Multiple sequence alignment - TraesCS5A01G313200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G313200 chr5A 100.000 7510 0 0 1 7510 524248123 524240614 0.000000e+00 13869.0
1 TraesCS5A01G313200 chr5D 92.401 4790 236 59 172 4934 412368114 412363426 0.000000e+00 6711.0
2 TraesCS5A01G313200 chr5D 94.636 1249 58 6 4900 6143 412363425 412362181 0.000000e+00 1927.0
3 TraesCS5A01G313200 chr5D 92.348 1137 66 13 6326 7450 412362088 412360961 0.000000e+00 1598.0
4 TraesCS5A01G313200 chr5D 94.203 69 3 1 7442 7510 412360794 412360727 3.710000e-18 104.0
5 TraesCS5A01G313200 chr5D 97.143 35 1 0 6175 6209 554506281 554506315 8.140000e-05 60.2
6 TraesCS5A01G313200 chr5B 90.940 3808 220 44 181 3952 496529968 496526250 0.000000e+00 5005.0
7 TraesCS5A01G313200 chr5B 94.222 2146 105 11 4006 6146 496525388 496523257 0.000000e+00 3258.0
8 TraesCS5A01G313200 chr5B 92.282 1192 59 17 6326 7510 496523086 496521921 0.000000e+00 1661.0
9 TraesCS5A01G313200 chr5B 87.654 324 34 3 3951 4274 496526195 496525878 9.200000e-99 372.0
10 TraesCS5A01G313200 chr5B 95.946 74 3 0 4201 4274 496525477 496525404 3.680000e-23 121.0
11 TraesCS5A01G313200 chr5B 87.342 79 3 3 6222 6300 496523245 496523174 4.830000e-12 84.2
12 TraesCS5A01G313200 chr2D 98.851 174 2 0 1 174 510649182 510649009 2.030000e-80 311.0
13 TraesCS5A01G313200 chr1B 97.778 180 4 0 3 182 15782612 15782433 2.030000e-80 311.0
14 TraesCS5A01G313200 chr1B 98.266 173 3 0 3 175 374736899 374737071 3.400000e-78 303.0
15 TraesCS5A01G313200 chr2A 96.721 183 5 1 3 185 710246022 710246203 3.400000e-78 303.0
16 TraesCS5A01G313200 chr3A 95.767 189 4 4 1 186 32057832 32057645 1.220000e-77 302.0
17 TraesCS5A01G313200 chr3A 95.789 190 3 5 3 187 419040765 419040576 1.220000e-77 302.0
18 TraesCS5A01G313200 chr6A 94.819 193 6 4 1 192 504934238 504934427 1.580000e-76 298.0
19 TraesCS5A01G313200 chrUn 93.909 197 7 5 1 197 26708428 26708237 7.370000e-75 292.0
20 TraesCS5A01G313200 chr3B 92.718 206 10 5 1 201 748824146 748823941 7.370000e-75 292.0
21 TraesCS5A01G313200 chr7D 90.110 91 9 0 996 1086 255975224 255975134 1.320000e-22 119.0
22 TraesCS5A01G313200 chr7B 89.011 91 10 0 996 1086 234596574 234596484 6.160000e-21 113.0
23 TraesCS5A01G313200 chr7A 89.011 91 10 0 996 1086 275922301 275922211 6.160000e-21 113.0
24 TraesCS5A01G313200 chr4A 100.000 34 0 0 6175 6208 614028149 614028116 6.290000e-06 63.9
25 TraesCS5A01G313200 chr3D 100.000 31 0 0 6176 6206 515551193 515551223 2.930000e-04 58.4
26 TraesCS5A01G313200 chr3D 94.595 37 1 1 6175 6210 575035167 575035131 1.000000e-03 56.5
27 TraesCS5A01G313200 chr4D 100.000 28 0 0 6182 6209 92654008 92654035 1.400000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G313200 chr5A 524240614 524248123 7509 True 13869.0 13869 100.000000 1 7510 1 chr5A.!!$R1 7509
1 TraesCS5A01G313200 chr5D 412360727 412368114 7387 True 2585.0 6711 93.397000 172 7510 4 chr5D.!!$R1 7338
2 TraesCS5A01G313200 chr5B 496521921 496529968 8047 True 1750.2 5005 91.397667 181 7510 6 chr5B.!!$R1 7329

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
486 489 0.035036 CGAGAGAGCATGGCATCCAT 59.965 55.0 0.00 0.00 46.37 3.41 F
926 936 0.035056 CCGAGTTTGGCTTCTCCCAT 60.035 55.0 0.00 0.00 34.21 4.00 F
1544 1565 0.106868 TGCTTGGCTCATCTGGATGG 60.107 55.0 10.22 3.50 39.24 3.51 F
3310 3360 0.179018 AGTTCGCAGCCTCAAAACCT 60.179 50.0 0.00 0.00 0.00 3.50 F
3632 3683 0.105964 TACGTGAGCAGCAGGTTTGT 59.894 50.0 0.00 0.00 42.56 2.83 F
4221 5081 0.512518 GCAAGATTTGGCAAAACGGC 59.487 50.0 17.70 18.08 41.67 5.68 F
5998 6907 0.105913 AAACCATTTGGACCCGGTGT 60.106 50.0 3.01 0.00 38.94 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1483 1504 0.392461 ATTAGTGAACCGCGCACCAT 60.392 50.0 8.75 2.64 36.95 3.55 R
2644 2687 0.107459 GCCCAGATGACAACTCCTCC 60.107 60.0 0.00 0.00 0.00 4.30 R
3538 3589 0.030504 ACTCGAGCTCGCATGAGATG 59.969 55.0 30.97 14.06 41.92 2.90 R
5072 5977 0.310854 CAGACAACCAGGCGAAAACC 59.689 55.0 0.00 0.00 0.00 3.27 R
5090 5995 1.384525 AGGTTGTTGCGTTAACTGCA 58.615 45.0 17.24 17.24 40.05 4.41 R
6199 7108 0.523519 GCAACTTGCAAGCTACTCCC 59.476 55.0 26.27 4.43 44.26 4.30 R
7122 8104 0.036577 GCTGCTCTCTCTTTGCCTGA 60.037 55.0 0.00 0.00 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.948608 TCAACGAGCTAGTCAAGTAGAG 57.051 45.455 0.00 0.00 0.00 2.43
22 23 3.690139 TCAACGAGCTAGTCAAGTAGAGG 59.310 47.826 0.00 0.00 0.00 3.69
23 24 2.018515 ACGAGCTAGTCAAGTAGAGGC 58.981 52.381 0.00 0.00 0.00 4.70
24 25 2.017782 CGAGCTAGTCAAGTAGAGGCA 58.982 52.381 0.00 0.00 0.00 4.75
25 26 2.621055 CGAGCTAGTCAAGTAGAGGCAT 59.379 50.000 0.00 0.00 0.00 4.40
26 27 3.815962 CGAGCTAGTCAAGTAGAGGCATA 59.184 47.826 0.00 0.00 0.00 3.14
27 28 4.319911 CGAGCTAGTCAAGTAGAGGCATAC 60.320 50.000 0.00 0.00 0.00 2.39
28 29 4.798882 AGCTAGTCAAGTAGAGGCATACT 58.201 43.478 0.00 0.00 37.61 2.12
29 30 5.942961 AGCTAGTCAAGTAGAGGCATACTA 58.057 41.667 3.23 0.00 34.90 1.82
30 31 6.001460 AGCTAGTCAAGTAGAGGCATACTAG 58.999 44.000 0.00 0.00 38.50 2.57
31 32 5.766174 GCTAGTCAAGTAGAGGCATACTAGT 59.234 44.000 0.00 0.00 38.02 2.57
32 33 6.293735 GCTAGTCAAGTAGAGGCATACTAGTG 60.294 46.154 5.39 0.00 38.02 2.74
33 34 5.756918 AGTCAAGTAGAGGCATACTAGTGA 58.243 41.667 5.39 2.59 34.90 3.41
34 35 5.591067 AGTCAAGTAGAGGCATACTAGTGAC 59.409 44.000 17.97 17.97 40.57 3.67
35 36 5.357314 GTCAAGTAGAGGCATACTAGTGACA 59.643 44.000 19.41 0.00 40.28 3.58
36 37 5.357314 TCAAGTAGAGGCATACTAGTGACAC 59.643 44.000 5.39 0.00 34.90 3.67
37 38 5.118729 AGTAGAGGCATACTAGTGACACT 57.881 43.478 13.68 13.68 34.21 3.55
38 39 5.127491 AGTAGAGGCATACTAGTGACACTC 58.873 45.833 12.39 8.31 34.21 3.51
39 40 4.243793 AGAGGCATACTAGTGACACTCT 57.756 45.455 12.39 10.40 0.00 3.24
40 41 3.951037 AGAGGCATACTAGTGACACTCTG 59.049 47.826 12.39 9.04 33.23 3.35
41 42 3.697045 GAGGCATACTAGTGACACTCTGT 59.303 47.826 12.39 14.35 0.00 3.41
42 43 4.090090 AGGCATACTAGTGACACTCTGTT 58.910 43.478 12.39 0.00 0.00 3.16
43 44 4.528596 AGGCATACTAGTGACACTCTGTTT 59.471 41.667 12.39 5.23 0.00 2.83
44 45 4.627467 GGCATACTAGTGACACTCTGTTTG 59.373 45.833 12.39 16.63 0.00 2.93
45 46 5.230942 GCATACTAGTGACACTCTGTTTGT 58.769 41.667 12.39 5.61 0.00 2.83
46 47 5.346281 GCATACTAGTGACACTCTGTTTGTC 59.654 44.000 12.39 9.81 43.22 3.18
47 48 6.682746 CATACTAGTGACACTCTGTTTGTCT 58.317 40.000 12.39 0.00 43.30 3.41
48 49 7.575155 GCATACTAGTGACACTCTGTTTGTCTA 60.575 40.741 12.39 0.00 43.30 2.59
49 50 6.902771 ACTAGTGACACTCTGTTTGTCTAT 57.097 37.500 12.39 0.00 43.30 1.98
50 51 6.682746 ACTAGTGACACTCTGTTTGTCTATG 58.317 40.000 12.39 0.00 43.30 2.23
51 52 5.537300 AGTGACACTCTGTTTGTCTATGT 57.463 39.130 1.07 0.00 43.30 2.29
52 53 6.650427 AGTGACACTCTGTTTGTCTATGTA 57.350 37.500 1.07 0.00 43.30 2.29
53 54 7.233389 AGTGACACTCTGTTTGTCTATGTAT 57.767 36.000 1.07 0.00 43.30 2.29
54 55 7.671302 AGTGACACTCTGTTTGTCTATGTATT 58.329 34.615 1.07 0.00 43.30 1.89
55 56 7.815068 AGTGACACTCTGTTTGTCTATGTATTC 59.185 37.037 1.07 0.00 43.30 1.75
56 57 7.598869 GTGACACTCTGTTTGTCTATGTATTCA 59.401 37.037 0.00 0.00 43.30 2.57
57 58 7.598869 TGACACTCTGTTTGTCTATGTATTCAC 59.401 37.037 11.01 0.00 43.30 3.18
58 59 7.441836 ACACTCTGTTTGTCTATGTATTCACA 58.558 34.615 0.00 0.00 39.52 3.58
59 60 7.385205 ACACTCTGTTTGTCTATGTATTCACAC 59.615 37.037 0.00 0.00 37.54 3.82
60 61 7.384932 CACTCTGTTTGTCTATGTATTCACACA 59.615 37.037 0.00 0.00 37.54 3.72
61 62 8.097038 ACTCTGTTTGTCTATGTATTCACACAT 58.903 33.333 0.00 0.00 41.88 3.21
62 63 8.255394 TCTGTTTGTCTATGTATTCACACATG 57.745 34.615 0.00 0.00 39.46 3.21
63 64 7.877612 TCTGTTTGTCTATGTATTCACACATGT 59.122 33.333 0.00 0.00 39.46 3.21
64 65 9.150348 CTGTTTGTCTATGTATTCACACATGTA 57.850 33.333 0.00 0.00 39.46 2.29
65 66 9.665719 TGTTTGTCTATGTATTCACACATGTAT 57.334 29.630 0.00 0.00 39.46 2.29
157 158 8.637196 AATAACTTTATTATTGCCTCTAGGGC 57.363 34.615 13.60 13.60 44.71 5.19
169 170 4.982241 CCTCTAGGGCATATTTCCTTCA 57.018 45.455 0.00 0.00 34.75 3.02
170 171 4.646572 CCTCTAGGGCATATTTCCTTCAC 58.353 47.826 0.00 0.00 34.75 3.18
194 195 0.811915 ATCGTCCTCTTCACTGGTCG 59.188 55.000 0.00 0.00 36.51 4.79
195 196 0.536687 TCGTCCTCTTCACTGGTCGT 60.537 55.000 0.00 0.00 36.55 4.34
198 199 1.444553 CCTCTTCACTGGTCGTCGC 60.445 63.158 0.00 0.00 0.00 5.19
200 201 2.142357 CTCTTCACTGGTCGTCGCCA 62.142 60.000 7.92 7.92 36.97 5.69
211 212 0.883153 TCGTCGCCAGTTACTAGCAA 59.117 50.000 3.49 0.00 0.00 3.91
215 216 2.666994 GTCGCCAGTTACTAGCAAAGAC 59.333 50.000 3.49 0.00 0.00 3.01
241 242 4.760047 CCCCTCAACACGCTCCGG 62.760 72.222 0.00 0.00 0.00 5.14
244 245 2.357517 CTCAACACGCTCCGGCTT 60.358 61.111 0.00 0.00 36.09 4.35
257 258 4.443266 GGCTTCGAGCTCGCCAGT 62.443 66.667 30.97 0.00 43.25 4.00
293 294 2.505777 CTCGCCGTGACTCTGCAG 60.506 66.667 7.63 7.63 0.00 4.41
305 306 4.476410 CTGCAGCGTCGTAGCCGA 62.476 66.667 0.00 0.00 41.73 5.54
403 406 1.745115 CATGTCATCCACGCCGGTT 60.745 57.895 1.90 0.00 35.57 4.44
411 414 1.377463 CCACGCCGGTTAATCCCAA 60.377 57.895 1.90 0.00 0.00 4.12
419 422 2.634600 CGGTTAATCCCAACATCCGAA 58.365 47.619 0.00 0.00 38.96 4.30
423 426 1.448985 AATCCCAACATCCGAACGTG 58.551 50.000 0.00 0.00 0.00 4.49
424 427 0.323629 ATCCCAACATCCGAACGTGT 59.676 50.000 0.00 0.00 0.00 4.49
425 428 0.320073 TCCCAACATCCGAACGTGTC 60.320 55.000 0.00 0.00 0.00 3.67
433 436 2.544359 CGAACGTGTCGGTTGCAG 59.456 61.111 10.88 0.00 46.45 4.41
434 437 2.935955 GAACGTGTCGGTTGCAGG 59.064 61.111 0.00 0.00 0.00 4.85
435 438 1.593209 GAACGTGTCGGTTGCAGGA 60.593 57.895 0.00 0.00 0.00 3.86
436 439 0.949105 GAACGTGTCGGTTGCAGGAT 60.949 55.000 0.00 0.00 0.00 3.24
437 440 0.949105 AACGTGTCGGTTGCAGGATC 60.949 55.000 0.00 0.00 0.00 3.36
438 441 2.100631 CGTGTCGGTTGCAGGATCC 61.101 63.158 2.48 2.48 0.00 3.36
439 442 2.100631 GTGTCGGTTGCAGGATCCG 61.101 63.158 5.98 5.09 44.76 4.18
440 443 2.511600 GTCGGTTGCAGGATCCGG 60.512 66.667 7.64 7.64 43.75 5.14
441 444 4.467084 TCGGTTGCAGGATCCGGC 62.467 66.667 27.79 27.79 43.75 6.13
442 445 4.473520 CGGTTGCAGGATCCGGCT 62.474 66.667 32.52 1.91 40.49 5.52
443 446 2.825836 GGTTGCAGGATCCGGCTG 60.826 66.667 32.52 15.80 37.97 4.85
444 447 3.512516 GTTGCAGGATCCGGCTGC 61.513 66.667 32.52 24.25 43.67 5.25
481 484 2.046285 TCGACGAGAGAGCATGGCA 61.046 57.895 0.00 0.00 0.00 4.92
484 487 0.599728 GACGAGAGAGCATGGCATCC 60.600 60.000 0.00 0.00 0.00 3.51
486 489 0.035036 CGAGAGAGCATGGCATCCAT 59.965 55.000 0.00 0.00 46.37 3.41
494 497 1.479323 GCATGGCATCCATTGTCTTGT 59.521 47.619 0.00 0.00 42.23 3.16
500 503 3.539604 GCATCCATTGTCTTGTAGCTCT 58.460 45.455 0.00 0.00 0.00 4.09
502 505 3.895232 TCCATTGTCTTGTAGCTCTCC 57.105 47.619 0.00 0.00 0.00 3.71
516 525 0.456995 CTCTCCGACTCGAAGGTTGC 60.457 60.000 0.00 0.00 0.00 4.17
526 535 3.553095 GAAGGTTGCAGCTCCCGGT 62.553 63.158 0.00 0.00 0.00 5.28
549 558 1.269726 CGCCAGTTCCAGCAAATTGTT 60.270 47.619 0.00 0.00 0.00 2.83
551 560 2.483538 GCCAGTTCCAGCAAATTGTTGT 60.484 45.455 8.90 0.00 37.06 3.32
596 605 2.304761 TCGGTCCTAGCAAAACCATCTT 59.695 45.455 0.00 0.00 32.35 2.40
606 615 0.250553 AAACCATCTTCCGGTCGCAA 60.251 50.000 0.00 0.00 34.99 4.85
625 634 3.883744 CTTCGCCAGTGCCGGTTCT 62.884 63.158 1.90 0.00 0.00 3.01
677 686 2.938956 AAGGATATGGAAGGAAGCGG 57.061 50.000 0.00 0.00 0.00 5.52
847 857 1.280457 CCCTAGGAAAGCAGTCACCT 58.720 55.000 11.48 0.00 36.65 4.00
854 864 2.417558 AAAGCAGTCACCTCTGGCCC 62.418 60.000 0.00 0.00 36.12 5.80
926 936 0.035056 CCGAGTTTGGCTTCTCCCAT 60.035 55.000 0.00 0.00 34.21 4.00
1126 1139 0.693049 TCCTCTTCCTGCCCAGTTTC 59.307 55.000 0.00 0.00 0.00 2.78
1127 1140 0.322906 CCTCTTCCTGCCCAGTTTCC 60.323 60.000 0.00 0.00 0.00 3.13
1225 1238 2.269172 GCTCGGTGCTAGGTTTTAGTC 58.731 52.381 0.00 0.00 38.95 2.59
1285 1298 0.178975 TGAGGTGGCCCGATTTGTTT 60.179 50.000 0.00 0.00 35.12 2.83
1295 1308 1.469079 CCGATTTGTTTGCGAATCCCC 60.469 52.381 0.00 0.00 40.68 4.81
1353 1366 2.644212 CCTCAGCAGTCTCGTGGCT 61.644 63.158 0.00 0.00 38.70 4.75
1430 1445 3.440127 CCAATTTGGTCACATAACCCCT 58.560 45.455 7.31 0.00 38.65 4.79
1483 1504 3.101437 TGGCGGTCTCTTAGTTGGAATA 58.899 45.455 0.00 0.00 0.00 1.75
1491 1512 3.202906 TCTTAGTTGGAATATGGTGCGC 58.797 45.455 0.00 0.00 0.00 6.09
1506 1527 3.125316 GGTGCGCGGTTCACTAATAATA 58.875 45.455 8.83 0.00 34.97 0.98
1507 1528 3.556775 GGTGCGCGGTTCACTAATAATAA 59.443 43.478 8.83 0.00 34.97 1.40
1508 1529 4.212636 GGTGCGCGGTTCACTAATAATAAT 59.787 41.667 8.83 0.00 34.97 1.28
1509 1530 5.371629 GTGCGCGGTTCACTAATAATAATC 58.628 41.667 8.83 0.00 0.00 1.75
1510 1531 5.176958 GTGCGCGGTTCACTAATAATAATCT 59.823 40.000 8.83 0.00 0.00 2.40
1544 1565 0.106868 TGCTTGGCTCATCTGGATGG 60.107 55.000 10.22 3.50 39.24 3.51
1687 1726 3.386768 TCCAGTTGTGCTAGACTTGAC 57.613 47.619 0.00 0.00 0.00 3.18
1690 1729 3.681897 CCAGTTGTGCTAGACTTGACATC 59.318 47.826 0.00 0.00 0.00 3.06
1708 1747 6.591935 TGACATCTCCAAAGTTTAACTCAGT 58.408 36.000 0.00 0.00 0.00 3.41
1713 1752 4.523083 TCCAAAGTTTAACTCAGTGCACT 58.477 39.130 15.25 15.25 0.00 4.40
1715 1754 3.971032 AAGTTTAACTCAGTGCACTGC 57.029 42.857 36.76 22.72 43.46 4.40
1727 1766 1.236616 TGCACTGCACACATACCAGC 61.237 55.000 0.00 0.00 31.71 4.85
1785 1824 4.371624 TCTGAAATCACCCTGTGAATGT 57.628 40.909 0.46 0.00 45.96 2.71
1998 2041 4.959210 ACTGAAGGAGATAGCACAGTGTAT 59.041 41.667 1.61 0.00 37.24 2.29
2005 2048 8.478775 AGGAGATAGCACAGTGTATGTATTTA 57.521 34.615 1.61 0.00 41.41 1.40
2084 2127 9.830975 AATATTGCTTGTTAGTTTGGTTTTTCT 57.169 25.926 0.00 0.00 0.00 2.52
2085 2128 6.959671 TTGCTTGTTAGTTTGGTTTTTCTG 57.040 33.333 0.00 0.00 0.00 3.02
2087 2130 6.692486 TGCTTGTTAGTTTGGTTTTTCTGAA 58.308 32.000 0.00 0.00 0.00 3.02
2088 2131 6.588373 TGCTTGTTAGTTTGGTTTTTCTGAAC 59.412 34.615 0.00 0.00 0.00 3.18
2383 2426 5.587043 ACTTGATAACACGTTTCAAAGACCA 59.413 36.000 0.00 0.00 0.00 4.02
2511 2554 0.468400 GGTCCGCACCCTAGAGAGAT 60.468 60.000 0.00 0.00 36.54 2.75
2514 2557 2.490115 GTCCGCACCCTAGAGAGATATG 59.510 54.545 0.00 0.00 0.00 1.78
2542 2585 8.801715 ATGAAGTTAATGACAACAACATTCAC 57.198 30.769 0.00 0.00 38.61 3.18
2620 2663 4.282449 TCTTATGGACCAGAAGTTCGTGAA 59.718 41.667 24.53 4.66 34.71 3.18
2644 2687 9.268255 GAAACTATCATAATAGATGACGACGAG 57.732 37.037 0.00 0.00 38.61 4.18
2699 2742 2.607282 GCTAGTATCCGTAGCAATGCGT 60.607 50.000 0.00 0.00 42.21 5.24
2701 2744 1.407618 AGTATCCGTAGCAATGCGTCA 59.592 47.619 0.00 0.00 0.00 4.35
2710 2753 1.277495 GCAATGCGTCACAGCCAAAC 61.277 55.000 0.00 0.00 36.02 2.93
2734 2777 1.673665 GCCAACTGCTCCTCCACTG 60.674 63.158 0.00 0.00 36.87 3.66
2821 2864 2.165998 GAGGCTGAAGAACTGGCAAAT 58.834 47.619 0.00 0.00 43.35 2.32
2829 2872 4.216257 TGAAGAACTGGCAAATGTAAGCTC 59.784 41.667 0.00 0.00 0.00 4.09
2831 2874 4.006319 AGAACTGGCAAATGTAAGCTCTC 58.994 43.478 0.00 0.00 0.00 3.20
2832 2875 3.710209 ACTGGCAAATGTAAGCTCTCT 57.290 42.857 0.00 0.00 0.00 3.10
2833 2876 3.604582 ACTGGCAAATGTAAGCTCTCTC 58.395 45.455 0.00 0.00 0.00 3.20
2834 2877 3.262915 ACTGGCAAATGTAAGCTCTCTCT 59.737 43.478 0.00 0.00 0.00 3.10
2835 2878 3.866651 TGGCAAATGTAAGCTCTCTCTC 58.133 45.455 0.00 0.00 0.00 3.20
2841 2891 6.498304 CAAATGTAAGCTCTCTCTCTCTCTC 58.502 44.000 0.00 0.00 0.00 3.20
2847 2897 3.640967 AGCTCTCTCTCTCTCTCTCTCTC 59.359 52.174 0.00 0.00 0.00 3.20
2848 2898 3.640967 GCTCTCTCTCTCTCTCTCTCTCT 59.359 52.174 0.00 0.00 0.00 3.10
2866 2916 3.792114 TCTCTCCACAGGGATAGGTTAGA 59.208 47.826 0.00 0.00 43.91 2.10
2868 2918 4.287552 TCTCCACAGGGATAGGTTAGAAC 58.712 47.826 0.00 0.00 43.91 3.01
2876 2926 3.132467 GGGATAGGTTAGAACGAGCTTGT 59.868 47.826 0.00 0.00 0.00 3.16
2877 2927 4.361420 GGATAGGTTAGAACGAGCTTGTC 58.639 47.826 7.17 1.29 0.00 3.18
2936 2986 0.319900 GCAGAGCAAGAACGGACTCA 60.320 55.000 0.00 0.00 0.00 3.41
2943 2993 3.935203 AGCAAGAACGGACTCAACATATG 59.065 43.478 0.00 0.00 0.00 1.78
2966 3016 4.335594 GGGTGGAATAAACTTGGAAGATCG 59.664 45.833 0.00 0.00 0.00 3.69
2990 3040 7.278646 TCGTTTATCTGATGAAGACATGGAAAG 59.721 37.037 0.00 0.00 37.88 2.62
3022 3072 7.861629 TGGAACAGTGAGAAGGTGAATATTAT 58.138 34.615 0.00 0.00 0.00 1.28
3023 3073 8.328758 TGGAACAGTGAGAAGGTGAATATTATT 58.671 33.333 0.00 0.00 0.00 1.40
3048 3098 1.836802 ACCCTCTTGCTCTTCATCCTC 59.163 52.381 0.00 0.00 0.00 3.71
3052 3102 1.209019 TCTTGCTCTTCATCCTCAGGC 59.791 52.381 0.00 0.00 0.00 4.85
3081 3131 2.738846 CTGCGGTAGGCTAATAGCAATG 59.261 50.000 14.76 0.23 44.75 2.82
3082 3132 1.464997 GCGGTAGGCTAATAGCAATGC 59.535 52.381 14.76 0.00 44.75 3.56
3085 3135 3.753272 CGGTAGGCTAATAGCAATGCATT 59.247 43.478 14.76 5.99 44.75 3.56
3092 3142 8.597662 AGGCTAATAGCAATGCATTTATTTTG 57.402 30.769 17.36 13.02 44.75 2.44
3135 3185 3.654273 CAAGGATTAGGTACAGGGAGGA 58.346 50.000 0.00 0.00 0.00 3.71
3179 3229 4.262292 GCAGATGAAGAGAGCTCAGATGAT 60.262 45.833 17.77 1.72 0.00 2.45
3201 3251 4.748892 TGAGATCGAGGATGTTGAAGAAC 58.251 43.478 0.00 0.00 0.00 3.01
3237 3287 1.144057 CGTTCTAGGCGCATCCCTT 59.856 57.895 10.83 0.00 36.41 3.95
3310 3360 0.179018 AGTTCGCAGCCTCAAAACCT 60.179 50.000 0.00 0.00 0.00 3.50
3316 3366 1.888512 GCAGCCTCAAAACCTTGATCA 59.111 47.619 0.00 0.00 40.78 2.92
3317 3367 2.494870 GCAGCCTCAAAACCTTGATCAT 59.505 45.455 0.00 0.00 40.78 2.45
3359 3409 2.975489 CCCATCAGAGGTATTGTAGCCT 59.025 50.000 0.00 0.00 37.91 4.58
3403 3453 6.963049 AAGCAGTTAACGGTATTACTTCAG 57.037 37.500 7.58 0.00 0.00 3.02
3404 3454 4.868734 AGCAGTTAACGGTATTACTTCAGC 59.131 41.667 7.58 0.00 0.00 4.26
3405 3455 4.033702 GCAGTTAACGGTATTACTTCAGCC 59.966 45.833 7.58 0.00 0.00 4.85
3406 3456 5.416947 CAGTTAACGGTATTACTTCAGCCT 58.583 41.667 0.00 0.00 0.00 4.58
3407 3457 5.519206 CAGTTAACGGTATTACTTCAGCCTC 59.481 44.000 0.00 0.00 0.00 4.70
3408 3458 5.186409 AGTTAACGGTATTACTTCAGCCTCA 59.814 40.000 0.00 0.00 0.00 3.86
3410 3460 4.755266 ACGGTATTACTTCAGCCTCATT 57.245 40.909 0.00 0.00 0.00 2.57
3411 3461 4.442706 ACGGTATTACTTCAGCCTCATTG 58.557 43.478 0.00 0.00 0.00 2.82
3412 3462 3.248602 CGGTATTACTTCAGCCTCATTGC 59.751 47.826 0.00 0.00 0.00 3.56
3413 3463 4.455606 GGTATTACTTCAGCCTCATTGCT 58.544 43.478 0.00 0.00 44.00 3.91
3414 3464 4.513318 GGTATTACTTCAGCCTCATTGCTC 59.487 45.833 0.00 0.00 40.32 4.26
3415 3465 3.701205 TTACTTCAGCCTCATTGCTCA 57.299 42.857 0.00 0.00 40.32 4.26
3436 3487 6.460123 GCTCACACAATTCTTCTTCTGGAAAA 60.460 38.462 0.00 0.00 33.07 2.29
3530 3581 5.104151 TCCTGAAGCACCAACATATCCATTA 60.104 40.000 0.00 0.00 0.00 1.90
3531 3582 5.771666 CCTGAAGCACCAACATATCCATTAT 59.228 40.000 0.00 0.00 0.00 1.28
3532 3583 6.072286 CCTGAAGCACCAACATATCCATTATC 60.072 42.308 0.00 0.00 0.00 1.75
3533 3584 5.769662 TGAAGCACCAACATATCCATTATCC 59.230 40.000 0.00 0.00 0.00 2.59
3534 3585 4.326826 AGCACCAACATATCCATTATCCG 58.673 43.478 0.00 0.00 0.00 4.18
3535 3586 4.072131 GCACCAACATATCCATTATCCGT 58.928 43.478 0.00 0.00 0.00 4.69
3536 3587 4.518970 GCACCAACATATCCATTATCCGTT 59.481 41.667 0.00 0.00 0.00 4.44
3537 3588 5.334879 GCACCAACATATCCATTATCCGTTC 60.335 44.000 0.00 0.00 0.00 3.95
3538 3589 5.181245 CACCAACATATCCATTATCCGTTCC 59.819 44.000 0.00 0.00 0.00 3.62
3594 3645 0.603975 GCACTCTCCACCACCAGAAC 60.604 60.000 0.00 0.00 0.00 3.01
3632 3683 0.105964 TACGTGAGCAGCAGGTTTGT 59.894 50.000 0.00 0.00 42.56 2.83
3634 3685 0.512952 CGTGAGCAGCAGGTTTGTAC 59.487 55.000 0.00 0.00 0.00 2.90
3642 3693 2.880890 CAGCAGGTTTGTACTTGAAGCT 59.119 45.455 0.00 0.00 33.45 3.74
3647 3698 5.858581 GCAGGTTTGTACTTGAAGCTTTATG 59.141 40.000 0.00 0.89 33.45 1.90
3777 3828 2.495669 ACTCTACAAGAAGCTGAGCTCC 59.504 50.000 7.72 0.00 38.25 4.70
3797 3848 1.303155 ACTGCTGGAAGAAGCTGCC 60.303 57.895 0.00 0.00 46.76 4.85
3826 3877 4.641989 AGAAGCTGCTCTTGAGAAACAAAA 59.358 37.500 1.00 0.00 38.08 2.44
3844 3895 0.610687 AAGCAAGAGGAGGAGGAACG 59.389 55.000 0.00 0.00 0.00 3.95
3857 3908 0.802494 AGGAACGGCGTAAAATGCAG 59.198 50.000 15.20 0.00 0.00 4.41
3887 3938 2.972713 AGAGGTACCTTTCTGTTGCAGA 59.027 45.455 17.53 0.00 38.87 4.26
3894 3945 6.374333 GGTACCTTTCTGTTGCAGATAATTCA 59.626 38.462 4.06 0.00 40.39 2.57
3959 4066 9.549078 TGTGAGTAGTAGATAACTAGATCACTG 57.451 37.037 20.23 0.00 46.70 3.66
3984 4091 8.511321 TGCTGTGATCATACGAAACTTATTTTT 58.489 29.630 0.00 0.00 0.00 1.94
4057 4917 8.828751 ACAGTGGTCTTATTATAGGTTTGGTTA 58.171 33.333 0.00 0.00 0.00 2.85
4058 4918 9.675464 CAGTGGTCTTATTATAGGTTTGGTTAA 57.325 33.333 0.00 0.00 0.00 2.01
4118 4978 3.643199 AAACTTTGGGCATGTTTGGTT 57.357 38.095 0.00 0.00 33.36 3.67
4127 4987 2.754552 GGCATGTTTGGTTGATAGCTGA 59.245 45.455 0.00 0.00 0.00 4.26
4129 4989 4.142093 GGCATGTTTGGTTGATAGCTGAAT 60.142 41.667 0.00 0.00 0.00 2.57
4133 4993 6.258230 TGTTTGGTTGATAGCTGAATCTTG 57.742 37.500 0.00 0.00 0.00 3.02
4144 5004 7.826252 TGATAGCTGAATCTTGCTAGACTTTTT 59.174 33.333 0.00 0.00 43.74 1.94
4152 5012 4.273480 TCTTGCTAGACTTTTTGTGCTGAC 59.727 41.667 0.00 0.00 0.00 3.51
4155 5015 3.058639 GCTAGACTTTTTGTGCTGACCTG 60.059 47.826 0.00 0.00 0.00 4.00
4158 5018 1.750778 ACTTTTTGTGCTGACCTGTGG 59.249 47.619 0.00 0.00 0.00 4.17
4221 5081 0.512518 GCAAGATTTGGCAAAACGGC 59.487 50.000 17.70 18.08 41.67 5.68
4327 5187 1.206849 CACACCCTTGGCAAAGTTTGT 59.793 47.619 16.70 0.00 30.36 2.83
4394 5255 2.535574 GCTCTTTGCTTTTGTTGTTCCG 59.464 45.455 0.00 0.00 38.95 4.30
4395 5256 3.769536 CTCTTTGCTTTTGTTGTTCCGT 58.230 40.909 0.00 0.00 0.00 4.69
4396 5257 4.173256 CTCTTTGCTTTTGTTGTTCCGTT 58.827 39.130 0.00 0.00 0.00 4.44
4397 5258 3.923461 TCTTTGCTTTTGTTGTTCCGTTG 59.077 39.130 0.00 0.00 0.00 4.10
4398 5259 3.577649 TTGCTTTTGTTGTTCCGTTGA 57.422 38.095 0.00 0.00 0.00 3.18
4399 5260 3.143807 TGCTTTTGTTGTTCCGTTGAG 57.856 42.857 0.00 0.00 0.00 3.02
4400 5261 2.750166 TGCTTTTGTTGTTCCGTTGAGA 59.250 40.909 0.00 0.00 0.00 3.27
4402 5263 3.181500 GCTTTTGTTGTTCCGTTGAGACT 60.181 43.478 0.00 0.00 0.00 3.24
4446 5307 8.995027 ATTTATCATAAGTTCATTACCTGGCA 57.005 30.769 0.00 0.00 0.00 4.92
4659 5520 5.825679 TCAAGGTAAGCTGCTTTTGAACTTA 59.174 36.000 21.29 3.92 0.00 2.24
4661 5522 6.901081 AGGTAAGCTGCTTTTGAACTTAAT 57.099 33.333 21.29 0.00 0.00 1.40
4700 5563 3.181429 ACCTGCCAGATTCCAGAAAAGAA 60.181 43.478 0.00 0.00 0.00 2.52
4725 5588 5.652452 GGGTTCATTTATACTTGCCTCTTGT 59.348 40.000 0.00 0.00 0.00 3.16
4735 5598 5.483685 ACTTGCCTCTTGTCACTAATACA 57.516 39.130 0.00 0.00 0.00 2.29
4785 5648 6.016276 GCAGTCCCTTTTTGATTTCTTAGACA 60.016 38.462 0.00 0.00 0.00 3.41
4885 5750 6.019108 TCATATGCATACTCCCATGTAGAGT 58.981 40.000 8.99 17.05 46.22 3.24
4886 5751 6.498303 TCATATGCATACTCCCATGTAGAGTT 59.502 38.462 17.83 5.56 41.87 3.01
4889 5754 5.914033 TGCATACTCCCATGTAGAGTTAAC 58.086 41.667 17.83 0.00 41.87 2.01
4931 5796 7.275920 AGTGCAACCTAGTATTCTTCCTTATG 58.724 38.462 0.00 0.00 37.80 1.90
4964 5864 4.653555 CACTAGCAGTCACGTGCA 57.346 55.556 11.67 0.00 46.60 4.57
5002 5902 4.216411 TCTGAGCTACCCAAACCAATAC 57.784 45.455 0.00 0.00 0.00 1.89
5058 5958 1.243342 TTGTCGGCAAGAATGGGCTG 61.243 55.000 0.00 0.00 37.75 4.85
5072 5977 2.203209 GCTGGGCCCTATGTTCCG 60.203 66.667 25.70 2.07 0.00 4.30
5090 5995 1.164041 CGGTTTTCGCCTGGTTGTCT 61.164 55.000 0.00 0.00 0.00 3.41
5213 6118 4.678287 CAGATTAGTTTTGCTTGCTGTGTG 59.322 41.667 0.00 0.00 0.00 3.82
5300 6206 4.653801 TGCTAGTATTCCTTGACCTATGCA 59.346 41.667 0.00 0.00 0.00 3.96
5301 6207 5.130311 TGCTAGTATTCCTTGACCTATGCAA 59.870 40.000 0.00 0.00 0.00 4.08
5302 6208 5.698545 GCTAGTATTCCTTGACCTATGCAAG 59.301 44.000 0.00 0.00 41.77 4.01
5303 6209 5.957771 AGTATTCCTTGACCTATGCAAGA 57.042 39.130 0.00 0.00 44.16 3.02
5304 6210 6.313519 AGTATTCCTTGACCTATGCAAGAA 57.686 37.500 0.00 0.00 44.16 2.52
5444 6353 1.873698 TGGTGTCTTTGCGTTCCTAC 58.126 50.000 0.00 0.00 0.00 3.18
5447 6356 2.812011 GGTGTCTTTGCGTTCCTACAAT 59.188 45.455 0.00 0.00 0.00 2.71
5521 6430 6.707440 TGAACATTTCAAGTTACATGGTGT 57.293 33.333 0.00 0.00 36.59 4.16
5601 6510 7.453393 AGAGAAAGGATTGACAGTGATTGTAA 58.547 34.615 0.00 0.00 41.05 2.41
5619 6528 5.483685 TGTAAGAGGATGTATATGTGCCC 57.516 43.478 0.00 0.00 0.00 5.36
5642 6551 3.386078 TGCCAACAAGTTTTATGCTTCCA 59.614 39.130 0.00 0.00 0.00 3.53
5731 6640 1.747709 CTATTTGCTGCTCTGGCTGT 58.252 50.000 0.00 0.00 39.19 4.40
5744 6653 1.736126 CTGGCTGTTATGTGCTGTCAG 59.264 52.381 0.00 0.00 32.81 3.51
5760 6669 3.192944 TGTCAGGGGGAGATCATTCTTT 58.807 45.455 0.00 0.00 30.30 2.52
5761 6670 3.200825 TGTCAGGGGGAGATCATTCTTTC 59.799 47.826 0.00 0.00 30.30 2.62
5786 6695 1.970639 GCAGACTGCAGACTGGAGA 59.029 57.895 35.74 0.00 44.26 3.71
5813 6722 0.861837 CTCTGGCACTGTTCGTGTTC 59.138 55.000 0.00 0.00 45.57 3.18
5867 6776 2.673368 GTCCACGACAGATGTTTGATCC 59.327 50.000 0.00 0.00 32.09 3.36
5920 6829 5.675684 TCTGCCAGTTGATTGTAGTATCA 57.324 39.130 0.00 0.00 32.87 2.15
5973 6882 2.435586 GACCGCACTGAGCAGCAT 60.436 61.111 0.00 0.00 46.13 3.79
5998 6907 0.105913 AAACCATTTGGACCCGGTGT 60.106 50.000 3.01 0.00 38.94 4.16
6050 6959 8.970020 TGCATTTTATAAGTTCATCTGTTCCAT 58.030 29.630 0.00 0.00 0.00 3.41
6062 6971 9.593134 GTTCATCTGTTCCATAGACCATATATC 57.407 37.037 0.00 0.00 0.00 1.63
6079 6988 8.925338 ACCATATATCTCCGTCTTTTTACTCTT 58.075 33.333 0.00 0.00 0.00 2.85
6085 6994 7.223260 TCTCCGTCTTTTTACTCTTGATACA 57.777 36.000 0.00 0.00 0.00 2.29
6146 7055 3.064900 ACTCCCTCTGTCTCAAAATGC 57.935 47.619 0.00 0.00 0.00 3.56
6148 7057 3.009916 ACTCCCTCTGTCTCAAAATGCAT 59.990 43.478 0.00 0.00 0.00 3.96
6151 7060 3.760151 CCCTCTGTCTCAAAATGCATGAA 59.240 43.478 0.00 0.00 0.00 2.57
6152 7061 4.142447 CCCTCTGTCTCAAAATGCATGAAG 60.142 45.833 0.00 0.00 0.00 3.02
6153 7062 4.458295 CCTCTGTCTCAAAATGCATGAAGT 59.542 41.667 0.00 0.00 0.00 3.01
6154 7063 5.048224 CCTCTGTCTCAAAATGCATGAAGTT 60.048 40.000 0.00 0.00 0.00 2.66
6157 7066 7.267128 TCTGTCTCAAAATGCATGAAGTTTTT 58.733 30.769 0.00 0.00 0.00 1.94
6158 7067 7.223193 TCTGTCTCAAAATGCATGAAGTTTTTG 59.777 33.333 12.59 12.59 39.33 2.44
6159 7068 7.040494 TGTCTCAAAATGCATGAAGTTTTTGA 58.960 30.769 17.92 17.92 42.58 2.69
6160 7069 7.548427 TGTCTCAAAATGCATGAAGTTTTTGAA 59.452 29.630 18.93 10.88 43.53 2.69
6161 7070 8.389603 GTCTCAAAATGCATGAAGTTTTTGAAA 58.610 29.630 18.93 8.38 43.53 2.69
6162 7071 8.389603 TCTCAAAATGCATGAAGTTTTTGAAAC 58.610 29.630 18.93 0.00 43.53 2.78
6163 7072 7.178741 TCAAAATGCATGAAGTTTTTGAAACG 58.821 30.769 17.09 0.00 42.13 3.60
6164 7073 6.660887 AAATGCATGAAGTTTTTGAAACGT 57.339 29.167 0.00 0.00 0.00 3.99
6165 7074 5.888412 ATGCATGAAGTTTTTGAAACGTC 57.112 34.783 0.00 10.99 0.00 4.34
6166 7075 4.992688 TGCATGAAGTTTTTGAAACGTCT 58.007 34.783 16.35 4.39 31.46 4.18
6167 7076 5.406649 TGCATGAAGTTTTTGAAACGTCTT 58.593 33.333 16.35 10.03 31.46 3.01
6168 7077 6.556212 TGCATGAAGTTTTTGAAACGTCTTA 58.444 32.000 16.35 2.90 31.46 2.10
6169 7078 6.470877 TGCATGAAGTTTTTGAAACGTCTTAC 59.529 34.615 16.35 8.74 31.46 2.34
6170 7079 6.470877 GCATGAAGTTTTTGAAACGTCTTACA 59.529 34.615 16.35 2.58 31.46 2.41
6171 7080 7.167468 GCATGAAGTTTTTGAAACGTCTTACAT 59.833 33.333 16.35 4.31 31.46 2.29
6172 7081 9.019764 CATGAAGTTTTTGAAACGTCTTACATT 57.980 29.630 16.35 0.00 31.46 2.71
6173 7082 8.973835 TGAAGTTTTTGAAACGTCTTACATTT 57.026 26.923 16.35 0.00 31.46 2.32
6180 7089 6.956393 TGAAACGTCTTACATTTAAAACGC 57.044 33.333 7.56 0.00 33.68 4.84
6181 7090 5.908499 TGAAACGTCTTACATTTAAAACGCC 59.092 36.000 7.56 0.36 33.68 5.68
6182 7091 5.678132 AACGTCTTACATTTAAAACGCCT 57.322 34.783 7.56 0.00 33.68 5.52
6183 7092 5.678132 ACGTCTTACATTTAAAACGCCTT 57.322 34.783 7.56 0.00 33.68 4.35
6184 7093 6.783892 ACGTCTTACATTTAAAACGCCTTA 57.216 33.333 7.56 0.00 33.68 2.69
6185 7094 6.593072 ACGTCTTACATTTAAAACGCCTTAC 58.407 36.000 7.56 0.00 33.68 2.34
6186 7095 6.202570 ACGTCTTACATTTAAAACGCCTTACA 59.797 34.615 7.56 0.00 33.68 2.41
6187 7096 7.095102 ACGTCTTACATTTAAAACGCCTTACAT 60.095 33.333 7.56 0.00 33.68 2.29
6188 7097 7.747357 CGTCTTACATTTAAAACGCCTTACATT 59.253 33.333 0.00 0.00 0.00 2.71
6189 7098 9.401873 GTCTTACATTTAAAACGCCTTACATTT 57.598 29.630 0.00 0.00 0.00 2.32
6190 7099 9.968870 TCTTACATTTAAAACGCCTTACATTTT 57.031 25.926 0.00 0.00 0.00 1.82
6192 7101 9.745880 TTACATTTAAAACGCCTTACATTTTGA 57.254 25.926 0.00 0.00 0.00 2.69
6193 7102 8.293114 ACATTTAAAACGCCTTACATTTTGAG 57.707 30.769 0.00 0.00 0.00 3.02
6194 7103 8.138712 ACATTTAAAACGCCTTACATTTTGAGA 58.861 29.630 0.00 0.00 0.00 3.27
6195 7104 7.917720 TTTAAAACGCCTTACATTTTGAGAC 57.082 32.000 0.00 0.00 0.00 3.36
6196 7105 5.508200 AAAACGCCTTACATTTTGAGACA 57.492 34.783 0.00 0.00 0.00 3.41
6197 7106 4.749245 AACGCCTTACATTTTGAGACAG 57.251 40.909 0.00 0.00 0.00 3.51
6198 7107 4.002906 ACGCCTTACATTTTGAGACAGA 57.997 40.909 0.00 0.00 0.00 3.41
6199 7108 3.997021 ACGCCTTACATTTTGAGACAGAG 59.003 43.478 0.00 0.00 0.00 3.35
6200 7109 3.372206 CGCCTTACATTTTGAGACAGAGG 59.628 47.826 0.00 0.00 0.00 3.69
6201 7110 3.691609 GCCTTACATTTTGAGACAGAGGG 59.308 47.826 0.00 0.00 0.00 4.30
6202 7111 4.565652 GCCTTACATTTTGAGACAGAGGGA 60.566 45.833 0.00 0.00 0.00 4.20
6203 7112 5.181748 CCTTACATTTTGAGACAGAGGGAG 58.818 45.833 0.00 0.00 0.00 4.30
6204 7113 5.280215 CCTTACATTTTGAGACAGAGGGAGT 60.280 44.000 0.00 0.00 0.00 3.85
6205 7114 6.070767 CCTTACATTTTGAGACAGAGGGAGTA 60.071 42.308 0.00 0.00 0.00 2.59
6206 7115 5.413309 ACATTTTGAGACAGAGGGAGTAG 57.587 43.478 0.00 0.00 0.00 2.57
6207 7116 3.963428 TTTTGAGACAGAGGGAGTAGC 57.037 47.619 0.00 0.00 0.00 3.58
6208 7117 2.909504 TTGAGACAGAGGGAGTAGCT 57.090 50.000 0.00 0.00 0.00 3.32
6209 7118 2.909504 TGAGACAGAGGGAGTAGCTT 57.090 50.000 0.00 0.00 0.00 3.74
6210 7119 2.451490 TGAGACAGAGGGAGTAGCTTG 58.549 52.381 0.00 0.00 0.00 4.01
6211 7120 1.136110 GAGACAGAGGGAGTAGCTTGC 59.864 57.143 0.00 0.00 0.00 4.01
6212 7121 0.898320 GACAGAGGGAGTAGCTTGCA 59.102 55.000 0.00 0.00 0.00 4.08
6213 7122 1.276421 GACAGAGGGAGTAGCTTGCAA 59.724 52.381 0.00 0.00 0.00 4.08
6214 7123 1.277557 ACAGAGGGAGTAGCTTGCAAG 59.722 52.381 22.44 22.44 0.00 4.01
6215 7124 1.277557 CAGAGGGAGTAGCTTGCAAGT 59.722 52.381 26.55 15.87 0.00 3.16
6216 7125 1.981495 AGAGGGAGTAGCTTGCAAGTT 59.019 47.619 26.55 23.34 0.00 2.66
6217 7126 2.079925 GAGGGAGTAGCTTGCAAGTTG 58.920 52.381 26.55 3.95 0.00 3.16
6218 7127 0.523519 GGGAGTAGCTTGCAAGTTGC 59.476 55.000 26.55 23.60 45.29 4.17
6256 7165 6.486320 TCATCAGCTTTTCATACACACAAAGA 59.514 34.615 0.00 0.00 0.00 2.52
6257 7166 6.691754 TCAGCTTTTCATACACACAAAGAA 57.308 33.333 0.00 0.00 0.00 2.52
6258 7167 7.094508 TCAGCTTTTCATACACACAAAGAAA 57.905 32.000 0.00 0.00 0.00 2.52
6259 7168 7.195646 TCAGCTTTTCATACACACAAAGAAAG 58.804 34.615 0.00 0.00 30.83 2.62
6294 7230 7.120579 ACTGTTCAAATGTAACTTGAAGTGTGA 59.879 33.333 0.00 0.00 35.64 3.58
6307 7243 9.744468 AACTTGAAGTGTGAAAATATTACAACC 57.256 29.630 0.00 0.00 0.00 3.77
6308 7244 8.908903 ACTTGAAGTGTGAAAATATTACAACCA 58.091 29.630 0.00 0.00 0.00 3.67
6309 7245 9.180678 CTTGAAGTGTGAAAATATTACAACCAC 57.819 33.333 0.00 0.00 0.00 4.16
6371 7341 0.249073 CTTACTGCCATCCGGTCTCG 60.249 60.000 0.00 0.00 34.16 4.04
6378 7348 2.223876 TGCCATCCGGTCTCGTATTTAC 60.224 50.000 0.00 0.00 33.95 2.01
6380 7350 2.363038 CCATCCGGTCTCGTATTTACCA 59.637 50.000 0.00 0.00 32.55 3.25
6522 7492 9.413734 AGATTACTGATTAGGGGAAAAAGATTG 57.586 33.333 0.00 0.00 0.00 2.67
6527 7497 4.675063 TTAGGGGAAAAAGATTGAGCCT 57.325 40.909 0.00 0.00 0.00 4.58
6648 7619 6.575162 AGAGTTCAAACTGTGTTCTTTTGT 57.425 33.333 0.00 0.00 39.88 2.83
6688 7659 5.992217 GCATCACTTTAGTCTTATGTAGGGG 59.008 44.000 0.00 0.00 0.00 4.79
6689 7660 6.525629 CATCACTTTAGTCTTATGTAGGGGG 58.474 44.000 0.00 0.00 0.00 5.40
6715 7686 2.015736 ACAGTGATCAGCAACGGATC 57.984 50.000 0.00 1.40 41.20 3.36
6776 7751 7.220875 CGATAATCATTGTTCGTTTCAGAGAGA 59.779 37.037 0.00 0.00 0.00 3.10
6784 7759 6.516718 TGTTCGTTTCAGAGAGAGAAAGATT 58.483 36.000 0.00 0.00 35.81 2.40
6818 7793 7.780064 TCATTGTGGGTTCATTATATGTTTGG 58.220 34.615 0.00 0.00 0.00 3.28
6849 7825 1.760029 ACCTTCGGTGCAAATTGGTTT 59.240 42.857 0.00 0.00 32.98 3.27
6855 7831 4.551388 TCGGTGCAAATTGGTTTCATTAC 58.449 39.130 0.00 0.00 0.00 1.89
6860 7836 7.201427 CGGTGCAAATTGGTTTCATTACTATTG 60.201 37.037 0.00 0.00 0.00 1.90
6861 7837 7.602265 GGTGCAAATTGGTTTCATTACTATTGT 59.398 33.333 0.00 0.00 0.00 2.71
6862 7838 8.987890 GTGCAAATTGGTTTCATTACTATTGTT 58.012 29.630 0.00 0.00 0.00 2.83
6934 7913 1.169577 CAGGGGATCGATCTAGACGG 58.830 60.000 23.96 9.47 0.00 4.79
6937 7916 1.544982 GGGGATCGATCTAGACGGACA 60.545 57.143 23.96 0.00 0.00 4.02
6992 7971 1.144057 GGTTGCTCCGACCATCGAT 59.856 57.895 0.00 0.00 43.74 3.59
7005 7985 4.790651 CGACCATCGATCTCTTATTCATCG 59.209 45.833 0.00 0.00 43.74 3.84
7022 8002 2.701073 TCGTCGTCTTCTTCAGTTCC 57.299 50.000 0.00 0.00 0.00 3.62
7068 8048 2.202716 AGCGATCACTCTGCAGCG 60.203 61.111 9.47 5.22 0.00 5.18
7097 8079 0.826256 AAAGGGAAACAACCGGGAGC 60.826 55.000 6.32 0.00 0.00 4.70
7117 8099 2.287909 GCCCGTCAGTTCAGCTAGATAG 60.288 54.545 0.00 0.00 0.00 2.08
7118 8100 3.215151 CCCGTCAGTTCAGCTAGATAGA 58.785 50.000 0.00 0.00 0.00 1.98
7121 8103 5.650266 CCCGTCAGTTCAGCTAGATAGATAT 59.350 44.000 0.00 0.00 0.00 1.63
7122 8104 6.151985 CCCGTCAGTTCAGCTAGATAGATATT 59.848 42.308 0.00 0.00 0.00 1.28
7125 8107 7.962373 CGTCAGTTCAGCTAGATAGATATTCAG 59.038 40.741 0.00 0.00 0.00 3.02
7126 8108 8.243426 GTCAGTTCAGCTAGATAGATATTCAGG 58.757 40.741 0.00 0.00 0.00 3.86
7127 8109 7.035004 CAGTTCAGCTAGATAGATATTCAGGC 58.965 42.308 0.00 0.00 0.00 4.85
7135 8119 7.975616 GCTAGATAGATATTCAGGCAAAGAGAG 59.024 40.741 0.00 0.00 0.00 3.20
7142 8126 0.321387 CAGGCAAAGAGAGAGCAGCA 60.321 55.000 0.00 0.00 0.00 4.41
7147 8131 2.696506 CAAAGAGAGAGCAGCACATGA 58.303 47.619 0.00 0.00 0.00 3.07
7150 8134 3.182341 AGAGAGAGCAGCACATGAATC 57.818 47.619 0.00 0.00 0.00 2.52
7152 8136 3.055312 AGAGAGAGCAGCACATGAATCAA 60.055 43.478 0.00 0.00 0.00 2.57
7158 8142 2.159296 GCAGCACATGAATCAATCAGCA 60.159 45.455 0.00 0.00 42.53 4.41
7168 8152 4.768448 TGAATCAATCAGCATGGAGTGTTT 59.232 37.500 0.00 0.00 34.67 2.83
7169 8153 5.945191 TGAATCAATCAGCATGGAGTGTTTA 59.055 36.000 0.00 0.00 34.67 2.01
7170 8154 6.604396 TGAATCAATCAGCATGGAGTGTTTAT 59.396 34.615 0.00 0.00 34.67 1.40
7171 8155 7.774625 TGAATCAATCAGCATGGAGTGTTTATA 59.225 33.333 0.00 0.00 34.67 0.98
7172 8156 8.523915 AATCAATCAGCATGGAGTGTTTATAA 57.476 30.769 0.00 0.00 34.67 0.98
7173 8157 8.701908 ATCAATCAGCATGGAGTGTTTATAAT 57.298 30.769 0.00 0.00 34.67 1.28
7175 8159 7.774625 TCAATCAGCATGGAGTGTTTATAATGA 59.225 33.333 0.00 0.00 34.67 2.57
7267 8251 4.778415 CAGTCGCGGGACACGGAG 62.778 72.222 31.03 13.41 45.92 4.63
7498 8659 3.126879 ACCGCCATCGTCGTCGTA 61.127 61.111 1.33 0.00 38.33 3.43
7500 8661 2.402388 CGCCATCGTCGTCGTAGT 59.598 61.111 1.33 0.00 38.33 2.73
7503 8664 1.650536 CCATCGTCGTCGTAGTCGC 60.651 63.158 1.33 0.00 39.21 5.19
7505 8666 3.147889 ATCGTCGTCGTAGTCGCCG 62.148 63.158 1.33 0.00 39.21 6.46
7506 8667 4.858200 CGTCGTCGTAGTCGCCGG 62.858 72.222 0.00 0.00 38.92 6.13
7509 8670 4.883300 CGTCGTAGTCGCCGGCTC 62.883 72.222 26.68 17.37 34.82 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.690139 CCTCTACTTGACTAGCTCGTTGA 59.310 47.826 0.00 0.00 0.00 3.18
1 2 3.732471 GCCTCTACTTGACTAGCTCGTTG 60.732 52.174 0.00 0.00 0.00 4.10
2 3 2.424246 GCCTCTACTTGACTAGCTCGTT 59.576 50.000 0.00 0.00 0.00 3.85
3 4 2.018515 GCCTCTACTTGACTAGCTCGT 58.981 52.381 0.00 0.00 0.00 4.18
4 5 2.017782 TGCCTCTACTTGACTAGCTCG 58.982 52.381 0.00 0.00 0.00 5.03
5 6 4.825085 AGTATGCCTCTACTTGACTAGCTC 59.175 45.833 0.00 0.00 0.00 4.09
6 7 4.798882 AGTATGCCTCTACTTGACTAGCT 58.201 43.478 0.00 0.00 0.00 3.32
7 8 5.766174 ACTAGTATGCCTCTACTTGACTAGC 59.234 44.000 0.00 0.00 38.86 3.42
8 9 6.993308 TCACTAGTATGCCTCTACTTGACTAG 59.007 42.308 0.00 0.00 40.35 2.57
9 10 6.766944 GTCACTAGTATGCCTCTACTTGACTA 59.233 42.308 0.00 0.00 36.95 2.59
10 11 5.591067 GTCACTAGTATGCCTCTACTTGACT 59.409 44.000 0.00 0.00 36.95 3.41
11 12 5.357314 TGTCACTAGTATGCCTCTACTTGAC 59.643 44.000 0.00 11.98 38.64 3.18
12 13 5.357314 GTGTCACTAGTATGCCTCTACTTGA 59.643 44.000 0.00 0.18 33.96 3.02
13 14 5.358442 AGTGTCACTAGTATGCCTCTACTTG 59.642 44.000 2.87 0.00 33.96 3.16
14 15 5.511363 AGTGTCACTAGTATGCCTCTACTT 58.489 41.667 2.87 0.00 33.96 2.24
15 16 5.104277 AGAGTGTCACTAGTATGCCTCTACT 60.104 44.000 5.21 0.00 36.04 2.57
16 17 5.008217 CAGAGTGTCACTAGTATGCCTCTAC 59.992 48.000 5.21 0.00 0.00 2.59
17 18 5.126779 CAGAGTGTCACTAGTATGCCTCTA 58.873 45.833 5.21 0.00 0.00 2.43
18 19 3.951037 CAGAGTGTCACTAGTATGCCTCT 59.049 47.826 5.21 1.89 0.00 3.69
19 20 3.697045 ACAGAGTGTCACTAGTATGCCTC 59.303 47.826 5.21 0.00 0.00 4.70
20 21 3.702792 ACAGAGTGTCACTAGTATGCCT 58.297 45.455 5.21 0.00 0.00 4.75
21 22 4.457834 AACAGAGTGTCACTAGTATGCC 57.542 45.455 5.21 0.00 0.00 4.40
22 23 5.230942 ACAAACAGAGTGTCACTAGTATGC 58.769 41.667 5.21 0.00 0.00 3.14
23 24 6.682746 AGACAAACAGAGTGTCACTAGTATG 58.317 40.000 5.21 5.56 46.44 2.39
24 25 6.902771 AGACAAACAGAGTGTCACTAGTAT 57.097 37.500 5.21 0.00 46.44 2.12
25 26 7.447545 ACATAGACAAACAGAGTGTCACTAGTA 59.552 37.037 5.21 0.00 46.44 1.82
26 27 6.265649 ACATAGACAAACAGAGTGTCACTAGT 59.734 38.462 5.21 5.11 46.44 2.57
27 28 6.682746 ACATAGACAAACAGAGTGTCACTAG 58.317 40.000 5.21 4.44 46.44 2.57
28 29 6.650427 ACATAGACAAACAGAGTGTCACTA 57.350 37.500 5.21 0.00 46.44 2.74
29 30 5.537300 ACATAGACAAACAGAGTGTCACT 57.463 39.130 4.81 4.81 46.44 3.41
30 31 7.598869 TGAATACATAGACAAACAGAGTGTCAC 59.401 37.037 7.26 0.00 46.44 3.67
31 32 7.598869 GTGAATACATAGACAAACAGAGTGTCA 59.401 37.037 7.26 0.00 46.44 3.58
32 33 7.598869 TGTGAATACATAGACAAACAGAGTGTC 59.401 37.037 0.00 0.00 44.75 3.67
33 34 7.385205 GTGTGAATACATAGACAAACAGAGTGT 59.615 37.037 0.00 0.00 39.39 3.55
34 35 7.384932 TGTGTGAATACATAGACAAACAGAGTG 59.615 37.037 0.00 0.00 39.39 3.51
35 36 7.441836 TGTGTGAATACATAGACAAACAGAGT 58.558 34.615 0.00 0.00 39.39 3.24
36 37 7.889589 TGTGTGAATACATAGACAAACAGAG 57.110 36.000 0.00 0.00 39.39 3.35
37 38 7.877612 ACATGTGTGAATACATAGACAAACAGA 59.122 33.333 0.00 0.00 39.17 3.41
38 39 8.032952 ACATGTGTGAATACATAGACAAACAG 57.967 34.615 0.00 0.00 39.17 3.16
39 40 7.977789 ACATGTGTGAATACATAGACAAACA 57.022 32.000 0.00 0.00 39.17 2.83
148 149 4.349342 AGTGAAGGAAATATGCCCTAGAGG 59.651 45.833 0.00 0.00 39.47 3.69
149 150 5.070981 TGAGTGAAGGAAATATGCCCTAGAG 59.929 44.000 0.00 0.00 31.36 2.43
150 151 4.968719 TGAGTGAAGGAAATATGCCCTAGA 59.031 41.667 0.00 0.00 31.36 2.43
151 152 5.296151 TGAGTGAAGGAAATATGCCCTAG 57.704 43.478 0.00 0.00 31.36 3.02
152 153 5.912149 ATGAGTGAAGGAAATATGCCCTA 57.088 39.130 0.00 0.00 31.36 3.53
153 154 4.803329 ATGAGTGAAGGAAATATGCCCT 57.197 40.909 0.00 0.00 0.00 5.19
154 155 5.352569 CGATATGAGTGAAGGAAATATGCCC 59.647 44.000 0.00 0.00 0.00 5.36
155 156 5.934625 ACGATATGAGTGAAGGAAATATGCC 59.065 40.000 0.00 0.00 0.00 4.40
156 157 6.091441 GGACGATATGAGTGAAGGAAATATGC 59.909 42.308 0.00 0.00 0.00 3.14
157 158 7.382110 AGGACGATATGAGTGAAGGAAATATG 58.618 38.462 0.00 0.00 0.00 1.78
158 159 7.453126 AGAGGACGATATGAGTGAAGGAAATAT 59.547 37.037 0.00 0.00 0.00 1.28
159 160 6.778069 AGAGGACGATATGAGTGAAGGAAATA 59.222 38.462 0.00 0.00 0.00 1.40
160 161 5.600484 AGAGGACGATATGAGTGAAGGAAAT 59.400 40.000 0.00 0.00 0.00 2.17
161 162 4.956700 AGAGGACGATATGAGTGAAGGAAA 59.043 41.667 0.00 0.00 0.00 3.13
162 163 4.537751 AGAGGACGATATGAGTGAAGGAA 58.462 43.478 0.00 0.00 0.00 3.36
163 164 4.171878 AGAGGACGATATGAGTGAAGGA 57.828 45.455 0.00 0.00 0.00 3.36
164 165 4.339530 TGAAGAGGACGATATGAGTGAAGG 59.660 45.833 0.00 0.00 0.00 3.46
165 166 5.067153 AGTGAAGAGGACGATATGAGTGAAG 59.933 44.000 0.00 0.00 0.00 3.02
166 167 4.950475 AGTGAAGAGGACGATATGAGTGAA 59.050 41.667 0.00 0.00 0.00 3.18
167 168 4.336713 CAGTGAAGAGGACGATATGAGTGA 59.663 45.833 0.00 0.00 0.00 3.41
168 169 4.498850 CCAGTGAAGAGGACGATATGAGTG 60.499 50.000 0.00 0.00 0.00 3.51
169 170 3.634448 CCAGTGAAGAGGACGATATGAGT 59.366 47.826 0.00 0.00 0.00 3.41
170 171 3.634448 ACCAGTGAAGAGGACGATATGAG 59.366 47.826 0.00 0.00 0.00 2.90
194 195 2.666994 GTCTTTGCTAGTAACTGGCGAC 59.333 50.000 0.00 0.00 40.90 5.19
195 196 2.561419 AGTCTTTGCTAGTAACTGGCGA 59.439 45.455 0.00 0.00 40.90 5.54
211 212 4.658786 AGGGGTCGGGGCAGTCTT 62.659 66.667 0.00 0.00 0.00 3.01
215 216 4.410400 GTTGAGGGGTCGGGGCAG 62.410 72.222 0.00 0.00 0.00 4.85
241 242 3.184683 CACTGGCGAGCTCGAAGC 61.185 66.667 38.74 21.16 43.02 3.86
244 245 4.103103 CGACACTGGCGAGCTCGA 62.103 66.667 38.74 18.68 43.02 4.04
305 306 4.003788 CTCGGTGCTGGAACGGGT 62.004 66.667 6.80 0.00 33.56 5.28
387 388 0.250793 ATTAACCGGCGTGGATGACA 59.749 50.000 6.01 0.00 42.00 3.58
403 406 2.027929 ACACGTTCGGATGTTGGGATTA 60.028 45.455 0.00 0.00 0.00 1.75
419 422 1.374252 GATCCTGCAACCGACACGT 60.374 57.895 0.00 0.00 0.00 4.49
425 428 4.473520 AGCCGGATCCTGCAACCG 62.474 66.667 27.45 5.35 45.24 4.44
426 429 2.825836 CAGCCGGATCCTGCAACC 60.826 66.667 27.45 0.88 0.00 3.77
442 445 3.422303 GATGCTGCAACCGACGCA 61.422 61.111 6.36 0.00 37.88 5.24
443 446 4.166011 GGATGCTGCAACCGACGC 62.166 66.667 13.37 0.00 0.00 5.19
444 447 2.434884 AGGATGCTGCAACCGACG 60.435 61.111 21.17 0.00 31.34 5.12
481 484 3.181471 CGGAGAGCTACAAGACAATGGAT 60.181 47.826 0.00 0.00 0.00 3.41
484 487 3.119316 AGTCGGAGAGCTACAAGACAATG 60.119 47.826 12.40 0.00 36.95 2.82
486 489 2.488545 GAGTCGGAGAGCTACAAGACAA 59.511 50.000 12.40 0.00 36.95 3.18
494 497 0.252479 ACCTTCGAGTCGGAGAGCTA 59.748 55.000 22.79 0.00 33.77 3.32
500 503 1.289066 CTGCAACCTTCGAGTCGGA 59.711 57.895 13.54 2.08 0.00 4.55
502 505 1.347817 GAGCTGCAACCTTCGAGTCG 61.348 60.000 6.09 6.09 0.00 4.18
526 535 0.537143 ATTTGCTGGAACTGGCGACA 60.537 50.000 0.00 0.00 39.59 4.35
551 560 4.406648 AGATTACAAGATGTGATCGGCA 57.593 40.909 8.90 0.00 44.89 5.69
562 571 4.142227 GCTAGGACCGACAAGATTACAAGA 60.142 45.833 0.00 0.00 0.00 3.02
563 572 4.113354 GCTAGGACCGACAAGATTACAAG 58.887 47.826 0.00 0.00 0.00 3.16
569 578 3.335579 GTTTTGCTAGGACCGACAAGAT 58.664 45.455 0.00 0.00 0.00 2.40
625 634 0.541392 ACCTTCATGTGGCGATGCTA 59.459 50.000 7.28 0.00 0.00 3.49
926 936 3.472652 GAGAGGAGAGAAGATGAGCGTA 58.527 50.000 0.00 0.00 0.00 4.42
964 974 3.479269 GTTTGGAGGCGACGCTCG 61.479 66.667 20.77 0.00 43.89 5.03
974 984 3.728373 CCGGGGGAGGGTTTGGAG 61.728 72.222 0.00 0.00 0.00 3.86
1105 1118 1.846712 AACTGGGCAGGAAGAGGAGC 61.847 60.000 0.00 0.00 0.00 4.70
1126 1139 3.373565 GGGCGCCTGAACCAAAGG 61.374 66.667 28.56 0.00 37.91 3.11
1127 1140 3.737172 CGGGCGCCTGAACCAAAG 61.737 66.667 32.31 4.30 0.00 2.77
1225 1238 3.302344 CCCGGCCCAAACAAGTGG 61.302 66.667 0.00 0.00 38.51 4.00
1295 1308 2.500442 CTAGCAGAACAGCGACGCG 61.500 63.158 15.18 3.53 40.15 6.01
1353 1366 1.691196 CAGCAAGGGGACAAAGACAA 58.309 50.000 0.00 0.00 0.00 3.18
1430 1445 5.399858 GTCTCGAGTAGTAACTGCAAATCA 58.600 41.667 13.13 0.00 35.56 2.57
1483 1504 0.392461 ATTAGTGAACCGCGCACCAT 60.392 50.000 8.75 2.64 36.95 3.55
1520 1541 2.756760 TCCAGATGAGCCAAGCAATTTC 59.243 45.455 0.00 0.00 0.00 2.17
1521 1542 2.811410 TCCAGATGAGCCAAGCAATTT 58.189 42.857 0.00 0.00 0.00 1.82
1544 1565 6.706716 GGAATCCACTAAATCTACAAGCCTAC 59.293 42.308 0.00 0.00 0.00 3.18
1643 1674 5.875224 TGAGACCAAACATAATCAACAGGA 58.125 37.500 0.00 0.00 0.00 3.86
1652 1683 5.473162 CACAACTGGATGAGACCAAACATAA 59.527 40.000 0.00 0.00 39.59 1.90
1687 1726 5.239306 TGCACTGAGTTAAACTTTGGAGATG 59.761 40.000 0.00 0.00 0.00 2.90
1690 1729 4.576463 AGTGCACTGAGTTAAACTTTGGAG 59.424 41.667 20.97 0.00 0.00 3.86
1708 1747 1.236616 GCTGGTATGTGTGCAGTGCA 61.237 55.000 15.37 15.37 35.60 4.57
1713 1752 1.002257 CCCAGCTGGTATGTGTGCA 60.002 57.895 30.63 0.00 0.00 4.57
1715 1754 0.908910 TACCCCAGCTGGTATGTGTG 59.091 55.000 30.63 13.59 39.91 3.82
1727 1766 4.771114 TGAAGATAACATGGTACCCCAG 57.229 45.455 10.07 1.32 46.15 4.45
1854 1893 6.489700 TGGTAGAATGATGCACTTTCTTTTCA 59.510 34.615 16.62 4.34 41.25 2.69
2005 2048 7.769970 TCTGAAGAAAATGTGCTGGAAAAATTT 59.230 29.630 0.00 0.00 0.00 1.82
2061 2104 7.327214 TCAGAAAAACCAAACTAACAAGCAAT 58.673 30.769 0.00 0.00 0.00 3.56
2072 2115 5.339008 AGGGAAGTTCAGAAAAACCAAAC 57.661 39.130 5.01 0.00 0.00 2.93
2082 2125 3.716872 GGGATATTGGAGGGAAGTTCAGA 59.283 47.826 5.01 0.00 0.00 3.27
2083 2126 3.718956 AGGGATATTGGAGGGAAGTTCAG 59.281 47.826 5.01 0.00 0.00 3.02
2084 2127 3.747852 AGGGATATTGGAGGGAAGTTCA 58.252 45.455 5.01 0.00 0.00 3.18
2085 2128 7.569599 TTATAGGGATATTGGAGGGAAGTTC 57.430 40.000 0.00 0.00 0.00 3.01
2087 2130 8.394040 CAATTTATAGGGATATTGGAGGGAAGT 58.606 37.037 0.00 0.00 0.00 3.01
2088 2131 7.340487 GCAATTTATAGGGATATTGGAGGGAAG 59.660 40.741 0.00 0.00 0.00 3.46
2383 2426 1.074405 TGCAGAGCTTCAGGGAACAAT 59.926 47.619 0.00 0.00 0.00 2.71
2542 2585 0.254178 CCTGACCAGAAGGACCCATG 59.746 60.000 0.00 0.00 36.91 3.66
2620 2663 7.606839 TCCTCGTCGTCATCTATTATGATAGTT 59.393 37.037 4.57 0.00 37.20 2.24
2638 2681 0.811915 ATGACAACTCCTCCTCGTCG 59.188 55.000 0.00 0.00 0.00 5.12
2644 2687 0.107459 GCCCAGATGACAACTCCTCC 60.107 60.000 0.00 0.00 0.00 4.30
2699 2742 1.228245 GCAGAGGGTTTGGCTGTGA 60.228 57.895 0.00 0.00 32.39 3.58
2701 2744 2.116125 GGCAGAGGGTTTGGCTGT 59.884 61.111 0.00 0.00 38.03 4.40
2734 2777 4.410492 GTCATTGTCTGTGACATGAACC 57.590 45.455 0.00 0.00 42.40 3.62
2821 2864 4.716784 AGAGAGAGAGAGAGAGAGCTTACA 59.283 45.833 0.00 0.00 0.00 2.41
2829 2872 3.963374 TGGAGAGAGAGAGAGAGAGAGAG 59.037 52.174 0.00 0.00 0.00 3.20
2831 2874 3.452264 TGTGGAGAGAGAGAGAGAGAGAG 59.548 52.174 0.00 0.00 0.00 3.20
2832 2875 3.449918 TGTGGAGAGAGAGAGAGAGAGA 58.550 50.000 0.00 0.00 0.00 3.10
2833 2876 3.432749 CCTGTGGAGAGAGAGAGAGAGAG 60.433 56.522 0.00 0.00 0.00 3.20
2834 2877 2.505407 CCTGTGGAGAGAGAGAGAGAGA 59.495 54.545 0.00 0.00 0.00 3.10
2835 2878 2.421952 CCCTGTGGAGAGAGAGAGAGAG 60.422 59.091 0.00 0.00 0.00 3.20
2847 2897 3.068307 CGTTCTAACCTATCCCTGTGGAG 59.932 52.174 0.00 0.00 46.08 3.86
2866 2916 1.772182 CAAGACTCGACAAGCTCGTT 58.228 50.000 0.00 0.00 43.45 3.85
2868 2918 0.387878 AGCAAGACTCGACAAGCTCG 60.388 55.000 0.00 0.00 44.44 5.03
2876 2926 7.739498 AAAATTTAGGTAAAGCAAGACTCGA 57.261 32.000 0.00 0.00 0.00 4.04
2877 2927 9.887406 TTTAAAATTTAGGTAAAGCAAGACTCG 57.113 29.630 0.00 0.00 0.00 4.18
2914 2964 0.601311 GTCCGTTCTTGCTCTGCTGT 60.601 55.000 0.00 0.00 0.00 4.40
2936 2986 6.498538 TCCAAGTTTATTCCACCCATATGTT 58.501 36.000 1.24 0.00 0.00 2.71
2943 2993 4.335594 CGATCTTCCAAGTTTATTCCACCC 59.664 45.833 0.00 0.00 0.00 4.61
2966 3016 8.180267 CACTTTCCATGTCTTCATCAGATAAAC 58.820 37.037 0.00 0.00 32.60 2.01
2990 3040 0.250038 TCTCACTGTTCCAGCTGCAC 60.250 55.000 8.66 7.79 34.37 4.57
3022 3072 4.431416 TGAAGAGCAAGAGGGTACAAAA 57.569 40.909 0.00 0.00 0.00 2.44
3023 3073 4.565652 GGATGAAGAGCAAGAGGGTACAAA 60.566 45.833 0.00 0.00 0.00 2.83
3048 3098 1.108776 TACCGCAGTAAGGTAGCCTG 58.891 55.000 0.00 0.00 42.81 4.85
3081 3131 6.466308 AGGAAGAAAACGCAAAATAAATGC 57.534 33.333 0.00 0.00 40.41 3.56
3085 3135 8.361139 TCCAAATAGGAAGAAAACGCAAAATAA 58.639 29.630 0.00 0.00 45.65 1.40
3118 3168 2.966516 CCACTCCTCCCTGTACCTAATC 59.033 54.545 0.00 0.00 0.00 1.75
3135 3185 3.149196 CTGGTTGCATAGTTGTTCCACT 58.851 45.455 0.00 0.00 0.00 4.00
3179 3229 4.220602 TGTTCTTCAACATCCTCGATCTCA 59.779 41.667 0.00 0.00 37.61 3.27
3184 3234 2.612972 GGCTGTTCTTCAACATCCTCGA 60.613 50.000 1.32 0.00 43.06 4.04
3188 3238 4.702131 ACTAATGGCTGTTCTTCAACATCC 59.298 41.667 1.54 1.54 45.54 3.51
3201 3251 3.146618 ACGACGTCTAACTAATGGCTG 57.853 47.619 14.70 0.00 0.00 4.85
3237 3287 2.625314 CTGTTGACTCTGTGTCTCCAGA 59.375 50.000 16.90 0.00 45.54 3.86
3385 3435 5.413499 TGAGGCTGAAGTAATACCGTTAAC 58.587 41.667 0.00 0.00 0.00 2.01
3398 3448 1.467734 GTGTGAGCAATGAGGCTGAAG 59.532 52.381 0.00 0.00 45.99 3.02
3400 3450 0.397564 TGTGTGAGCAATGAGGCTGA 59.602 50.000 0.00 0.00 45.99 4.26
3401 3451 1.241165 TTGTGTGAGCAATGAGGCTG 58.759 50.000 0.00 0.00 45.99 4.85
3403 3453 2.490903 AGAATTGTGTGAGCAATGAGGC 59.509 45.455 0.00 0.00 38.87 4.70
3404 3454 4.458295 AGAAGAATTGTGTGAGCAATGAGG 59.542 41.667 0.00 0.00 38.87 3.86
3405 3455 5.624344 AGAAGAATTGTGTGAGCAATGAG 57.376 39.130 0.00 0.00 38.87 2.90
3406 3456 5.766670 AGAAGAAGAATTGTGTGAGCAATGA 59.233 36.000 0.00 0.00 38.87 2.57
3407 3457 5.856986 CAGAAGAAGAATTGTGTGAGCAATG 59.143 40.000 0.00 0.00 38.87 2.82
3408 3458 5.048224 CCAGAAGAAGAATTGTGTGAGCAAT 60.048 40.000 0.00 0.00 40.43 3.56
3410 3460 3.817084 CCAGAAGAAGAATTGTGTGAGCA 59.183 43.478 0.00 0.00 0.00 4.26
3411 3461 4.067896 TCCAGAAGAAGAATTGTGTGAGC 58.932 43.478 0.00 0.00 0.00 4.26
3412 3462 6.624352 TTTCCAGAAGAAGAATTGTGTGAG 57.376 37.500 0.00 0.00 35.40 3.51
3413 3463 6.603201 ACTTTTCCAGAAGAAGAATTGTGTGA 59.397 34.615 8.39 0.00 35.40 3.58
3414 3464 6.694411 CACTTTTCCAGAAGAAGAATTGTGTG 59.306 38.462 8.39 0.00 35.40 3.82
3415 3465 6.183360 CCACTTTTCCAGAAGAAGAATTGTGT 60.183 38.462 8.39 0.00 35.40 3.72
3436 3487 0.779997 AGAAGAAATGCCACCCCACT 59.220 50.000 0.00 0.00 0.00 4.00
3530 3581 0.752658 TCGCATGAGATGGAACGGAT 59.247 50.000 0.00 0.00 0.00 4.18
3531 3582 0.103026 CTCGCATGAGATGGAACGGA 59.897 55.000 0.00 0.00 45.57 4.69
3532 3583 1.493950 GCTCGCATGAGATGGAACGG 61.494 60.000 0.00 0.00 45.57 4.44
3533 3584 0.529337 AGCTCGCATGAGATGGAACG 60.529 55.000 0.00 0.00 45.57 3.95
3534 3585 1.216122 GAGCTCGCATGAGATGGAAC 58.784 55.000 0.00 0.00 41.92 3.62
3535 3586 0.249197 CGAGCTCGCATGAGATGGAA 60.249 55.000 25.07 0.00 41.92 3.53
3536 3587 1.103398 TCGAGCTCGCATGAGATGGA 61.103 55.000 30.97 7.00 41.92 3.41
3537 3588 0.663867 CTCGAGCTCGCATGAGATGG 60.664 60.000 30.97 8.08 41.92 3.51
3538 3589 0.030504 ACTCGAGCTCGCATGAGATG 59.969 55.000 30.97 14.06 41.92 2.90
3594 3645 4.682860 ACGTAATAACCGTTGTTCAGTCAG 59.317 41.667 0.00 0.00 34.28 3.51
3617 3668 2.158827 TCAAGTACAAACCTGCTGCTCA 60.159 45.455 0.00 0.00 0.00 4.26
3696 3747 7.016563 TGCAAGGTACTCATCATCCTGTAATAT 59.983 37.037 0.00 0.00 38.49 1.28
3725 3776 4.077822 CCTTTTCTTGATCAGCTTGGAGT 58.922 43.478 0.00 0.00 0.00 3.85
3777 3828 1.633852 GCAGCTTCTTCCAGCAGTCG 61.634 60.000 0.00 0.00 42.84 4.18
3792 3843 2.745492 AGCTTCTCTTGCGGCAGC 60.745 61.111 1.67 0.31 45.41 5.25
3797 3848 4.594367 AGAGCAGCTTCTCTTGCG 57.406 55.556 10.36 0.00 40.32 4.85
3826 3877 1.261238 CCGTTCCTCCTCCTCTTGCT 61.261 60.000 0.00 0.00 0.00 3.91
3844 3895 1.468520 TCTCAAGCTGCATTTTACGCC 59.531 47.619 1.02 0.00 0.00 5.68
3918 3969 9.953697 CTACTACTCACATACTGGAAAATACTC 57.046 37.037 0.00 0.00 0.00 2.59
3938 3989 8.385898 ACAGCAGTGATCTAGTTATCTACTAC 57.614 38.462 0.00 0.00 38.33 2.73
3959 4066 8.895932 AAAAATAAGTTTCGTATGATCACAGC 57.104 30.769 0.00 0.00 0.00 4.40
4001 4387 7.393234 TCTGCAACATAACATAAACTAAAGCCT 59.607 33.333 0.00 0.00 0.00 4.58
4002 4388 7.484959 GTCTGCAACATAACATAAACTAAAGCC 59.515 37.037 0.00 0.00 0.00 4.35
4007 4393 9.713713 TGTAAGTCTGCAACATAACATAAACTA 57.286 29.630 0.00 0.00 0.00 2.24
4085 4945 6.337356 TGCCCAAAGTTTTCTTGAAAGTAAG 58.663 36.000 0.00 0.00 40.37 2.34
4086 4946 6.287589 TGCCCAAAGTTTTCTTGAAAGTAA 57.712 33.333 0.00 0.00 40.37 2.24
4087 4947 5.923733 TGCCCAAAGTTTTCTTGAAAGTA 57.076 34.783 0.00 0.00 40.37 2.24
4088 4948 4.817318 TGCCCAAAGTTTTCTTGAAAGT 57.183 36.364 0.00 0.00 40.37 2.66
4107 4967 4.439305 TTCAGCTATCAACCAAACATGC 57.561 40.909 0.00 0.00 0.00 4.06
4118 4978 6.477053 AAGTCTAGCAAGATTCAGCTATCA 57.523 37.500 10.15 0.79 41.99 2.15
4127 4987 5.532406 TCAGCACAAAAAGTCTAGCAAGATT 59.468 36.000 0.00 0.00 33.30 2.40
4129 4989 4.273480 GTCAGCACAAAAAGTCTAGCAAGA 59.727 41.667 0.00 0.00 0.00 3.02
4133 4993 3.058639 CAGGTCAGCACAAAAAGTCTAGC 60.059 47.826 0.00 0.00 0.00 3.42
4144 5004 1.526686 CTTGCCACAGGTCAGCACA 60.527 57.895 0.00 0.00 35.96 4.57
4155 5015 4.756630 CCTTTTGTGGCTTGCCAC 57.243 55.556 31.20 31.20 40.73 5.01
4178 5038 1.523758 GTTGTGGCGACCAATTCTCT 58.476 50.000 0.00 0.00 34.18 3.10
4220 5080 3.851051 GCCCCAGCTATCATAGAGC 57.149 57.895 0.00 0.00 40.42 4.09
4274 5134 4.400884 TGTGGCTAATGTTTGTTTCACTGT 59.599 37.500 0.00 0.00 0.00 3.55
4278 5138 5.724328 TGTTTGTGGCTAATGTTTGTTTCA 58.276 33.333 0.00 0.00 0.00 2.69
4384 5244 2.096819 GCAAGTCTCAACGGAACAACAA 59.903 45.455 0.00 0.00 0.00 2.83
4446 5307 0.706433 ACTGGCAGATCCCCAACAAT 59.294 50.000 23.66 0.00 30.66 2.71
4700 5563 5.717119 AGAGGCAAGTATAAATGAACCCT 57.283 39.130 0.00 0.00 0.00 4.34
4725 5588 5.525012 GCATGTCAGAAGCATGTATTAGTGA 59.475 40.000 7.06 0.00 43.93 3.41
4735 5598 2.211250 AACCAGCATGTCAGAAGCAT 57.789 45.000 0.00 0.00 0.00 3.79
4889 5754 8.299570 AGGTTGCACTCATTTTTATTAAGACAG 58.700 33.333 0.00 0.00 0.00 3.51
4931 5796 0.905357 AGTGCCTGACATACCAGTCC 59.095 55.000 0.00 0.00 37.73 3.85
4981 5881 3.844211 AGTATTGGTTTGGGTAGCTCAGA 59.156 43.478 0.00 0.00 0.00 3.27
5058 5958 0.323999 AAAACCGGAACATAGGGCCC 60.324 55.000 16.46 16.46 0.00 5.80
5072 5977 0.310854 CAGACAACCAGGCGAAAACC 59.689 55.000 0.00 0.00 0.00 3.27
5090 5995 1.384525 AGGTTGTTGCGTTAACTGCA 58.615 45.000 17.24 17.24 40.05 4.41
5171 6076 3.715315 TCTGCTCTTGGGATCAGATGAAT 59.285 43.478 0.00 0.00 39.06 2.57
5177 6082 4.686191 ACTAATCTGCTCTTGGGATCAG 57.314 45.455 0.00 0.00 37.13 2.90
5213 6118 6.347160 GCTGGATTGAGAAAATTCAACAAAGC 60.347 38.462 8.83 9.39 39.68 3.51
5249 6155 5.006386 ACCTCAAGAAAACAGGATGCTAAG 58.994 41.667 0.00 0.00 42.53 2.18
5260 6166 5.306394 ACTAGCAGGTTACCTCAAGAAAAC 58.694 41.667 0.00 0.00 0.00 2.43
5447 6356 9.952030 TTTGTAGTGATCCATAGAATGTGTTAA 57.048 29.630 0.00 0.00 0.00 2.01
5521 6430 2.034878 CATAGTCCTGCTAGTCTGCCA 58.965 52.381 0.00 0.00 32.45 4.92
5552 6461 8.025445 TCTTGCTTCTAAAATTTCTCAATGAGC 58.975 33.333 5.18 0.00 0.00 4.26
5601 6510 2.304180 GCAGGGCACATATACATCCTCT 59.696 50.000 0.00 0.00 0.00 3.69
5619 6528 3.989817 GGAAGCATAAAACTTGTTGGCAG 59.010 43.478 0.00 0.00 0.00 4.85
5731 6640 0.911769 CTCCCCCTGACAGCACATAA 59.088 55.000 0.00 0.00 0.00 1.90
5744 6653 2.092212 TGCAGAAAGAATGATCTCCCCC 60.092 50.000 0.00 0.00 33.77 5.40
5786 6695 2.283145 ACAGTGCCAGAGAAGCAATT 57.717 45.000 0.00 0.00 43.02 2.32
5813 6722 3.589988 AGGAAATTAGAGACACTGCACG 58.410 45.455 0.00 0.00 0.00 5.34
5867 6776 8.164153 GCACAATATAACTTTCAACATTGCTTG 58.836 33.333 0.00 0.00 0.00 4.01
5973 6882 2.050918 GGGTCCAAATGGTTTCCCAAA 58.949 47.619 18.00 0.00 46.04 3.28
6050 6959 9.584008 AGTAAAAAGACGGAGATATATGGTCTA 57.416 33.333 0.00 0.00 36.99 2.59
6062 6971 8.480643 AATGTATCAAGAGTAAAAAGACGGAG 57.519 34.615 0.00 0.00 0.00 4.63
6079 6988 9.822727 TCCCACTAGATATACTTGAATGTATCA 57.177 33.333 0.00 0.00 35.14 2.15
6146 7055 7.962934 TGTAAGACGTTTCAAAAACTTCATG 57.037 32.000 10.45 0.00 0.00 3.07
6148 7057 8.973835 AAATGTAAGACGTTTCAAAAACTTCA 57.026 26.923 10.45 0.00 32.22 3.02
6154 7063 8.312524 GCGTTTTAAATGTAAGACGTTTCAAAA 58.687 29.630 17.25 4.67 45.08 2.44
6157 7066 5.908499 GGCGTTTTAAATGTAAGACGTTTCA 59.092 36.000 17.25 0.00 45.08 2.69
6158 7067 6.138088 AGGCGTTTTAAATGTAAGACGTTTC 58.862 36.000 17.25 9.43 45.08 2.78
6159 7068 6.063640 AGGCGTTTTAAATGTAAGACGTTT 57.936 33.333 17.25 6.10 45.08 3.60
6160 7069 5.678132 AGGCGTTTTAAATGTAAGACGTT 57.322 34.783 17.25 6.39 45.08 3.99
6161 7070 5.678132 AAGGCGTTTTAAATGTAAGACGT 57.322 34.783 17.25 0.00 45.08 4.34
6162 7071 6.592166 TGTAAGGCGTTTTAAATGTAAGACG 58.408 36.000 13.05 13.05 45.70 4.18
6163 7072 8.959734 AATGTAAGGCGTTTTAAATGTAAGAC 57.040 30.769 0.00 0.00 0.00 3.01
6164 7073 9.968870 AAAATGTAAGGCGTTTTAAATGTAAGA 57.031 25.926 0.00 0.00 42.58 2.10
6166 7075 9.745880 TCAAAATGTAAGGCGTTTTAAATGTAA 57.254 25.926 0.00 0.00 42.53 2.41
6167 7076 9.400638 CTCAAAATGTAAGGCGTTTTAAATGTA 57.599 29.630 0.00 0.00 42.53 2.29
6168 7077 8.138712 TCTCAAAATGTAAGGCGTTTTAAATGT 58.861 29.630 0.00 0.00 42.53 2.71
6169 7078 8.424731 GTCTCAAAATGTAAGGCGTTTTAAATG 58.575 33.333 0.00 0.00 42.53 2.32
6170 7079 8.138712 TGTCTCAAAATGTAAGGCGTTTTAAAT 58.861 29.630 0.00 0.00 42.53 1.40
6171 7080 7.481642 TGTCTCAAAATGTAAGGCGTTTTAAA 58.518 30.769 0.00 0.00 42.53 1.52
6172 7081 7.012515 TCTGTCTCAAAATGTAAGGCGTTTTAA 59.987 33.333 0.00 0.00 42.53 1.52
6173 7082 6.483974 TCTGTCTCAAAATGTAAGGCGTTTTA 59.516 34.615 0.00 0.00 42.53 1.52
6174 7083 5.298276 TCTGTCTCAAAATGTAAGGCGTTTT 59.702 36.000 0.00 0.00 44.53 2.43
6175 7084 4.819630 TCTGTCTCAAAATGTAAGGCGTTT 59.180 37.500 0.00 0.00 37.88 3.60
6176 7085 4.385825 TCTGTCTCAAAATGTAAGGCGTT 58.614 39.130 0.00 0.00 0.00 4.84
6177 7086 3.997021 CTCTGTCTCAAAATGTAAGGCGT 59.003 43.478 0.00 0.00 0.00 5.68
6178 7087 3.372206 CCTCTGTCTCAAAATGTAAGGCG 59.628 47.826 0.00 0.00 0.00 5.52
6179 7088 3.691609 CCCTCTGTCTCAAAATGTAAGGC 59.308 47.826 0.00 0.00 0.00 4.35
6180 7089 5.165961 TCCCTCTGTCTCAAAATGTAAGG 57.834 43.478 0.00 0.00 0.00 2.69
6181 7090 5.799213 ACTCCCTCTGTCTCAAAATGTAAG 58.201 41.667 0.00 0.00 0.00 2.34
6182 7091 5.825593 ACTCCCTCTGTCTCAAAATGTAA 57.174 39.130 0.00 0.00 0.00 2.41
6183 7092 5.105310 GCTACTCCCTCTGTCTCAAAATGTA 60.105 44.000 0.00 0.00 0.00 2.29
6184 7093 4.323104 GCTACTCCCTCTGTCTCAAAATGT 60.323 45.833 0.00 0.00 0.00 2.71
6185 7094 4.081198 AGCTACTCCCTCTGTCTCAAAATG 60.081 45.833 0.00 0.00 0.00 2.32
6186 7095 4.100373 AGCTACTCCCTCTGTCTCAAAAT 58.900 43.478 0.00 0.00 0.00 1.82
6187 7096 3.511477 AGCTACTCCCTCTGTCTCAAAA 58.489 45.455 0.00 0.00 0.00 2.44
6188 7097 3.176924 AGCTACTCCCTCTGTCTCAAA 57.823 47.619 0.00 0.00 0.00 2.69
6189 7098 2.828520 CAAGCTACTCCCTCTGTCTCAA 59.171 50.000 0.00 0.00 0.00 3.02
6190 7099 2.451490 CAAGCTACTCCCTCTGTCTCA 58.549 52.381 0.00 0.00 0.00 3.27
6191 7100 1.136110 GCAAGCTACTCCCTCTGTCTC 59.864 57.143 0.00 0.00 0.00 3.36
6192 7101 1.190643 GCAAGCTACTCCCTCTGTCT 58.809 55.000 0.00 0.00 0.00 3.41
6193 7102 0.898320 TGCAAGCTACTCCCTCTGTC 59.102 55.000 0.00 0.00 0.00 3.51
6194 7103 1.277557 CTTGCAAGCTACTCCCTCTGT 59.722 52.381 14.65 0.00 0.00 3.41
6195 7104 1.277557 ACTTGCAAGCTACTCCCTCTG 59.722 52.381 26.27 0.00 0.00 3.35
6196 7105 1.650528 ACTTGCAAGCTACTCCCTCT 58.349 50.000 26.27 0.00 0.00 3.69
6197 7106 2.079925 CAACTTGCAAGCTACTCCCTC 58.920 52.381 26.27 0.00 0.00 4.30
6198 7107 1.884067 GCAACTTGCAAGCTACTCCCT 60.884 52.381 26.27 0.83 44.26 4.20
6199 7108 0.523519 GCAACTTGCAAGCTACTCCC 59.476 55.000 26.27 4.43 44.26 4.30
6210 7119 4.151689 TGATAACTACTCGTTGCAACTTGC 59.848 41.667 26.09 6.82 45.29 4.01
6211 7120 5.839262 TGATAACTACTCGTTGCAACTTG 57.161 39.130 26.09 19.64 37.05 3.16
6212 7121 6.163476 TGATGATAACTACTCGTTGCAACTT 58.837 36.000 26.09 15.04 37.05 2.66
6213 7122 5.720202 TGATGATAACTACTCGTTGCAACT 58.280 37.500 26.09 11.27 37.05 3.16
6214 7123 5.500931 GCTGATGATAACTACTCGTTGCAAC 60.501 44.000 19.89 19.89 37.05 4.17
6215 7124 4.566759 GCTGATGATAACTACTCGTTGCAA 59.433 41.667 0.00 0.00 37.05 4.08
6216 7125 4.112634 GCTGATGATAACTACTCGTTGCA 58.887 43.478 0.00 0.00 37.05 4.08
6217 7126 4.363999 AGCTGATGATAACTACTCGTTGC 58.636 43.478 0.00 0.00 37.05 4.17
6218 7127 6.893958 AAAGCTGATGATAACTACTCGTTG 57.106 37.500 0.00 0.00 37.05 4.10
6219 7128 7.097192 TGAAAAGCTGATGATAACTACTCGTT 58.903 34.615 0.00 0.00 39.64 3.85
6220 7129 6.631016 TGAAAAGCTGATGATAACTACTCGT 58.369 36.000 0.00 0.00 0.00 4.18
6268 7177 7.120579 TCACACTTCAAGTTACATTTGAACAGT 59.879 33.333 0.00 0.00 39.05 3.55
6347 7316 0.824109 CCGGATGGCAGTAAGAGTCA 59.176 55.000 0.00 0.00 0.00 3.41
6371 7341 6.007936 TGCAAGACACACAATGGTAAATAC 57.992 37.500 0.00 0.00 0.00 1.89
6378 7348 1.321474 ACCTGCAAGACACACAATGG 58.679 50.000 0.00 0.00 34.07 3.16
6380 7350 3.149196 CCTTACCTGCAAGACACACAAT 58.851 45.455 0.00 0.00 34.07 2.71
6446 7416 5.163884 GCTTGTTAACCCGAGATCAGTAAAC 60.164 44.000 2.48 0.00 0.00 2.01
6522 7492 1.133136 TGGTATCCCTAGGTGAGGCTC 60.133 57.143 7.79 7.79 45.17 4.70
6527 7497 2.522705 AGATGGTGGTATCCCTAGGTGA 59.477 50.000 8.29 5.19 0.00 4.02
6648 7619 0.321210 ATGCGAACCGTTCCACATCA 60.321 50.000 5.67 0.00 0.00 3.07
6688 7659 5.447279 CCGTTGCTGATCACTGTTTTATACC 60.447 44.000 0.00 0.00 0.00 2.73
6689 7660 5.350365 TCCGTTGCTGATCACTGTTTTATAC 59.650 40.000 0.00 0.00 0.00 1.47
6715 7686 5.702865 CGCATTCATAACCAAATATCCTGG 58.297 41.667 2.86 2.86 40.05 4.45
6750 7725 7.220875 TCTCTCTGAAACGAACAATGATTATCG 59.779 37.037 9.95 9.95 40.90 2.92
6776 7751 6.239402 CCACAATGAAACCAAGGAATCTTTCT 60.239 38.462 0.00 0.00 0.00 2.52
6784 7759 2.765689 ACCCACAATGAAACCAAGGA 57.234 45.000 0.00 0.00 0.00 3.36
6832 7808 3.742433 ATGAAACCAATTTGCACCGAA 57.258 38.095 0.00 0.00 0.00 4.30
6860 7836 7.201652 GCCTCTGTTGAAGGTCAGATTAATAAC 60.202 40.741 0.00 0.00 39.48 1.89
6861 7837 6.823689 GCCTCTGTTGAAGGTCAGATTAATAA 59.176 38.462 0.00 0.00 39.48 1.40
6862 7838 6.349300 GCCTCTGTTGAAGGTCAGATTAATA 58.651 40.000 0.00 0.00 39.48 0.98
6863 7839 5.189180 GCCTCTGTTGAAGGTCAGATTAAT 58.811 41.667 0.00 0.00 39.48 1.40
6864 7840 4.565652 GGCCTCTGTTGAAGGTCAGATTAA 60.566 45.833 0.00 0.00 39.48 1.40
6865 7841 3.055094 GGCCTCTGTTGAAGGTCAGATTA 60.055 47.826 0.00 0.00 39.48 1.75
6934 7913 1.135333 GTGCCTAGTAGCTGTCCTGTC 59.865 57.143 0.00 0.00 0.00 3.51
6937 7916 1.479709 CAGTGCCTAGTAGCTGTCCT 58.520 55.000 0.00 0.00 0.00 3.85
6992 7971 6.093633 TGAAGAAGACGACGATGAATAAGAGA 59.906 38.462 0.00 0.00 0.00 3.10
7005 7985 2.559231 AGGAGGAACTGAAGAAGACGAC 59.441 50.000 0.00 0.00 41.55 4.34
7022 8002 1.666054 GCTCCATGCAAGAAGAGGAG 58.334 55.000 11.81 11.81 46.71 3.69
7046 8026 2.229589 GCAGAGTGATCGCTCGCTG 61.230 63.158 29.28 23.85 42.28 5.18
7068 8048 0.315251 GTTTCCCTTTGACTGCTGCC 59.685 55.000 0.00 0.00 0.00 4.85
7075 8055 0.671796 CCCGGTTGTTTCCCTTTGAC 59.328 55.000 0.00 0.00 0.00 3.18
7081 8063 2.675423 GGCTCCCGGTTGTTTCCC 60.675 66.667 0.00 0.00 0.00 3.97
7097 8079 3.215151 TCTATCTAGCTGAACTGACGGG 58.785 50.000 0.00 0.00 0.00 5.28
7117 8099 4.701765 TGCTCTCTCTTTGCCTGAATATC 58.298 43.478 0.00 0.00 0.00 1.63
7118 8100 4.706035 CTGCTCTCTCTTTGCCTGAATAT 58.294 43.478 0.00 0.00 0.00 1.28
7121 8103 1.610102 GCTGCTCTCTCTTTGCCTGAA 60.610 52.381 0.00 0.00 0.00 3.02
7122 8104 0.036577 GCTGCTCTCTCTTTGCCTGA 60.037 55.000 0.00 0.00 0.00 3.86
7125 8107 0.604780 TGTGCTGCTCTCTCTTTGCC 60.605 55.000 0.00 0.00 0.00 4.52
7126 8108 1.130749 CATGTGCTGCTCTCTCTTTGC 59.869 52.381 0.00 0.00 0.00 3.68
7127 8109 2.696506 TCATGTGCTGCTCTCTCTTTG 58.303 47.619 0.00 0.00 0.00 2.77
7135 8119 3.792459 GCTGATTGATTCATGTGCTGCTC 60.792 47.826 0.00 0.00 32.72 4.26
7142 8126 4.338400 CACTCCATGCTGATTGATTCATGT 59.662 41.667 0.00 0.00 35.72 3.21
7147 8131 8.523915 TTATAAACACTCCATGCTGATTGATT 57.476 30.769 0.00 0.00 0.00 2.57
7150 8134 7.933396 TCATTATAAACACTCCATGCTGATTG 58.067 34.615 0.00 0.00 0.00 2.67
7152 8136 8.162085 AGATCATTATAAACACTCCATGCTGAT 58.838 33.333 0.00 0.00 0.00 2.90
7158 8142 7.387948 GCCGTAAGATCATTATAAACACTCCAT 59.612 37.037 0.00 0.00 43.02 3.41
7168 8152 5.106277 CGTCTCCTGCCGTAAGATCATTATA 60.106 44.000 0.00 0.00 43.02 0.98
7169 8153 4.321304 CGTCTCCTGCCGTAAGATCATTAT 60.321 45.833 0.00 0.00 43.02 1.28
7170 8154 3.004419 CGTCTCCTGCCGTAAGATCATTA 59.996 47.826 0.00 0.00 43.02 1.90
7171 8155 2.223829 CGTCTCCTGCCGTAAGATCATT 60.224 50.000 0.00 0.00 43.02 2.57
7172 8156 1.338337 CGTCTCCTGCCGTAAGATCAT 59.662 52.381 0.00 0.00 43.02 2.45
7173 8157 0.738975 CGTCTCCTGCCGTAAGATCA 59.261 55.000 0.00 0.00 43.02 2.92
7175 8159 1.437986 GCGTCTCCTGCCGTAAGAT 59.562 57.895 0.00 0.00 43.02 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.