 0.00 40.21 4.10
3525 3879 6.681777 AGGCACATATGAAGTTCTTTTCAAC 58.318 36.000 10.38 0.00 40.21 3.18
3526 3880 6.899393 AGGCACATATGAAGTTCTTTTCAA 57.101 33.333 10.38 0.00 40.21 2.69
3527 3881 6.899393 AAGGCACATATGAAGTTCTTTTCA 57.101 33.333 10.38 0.00 41.00 2.69
3528 3882 9.860898 AATAAAGGCACATATGAAGTTCTTTTC 57.139 29.630 10.38 0.00 0.00 2.29
3532 3886 9.860898 GAAAAATAAAGGCACATATGAAGTTCT 57.139 29.630 10.38 1.76 0.00 3.01
3533 3887 9.860898 AGAAAAATAAAGGCACATATGAAGTTC 57.139 29.630 10.38 0.00 0.00 3.01
3534 3888 9.860898 GAGAAAAATAAAGGCACATATGAAGTT 57.139 29.630 10.38 0.00 0.00 2.66
3535 3889 9.023962 TGAGAAAAATAAAGGCACATATGAAGT 57.976 29.630 10.38 0.00 0.00 3.01
3536 3890 9.859427 TTGAGAAAAATAAAGGCACATATGAAG 57.141 29.630 10.38 2.58 0.00 3.02
3571 3925 8.317679 TGAACCAATAAAATCCACCCTTTATTG 58.682 33.333 15.50 15.50 46.05 1.90
3572 3926 8.442660 TGAACCAATAAAATCCACCCTTTATT 57.557 30.769 0.00 0.00 37.92 1.40
3573 3927 8.442660 TTGAACCAATAAAATCCACCCTTTAT 57.557 30.769 0.00 0.00 30.70 1.40
3574 3928 7.857404 TTGAACCAATAAAATCCACCCTTTA 57.143 32.000 0.00 0.00 0.00 1.85
3575 3929 6.755542 TTGAACCAATAAAATCCACCCTTT 57.244 33.333 0.00 0.00 0.00 3.11
3576 3930 6.755542 TTTGAACCAATAAAATCCACCCTT 57.244 33.333 0.00 0.00 0.00 3.95
3577 3931 6.755542 TTTTGAACCAATAAAATCCACCCT 57.244 33.333 0.00 0.00 0.00 4.34
3578 3932 6.374053 CCATTTTGAACCAATAAAATCCACCC 59.626 38.462 0.00 0.00 35.07 4.61
3579 3933 7.164803 TCCATTTTGAACCAATAAAATCCACC 58.835 34.615 0.00 0.00 35.07 4.61
3580 3934 7.148423 GCTCCATTTTGAACCAATAAAATCCAC 60.148 37.037 0.00 0.00 35.07 4.02
3581 3935 6.878389 GCTCCATTTTGAACCAATAAAATCCA 59.122 34.615 0.00 0.00 35.07 3.41
3582 3936 6.878389 TGCTCCATTTTGAACCAATAAAATCC 59.122 34.615 0.00 0.00 35.07 3.01
3583 3937 7.903995 TGCTCCATTTTGAACCAATAAAATC 57.096 32.000 0.00 0.00 35.07 2.17
3584 3938 8.102047 TGATGCTCCATTTTGAACCAATAAAAT 58.898 29.630 0.00 0.00 37.06 1.82
3585 3939 7.448420 TGATGCTCCATTTTGAACCAATAAAA 58.552 30.769 0.00 0.00 0.00 1.52
3586 3940 7.002250 TGATGCTCCATTTTGAACCAATAAA 57.998 32.000 0.00 0.00 0.00 1.40
3587 3941 6.602410 TGATGCTCCATTTTGAACCAATAA 57.398 33.333 0.00 0.00 0.00 1.40
3588 3942 6.436847 TCTTGATGCTCCATTTTGAACCAATA 59.563 34.615 0.00 0.00 0.00 1.90
3589 3943 5.246656 TCTTGATGCTCCATTTTGAACCAAT 59.753 36.000 0.00 0.00 0.00 3.16
3590 3944 4.588106 TCTTGATGCTCCATTTTGAACCAA 59.412 37.500 0.00 0.00 0.00 3.67
3591 3945 4.151121 TCTTGATGCTCCATTTTGAACCA 58.849 39.130 0.00 0.00 0.00 3.67
3592 3946 4.381292 CCTCTTGATGCTCCATTTTGAACC 60.381 45.833 0.00 0.00 0.00 3.62
3593 3947 4.460382 TCCTCTTGATGCTCCATTTTGAAC 59.540 41.667 0.00 0.00 0.00 3.18
3594 3948 4.665451 TCCTCTTGATGCTCCATTTTGAA 58.335 39.130 0.00 0.00 0.00 2.69
3595 3949 4.305539 TCCTCTTGATGCTCCATTTTGA 57.694 40.909 0.00 0.00 0.00 2.69
3596 3950 5.591472 TGTATCCTCTTGATGCTCCATTTTG 59.409 40.000 0.00 0.00 37.04 2.44
3597 3951 5.759059 TGTATCCTCTTGATGCTCCATTTT 58.241 37.500 0.00 0.00 37.04 1.82
3598 3952 5.378230 TGTATCCTCTTGATGCTCCATTT 57.622 39.130 0.00 0.00 37.04 2.32
3599 3953 5.378230 TTGTATCCTCTTGATGCTCCATT 57.622 39.130 0.00 0.00 37.04 3.16
3600 3954 5.128919 GTTTGTATCCTCTTGATGCTCCAT 58.871 41.667 0.00 0.00 37.04 3.41
3601 3955 4.019411 TGTTTGTATCCTCTTGATGCTCCA 60.019 41.667 0.00 0.00 37.04 3.86
3602 3956 4.333926 GTGTTTGTATCCTCTTGATGCTCC 59.666 45.833 0.00 0.00 37.04 4.70
3603 3957 5.181748 AGTGTTTGTATCCTCTTGATGCTC 58.818 41.667 0.00 0.00 37.04 4.26
3604 3958 5.171339 AGTGTTTGTATCCTCTTGATGCT 57.829 39.130 0.00 0.00 37.04 3.79
3605 3959 6.763135 TCATAGTGTTTGTATCCTCTTGATGC 59.237 38.462 0.00 0.00 36.68 3.91
3606 3960 7.042187 GCTCATAGTGTTTGTATCCTCTTGATG 60.042 40.741 0.00 0.00 34.76 3.07
3607 3961 6.989169 GCTCATAGTGTTTGTATCCTCTTGAT 59.011 38.462 0.00 0.00 37.49 2.57
3608 3962 6.070824 TGCTCATAGTGTTTGTATCCTCTTGA 60.071 38.462 0.00 0.00 0.00 3.02
3609 3963 6.036517 GTGCTCATAGTGTTTGTATCCTCTTG 59.963 42.308 0.00 0.00 0.00 3.02
3610 3964 6.109359 GTGCTCATAGTGTTTGTATCCTCTT 58.891 40.000 0.00 0.00 0.00 2.85
3611 3965 5.187772 TGTGCTCATAGTGTTTGTATCCTCT 59.812 40.000 0.00 0.00 0.00 3.69
3612 3966 5.292101 GTGTGCTCATAGTGTTTGTATCCTC 59.708 44.000 0.00 0.00 0.00 3.71
3613 3967 5.178797 GTGTGCTCATAGTGTTTGTATCCT 58.821 41.667 0.00 0.00 0.00 3.24
3614 3968 4.935205 TGTGTGCTCATAGTGTTTGTATCC 59.065 41.667 0.00 0.00 0.00 2.59
3615 3969 5.163854 GGTGTGTGCTCATAGTGTTTGTATC 60.164 44.000 0.00 0.00 0.00 2.24
3616 3970 4.695455 GGTGTGTGCTCATAGTGTTTGTAT 59.305 41.667 0.00 0.00 0.00 2.29
3617 3971 4.062293 GGTGTGTGCTCATAGTGTTTGTA 58.938 43.478 0.00 0.00 0.00 2.41
3618 3972 2.878406 GGTGTGTGCTCATAGTGTTTGT 59.122 45.455 0.00 0.00 0.00 2.83
3619 3973 2.226437 GGGTGTGTGCTCATAGTGTTTG 59.774 50.000 0.00 0.00 0.00 2.93
3620 3974 2.504367 GGGTGTGTGCTCATAGTGTTT 58.496 47.619 0.00 0.00 0.00 2.83
3621 3975 1.608025 CGGGTGTGTGCTCATAGTGTT 60.608 52.381 0.00 0.00 0.00 3.32
3622 3976 0.037326 CGGGTGTGTGCTCATAGTGT 60.037 55.000 0.00 0.00 0.00 3.55
3623 3977 0.740868 CCGGGTGTGTGCTCATAGTG 60.741 60.000 0.00 0.00 0.00 2.74
3624 3978 1.596934 CCGGGTGTGTGCTCATAGT 59.403 57.895 0.00 0.00 0.00 2.12
3625 3979 1.815421 GCCGGGTGTGTGCTCATAG 60.815 63.158 2.18 0.00 0.00 2.23
3626 3980 2.267642 GCCGGGTGTGTGCTCATA 59.732 61.111 2.18 0.00 0.00 2.15
3627 3981 4.722700 GGCCGGGTGTGTGCTCAT 62.723 66.667 2.18 0.00 0.00 2.90
3634 3988 2.930385 CTATGCAGAGGCCGGGTGTG 62.930 65.000 2.18 0.00 40.13 3.82
3635 3989 2.687200 TATGCAGAGGCCGGGTGT 60.687 61.111 2.18 0.00 40.13 4.16
3636 3990 2.109799 CTATGCAGAGGCCGGGTG 59.890 66.667 2.18 0.00 40.13 4.61
3637 3991 2.946988 TAGCTATGCAGAGGCCGGGT 62.947 60.000 10.92 0.00 40.13 5.28
3638 3992 2.164865 CTAGCTATGCAGAGGCCGGG 62.165 65.000 10.92 0.00 40.13 5.73
3639 3993 1.291588 CTAGCTATGCAGAGGCCGG 59.708 63.158 10.92 0.00 40.13 6.13
3640 3994 1.181741 TCCTAGCTATGCAGAGGCCG 61.182 60.000 10.92 0.23 40.13 6.13
3641 3995 1.066286 CATCCTAGCTATGCAGAGGCC 60.066 57.143 10.92 0.00 40.13 5.19
3642 3996 2.383368 CATCCTAGCTATGCAGAGGC 57.617 55.000 10.92 5.36 35.01 4.70
3649 4003 2.141517 GCTGTGTGCATCCTAGCTATG 58.858 52.381 0.00 0.00 42.31 2.23
3650 4004 1.071385 GGCTGTGTGCATCCTAGCTAT 59.929 52.381 12.70 0.00 45.15 2.97
3651 4005 0.465705 GGCTGTGTGCATCCTAGCTA 59.534 55.000 12.70 0.00 45.15 3.32
3652 4006 1.222936 GGCTGTGTGCATCCTAGCT 59.777 57.895 12.70 0.00 45.15 3.32
3653 4007 0.677731 TTGGCTGTGTGCATCCTAGC 60.678 55.000 0.00 0.00 45.15 3.42
3654 4008 1.089920 GTTGGCTGTGTGCATCCTAG 58.910 55.000 0.00 0.00 45.15 3.02
3655 4009 0.399833 TGTTGGCTGTGTGCATCCTA 59.600 50.000 0.00 0.00 45.15 2.94
3656 4010 1.151221 TGTTGGCTGTGTGCATCCT 59.849 52.632 0.00 0.00 45.15 3.24
3657 4011 1.286880 GTGTTGGCTGTGTGCATCC 59.713 57.895 0.00 0.00 45.15 3.51
3658 4012 1.286880 GGTGTTGGCTGTGTGCATC 59.713 57.895 0.00 0.00 45.15 3.91
3659 4013 1.042003 TTGGTGTTGGCTGTGTGCAT 61.042 50.000 0.00 0.00 45.15 3.96
3660 4014 1.680314 TTGGTGTTGGCTGTGTGCA 60.680 52.632 0.00 0.00 45.15 4.57
3661 4015 1.226945 GTTGGTGTTGGCTGTGTGC 60.227 57.895 0.00 0.00 41.94 4.57
3662 4016 0.179140 GTGTTGGTGTTGGCTGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
3663 4017 0.610509 TGTGTTGGTGTTGGCTGTGT 60.611 50.000 0.00 0.00 0.00 3.72
3664 4018 0.179140 GTGTGTTGGTGTTGGCTGTG 60.179 55.000 0.00 0.00 0.00 3.66
3665 4019 1.653094 CGTGTGTTGGTGTTGGCTGT 61.653 55.000 0.00 0.00 0.00 4.40
3666 4020 1.063972 CGTGTGTTGGTGTTGGCTG 59.936 57.895 0.00 0.00 0.00 4.85
3667 4021 0.678366 TTCGTGTGTTGGTGTTGGCT 60.678 50.000 0.00 0.00 0.00 4.75
3668 4022 0.524604 GTTCGTGTGTTGGTGTTGGC 60.525 55.000 0.00 0.00 0.00 4.52
3669 4023 0.805614 TGTTCGTGTGTTGGTGTTGG 59.194 50.000 0.00 0.00 0.00 3.77
3670 4024 1.197949 TGTGTTCGTGTGTTGGTGTTG 59.802 47.619 0.00 0.00 0.00 3.33
3671 4025 1.524848 TGTGTTCGTGTGTTGGTGTT 58.475 45.000 0.00 0.00 0.00 3.32
3672 4026 1.524848 TTGTGTTCGTGTGTTGGTGT 58.475 45.000 0.00 0.00 0.00 4.16
3673 4027 2.620779 TTTGTGTTCGTGTGTTGGTG 57.379 45.000 0.00 0.00 0.00 4.17
3674 4028 3.243434 TGTTTTTGTGTTCGTGTGTTGGT 60.243 39.130 0.00 0.00 0.00 3.67
3675 4029 3.120451 GTGTTTTTGTGTTCGTGTGTTGG 59.880 43.478 0.00 0.00 0.00 3.77
3676 4030 3.731216 TGTGTTTTTGTGTTCGTGTGTTG 59.269 39.130 0.00 0.00 0.00 3.33
3677 4031 3.731717 GTGTGTTTTTGTGTTCGTGTGTT 59.268 39.130 0.00 0.00 0.00 3.32
3678 4032 3.301706 GTGTGTTTTTGTGTTCGTGTGT 58.698 40.909 0.00 0.00 0.00 3.72
3679 4033 2.659279 GGTGTGTTTTTGTGTTCGTGTG 59.341 45.455 0.00 0.00 0.00 3.82
3680 4034 2.666069 CGGTGTGTTTTTGTGTTCGTGT 60.666 45.455 0.00 0.00 0.00 4.49
3681 4035 1.908247 CGGTGTGTTTTTGTGTTCGTG 59.092 47.619 0.00 0.00 0.00 4.35
3682 4036 1.135632 CCGGTGTGTTTTTGTGTTCGT 60.136 47.619 0.00 0.00 0.00 3.85
3683 4037 1.540407 CCGGTGTGTTTTTGTGTTCG 58.460 50.000 0.00 0.00 0.00 3.95
3684 4038 1.273688 GCCGGTGTGTTTTTGTGTTC 58.726 50.000 1.90 0.00 0.00 3.18
3685 4039 0.603569 TGCCGGTGTGTTTTTGTGTT 59.396 45.000 1.90 0.00 0.00 3.32
3686 4040 0.109039 GTGCCGGTGTGTTTTTGTGT 60.109 50.000 1.90 0.00 0.00 3.72
3687 4041 0.804156 GGTGCCGGTGTGTTTTTGTG 60.804 55.000 1.90 0.00 0.00 3.33
3688 4042 0.968393 AGGTGCCGGTGTGTTTTTGT 60.968 50.000 1.90 0.00 0.00 2.83
3689 4043 1.001815 CTAGGTGCCGGTGTGTTTTTG 60.002 52.381 1.90 0.00 0.00 2.44
3690 4044 1.314730 CTAGGTGCCGGTGTGTTTTT 58.685 50.000 1.90 0.00 0.00 1.94
3691 4045 1.170290 GCTAGGTGCCGGTGTGTTTT 61.170 55.000 1.90 0.00 35.15 2.43
3692 4046 1.599797 GCTAGGTGCCGGTGTGTTT 60.600 57.895 1.90 0.00 35.15 2.83
3693 4047 2.032071 GCTAGGTGCCGGTGTGTT 59.968 61.111 1.90 0.00 35.15 3.32
3694 4048 2.731691 CTTGCTAGGTGCCGGTGTGT 62.732 60.000 1.90 0.00 42.00 3.72
3695 4049 2.031919 TTGCTAGGTGCCGGTGTG 59.968 61.111 1.90 0.00 42.00 3.82
3696 4050 2.347490 CTTGCTAGGTGCCGGTGT 59.653 61.111 1.90 0.00 42.00 4.16
3697 4051 1.741770 GACTTGCTAGGTGCCGGTG 60.742 63.158 1.90 0.00 42.00 4.94
3698 4052 1.553690 ATGACTTGCTAGGTGCCGGT 61.554 55.000 1.90 0.00 42.00 5.28
3699 4053 0.464036 TATGACTTGCTAGGTGCCGG 59.536 55.000 0.00 0.00 42.00 6.13
3700 4054 2.533266 ATATGACTTGCTAGGTGCCG 57.467 50.000 0.00 0.00 42.00 5.69
3701 4055 4.991687 GTCTTATATGACTTGCTAGGTGCC 59.008 45.833 10.70 0.00 36.08 5.01
3702 4056 4.991687 GGTCTTATATGACTTGCTAGGTGC 59.008 45.833 15.98 0.00 38.36 5.01
3703 4057 6.161855 TGGTCTTATATGACTTGCTAGGTG 57.838 41.667 15.98 0.00 37.16 4.00
3704 4058 6.808321 TTGGTCTTATATGACTTGCTAGGT 57.192 37.500 15.98 0.00 37.16 3.08
3705 4059 6.203723 GCTTTGGTCTTATATGACTTGCTAGG 59.796 42.308 15.98 2.39 37.16 3.02
3706 4060 6.989169 AGCTTTGGTCTTATATGACTTGCTAG 59.011 38.462 15.98 0.00 37.16 3.42
3707 4061 6.889198 AGCTTTGGTCTTATATGACTTGCTA 58.111 36.000 15.98 0.00 37.16 3.49
3708 4062 5.749462 AGCTTTGGTCTTATATGACTTGCT 58.251 37.500 15.98 15.52 37.16 3.91
3709 4063 7.579726 CATAGCTTTGGTCTTATATGACTTGC 58.420 38.462 15.98 14.08 37.16 4.01
3710 4064 7.570140 CGCATAGCTTTGGTCTTATATGACTTG 60.570 40.741 15.98 7.29 37.16 3.16
3711 4065 6.425114 CGCATAGCTTTGGTCTTATATGACTT 59.575 38.462 15.98 2.16 37.16 3.01
3712 4066 5.928839 CGCATAGCTTTGGTCTTATATGACT 59.071 40.000 15.98 1.32 37.16 3.41
3713 4067 5.696724 ACGCATAGCTTTGGTCTTATATGAC 59.303 40.000 9.70 9.70 36.31 3.06
3714 4068 5.853936 ACGCATAGCTTTGGTCTTATATGA 58.146 37.500 6.29 0.00 0.00 2.15
3715 4069 6.311445 CCTACGCATAGCTTTGGTCTTATATG 59.689 42.308 6.29 0.00 0.00 1.78
3716 4070 6.398918 CCTACGCATAGCTTTGGTCTTATAT 58.601 40.000 6.29 0.00 0.00 0.86
3717 4071 5.779922 CCTACGCATAGCTTTGGTCTTATA 58.220 41.667 6.29 0.00 0.00 0.98
3718 4072 4.632153 CCTACGCATAGCTTTGGTCTTAT 58.368 43.478 6.29 0.00 0.00 1.73
3719 4073 3.740141 GCCTACGCATAGCTTTGGTCTTA 60.740 47.826 6.29 0.00 34.03 2.10
3720 4074 2.906354 CCTACGCATAGCTTTGGTCTT 58.094 47.619 6.29 0.00 0.00 3.01
3721 4075 1.473434 GCCTACGCATAGCTTTGGTCT 60.473 52.381 6.29 0.00 34.03 3.85
3722 4076 0.938008 GCCTACGCATAGCTTTGGTC 59.062 55.000 6.29 0.00 34.03 4.02
3723 4077 0.810031 CGCCTACGCATAGCTTTGGT 60.810 55.000 6.29 5.16 34.03 3.67
3724 4078 0.529773 TCGCCTACGCATAGCTTTGG 60.530 55.000 6.29 0.00 39.84 3.28
3725 4079 0.855349 CTCGCCTACGCATAGCTTTG 59.145 55.000 0.00 0.00 39.84 2.77
3726 4080 0.249489 CCTCGCCTACGCATAGCTTT 60.249 55.000 0.00 0.00 39.84 3.51
3727 4081 1.107538 TCCTCGCCTACGCATAGCTT 61.108 55.000 0.00 0.00 39.84 3.74
3728 4082 1.107538 TTCCTCGCCTACGCATAGCT 61.108 55.000 0.00 0.00 39.84 3.32
3729 4083 0.249322 TTTCCTCGCCTACGCATAGC 60.249 55.000 0.00 0.00 39.84 2.97
3730 4084 2.218953 TTTTCCTCGCCTACGCATAG 57.781 50.000 0.00 0.00 39.84 2.23
3731 4085 2.676632 TTTTTCCTCGCCTACGCATA 57.323 45.000 0.00 0.00 39.84 3.14
3732 4086 3.543884 TTTTTCCTCGCCTACGCAT 57.456 47.368 0.00 0.00 39.84 4.73
3757 4111 0.250234 GATGGCTTTGGGGCTTTTCC 59.750 55.000 0.00 0.00 41.48 3.13
3758 4112 0.975887 TGATGGCTTTGGGGCTTTTC 59.024 50.000 0.00 0.00 41.48 2.29
3759 4113 0.978907 CTGATGGCTTTGGGGCTTTT 59.021 50.000 0.00 0.00 41.48 2.27
3760 4114 0.114954 TCTGATGGCTTTGGGGCTTT 59.885 50.000 0.00 0.00 41.48 3.51
3761 4115 0.337428 ATCTGATGGCTTTGGGGCTT 59.663 50.000 0.00 0.00 41.48 4.35
3762 4116 0.106318 GATCTGATGGCTTTGGGGCT 60.106 55.000 0.00 0.00 41.48 5.19
3763 4117 1.111715 GGATCTGATGGCTTTGGGGC 61.112 60.000 0.00 0.00 41.27 5.80
3764 4118 0.820891 CGGATCTGATGGCTTTGGGG 60.821 60.000 0.00 0.00 0.00 4.96
3765 4119 1.450531 GCGGATCTGATGGCTTTGGG 61.451 60.000 5.48 0.00 0.00 4.12
3766 4120 1.779025 CGCGGATCTGATGGCTTTGG 61.779 60.000 5.48 0.00 0.00 3.28
3767 4121 1.645455 CGCGGATCTGATGGCTTTG 59.355 57.895 5.48 0.00 0.00 2.77
3768 4122 1.524621 CCGCGGATCTGATGGCTTT 60.525 57.895 24.07 0.00 0.00 3.51
3769 4123 2.109799 CCGCGGATCTGATGGCTT 59.890 61.111 24.07 0.00 0.00 4.35
3770 4124 2.257409 AAACCGCGGATCTGATGGCT 62.257 55.000 35.90 0.68 0.00 4.75
3771 4125 0.531974 TAAACCGCGGATCTGATGGC 60.532 55.000 35.90 0.00 0.00 4.40
3772 4126 2.169832 ATAAACCGCGGATCTGATGG 57.830 50.000 35.90 8.71 0.00 3.51
3773 4127 3.303990 CCAAATAAACCGCGGATCTGATG 60.304 47.826 35.90 21.84 0.00 3.07
3774 4128 2.878406 CCAAATAAACCGCGGATCTGAT 59.122 45.455 35.90 14.29 0.00 2.90
3775 4129 2.285083 CCAAATAAACCGCGGATCTGA 58.715 47.619 35.90 12.43 0.00 3.27
3776 4130 2.014128 ACCAAATAAACCGCGGATCTG 58.986 47.619 35.90 18.28 0.00 2.90
3777 4131 2.285977 GACCAAATAAACCGCGGATCT 58.714 47.619 35.90 17.75 0.00 2.75
3778 4132 2.011222 TGACCAAATAAACCGCGGATC 58.989 47.619 35.90 14.04 0.00 3.36
3818 4172 5.257262 TCTCAGTGTCTTGAGTAGTAGCAT 58.743 41.667 3.26 0.00 43.96 3.79
3843 4197 7.400052 ACTGGCCTTTGTCATCCTTATTTTATT 59.600 33.333 3.32 0.00 0.00 1.40
3844 4198 6.897413 ACTGGCCTTTGTCATCCTTATTTTAT 59.103 34.615 3.32 0.00 0.00 1.40
3845 4199 6.152661 CACTGGCCTTTGTCATCCTTATTTTA 59.847 38.462 3.32 0.00 0.00 1.52
3846 4200 5.047092 CACTGGCCTTTGTCATCCTTATTTT 60.047 40.000 3.32 0.00 0.00 1.82
3847 4201 4.463891 CACTGGCCTTTGTCATCCTTATTT 59.536 41.667 3.32 0.00 0.00 1.40
4008 4367 3.935315 ACTCTCATGGCCATTCATATCG 58.065 45.455 17.92 2.59 0.00 2.92
4104 4700 8.531982 TCAGTTTTAGACAGCTATAATCTGTGT 58.468 33.333 10.90 9.75 44.09 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.