Multiple sequence alignment - TraesCS5A01G313100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G313100 chr5A 100.000 2433 0 0 1 2433 524239635 524242067 0.000000e+00 4494.0
1 TraesCS5A01G313100 chr5B 91.085 1447 71 29 750 2164 496521666 496523086 0.000000e+00 1905.0
2 TraesCS5A01G313100 chr5B 92.000 150 12 0 756 905 496519508 496519657 6.820000e-51 211.0
3 TraesCS5A01G313100 chr5B 78.862 246 31 10 507 748 496519225 496519453 1.950000e-31 147.0
4 TraesCS5A01G313100 chr5B 95.556 90 4 0 2344 2433 496523257 496523346 7.010000e-31 145.0
5 TraesCS5A01G313100 chr5B 87.342 79 3 3 2190 2268 496523174 496523245 1.550000e-12 84.2
6 TraesCS5A01G313100 chr5D 92.348 1137 66 13 1040 2164 412360961 412362088 0.000000e+00 1598.0
7 TraesCS5A01G313100 chr5D 92.857 308 12 4 750 1048 412360488 412360794 2.870000e-119 438.0
8 TraesCS5A01G313100 chr5D 84.255 235 17 11 507 736 412360188 412360407 6.820000e-51 211.0
9 TraesCS5A01G313100 chr5D 97.143 35 1 0 2281 2315 554506315 554506281 2.610000e-05 60.2
10 TraesCS5A01G313100 chr2D 77.301 163 30 6 1 160 427959656 427959498 3.330000e-14 89.8
11 TraesCS5A01G313100 chr2D 81.416 113 15 4 4 113 580251481 580251590 1.200000e-13 87.9
12 TraesCS5A01G313100 chr2A 77.419 155 30 4 2 154 559617857 559618008 1.200000e-13 87.9
13 TraesCS5A01G313100 chr7A 80.000 125 15 9 1 120 675987882 675987763 1.550000e-12 84.2
14 TraesCS5A01G313100 chr7A 80.000 125 15 9 1 120 676029020 676028901 1.550000e-12 84.2
15 TraesCS5A01G313100 chr7A 80.000 125 14 10 1 120 675947328 675947210 5.580000e-12 82.4
16 TraesCS5A01G313100 chr4A 80.159 126 13 10 1 120 524233740 524233859 1.550000e-12 84.2
17 TraesCS5A01G313100 chr4A 100.000 34 0 0 2282 2315 614028116 614028149 2.020000e-06 63.9
18 TraesCS5A01G313100 chr1D 77.273 154 23 10 1 148 467413302 467413155 2.010000e-11 80.5
19 TraesCS5A01G313100 chr3B 75.145 173 33 10 1 166 781116996 781117165 3.360000e-09 73.1
20 TraesCS5A01G313100 chr3D 100.000 31 0 0 2284 2314 515551223 515551193 9.400000e-05 58.4
21 TraesCS5A01G313100 chr3D 94.595 37 1 1 2280 2315 575035131 575035167 3.380000e-04 56.5
22 TraesCS5A01G313100 chr4D 100.000 28 0 0 2281 2308 92654035 92654008 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G313100 chr5A 524239635 524242067 2432 False 4494.00 4494 100.000 1 2433 1 chr5A.!!$F1 2432
1 TraesCS5A01G313100 chr5B 496519225 496523346 4121 False 498.44 1905 88.969 507 2433 5 chr5B.!!$F1 1926
2 TraesCS5A01G313100 chr5D 412360188 412362088 1900 False 749.00 1598 89.820 507 2164 3 chr5D.!!$F1 1657

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
582 586 0.164002 GAAAACCAGAGCGAACGAGC 59.836 55.0 0.0 0.0 37.41 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2117 4569 0.249073 CTTACTGCCATCCGGTCTCG 60.249 60.0 0.0 0.0 34.16 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 110 9.727859 TGTATGTATACCAAAAATGTACTGTGT 57.272 29.630 0.00 0.00 32.33 3.72
110 111 9.982291 GTATGTATACCAAAAATGTACTGTGTG 57.018 33.333 0.00 0.00 0.00 3.82
111 112 8.630054 ATGTATACCAAAAATGTACTGTGTGT 57.370 30.769 0.00 0.00 0.00 3.72
112 113 9.727859 ATGTATACCAAAAATGTACTGTGTGTA 57.272 29.630 0.00 0.00 0.00 2.90
175 176 9.771915 TTTAAACGTGTTTTAAAGAAACGATCT 57.228 25.926 19.68 9.95 42.33 2.75
176 177 9.771915 TTAAACGTGTTTTAAAGAAACGATCTT 57.228 25.926 19.68 13.63 40.64 2.40
177 178 9.212687 TAAACGTGTTTTAAAGAAACGATCTTG 57.787 29.630 19.68 0.00 39.76 3.02
189 190 8.697846 AAGAAACGATCTTGACATATAACGAA 57.302 30.769 7.30 0.00 46.71 3.85
190 191 8.697846 AGAAACGATCTTGACATATAACGAAA 57.302 30.769 0.00 0.00 33.39 3.46
191 192 9.146984 AGAAACGATCTTGACATATAACGAAAA 57.853 29.630 0.00 0.00 33.39 2.29
192 193 9.916397 GAAACGATCTTGACATATAACGAAAAT 57.084 29.630 0.00 0.00 0.00 1.82
193 194 9.702726 AAACGATCTTGACATATAACGAAAATG 57.297 29.630 0.00 0.00 0.00 2.32
194 195 8.420374 ACGATCTTGACATATAACGAAAATGT 57.580 30.769 0.00 0.00 36.57 2.71
195 196 9.524106 ACGATCTTGACATATAACGAAAATGTA 57.476 29.630 0.00 0.00 34.09 2.29
196 197 9.779237 CGATCTTGACATATAACGAAAATGTAC 57.221 33.333 0.00 0.00 34.09 2.90
202 203 9.980780 TGACATATAACGAAAATGTACAATGTG 57.019 29.630 0.00 0.00 34.09 3.21
203 204 9.982291 GACATATAACGAAAATGTACAATGTGT 57.018 29.630 0.00 0.69 34.09 3.72
350 351 9.685276 ATGTAGACATATGTTGAAAATCAAGGA 57.315 29.630 10.30 0.00 34.13 3.36
351 352 9.513906 TGTAGACATATGTTGAAAATCAAGGAA 57.486 29.630 10.30 0.00 37.00 3.36
352 353 9.994432 GTAGACATATGTTGAAAATCAAGGAAG 57.006 33.333 10.30 0.00 37.00 3.46
353 354 8.868522 AGACATATGTTGAAAATCAAGGAAGA 57.131 30.769 10.30 0.00 37.00 2.87
354 355 9.300681 AGACATATGTTGAAAATCAAGGAAGAA 57.699 29.630 10.30 0.00 37.00 2.52
355 356 9.565213 GACATATGTTGAAAATCAAGGAAGAAG 57.435 33.333 10.30 0.00 37.00 2.85
356 357 8.526147 ACATATGTTGAAAATCAAGGAAGAAGG 58.474 33.333 1.41 0.00 37.00 3.46
357 358 8.742777 CATATGTTGAAAATCAAGGAAGAAGGA 58.257 33.333 0.00 0.00 37.00 3.36
358 359 7.601705 ATGTTGAAAATCAAGGAAGAAGGAA 57.398 32.000 0.00 0.00 37.00 3.36
359 360 7.416964 TGTTGAAAATCAAGGAAGAAGGAAA 57.583 32.000 0.00 0.00 37.00 3.13
360 361 7.846066 TGTTGAAAATCAAGGAAGAAGGAAAA 58.154 30.769 0.00 0.00 37.00 2.29
361 362 8.317679 TGTTGAAAATCAAGGAAGAAGGAAAAA 58.682 29.630 0.00 0.00 37.00 1.94
362 363 9.330063 GTTGAAAATCAAGGAAGAAGGAAAAAT 57.670 29.630 0.00 0.00 37.00 1.82
363 364 8.891671 TGAAAATCAAGGAAGAAGGAAAAATG 57.108 30.769 0.00 0.00 0.00 2.32
364 365 7.933033 TGAAAATCAAGGAAGAAGGAAAAATGG 59.067 33.333 0.00 0.00 0.00 3.16
365 366 6.364568 AATCAAGGAAGAAGGAAAAATGGG 57.635 37.500 0.00 0.00 0.00 4.00
366 367 4.159557 TCAAGGAAGAAGGAAAAATGGGG 58.840 43.478 0.00 0.00 0.00 4.96
367 368 4.140805 TCAAGGAAGAAGGAAAAATGGGGA 60.141 41.667 0.00 0.00 0.00 4.81
368 369 4.053009 AGGAAGAAGGAAAAATGGGGAG 57.947 45.455 0.00 0.00 0.00 4.30
369 370 3.662642 AGGAAGAAGGAAAAATGGGGAGA 59.337 43.478 0.00 0.00 0.00 3.71
370 371 4.107961 AGGAAGAAGGAAAAATGGGGAGAA 59.892 41.667 0.00 0.00 0.00 2.87
371 372 4.220821 GGAAGAAGGAAAAATGGGGAGAAC 59.779 45.833 0.00 0.00 0.00 3.01
372 373 4.469469 AGAAGGAAAAATGGGGAGAACA 57.531 40.909 0.00 0.00 0.00 3.18
373 374 4.814967 AGAAGGAAAAATGGGGAGAACAA 58.185 39.130 0.00 0.00 0.00 2.83
374 375 5.215845 AGAAGGAAAAATGGGGAGAACAAA 58.784 37.500 0.00 0.00 0.00 2.83
375 376 5.305386 AGAAGGAAAAATGGGGAGAACAAAG 59.695 40.000 0.00 0.00 0.00 2.77
376 377 4.814967 AGGAAAAATGGGGAGAACAAAGA 58.185 39.130 0.00 0.00 0.00 2.52
377 378 5.215845 AGGAAAAATGGGGAGAACAAAGAA 58.784 37.500 0.00 0.00 0.00 2.52
378 379 5.305386 AGGAAAAATGGGGAGAACAAAGAAG 59.695 40.000 0.00 0.00 0.00 2.85
379 380 5.304357 GGAAAAATGGGGAGAACAAAGAAGA 59.696 40.000 0.00 0.00 0.00 2.87
380 381 6.410942 AAAAATGGGGAGAACAAAGAAGAG 57.589 37.500 0.00 0.00 0.00 2.85
381 382 4.731313 AATGGGGAGAACAAAGAAGAGT 57.269 40.909 0.00 0.00 0.00 3.24
382 383 3.492102 TGGGGAGAACAAAGAAGAGTG 57.508 47.619 0.00 0.00 0.00 3.51
383 384 3.045634 TGGGGAGAACAAAGAAGAGTGA 58.954 45.455 0.00 0.00 0.00 3.41
384 385 3.458118 TGGGGAGAACAAAGAAGAGTGAA 59.542 43.478 0.00 0.00 0.00 3.18
385 386 4.068599 GGGGAGAACAAAGAAGAGTGAAG 58.931 47.826 0.00 0.00 0.00 3.02
386 387 4.202367 GGGGAGAACAAAGAAGAGTGAAGA 60.202 45.833 0.00 0.00 0.00 2.87
387 388 4.994217 GGGAGAACAAAGAAGAGTGAAGAG 59.006 45.833 0.00 0.00 0.00 2.85
388 389 5.221541 GGGAGAACAAAGAAGAGTGAAGAGA 60.222 44.000 0.00 0.00 0.00 3.10
389 390 6.284459 GGAGAACAAAGAAGAGTGAAGAGAA 58.716 40.000 0.00 0.00 0.00 2.87
390 391 6.763610 GGAGAACAAAGAAGAGTGAAGAGAAA 59.236 38.462 0.00 0.00 0.00 2.52
391 392 7.281100 GGAGAACAAAGAAGAGTGAAGAGAAAA 59.719 37.037 0.00 0.00 0.00 2.29
392 393 7.980062 AGAACAAAGAAGAGTGAAGAGAAAAC 58.020 34.615 0.00 0.00 0.00 2.43
393 394 7.607991 AGAACAAAGAAGAGTGAAGAGAAAACA 59.392 33.333 0.00 0.00 0.00 2.83
394 395 7.687941 ACAAAGAAGAGTGAAGAGAAAACAA 57.312 32.000 0.00 0.00 0.00 2.83
395 396 7.756558 ACAAAGAAGAGTGAAGAGAAAACAAG 58.243 34.615 0.00 0.00 0.00 3.16
396 397 7.607991 ACAAAGAAGAGTGAAGAGAAAACAAGA 59.392 33.333 0.00 0.00 0.00 3.02
397 398 8.454106 CAAAGAAGAGTGAAGAGAAAACAAGAA 58.546 33.333 0.00 0.00 0.00 2.52
398 399 8.567285 AAGAAGAGTGAAGAGAAAACAAGAAA 57.433 30.769 0.00 0.00 0.00 2.52
399 400 8.567285 AGAAGAGTGAAGAGAAAACAAGAAAA 57.433 30.769 0.00 0.00 0.00 2.29
400 401 8.454894 AGAAGAGTGAAGAGAAAACAAGAAAAC 58.545 33.333 0.00 0.00 0.00 2.43
401 402 7.089770 AGAGTGAAGAGAAAACAAGAAAACC 57.910 36.000 0.00 0.00 0.00 3.27
402 403 6.887002 AGAGTGAAGAGAAAACAAGAAAACCT 59.113 34.615 0.00 0.00 0.00 3.50
403 404 7.066404 AGAGTGAAGAGAAAACAAGAAAACCTC 59.934 37.037 0.00 0.00 0.00 3.85
404 405 6.659242 AGTGAAGAGAAAACAAGAAAACCTCA 59.341 34.615 0.00 0.00 0.00 3.86
405 406 7.340487 AGTGAAGAGAAAACAAGAAAACCTCAT 59.660 33.333 0.00 0.00 0.00 2.90
406 407 8.621286 GTGAAGAGAAAACAAGAAAACCTCATA 58.379 33.333 0.00 0.00 0.00 2.15
407 408 9.184523 TGAAGAGAAAACAAGAAAACCTCATAA 57.815 29.630 0.00 0.00 0.00 1.90
412 413 9.599866 AGAAAACAAGAAAACCTCATAAAAAGG 57.400 29.630 0.00 0.00 39.96 3.11
413 414 8.731275 AAAACAAGAAAACCTCATAAAAAGGG 57.269 30.769 0.00 0.00 38.29 3.95
414 415 7.669089 AACAAGAAAACCTCATAAAAAGGGA 57.331 32.000 0.00 0.00 38.29 4.20
415 416 7.669089 ACAAGAAAACCTCATAAAAAGGGAA 57.331 32.000 0.00 0.00 38.29 3.97
416 417 7.726216 ACAAGAAAACCTCATAAAAAGGGAAG 58.274 34.615 0.00 0.00 38.29 3.46
417 418 7.563556 ACAAGAAAACCTCATAAAAAGGGAAGA 59.436 33.333 0.00 0.00 38.29 2.87
418 419 8.421002 CAAGAAAACCTCATAAAAAGGGAAGAA 58.579 33.333 0.00 0.00 38.29 2.52
419 420 8.547481 AGAAAACCTCATAAAAAGGGAAGAAA 57.453 30.769 0.00 0.00 38.29 2.52
420 421 9.159254 AGAAAACCTCATAAAAAGGGAAGAAAT 57.841 29.630 0.00 0.00 38.29 2.17
423 424 8.950007 AACCTCATAAAAAGGGAAGAAATACA 57.050 30.769 0.00 0.00 38.29 2.29
424 425 8.950007 ACCTCATAAAAAGGGAAGAAATACAA 57.050 30.769 0.00 0.00 38.29 2.41
425 426 9.025041 ACCTCATAAAAAGGGAAGAAATACAAG 57.975 33.333 0.00 0.00 38.29 3.16
426 427 9.243105 CCTCATAAAAAGGGAAGAAATACAAGA 57.757 33.333 0.00 0.00 0.00 3.02
434 435 9.764363 AAAGGGAAGAAATACAAGAAAAATCAC 57.236 29.630 0.00 0.00 0.00 3.06
435 436 8.712228 AGGGAAGAAATACAAGAAAAATCACT 57.288 30.769 0.00 0.00 0.00 3.41
436 437 9.147732 AGGGAAGAAATACAAGAAAAATCACTT 57.852 29.630 0.00 0.00 0.00 3.16
446 447 8.989653 ACAAGAAAAATCACTTAAAACCGAAA 57.010 26.923 0.00 0.00 0.00 3.46
447 448 9.425577 ACAAGAAAAATCACTTAAAACCGAAAA 57.574 25.926 0.00 0.00 0.00 2.29
454 455 7.617533 ATCACTTAAAACCGAAAAATGAACG 57.382 32.000 0.00 0.00 0.00 3.95
455 456 6.783162 TCACTTAAAACCGAAAAATGAACGA 58.217 32.000 0.00 0.00 0.00 3.85
456 457 7.249147 TCACTTAAAACCGAAAAATGAACGAA 58.751 30.769 0.00 0.00 0.00 3.85
457 458 7.429920 TCACTTAAAACCGAAAAATGAACGAAG 59.570 33.333 0.00 0.00 0.00 3.79
458 459 7.429920 CACTTAAAACCGAAAAATGAACGAAGA 59.570 33.333 0.00 0.00 0.00 2.87
459 460 7.969508 ACTTAAAACCGAAAAATGAACGAAGAA 59.030 29.630 0.00 0.00 0.00 2.52
460 461 8.684973 TTAAAACCGAAAAATGAACGAAGAAA 57.315 26.923 0.00 0.00 0.00 2.52
461 462 7.583860 AAAACCGAAAAATGAACGAAGAAAA 57.416 28.000 0.00 0.00 0.00 2.29
462 463 6.563398 AACCGAAAAATGAACGAAGAAAAC 57.437 33.333 0.00 0.00 0.00 2.43
463 464 5.038683 ACCGAAAAATGAACGAAGAAAACC 58.961 37.500 0.00 0.00 0.00 3.27
464 465 4.145756 CCGAAAAATGAACGAAGAAAACCG 59.854 41.667 0.00 0.00 0.00 4.44
465 466 4.965158 CGAAAAATGAACGAAGAAAACCGA 59.035 37.500 0.00 0.00 0.00 4.69
466 467 5.623673 CGAAAAATGAACGAAGAAAACCGAT 59.376 36.000 0.00 0.00 0.00 4.18
467 468 6.397480 CGAAAAATGAACGAAGAAAACCGATG 60.397 38.462 0.00 0.00 0.00 3.84
468 469 5.682943 AAATGAACGAAGAAAACCGATGA 57.317 34.783 0.00 0.00 0.00 2.92
469 470 5.682943 AATGAACGAAGAAAACCGATGAA 57.317 34.783 0.00 0.00 0.00 2.57
470 471 5.682943 ATGAACGAAGAAAACCGATGAAA 57.317 34.783 0.00 0.00 0.00 2.69
471 472 5.487153 TGAACGAAGAAAACCGATGAAAA 57.513 34.783 0.00 0.00 0.00 2.29
472 473 5.881447 TGAACGAAGAAAACCGATGAAAAA 58.119 33.333 0.00 0.00 0.00 1.94
473 474 5.740099 TGAACGAAGAAAACCGATGAAAAAC 59.260 36.000 0.00 0.00 0.00 2.43
474 475 5.238006 ACGAAGAAAACCGATGAAAAACA 57.762 34.783 0.00 0.00 0.00 2.83
475 476 5.642686 ACGAAGAAAACCGATGAAAAACAA 58.357 33.333 0.00 0.00 0.00 2.83
476 477 6.094061 ACGAAGAAAACCGATGAAAAACAAA 58.906 32.000 0.00 0.00 0.00 2.83
477 478 6.252655 ACGAAGAAAACCGATGAAAAACAAAG 59.747 34.615 0.00 0.00 0.00 2.77
478 479 6.470877 CGAAGAAAACCGATGAAAAACAAAGA 59.529 34.615 0.00 0.00 0.00 2.52
479 480 7.008810 CGAAGAAAACCGATGAAAAACAAAGAA 59.991 33.333 0.00 0.00 0.00 2.52
480 481 8.541133 AAGAAAACCGATGAAAAACAAAGAAA 57.459 26.923 0.00 0.00 0.00 2.52
481 482 8.185003 AGAAAACCGATGAAAAACAAAGAAAG 57.815 30.769 0.00 0.00 0.00 2.62
482 483 8.032451 AGAAAACCGATGAAAAACAAAGAAAGA 58.968 29.630 0.00 0.00 0.00 2.52
483 484 7.520119 AAACCGATGAAAAACAAAGAAAGAC 57.480 32.000 0.00 0.00 0.00 3.01
484 485 6.202516 ACCGATGAAAAACAAAGAAAGACA 57.797 33.333 0.00 0.00 0.00 3.41
485 486 6.265577 ACCGATGAAAAACAAAGAAAGACAG 58.734 36.000 0.00 0.00 0.00 3.51
486 487 6.094881 ACCGATGAAAAACAAAGAAAGACAGA 59.905 34.615 0.00 0.00 0.00 3.41
487 488 6.972328 CCGATGAAAAACAAAGAAAGACAGAA 59.028 34.615 0.00 0.00 0.00 3.02
488 489 7.487829 CCGATGAAAAACAAAGAAAGACAGAAA 59.512 33.333 0.00 0.00 0.00 2.52
489 490 8.859156 CGATGAAAAACAAAGAAAGACAGAAAA 58.141 29.630 0.00 0.00 0.00 2.29
490 491 9.958285 GATGAAAAACAAAGAAAGACAGAAAAC 57.042 29.630 0.00 0.00 0.00 2.43
491 492 8.305441 TGAAAAACAAAGAAAGACAGAAAACC 57.695 30.769 0.00 0.00 0.00 3.27
492 493 7.928706 TGAAAAACAAAGAAAGACAGAAAACCA 59.071 29.630 0.00 0.00 0.00 3.67
493 494 8.669946 AAAAACAAAGAAAGACAGAAAACCAA 57.330 26.923 0.00 0.00 0.00 3.67
494 495 8.669946 AAAACAAAGAAAGACAGAAAACCAAA 57.330 26.923 0.00 0.00 0.00 3.28
495 496 7.889589 AACAAAGAAAGACAGAAAACCAAAG 57.110 32.000 0.00 0.00 0.00 2.77
496 497 7.227049 ACAAAGAAAGACAGAAAACCAAAGA 57.773 32.000 0.00 0.00 0.00 2.52
497 498 7.666623 ACAAAGAAAGACAGAAAACCAAAGAA 58.333 30.769 0.00 0.00 0.00 2.52
498 499 8.147704 ACAAAGAAAGACAGAAAACCAAAGAAA 58.852 29.630 0.00 0.00 0.00 2.52
499 500 8.987890 CAAAGAAAGACAGAAAACCAAAGAAAA 58.012 29.630 0.00 0.00 0.00 2.29
500 501 8.763049 AAGAAAGACAGAAAACCAAAGAAAAG 57.237 30.769 0.00 0.00 0.00 2.27
501 502 6.813649 AGAAAGACAGAAAACCAAAGAAAAGC 59.186 34.615 0.00 0.00 0.00 3.51
502 503 5.659440 AGACAGAAAACCAAAGAAAAGCA 57.341 34.783 0.00 0.00 0.00 3.91
503 504 5.654497 AGACAGAAAACCAAAGAAAAGCAG 58.346 37.500 0.00 0.00 0.00 4.24
504 505 5.185828 AGACAGAAAACCAAAGAAAAGCAGT 59.814 36.000 0.00 0.00 0.00 4.40
505 506 5.170748 ACAGAAAACCAAAGAAAAGCAGTG 58.829 37.500 0.00 0.00 0.00 3.66
518 519 3.951979 AAGCAGTGACGAAACAAAGAG 57.048 42.857 0.00 0.00 0.00 2.85
531 532 7.244192 ACGAAACAAAGAGAACTGAAGAAAAG 58.756 34.615 0.00 0.00 0.00 2.27
532 533 6.195428 CGAAACAAAGAGAACTGAAGAAAAGC 59.805 38.462 0.00 0.00 0.00 3.51
533 534 6.515272 AACAAAGAGAACTGAAGAAAAGCA 57.485 33.333 0.00 0.00 0.00 3.91
573 577 2.841442 AGACCCGAAGAAAACCAGAG 57.159 50.000 0.00 0.00 0.00 3.35
574 578 1.157585 GACCCGAAGAAAACCAGAGC 58.842 55.000 0.00 0.00 0.00 4.09
575 579 0.602905 ACCCGAAGAAAACCAGAGCG 60.603 55.000 0.00 0.00 0.00 5.03
576 580 0.320421 CCCGAAGAAAACCAGAGCGA 60.320 55.000 0.00 0.00 0.00 4.93
577 581 1.508632 CCGAAGAAAACCAGAGCGAA 58.491 50.000 0.00 0.00 0.00 4.70
578 582 1.194772 CCGAAGAAAACCAGAGCGAAC 59.805 52.381 0.00 0.00 0.00 3.95
579 583 1.136611 CGAAGAAAACCAGAGCGAACG 60.137 52.381 0.00 0.00 0.00 3.95
580 584 2.132762 GAAGAAAACCAGAGCGAACGA 58.867 47.619 0.00 0.00 0.00 3.85
581 585 1.784525 AGAAAACCAGAGCGAACGAG 58.215 50.000 0.00 0.00 0.00 4.18
582 586 0.164002 GAAAACCAGAGCGAACGAGC 59.836 55.000 0.00 0.00 37.41 5.03
583 587 1.557443 AAAACCAGAGCGAACGAGCG 61.557 55.000 0.00 0.00 43.00 5.03
584 588 2.416244 AAACCAGAGCGAACGAGCGA 62.416 55.000 5.91 0.00 43.00 4.93
585 589 2.126463 CCAGAGCGAACGAGCGAA 60.126 61.111 5.91 0.00 43.00 4.70
586 590 2.437343 CCAGAGCGAACGAGCGAAC 61.437 63.158 5.91 0.00 43.00 3.95
587 591 2.502080 AGAGCGAACGAGCGAACG 60.502 61.111 5.91 3.23 43.00 3.95
588 592 2.501222 GAGCGAACGAGCGAACGA 60.501 61.111 14.32 0.00 43.00 3.85
598 610 1.057847 CGAGCGAACGAATGAACTGAC 59.942 52.381 0.00 0.00 35.09 3.51
607 619 6.347402 CGAACGAATGAACTGACAAAATAGGT 60.347 38.462 0.00 0.00 0.00 3.08
621 633 2.930826 ATAGGTCGCCCCAAATACTG 57.069 50.000 0.00 0.00 34.66 2.74
640 652 0.174617 GTAGCGCAGAGGAGAAAGCT 59.825 55.000 11.47 0.00 38.57 3.74
642 654 0.673022 AGCGCAGAGGAGAAAGCTTG 60.673 55.000 11.47 0.00 0.00 4.01
662 674 1.852895 GTGGCGAGCGTATCTTACAAG 59.147 52.381 0.00 0.00 0.00 3.16
668 680 2.784380 GAGCGTATCTTACAAGTCGCTG 59.216 50.000 23.48 3.06 44.24 5.18
687 699 3.167425 CTGTAAGCGAGATATAGCTGCG 58.833 50.000 0.00 0.30 43.78 5.18
741 754 2.747686 CGTGGTAGGCCTGGTTGT 59.252 61.111 17.99 0.00 35.27 3.32
1313 3743 1.437986 GCGTCTCCTGCCGTAAGAT 59.562 57.895 0.00 0.00 43.02 2.40
1315 3745 0.738975 CGTCTCCTGCCGTAAGATCA 59.261 55.000 0.00 0.00 43.02 2.92
1316 3746 1.338337 CGTCTCCTGCCGTAAGATCAT 59.662 52.381 0.00 0.00 43.02 2.45
1317 3747 2.223829 CGTCTCCTGCCGTAAGATCATT 60.224 50.000 0.00 0.00 43.02 2.57
1318 3748 3.004419 CGTCTCCTGCCGTAAGATCATTA 59.996 47.826 0.00 0.00 43.02 1.90
1319 3749 4.321304 CGTCTCCTGCCGTAAGATCATTAT 60.321 45.833 0.00 0.00 43.02 1.28
1320 3750 5.106277 CGTCTCCTGCCGTAAGATCATTATA 60.106 44.000 0.00 0.00 43.02 0.98
1330 3760 7.387948 GCCGTAAGATCATTATAAACACTCCAT 59.612 37.037 0.00 0.00 43.02 3.41
1336 3766 8.162085 AGATCATTATAAACACTCCATGCTGAT 58.838 33.333 0.00 0.00 0.00 2.90
1338 3768 7.933396 TCATTATAAACACTCCATGCTGATTG 58.067 34.615 0.00 0.00 0.00 2.67
1341 3771 8.523915 TTATAAACACTCCATGCTGATTGATT 57.476 30.769 0.00 0.00 0.00 2.57
1346 3776 4.338400 CACTCCATGCTGATTGATTCATGT 59.662 41.667 0.00 0.00 35.72 3.21
1353 3783 3.792459 GCTGATTGATTCATGTGCTGCTC 60.792 47.826 0.00 0.00 32.72 4.26
1357 3791 2.902523 TGATTCATGTGCTGCTCTCTC 58.097 47.619 0.00 0.00 0.00 3.20
1368 3804 2.940527 GCTGCTCTCTCTTTGCCTGAAT 60.941 50.000 0.00 0.00 0.00 2.57
1369 3805 3.681034 GCTGCTCTCTCTTTGCCTGAATA 60.681 47.826 0.00 0.00 0.00 1.75
1370 3806 4.706035 CTGCTCTCTCTTTGCCTGAATAT 58.294 43.478 0.00 0.00 0.00 1.28
1371 3807 4.701765 TGCTCTCTCTTTGCCTGAATATC 58.298 43.478 0.00 0.00 0.00 1.63
1391 3827 3.215151 TCTATCTAGCTGAACTGACGGG 58.785 50.000 0.00 0.00 0.00 5.28
1407 3843 2.675423 GGCTCCCGGTTGTTTCCC 60.675 66.667 0.00 0.00 0.00 3.97
1418 3859 2.223805 GGTTGTTTCCCTTTGACTGCTG 60.224 50.000 0.00 0.00 0.00 4.41
1419 3860 1.032014 TGTTTCCCTTTGACTGCTGC 58.968 50.000 0.00 0.00 0.00 5.25
1420 3861 0.315251 GTTTCCCTTTGACTGCTGCC 59.685 55.000 0.00 0.00 0.00 4.85
1442 3883 2.229589 GCAGAGTGATCGCTCGCTG 61.230 63.158 29.28 23.85 42.28 5.18
1466 3907 1.666054 GCTCCATGCAAGAAGAGGAG 58.334 55.000 11.81 11.81 46.71 3.69
1483 3924 2.559231 AGGAGGAACTGAAGAAGACGAC 59.441 50.000 0.00 0.00 41.55 4.34
1495 3936 6.258899 TGAAGAAGACGACGATGAATAAGAG 58.741 40.000 0.00 0.00 0.00 2.85
1496 3937 6.093633 TGAAGAAGACGACGATGAATAAGAGA 59.906 38.462 0.00 0.00 0.00 3.10
1551 3993 1.479709 CAGTGCCTAGTAGCTGTCCT 58.520 55.000 0.00 0.00 0.00 3.85
1554 3996 1.135333 GTGCCTAGTAGCTGTCCTGTC 59.865 57.143 0.00 0.00 0.00 3.51
1628 4074 7.201652 GCCTCTGTTGAAGGTCAGATTAATAAC 60.202 40.741 0.00 0.00 39.48 1.89
1629 4075 7.824289 CCTCTGTTGAAGGTCAGATTAATAACA 59.176 37.037 0.00 0.00 39.48 2.41
1630 4076 9.219603 CTCTGTTGAAGGTCAGATTAATAACAA 57.780 33.333 0.00 0.00 39.48 2.83
1631 4077 9.739276 TCTGTTGAAGGTCAGATTAATAACAAT 57.261 29.630 0.00 0.00 36.04 2.71
1656 4102 3.742433 ATGAAACCAATTTGCACCGAA 57.258 38.095 0.00 0.00 0.00 4.30
1704 4151 2.765689 ACCCACAATGAAACCAAGGA 57.234 45.000 0.00 0.00 0.00 3.36
1712 4159 6.239402 CCACAATGAAACCAAGGAATCTTTCT 60.239 38.462 0.00 0.00 0.00 2.52
1738 4185 7.220875 TCTCTCTGAAACGAACAATGATTATCG 59.779 37.037 9.95 9.95 40.90 2.92
1773 4224 5.702865 CGCATTCATAACCAAATATCCTGG 58.297 41.667 2.86 2.86 40.05 4.45
1799 4250 5.350365 TCCGTTGCTGATCACTGTTTTATAC 59.650 40.000 0.00 0.00 0.00 1.47
1800 4251 5.447279 CCGTTGCTGATCACTGTTTTATACC 60.447 44.000 0.00 0.00 0.00 2.73
1840 4291 0.321210 ATGCGAACCGTTCCACATCA 60.321 50.000 5.67 0.00 0.00 3.07
1961 4413 2.522705 AGATGGTGGTATCCCTAGGTGA 59.477 50.000 8.29 5.19 0.00 4.02
1966 4418 1.133136 TGGTATCCCTAGGTGAGGCTC 60.133 57.143 7.79 7.79 45.17 4.70
2042 4494 5.163884 GCTTGTTAACCCGAGATCAGTAAAC 60.164 44.000 2.48 0.00 0.00 2.01
2108 4560 3.149196 CCTTACCTGCAAGACACACAAT 58.851 45.455 0.00 0.00 34.07 2.71
2110 4562 1.321474 ACCTGCAAGACACACAATGG 58.679 50.000 0.00 0.00 34.07 3.16
2117 4569 6.007936 TGCAAGACACACAATGGTAAATAC 57.992 37.500 0.00 0.00 0.00 1.89
2141 4594 0.824109 CCGGATGGCAGTAAGAGTCA 59.176 55.000 0.00 0.00 0.00 3.41
2220 4732 7.120579 TCACACTTCAAGTTACATTTGAACAGT 59.879 33.333 0.00 0.00 39.05 3.55
2268 4780 6.631016 TGAAAAGCTGATGATAACTACTCGT 58.369 36.000 0.00 0.00 0.00 4.18
2269 4781 7.097192 TGAAAAGCTGATGATAACTACTCGTT 58.903 34.615 0.00 0.00 39.64 3.85
2270 4782 6.893958 AAAGCTGATGATAACTACTCGTTG 57.106 37.500 0.00 0.00 37.05 4.10
2271 4783 4.363999 AGCTGATGATAACTACTCGTTGC 58.636 43.478 0.00 0.00 37.05 4.17
2272 4784 4.112634 GCTGATGATAACTACTCGTTGCA 58.887 43.478 0.00 0.00 37.05 4.08
2274 4786 5.500931 GCTGATGATAACTACTCGTTGCAAC 60.501 44.000 19.89 19.89 37.05 4.17
2275 4787 5.720202 TGATGATAACTACTCGTTGCAACT 58.280 37.500 26.09 11.27 37.05 3.16
2277 4789 5.839262 TGATAACTACTCGTTGCAACTTG 57.161 39.130 26.09 19.64 37.05 3.16
2278 4790 4.151689 TGATAACTACTCGTTGCAACTTGC 59.848 41.667 26.09 6.82 45.29 4.01
2289 4801 0.523519 GCAACTTGCAAGCTACTCCC 59.476 55.000 26.27 4.43 44.26 4.30
2290 4802 1.884067 GCAACTTGCAAGCTACTCCCT 60.884 52.381 26.27 0.83 44.26 4.20
2291 4803 2.079925 CAACTTGCAAGCTACTCCCTC 58.920 52.381 26.27 0.00 0.00 4.30
2292 4804 1.650528 ACTTGCAAGCTACTCCCTCT 58.349 50.000 26.27 0.00 0.00 3.69
2293 4805 1.277557 ACTTGCAAGCTACTCCCTCTG 59.722 52.381 26.27 0.00 0.00 3.35
2294 4806 1.277557 CTTGCAAGCTACTCCCTCTGT 59.722 52.381 14.65 0.00 0.00 3.41
2295 4807 0.898320 TGCAAGCTACTCCCTCTGTC 59.102 55.000 0.00 0.00 0.00 3.51
2296 4808 1.190643 GCAAGCTACTCCCTCTGTCT 58.809 55.000 0.00 0.00 0.00 3.41
2297 4809 1.136110 GCAAGCTACTCCCTCTGTCTC 59.864 57.143 0.00 0.00 0.00 3.36
2298 4810 2.451490 CAAGCTACTCCCTCTGTCTCA 58.549 52.381 0.00 0.00 0.00 3.27
2299 4811 2.828520 CAAGCTACTCCCTCTGTCTCAA 59.171 50.000 0.00 0.00 0.00 3.02
2300 4812 3.176924 AGCTACTCCCTCTGTCTCAAA 57.823 47.619 0.00 0.00 0.00 2.69
2301 4813 3.511477 AGCTACTCCCTCTGTCTCAAAA 58.489 45.455 0.00 0.00 0.00 2.44
2302 4814 4.100373 AGCTACTCCCTCTGTCTCAAAAT 58.900 43.478 0.00 0.00 0.00 1.82
2303 4815 4.081198 AGCTACTCCCTCTGTCTCAAAATG 60.081 45.833 0.00 0.00 0.00 2.32
2304 4816 4.323104 GCTACTCCCTCTGTCTCAAAATGT 60.323 45.833 0.00 0.00 0.00 2.71
2305 4817 5.105310 GCTACTCCCTCTGTCTCAAAATGTA 60.105 44.000 0.00 0.00 0.00 2.29
2306 4818 5.825593 ACTCCCTCTGTCTCAAAATGTAA 57.174 39.130 0.00 0.00 0.00 2.41
2307 4819 5.799213 ACTCCCTCTGTCTCAAAATGTAAG 58.201 41.667 0.00 0.00 0.00 2.34
2308 4820 5.165961 TCCCTCTGTCTCAAAATGTAAGG 57.834 43.478 0.00 0.00 0.00 2.69
2309 4821 3.691609 CCCTCTGTCTCAAAATGTAAGGC 59.308 47.826 0.00 0.00 0.00 4.35
2310 4822 3.372206 CCTCTGTCTCAAAATGTAAGGCG 59.628 47.826 0.00 0.00 0.00 5.52
2311 4823 3.997021 CTCTGTCTCAAAATGTAAGGCGT 59.003 43.478 0.00 0.00 0.00 5.68
2312 4824 4.385825 TCTGTCTCAAAATGTAAGGCGTT 58.614 39.130 0.00 0.00 0.00 4.84
2313 4825 4.819630 TCTGTCTCAAAATGTAAGGCGTTT 59.180 37.500 0.00 0.00 37.88 3.60
2314 4826 5.298276 TCTGTCTCAAAATGTAAGGCGTTTT 59.702 36.000 0.00 0.00 44.53 2.43
2315 4827 6.483974 TCTGTCTCAAAATGTAAGGCGTTTTA 59.516 34.615 0.00 0.00 42.53 1.52
2316 4828 7.012515 TCTGTCTCAAAATGTAAGGCGTTTTAA 59.987 33.333 0.00 0.00 42.53 1.52
2317 4829 7.481642 TGTCTCAAAATGTAAGGCGTTTTAAA 58.518 30.769 0.00 0.00 42.53 1.52
2318 4830 8.138712 TGTCTCAAAATGTAAGGCGTTTTAAAT 58.861 29.630 0.00 0.00 42.53 1.40
2319 4831 8.424731 GTCTCAAAATGTAAGGCGTTTTAAATG 58.575 33.333 0.00 0.00 42.53 2.32
2320 4832 8.138712 TCTCAAAATGTAAGGCGTTTTAAATGT 58.861 29.630 0.00 0.00 42.53 2.71
2321 4833 9.400638 CTCAAAATGTAAGGCGTTTTAAATGTA 57.599 29.630 0.00 0.00 42.53 2.29
2322 4834 9.745880 TCAAAATGTAAGGCGTTTTAAATGTAA 57.254 25.926 0.00 0.00 42.53 2.41
2324 4836 9.968870 AAAATGTAAGGCGTTTTAAATGTAAGA 57.031 25.926 0.00 0.00 42.58 2.10
2325 4837 8.959734 AATGTAAGGCGTTTTAAATGTAAGAC 57.040 30.769 0.00 0.00 0.00 3.01
2326 4838 6.592166 TGTAAGGCGTTTTAAATGTAAGACG 58.408 36.000 13.05 13.05 45.70 4.18
2327 4839 5.678132 AAGGCGTTTTAAATGTAAGACGT 57.322 34.783 17.25 0.00 45.08 4.34
2328 4840 5.678132 AGGCGTTTTAAATGTAAGACGTT 57.322 34.783 17.25 6.39 45.08 3.99
2329 4841 6.063640 AGGCGTTTTAAATGTAAGACGTTT 57.936 33.333 17.25 6.10 45.08 3.60
2330 4842 6.138088 AGGCGTTTTAAATGTAAGACGTTTC 58.862 36.000 17.25 9.43 45.08 2.78
2331 4843 5.908499 GGCGTTTTAAATGTAAGACGTTTCA 59.092 36.000 17.25 0.00 45.08 2.69
2332 4844 6.414402 GGCGTTTTAAATGTAAGACGTTTCAA 59.586 34.615 17.25 0.00 45.08 2.69
2333 4845 7.044183 GGCGTTTTAAATGTAAGACGTTTCAAA 60.044 33.333 17.25 0.91 45.08 2.69
2334 4846 8.312524 GCGTTTTAAATGTAAGACGTTTCAAAA 58.687 29.630 17.25 4.67 45.08 2.44
2340 4852 8.973835 AAATGTAAGACGTTTCAAAAACTTCA 57.026 26.923 10.45 0.00 32.22 3.02
2341 4853 9.581099 AAATGTAAGACGTTTCAAAAACTTCAT 57.419 25.926 10.45 3.04 32.22 2.57
2342 4854 7.962934 TGTAAGACGTTTCAAAAACTTCATG 57.037 32.000 10.45 0.00 0.00 3.07
2409 4921 9.822727 TCCCACTAGATATACTTGAATGTATCA 57.177 33.333 0.00 0.00 35.14 2.15
2426 4938 8.480643 AATGTATCAAGAGTAAAAAGACGGAG 57.519 34.615 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 9.727859 ACACAGTACATTTTTGGTATACATACA 57.272 29.630 5.01 0.00 34.98 2.29
84 85 9.982291 CACACAGTACATTTTTGGTATACATAC 57.018 33.333 5.01 0.00 0.00 2.39
85 86 9.727859 ACACACAGTACATTTTTGGTATACATA 57.272 29.630 5.01 0.00 0.00 2.29
86 87 8.630054 ACACACAGTACATTTTTGGTATACAT 57.370 30.769 5.01 0.00 0.00 2.29
149 150 9.771915 AGATCGTTTCTTTAAAACACGTTTAAA 57.228 25.926 11.24 4.17 45.29 1.52
150 151 9.771915 AAGATCGTTTCTTTAAAACACGTTTAA 57.228 25.926 11.24 0.00 42.15 1.52
151 152 9.212687 CAAGATCGTTTCTTTAAAACACGTTTA 57.787 29.630 11.24 0.00 42.15 2.01
152 153 7.964011 TCAAGATCGTTTCTTTAAAACACGTTT 59.036 29.630 11.24 0.00 42.15 3.60
153 154 7.427318 GTCAAGATCGTTTCTTTAAAACACGTT 59.573 33.333 11.24 5.52 42.15 3.99
154 155 6.903479 GTCAAGATCGTTTCTTTAAAACACGT 59.097 34.615 11.24 0.00 42.15 4.49
155 156 6.902948 TGTCAAGATCGTTTCTTTAAAACACG 59.097 34.615 7.00 7.00 42.15 4.49
156 157 8.782533 ATGTCAAGATCGTTTCTTTAAAACAC 57.217 30.769 1.44 0.00 42.15 3.32
162 163 9.791820 TCGTTATATGTCAAGATCGTTTCTTTA 57.208 29.630 1.44 0.00 42.15 1.85
163 164 8.697846 TCGTTATATGTCAAGATCGTTTCTTT 57.302 30.769 1.44 0.00 42.15 2.52
164 165 8.697846 TTCGTTATATGTCAAGATCGTTTCTT 57.302 30.769 0.00 0.00 45.83 2.52
165 166 8.697846 TTTCGTTATATGTCAAGATCGTTTCT 57.302 30.769 0.00 0.00 35.70 2.52
166 167 9.916397 ATTTTCGTTATATGTCAAGATCGTTTC 57.084 29.630 0.00 0.00 0.00 2.78
167 168 9.702726 CATTTTCGTTATATGTCAAGATCGTTT 57.297 29.630 0.00 0.00 0.00 3.60
168 169 8.879759 ACATTTTCGTTATATGTCAAGATCGTT 58.120 29.630 0.00 0.00 0.00 3.85
169 170 8.420374 ACATTTTCGTTATATGTCAAGATCGT 57.580 30.769 0.00 0.00 0.00 3.73
170 171 9.779237 GTACATTTTCGTTATATGTCAAGATCG 57.221 33.333 0.00 0.00 34.55 3.69
176 177 9.980780 CACATTGTACATTTTCGTTATATGTCA 57.019 29.630 0.00 0.00 34.55 3.58
177 178 9.982291 ACACATTGTACATTTTCGTTATATGTC 57.018 29.630 0.00 0.00 34.55 3.06
324 325 9.685276 TCCTTGATTTTCAACATATGTCTACAT 57.315 29.630 9.23 0.63 35.08 2.29
325 326 9.513906 TTCCTTGATTTTCAACATATGTCTACA 57.486 29.630 9.23 0.97 32.21 2.74
326 327 9.994432 CTTCCTTGATTTTCAACATATGTCTAC 57.006 33.333 9.23 0.00 32.21 2.59
327 328 9.958180 TCTTCCTTGATTTTCAACATATGTCTA 57.042 29.630 9.23 0.00 32.21 2.59
328 329 8.868522 TCTTCCTTGATTTTCAACATATGTCT 57.131 30.769 9.23 0.00 32.21 3.41
329 330 9.565213 CTTCTTCCTTGATTTTCAACATATGTC 57.435 33.333 9.23 0.00 32.21 3.06
330 331 8.526147 CCTTCTTCCTTGATTTTCAACATATGT 58.474 33.333 1.41 1.41 32.21 2.29
331 332 8.742777 TCCTTCTTCCTTGATTTTCAACATATG 58.257 33.333 0.00 0.00 32.21 1.78
332 333 8.884124 TCCTTCTTCCTTGATTTTCAACATAT 57.116 30.769 0.00 0.00 32.21 1.78
333 334 8.704849 TTCCTTCTTCCTTGATTTTCAACATA 57.295 30.769 0.00 0.00 32.21 2.29
334 335 7.601705 TTCCTTCTTCCTTGATTTTCAACAT 57.398 32.000 0.00 0.00 32.21 2.71
335 336 7.416964 TTTCCTTCTTCCTTGATTTTCAACA 57.583 32.000 0.00 0.00 32.21 3.33
336 337 8.716646 TTTTTCCTTCTTCCTTGATTTTCAAC 57.283 30.769 0.00 0.00 32.21 3.18
337 338 9.328845 CATTTTTCCTTCTTCCTTGATTTTCAA 57.671 29.630 0.00 0.00 34.79 2.69
338 339 7.933033 CCATTTTTCCTTCTTCCTTGATTTTCA 59.067 33.333 0.00 0.00 0.00 2.69
339 340 7.388776 CCCATTTTTCCTTCTTCCTTGATTTTC 59.611 37.037 0.00 0.00 0.00 2.29
340 341 7.226441 CCCATTTTTCCTTCTTCCTTGATTTT 58.774 34.615 0.00 0.00 0.00 1.82
341 342 6.239973 CCCCATTTTTCCTTCTTCCTTGATTT 60.240 38.462 0.00 0.00 0.00 2.17
342 343 5.249163 CCCCATTTTTCCTTCTTCCTTGATT 59.751 40.000 0.00 0.00 0.00 2.57
343 344 4.779489 CCCCATTTTTCCTTCTTCCTTGAT 59.221 41.667 0.00 0.00 0.00 2.57
344 345 4.140805 TCCCCATTTTTCCTTCTTCCTTGA 60.141 41.667 0.00 0.00 0.00 3.02
345 346 4.159557 TCCCCATTTTTCCTTCTTCCTTG 58.840 43.478 0.00 0.00 0.00 3.61
346 347 4.107961 TCTCCCCATTTTTCCTTCTTCCTT 59.892 41.667 0.00 0.00 0.00 3.36
347 348 3.662642 TCTCCCCATTTTTCCTTCTTCCT 59.337 43.478 0.00 0.00 0.00 3.36
348 349 4.047627 TCTCCCCATTTTTCCTTCTTCC 57.952 45.455 0.00 0.00 0.00 3.46
349 350 4.832823 TGTTCTCCCCATTTTTCCTTCTTC 59.167 41.667 0.00 0.00 0.00 2.87
350 351 4.814967 TGTTCTCCCCATTTTTCCTTCTT 58.185 39.130 0.00 0.00 0.00 2.52
351 352 4.469469 TGTTCTCCCCATTTTTCCTTCT 57.531 40.909 0.00 0.00 0.00 2.85
352 353 5.304357 TCTTTGTTCTCCCCATTTTTCCTTC 59.696 40.000 0.00 0.00 0.00 3.46
353 354 5.215845 TCTTTGTTCTCCCCATTTTTCCTT 58.784 37.500 0.00 0.00 0.00 3.36
354 355 4.814967 TCTTTGTTCTCCCCATTTTTCCT 58.185 39.130 0.00 0.00 0.00 3.36
355 356 5.304357 TCTTCTTTGTTCTCCCCATTTTTCC 59.696 40.000 0.00 0.00 0.00 3.13
356 357 6.040955 ACTCTTCTTTGTTCTCCCCATTTTTC 59.959 38.462 0.00 0.00 0.00 2.29
357 358 5.899547 ACTCTTCTTTGTTCTCCCCATTTTT 59.100 36.000 0.00 0.00 0.00 1.94
358 359 5.302823 CACTCTTCTTTGTTCTCCCCATTTT 59.697 40.000 0.00 0.00 0.00 1.82
359 360 4.829492 CACTCTTCTTTGTTCTCCCCATTT 59.171 41.667 0.00 0.00 0.00 2.32
360 361 4.104738 TCACTCTTCTTTGTTCTCCCCATT 59.895 41.667 0.00 0.00 0.00 3.16
361 362 3.652869 TCACTCTTCTTTGTTCTCCCCAT 59.347 43.478 0.00 0.00 0.00 4.00
362 363 3.045634 TCACTCTTCTTTGTTCTCCCCA 58.954 45.455 0.00 0.00 0.00 4.96
363 364 3.771577 TCACTCTTCTTTGTTCTCCCC 57.228 47.619 0.00 0.00 0.00 4.81
364 365 4.962155 TCTTCACTCTTCTTTGTTCTCCC 58.038 43.478 0.00 0.00 0.00 4.30
365 366 5.848406 TCTCTTCACTCTTCTTTGTTCTCC 58.152 41.667 0.00 0.00 0.00 3.71
366 367 7.778470 TTTCTCTTCACTCTTCTTTGTTCTC 57.222 36.000 0.00 0.00 0.00 2.87
367 368 7.607991 TGTTTTCTCTTCACTCTTCTTTGTTCT 59.392 33.333 0.00 0.00 0.00 3.01
368 369 7.752695 TGTTTTCTCTTCACTCTTCTTTGTTC 58.247 34.615 0.00 0.00 0.00 3.18
369 370 7.687941 TGTTTTCTCTTCACTCTTCTTTGTT 57.312 32.000 0.00 0.00 0.00 2.83
370 371 7.607991 TCTTGTTTTCTCTTCACTCTTCTTTGT 59.392 33.333 0.00 0.00 0.00 2.83
371 372 7.978982 TCTTGTTTTCTCTTCACTCTTCTTTG 58.021 34.615 0.00 0.00 0.00 2.77
372 373 8.567285 TTCTTGTTTTCTCTTCACTCTTCTTT 57.433 30.769 0.00 0.00 0.00 2.52
373 374 8.567285 TTTCTTGTTTTCTCTTCACTCTTCTT 57.433 30.769 0.00 0.00 0.00 2.52
374 375 8.454894 GTTTTCTTGTTTTCTCTTCACTCTTCT 58.545 33.333 0.00 0.00 0.00 2.85
375 376 7.698550 GGTTTTCTTGTTTTCTCTTCACTCTTC 59.301 37.037 0.00 0.00 0.00 2.87
376 377 7.394641 AGGTTTTCTTGTTTTCTCTTCACTCTT 59.605 33.333 0.00 0.00 0.00 2.85
377 378 6.887002 AGGTTTTCTTGTTTTCTCTTCACTCT 59.113 34.615 0.00 0.00 0.00 3.24
378 379 7.089770 AGGTTTTCTTGTTTTCTCTTCACTC 57.910 36.000 0.00 0.00 0.00 3.51
379 380 6.659242 TGAGGTTTTCTTGTTTTCTCTTCACT 59.341 34.615 0.00 0.00 0.00 3.41
380 381 6.852664 TGAGGTTTTCTTGTTTTCTCTTCAC 58.147 36.000 0.00 0.00 0.00 3.18
381 382 7.645058 ATGAGGTTTTCTTGTTTTCTCTTCA 57.355 32.000 0.00 0.00 0.00 3.02
386 387 9.599866 CCTTTTTATGAGGTTTTCTTGTTTTCT 57.400 29.630 0.00 0.00 0.00 2.52
387 388 8.826710 CCCTTTTTATGAGGTTTTCTTGTTTTC 58.173 33.333 0.00 0.00 32.15 2.29
388 389 8.544622 TCCCTTTTTATGAGGTTTTCTTGTTTT 58.455 29.630 0.00 0.00 32.15 2.43
389 390 8.084985 TCCCTTTTTATGAGGTTTTCTTGTTT 57.915 30.769 0.00 0.00 32.15 2.83
390 391 7.669089 TCCCTTTTTATGAGGTTTTCTTGTT 57.331 32.000 0.00 0.00 32.15 2.83
391 392 7.563556 TCTTCCCTTTTTATGAGGTTTTCTTGT 59.436 33.333 0.00 0.00 32.15 3.16
392 393 7.951591 TCTTCCCTTTTTATGAGGTTTTCTTG 58.048 34.615 0.00 0.00 32.15 3.02
393 394 8.547481 TTCTTCCCTTTTTATGAGGTTTTCTT 57.453 30.769 0.00 0.00 32.15 2.52
394 395 8.547481 TTTCTTCCCTTTTTATGAGGTTTTCT 57.453 30.769 0.00 0.00 32.15 2.52
397 398 9.374711 TGTATTTCTTCCCTTTTTATGAGGTTT 57.625 29.630 0.00 0.00 32.15 3.27
398 399 8.950007 TGTATTTCTTCCCTTTTTATGAGGTT 57.050 30.769 0.00 0.00 32.15 3.50
399 400 8.950007 TTGTATTTCTTCCCTTTTTATGAGGT 57.050 30.769 0.00 0.00 32.15 3.85
400 401 9.243105 TCTTGTATTTCTTCCCTTTTTATGAGG 57.757 33.333 0.00 0.00 0.00 3.86
408 409 9.764363 GTGATTTTTCTTGTATTTCTTCCCTTT 57.236 29.630 0.00 0.00 0.00 3.11
409 410 9.147732 AGTGATTTTTCTTGTATTTCTTCCCTT 57.852 29.630 0.00 0.00 0.00 3.95
410 411 8.712228 AGTGATTTTTCTTGTATTTCTTCCCT 57.288 30.769 0.00 0.00 0.00 4.20
421 422 8.989653 TTTCGGTTTTAAGTGATTTTTCTTGT 57.010 26.923 0.00 0.00 0.00 3.16
428 429 8.536407 CGTTCATTTTTCGGTTTTAAGTGATTT 58.464 29.630 0.00 0.00 0.00 2.17
429 430 7.916450 TCGTTCATTTTTCGGTTTTAAGTGATT 59.084 29.630 0.00 0.00 0.00 2.57
430 431 7.419204 TCGTTCATTTTTCGGTTTTAAGTGAT 58.581 30.769 0.00 0.00 0.00 3.06
431 432 6.783162 TCGTTCATTTTTCGGTTTTAAGTGA 58.217 32.000 0.00 0.00 0.00 3.41
432 433 7.429920 TCTTCGTTCATTTTTCGGTTTTAAGTG 59.570 33.333 0.00 0.00 0.00 3.16
433 434 7.474190 TCTTCGTTCATTTTTCGGTTTTAAGT 58.526 30.769 0.00 0.00 0.00 2.24
434 435 7.901874 TCTTCGTTCATTTTTCGGTTTTAAG 57.098 32.000 0.00 0.00 0.00 1.85
435 436 8.684973 TTTCTTCGTTCATTTTTCGGTTTTAA 57.315 26.923 0.00 0.00 0.00 1.52
436 437 8.585436 GTTTTCTTCGTTCATTTTTCGGTTTTA 58.415 29.630 0.00 0.00 0.00 1.52
437 438 7.412129 GGTTTTCTTCGTTCATTTTTCGGTTTT 60.412 33.333 0.00 0.00 0.00 2.43
438 439 6.035220 GGTTTTCTTCGTTCATTTTTCGGTTT 59.965 34.615 0.00 0.00 0.00 3.27
439 440 5.517411 GGTTTTCTTCGTTCATTTTTCGGTT 59.483 36.000 0.00 0.00 0.00 4.44
440 441 5.038683 GGTTTTCTTCGTTCATTTTTCGGT 58.961 37.500 0.00 0.00 0.00 4.69
441 442 4.145756 CGGTTTTCTTCGTTCATTTTTCGG 59.854 41.667 0.00 0.00 0.00 4.30
442 443 4.965158 TCGGTTTTCTTCGTTCATTTTTCG 59.035 37.500 0.00 0.00 0.00 3.46
443 444 6.635239 TCATCGGTTTTCTTCGTTCATTTTTC 59.365 34.615 0.00 0.00 0.00 2.29
444 445 6.500041 TCATCGGTTTTCTTCGTTCATTTTT 58.500 32.000 0.00 0.00 0.00 1.94
445 446 6.067263 TCATCGGTTTTCTTCGTTCATTTT 57.933 33.333 0.00 0.00 0.00 1.82
446 447 5.682943 TCATCGGTTTTCTTCGTTCATTT 57.317 34.783 0.00 0.00 0.00 2.32
447 448 5.682943 TTCATCGGTTTTCTTCGTTCATT 57.317 34.783 0.00 0.00 0.00 2.57
448 449 5.682943 TTTCATCGGTTTTCTTCGTTCAT 57.317 34.783 0.00 0.00 0.00 2.57
449 450 5.487153 TTTTCATCGGTTTTCTTCGTTCA 57.513 34.783 0.00 0.00 0.00 3.18
450 451 5.740099 TGTTTTTCATCGGTTTTCTTCGTTC 59.260 36.000 0.00 0.00 0.00 3.95
451 452 5.642686 TGTTTTTCATCGGTTTTCTTCGTT 58.357 33.333 0.00 0.00 0.00 3.85
452 453 5.238006 TGTTTTTCATCGGTTTTCTTCGT 57.762 34.783 0.00 0.00 0.00 3.85
453 454 6.470877 TCTTTGTTTTTCATCGGTTTTCTTCG 59.529 34.615 0.00 0.00 0.00 3.79
454 455 7.749539 TCTTTGTTTTTCATCGGTTTTCTTC 57.250 32.000 0.00 0.00 0.00 2.87
455 456 8.541133 TTTCTTTGTTTTTCATCGGTTTTCTT 57.459 26.923 0.00 0.00 0.00 2.52
456 457 8.032451 TCTTTCTTTGTTTTTCATCGGTTTTCT 58.968 29.630 0.00 0.00 0.00 2.52
457 458 8.108172 GTCTTTCTTTGTTTTTCATCGGTTTTC 58.892 33.333 0.00 0.00 0.00 2.29
458 459 7.600752 TGTCTTTCTTTGTTTTTCATCGGTTTT 59.399 29.630 0.00 0.00 0.00 2.43
459 460 7.093992 TGTCTTTCTTTGTTTTTCATCGGTTT 58.906 30.769 0.00 0.00 0.00 3.27
460 461 6.626302 TGTCTTTCTTTGTTTTTCATCGGTT 58.374 32.000 0.00 0.00 0.00 4.44
461 462 6.094881 TCTGTCTTTCTTTGTTTTTCATCGGT 59.905 34.615 0.00 0.00 0.00 4.69
462 463 6.494842 TCTGTCTTTCTTTGTTTTTCATCGG 58.505 36.000 0.00 0.00 0.00 4.18
463 464 7.969387 TTCTGTCTTTCTTTGTTTTTCATCG 57.031 32.000 0.00 0.00 0.00 3.84
464 465 9.958285 GTTTTCTGTCTTTCTTTGTTTTTCATC 57.042 29.630 0.00 0.00 0.00 2.92
465 466 8.935844 GGTTTTCTGTCTTTCTTTGTTTTTCAT 58.064 29.630 0.00 0.00 0.00 2.57
466 467 7.928706 TGGTTTTCTGTCTTTCTTTGTTTTTCA 59.071 29.630 0.00 0.00 0.00 2.69
467 468 8.305441 TGGTTTTCTGTCTTTCTTTGTTTTTC 57.695 30.769 0.00 0.00 0.00 2.29
468 469 8.669946 TTGGTTTTCTGTCTTTCTTTGTTTTT 57.330 26.923 0.00 0.00 0.00 1.94
469 470 8.669946 TTTGGTTTTCTGTCTTTCTTTGTTTT 57.330 26.923 0.00 0.00 0.00 2.43
470 471 8.147704 TCTTTGGTTTTCTGTCTTTCTTTGTTT 58.852 29.630 0.00 0.00 0.00 2.83
471 472 7.666623 TCTTTGGTTTTCTGTCTTTCTTTGTT 58.333 30.769 0.00 0.00 0.00 2.83
472 473 7.227049 TCTTTGGTTTTCTGTCTTTCTTTGT 57.773 32.000 0.00 0.00 0.00 2.83
473 474 8.532977 TTTCTTTGGTTTTCTGTCTTTCTTTG 57.467 30.769 0.00 0.00 0.00 2.77
474 475 9.208022 CTTTTCTTTGGTTTTCTGTCTTTCTTT 57.792 29.630 0.00 0.00 0.00 2.52
475 476 7.331934 GCTTTTCTTTGGTTTTCTGTCTTTCTT 59.668 33.333 0.00 0.00 0.00 2.52
476 477 6.813649 GCTTTTCTTTGGTTTTCTGTCTTTCT 59.186 34.615 0.00 0.00 0.00 2.52
477 478 6.589907 TGCTTTTCTTTGGTTTTCTGTCTTTC 59.410 34.615 0.00 0.00 0.00 2.62
478 479 6.463360 TGCTTTTCTTTGGTTTTCTGTCTTT 58.537 32.000 0.00 0.00 0.00 2.52
479 480 6.036577 TGCTTTTCTTTGGTTTTCTGTCTT 57.963 33.333 0.00 0.00 0.00 3.01
480 481 5.185828 ACTGCTTTTCTTTGGTTTTCTGTCT 59.814 36.000 0.00 0.00 0.00 3.41
481 482 5.289434 CACTGCTTTTCTTTGGTTTTCTGTC 59.711 40.000 0.00 0.00 0.00 3.51
482 483 5.047377 TCACTGCTTTTCTTTGGTTTTCTGT 60.047 36.000 0.00 0.00 0.00 3.41
483 484 5.289434 GTCACTGCTTTTCTTTGGTTTTCTG 59.711 40.000 0.00 0.00 0.00 3.02
484 485 5.410924 GTCACTGCTTTTCTTTGGTTTTCT 58.589 37.500 0.00 0.00 0.00 2.52
485 486 4.265320 CGTCACTGCTTTTCTTTGGTTTTC 59.735 41.667 0.00 0.00 0.00 2.29
486 487 4.082463 TCGTCACTGCTTTTCTTTGGTTTT 60.082 37.500 0.00 0.00 0.00 2.43
487 488 3.442273 TCGTCACTGCTTTTCTTTGGTTT 59.558 39.130 0.00 0.00 0.00 3.27
488 489 3.013921 TCGTCACTGCTTTTCTTTGGTT 58.986 40.909 0.00 0.00 0.00 3.67
489 490 2.639065 TCGTCACTGCTTTTCTTTGGT 58.361 42.857 0.00 0.00 0.00 3.67
490 491 3.691049 TTCGTCACTGCTTTTCTTTGG 57.309 42.857 0.00 0.00 0.00 3.28
491 492 4.411327 TGTTTCGTCACTGCTTTTCTTTG 58.589 39.130 0.00 0.00 0.00 2.77
492 493 4.695217 TGTTTCGTCACTGCTTTTCTTT 57.305 36.364 0.00 0.00 0.00 2.52
493 494 4.695217 TTGTTTCGTCACTGCTTTTCTT 57.305 36.364 0.00 0.00 0.00 2.52
494 495 4.394920 TCTTTGTTTCGTCACTGCTTTTCT 59.605 37.500 0.00 0.00 0.00 2.52
495 496 4.658071 TCTTTGTTTCGTCACTGCTTTTC 58.342 39.130 0.00 0.00 0.00 2.29
496 497 4.394920 TCTCTTTGTTTCGTCACTGCTTTT 59.605 37.500 0.00 0.00 0.00 2.27
497 498 3.938963 TCTCTTTGTTTCGTCACTGCTTT 59.061 39.130 0.00 0.00 0.00 3.51
498 499 3.531538 TCTCTTTGTTTCGTCACTGCTT 58.468 40.909 0.00 0.00 0.00 3.91
499 500 3.179443 TCTCTTTGTTTCGTCACTGCT 57.821 42.857 0.00 0.00 0.00 4.24
500 501 3.309954 AGTTCTCTTTGTTTCGTCACTGC 59.690 43.478 0.00 0.00 0.00 4.40
501 502 4.566759 TCAGTTCTCTTTGTTTCGTCACTG 59.433 41.667 0.00 0.00 0.00 3.66
502 503 4.755411 TCAGTTCTCTTTGTTTCGTCACT 58.245 39.130 0.00 0.00 0.00 3.41
503 504 5.291128 TCTTCAGTTCTCTTTGTTTCGTCAC 59.709 40.000 0.00 0.00 0.00 3.67
504 505 5.416083 TCTTCAGTTCTCTTTGTTTCGTCA 58.584 37.500 0.00 0.00 0.00 4.35
505 506 5.968387 TCTTCAGTTCTCTTTGTTTCGTC 57.032 39.130 0.00 0.00 0.00 4.20
539 541 5.174037 TCGGGTCTTTCTTCATTATTGGT 57.826 39.130 0.00 0.00 0.00 3.67
540 542 5.880332 TCTTCGGGTCTTTCTTCATTATTGG 59.120 40.000 0.00 0.00 0.00 3.16
541 543 6.985188 TCTTCGGGTCTTTCTTCATTATTG 57.015 37.500 0.00 0.00 0.00 1.90
543 545 7.094334 GGTTTTCTTCGGGTCTTTCTTCATTAT 60.094 37.037 0.00 0.00 0.00 1.28
544 546 6.206048 GGTTTTCTTCGGGTCTTTCTTCATTA 59.794 38.462 0.00 0.00 0.00 1.90
573 577 1.295220 CATTCGTTCGCTCGTTCGC 60.295 57.895 0.00 0.00 0.00 4.70
574 578 0.706184 TTCATTCGTTCGCTCGTTCG 59.294 50.000 0.00 0.00 0.00 3.95
575 579 1.719780 AGTTCATTCGTTCGCTCGTTC 59.280 47.619 0.00 0.00 0.00 3.95
576 580 1.455786 CAGTTCATTCGTTCGCTCGTT 59.544 47.619 0.00 0.00 0.00 3.85
577 581 1.060713 CAGTTCATTCGTTCGCTCGT 58.939 50.000 0.00 0.00 0.00 4.18
578 582 1.057847 GTCAGTTCATTCGTTCGCTCG 59.942 52.381 0.00 0.00 0.00 5.03
579 583 2.058798 TGTCAGTTCATTCGTTCGCTC 58.941 47.619 0.00 0.00 0.00 5.03
580 584 2.148916 TGTCAGTTCATTCGTTCGCT 57.851 45.000 0.00 0.00 0.00 4.93
581 585 2.941891 TTGTCAGTTCATTCGTTCGC 57.058 45.000 0.00 0.00 0.00 4.70
582 586 6.015504 CCTATTTTGTCAGTTCATTCGTTCG 58.984 40.000 0.00 0.00 0.00 3.95
583 587 6.899114 ACCTATTTTGTCAGTTCATTCGTTC 58.101 36.000 0.00 0.00 0.00 3.95
584 588 6.347402 CGACCTATTTTGTCAGTTCATTCGTT 60.347 38.462 0.00 0.00 32.91 3.85
585 589 5.120208 CGACCTATTTTGTCAGTTCATTCGT 59.880 40.000 0.00 0.00 32.91 3.85
586 590 5.550981 CGACCTATTTTGTCAGTTCATTCG 58.449 41.667 0.00 0.00 32.91 3.34
587 591 5.324697 GCGACCTATTTTGTCAGTTCATTC 58.675 41.667 0.00 0.00 32.91 2.67
588 592 4.156008 GGCGACCTATTTTGTCAGTTCATT 59.844 41.667 0.00 0.00 32.91 2.57
607 619 0.179094 CGCTACAGTATTTGGGGCGA 60.179 55.000 4.10 0.00 46.79 5.54
621 633 0.174617 AGCTTTCTCCTCTGCGCTAC 59.825 55.000 9.73 0.00 0.00 3.58
629 641 0.320771 TCGCCACAAGCTTTCTCCTC 60.321 55.000 0.00 0.00 40.39 3.71
640 652 1.202817 TGTAAGATACGCTCGCCACAA 59.797 47.619 0.00 0.00 0.00 3.33
642 654 1.852895 CTTGTAAGATACGCTCGCCAC 59.147 52.381 0.00 0.00 0.00 5.01
668 680 2.095161 ACCGCAGCTATATCTCGCTTAC 60.095 50.000 0.00 0.00 33.45 2.34
706 719 1.002274 GGCAGGAAGAGAGGAGGGA 59.998 63.158 0.00 0.00 0.00 4.20
748 761 2.027625 GCTGACCCAACCGAACGAG 61.028 63.158 0.00 0.00 0.00 4.18
944 3180 1.082496 GCTTGAGCGTTCTGTGTGC 60.082 57.895 0.00 0.00 0.00 4.57
990 3245 3.126879 ACCGCCATCGTCGTCGTA 61.127 61.111 1.33 0.00 38.33 3.43
991 3246 4.771356 CACCGCCATCGTCGTCGT 62.771 66.667 1.33 0.00 38.33 4.34
1221 3651 4.778415 CAGTCGCGGGACACGGAG 62.778 72.222 31.03 13.41 45.92 4.63
1313 3743 7.774625 TCAATCAGCATGGAGTGTTTATAATGA 59.225 33.333 0.00 0.00 34.67 2.57
1315 3745 8.701908 ATCAATCAGCATGGAGTGTTTATAAT 57.298 30.769 0.00 0.00 34.67 1.28
1316 3746 8.523915 AATCAATCAGCATGGAGTGTTTATAA 57.476 30.769 0.00 0.00 34.67 0.98
1317 3747 7.774625 TGAATCAATCAGCATGGAGTGTTTATA 59.225 33.333 0.00 0.00 34.67 0.98
1318 3748 6.604396 TGAATCAATCAGCATGGAGTGTTTAT 59.396 34.615 0.00 0.00 34.67 1.40
1319 3749 5.945191 TGAATCAATCAGCATGGAGTGTTTA 59.055 36.000 0.00 0.00 34.67 2.01
1320 3750 4.768448 TGAATCAATCAGCATGGAGTGTTT 59.232 37.500 0.00 0.00 34.67 2.83
1330 3760 2.159296 GCAGCACATGAATCAATCAGCA 60.159 45.455 0.00 0.00 42.53 4.41
1336 3766 3.055312 AGAGAGAGCAGCACATGAATCAA 60.055 43.478 0.00 0.00 0.00 2.57
1338 3768 3.182341 AGAGAGAGCAGCACATGAATC 57.818 47.619 0.00 0.00 0.00 2.52
1341 3771 2.696506 CAAAGAGAGAGCAGCACATGA 58.303 47.619 0.00 0.00 0.00 3.07
1346 3776 0.321387 CAGGCAAAGAGAGAGCAGCA 60.321 55.000 0.00 0.00 0.00 4.41
1353 3783 7.975616 GCTAGATAGATATTCAGGCAAAGAGAG 59.024 40.741 0.00 0.00 0.00 3.20
1357 3791 7.609960 TCAGCTAGATAGATATTCAGGCAAAG 58.390 38.462 0.00 0.00 0.00 2.77
1368 3804 5.004448 CCCGTCAGTTCAGCTAGATAGATA 58.996 45.833 0.00 0.00 0.00 1.98
1369 3805 3.823873 CCCGTCAGTTCAGCTAGATAGAT 59.176 47.826 0.00 0.00 0.00 1.98
1370 3806 3.215151 CCCGTCAGTTCAGCTAGATAGA 58.785 50.000 0.00 0.00 0.00 1.98
1371 3807 2.287909 GCCCGTCAGTTCAGCTAGATAG 60.288 54.545 0.00 0.00 0.00 2.08
1391 3827 0.826256 AAAGGGAAACAACCGGGAGC 60.826 55.000 6.32 0.00 0.00 4.70
1418 3859 3.260483 CGATCACTCTGCAGCGGC 61.260 66.667 9.47 0.31 41.68 6.53
1419 3860 3.260483 GCGATCACTCTGCAGCGG 61.260 66.667 9.47 6.91 0.00 5.52
1420 3861 2.202716 AGCGATCACTCTGCAGCG 60.203 61.111 9.47 5.22 0.00 5.18
1466 3907 2.701073 TCGTCGTCTTCTTCAGTTCC 57.299 50.000 0.00 0.00 0.00 3.62
1483 3924 4.790651 CGACCATCGATCTCTTATTCATCG 59.209 45.833 0.00 0.00 43.74 3.84
1495 3936 0.876342 GGTTGCTCCGACCATCGATC 60.876 60.000 0.00 0.00 43.74 3.69
1496 3937 1.144057 GGTTGCTCCGACCATCGAT 59.856 57.895 0.00 0.00 43.74 3.59
1551 3993 1.544982 GGGGATCGATCTAGACGGACA 60.545 57.143 23.96 0.00 0.00 4.02
1554 3996 1.169577 CAGGGGATCGATCTAGACGG 58.830 60.000 23.96 9.47 0.00 4.79
1628 4074 7.201427 CGGTGCAAATTGGTTTCATTACTATTG 60.201 37.037 0.00 0.00 0.00 1.90
1629 4075 6.811170 CGGTGCAAATTGGTTTCATTACTATT 59.189 34.615 0.00 0.00 0.00 1.73
1630 4076 6.151985 TCGGTGCAAATTGGTTTCATTACTAT 59.848 34.615 0.00 0.00 0.00 2.12
1631 4077 5.473846 TCGGTGCAAATTGGTTTCATTACTA 59.526 36.000 0.00 0.00 0.00 1.82
1632 4078 4.279671 TCGGTGCAAATTGGTTTCATTACT 59.720 37.500 0.00 0.00 0.00 2.24
1633 4079 4.551388 TCGGTGCAAATTGGTTTCATTAC 58.449 39.130 0.00 0.00 0.00 1.89
1639 4085 1.760029 ACCTTCGGTGCAAATTGGTTT 59.240 42.857 0.00 0.00 32.98 3.27
1704 4151 6.516718 TGTTCGTTTCAGAGAGAGAAAGATT 58.483 36.000 0.00 0.00 35.81 2.40
1712 4159 7.220875 CGATAATCATTGTTCGTTTCAGAGAGA 59.779 37.037 0.00 0.00 0.00 3.10
1773 4224 2.015736 ACAGTGATCAGCAACGGATC 57.984 50.000 0.00 1.40 41.20 3.36
1799 4250 6.525629 CATCACTTTAGTCTTATGTAGGGGG 58.474 44.000 0.00 0.00 0.00 5.40
1800 4251 5.992217 GCATCACTTTAGTCTTATGTAGGGG 59.008 44.000 0.00 0.00 0.00 4.79
1840 4291 6.575162 AGAGTTCAAACTGTGTTCTTTTGT 57.425 33.333 0.00 0.00 39.88 2.83
1961 4413 4.675063 TTAGGGGAAAAAGATTGAGCCT 57.325 40.909 0.00 0.00 0.00 4.58
1966 4418 9.413734 AGATTACTGATTAGGGGAAAAAGATTG 57.586 33.333 0.00 0.00 0.00 2.67
2108 4560 2.363038 CCATCCGGTCTCGTATTTACCA 59.637 50.000 0.00 0.00 32.55 3.25
2110 4562 2.223876 TGCCATCCGGTCTCGTATTTAC 60.224 50.000 0.00 0.00 33.95 2.01
2117 4569 0.249073 CTTACTGCCATCCGGTCTCG 60.249 60.000 0.00 0.00 34.16 4.04
2177 4662 9.562408 TGAAGTGTGAAAATATTACAACCACTA 57.438 29.630 13.70 3.95 30.98 2.74
2179 4664 9.180678 CTTGAAGTGTGAAAATATTACAACCAC 57.819 33.333 0.00 0.00 0.00 4.16
2180 4665 8.908903 ACTTGAAGTGTGAAAATATTACAACCA 58.091 29.630 0.00 0.00 0.00 3.67
2181 4666 9.744468 AACTTGAAGTGTGAAAATATTACAACC 57.256 29.630 0.00 0.00 0.00 3.77
2194 4679 7.120579 ACTGTTCAAATGTAACTTGAAGTGTGA 59.879 33.333 0.00 0.00 35.64 3.58
2229 4741 7.195646 TCAGCTTTTCATACACACAAAGAAAG 58.804 34.615 0.00 0.00 30.83 2.62
2230 4742 7.094508 TCAGCTTTTCATACACACAAAGAAA 57.905 32.000 0.00 0.00 0.00 2.52
2231 4743 6.691754 TCAGCTTTTCATACACACAAAGAA 57.308 33.333 0.00 0.00 0.00 2.52
2232 4744 6.486320 TCATCAGCTTTTCATACACACAAAGA 59.514 34.615 0.00 0.00 0.00 2.52
2270 4782 0.523519 GGGAGTAGCTTGCAAGTTGC 59.476 55.000 26.55 23.60 45.29 4.17
2271 4783 2.079925 GAGGGAGTAGCTTGCAAGTTG 58.920 52.381 26.55 3.95 0.00 3.16
2272 4784 1.981495 AGAGGGAGTAGCTTGCAAGTT 59.019 47.619 26.55 23.34 0.00 2.66
2274 4786 1.277557 ACAGAGGGAGTAGCTTGCAAG 59.722 52.381 22.44 22.44 0.00 4.01
2275 4787 1.276421 GACAGAGGGAGTAGCTTGCAA 59.724 52.381 0.00 0.00 0.00 4.08
2277 4789 1.136110 GAGACAGAGGGAGTAGCTTGC 59.864 57.143 0.00 0.00 0.00 4.01
2278 4790 2.451490 TGAGACAGAGGGAGTAGCTTG 58.549 52.381 0.00 0.00 0.00 4.01
2279 4791 2.909504 TGAGACAGAGGGAGTAGCTT 57.090 50.000 0.00 0.00 0.00 3.74
2280 4792 2.909504 TTGAGACAGAGGGAGTAGCT 57.090 50.000 0.00 0.00 0.00 3.32
2281 4793 3.963428 TTTTGAGACAGAGGGAGTAGC 57.037 47.619 0.00 0.00 0.00 3.58
2282 4794 5.413309 ACATTTTGAGACAGAGGGAGTAG 57.587 43.478 0.00 0.00 0.00 2.57
2283 4795 6.070767 CCTTACATTTTGAGACAGAGGGAGTA 60.071 42.308 0.00 0.00 0.00 2.59
2284 4796 5.280215 CCTTACATTTTGAGACAGAGGGAGT 60.280 44.000 0.00 0.00 0.00 3.85
2285 4797 5.181748 CCTTACATTTTGAGACAGAGGGAG 58.818 45.833 0.00 0.00 0.00 4.30
2286 4798 4.565652 GCCTTACATTTTGAGACAGAGGGA 60.566 45.833 0.00 0.00 0.00 4.20
2287 4799 3.691609 GCCTTACATTTTGAGACAGAGGG 59.308 47.826 0.00 0.00 0.00 4.30
2288 4800 3.372206 CGCCTTACATTTTGAGACAGAGG 59.628 47.826 0.00 0.00 0.00 3.69
2289 4801 3.997021 ACGCCTTACATTTTGAGACAGAG 59.003 43.478 0.00 0.00 0.00 3.35
2290 4802 4.002906 ACGCCTTACATTTTGAGACAGA 57.997 40.909 0.00 0.00 0.00 3.41
2291 4803 4.749245 AACGCCTTACATTTTGAGACAG 57.251 40.909 0.00 0.00 0.00 3.51
2292 4804 5.508200 AAAACGCCTTACATTTTGAGACA 57.492 34.783 0.00 0.00 0.00 3.41
2293 4805 7.917720 TTTAAAACGCCTTACATTTTGAGAC 57.082 32.000 0.00 0.00 0.00 3.36
2294 4806 8.138712 ACATTTAAAACGCCTTACATTTTGAGA 58.861 29.630 0.00 0.00 0.00 3.27
2295 4807 8.293114 ACATTTAAAACGCCTTACATTTTGAG 57.707 30.769 0.00 0.00 0.00 3.02
2296 4808 9.745880 TTACATTTAAAACGCCTTACATTTTGA 57.254 25.926 0.00 0.00 0.00 2.69
2298 4810 9.968870 TCTTACATTTAAAACGCCTTACATTTT 57.031 25.926 0.00 0.00 0.00 1.82
2299 4811 9.401873 GTCTTACATTTAAAACGCCTTACATTT 57.598 29.630 0.00 0.00 0.00 2.32
2300 4812 7.747357 CGTCTTACATTTAAAACGCCTTACATT 59.253 33.333 0.00 0.00 0.00 2.71
2301 4813 7.095102 ACGTCTTACATTTAAAACGCCTTACAT 60.095 33.333 7.56 0.00 33.68 2.29
2302 4814 6.202570 ACGTCTTACATTTAAAACGCCTTACA 59.797 34.615 7.56 0.00 33.68 2.41
2303 4815 6.593072 ACGTCTTACATTTAAAACGCCTTAC 58.407 36.000 7.56 0.00 33.68 2.34
2304 4816 6.783892 ACGTCTTACATTTAAAACGCCTTA 57.216 33.333 7.56 0.00 33.68 2.69
2305 4817 5.678132 ACGTCTTACATTTAAAACGCCTT 57.322 34.783 7.56 0.00 33.68 4.35
2306 4818 5.678132 AACGTCTTACATTTAAAACGCCT 57.322 34.783 7.56 0.00 33.68 5.52
2307 4819 5.908499 TGAAACGTCTTACATTTAAAACGCC 59.092 36.000 7.56 0.36 33.68 5.68
2308 4820 6.956393 TGAAACGTCTTACATTTAAAACGC 57.044 33.333 7.56 0.00 33.68 4.84
2315 4827 8.973835 TGAAGTTTTTGAAACGTCTTACATTT 57.026 26.923 16.35 0.00 31.46 2.32
2316 4828 9.019764 CATGAAGTTTTTGAAACGTCTTACATT 57.980 29.630 16.35 0.00 31.46 2.71
2317 4829 7.167468 GCATGAAGTTTTTGAAACGTCTTACAT 59.833 33.333 16.35 4.31 31.46 2.29
2318 4830 6.470877 GCATGAAGTTTTTGAAACGTCTTACA 59.529 34.615 16.35 2.58 31.46 2.41
2319 4831 6.470877 TGCATGAAGTTTTTGAAACGTCTTAC 59.529 34.615 16.35 8.74 31.46 2.34
2320 4832 6.556212 TGCATGAAGTTTTTGAAACGTCTTA 58.444 32.000 16.35 2.90 31.46 2.10
2321 4833 5.406649 TGCATGAAGTTTTTGAAACGTCTT 58.593 33.333 16.35 10.03 31.46 3.01
2322 4834 4.992688 TGCATGAAGTTTTTGAAACGTCT 58.007 34.783 16.35 4.39 31.46 4.18
2323 4835 5.888412 ATGCATGAAGTTTTTGAAACGTC 57.112 34.783 0.00 10.99 0.00 4.34
2324 4836 6.660887 AAATGCATGAAGTTTTTGAAACGT 57.339 29.167 0.00 0.00 0.00 3.99
2325 4837 7.178741 TCAAAATGCATGAAGTTTTTGAAACG 58.821 30.769 17.09 0.00 42.13 3.60
2326 4838 8.389603 TCTCAAAATGCATGAAGTTTTTGAAAC 58.610 29.630 18.93 0.00 43.53 2.78
2327 4839 8.389603 GTCTCAAAATGCATGAAGTTTTTGAAA 58.610 29.630 18.93 8.38 43.53 2.69
2328 4840 7.548427 TGTCTCAAAATGCATGAAGTTTTTGAA 59.452 29.630 18.93 10.88 43.53 2.69
2329 4841 7.040494 TGTCTCAAAATGCATGAAGTTTTTGA 58.960 30.769 17.92 17.92 42.58 2.69
2330 4842 7.223193 TCTGTCTCAAAATGCATGAAGTTTTTG 59.777 33.333 12.59 12.59 39.33 2.44
2331 4843 7.267128 TCTGTCTCAAAATGCATGAAGTTTTT 58.733 30.769 0.00 0.00 0.00 1.94
2332 4844 6.808829 TCTGTCTCAAAATGCATGAAGTTTT 58.191 32.000 0.00 0.00 0.00 2.43
2333 4845 6.395426 TCTGTCTCAAAATGCATGAAGTTT 57.605 33.333 0.00 0.00 0.00 2.66
2334 4846 5.048224 CCTCTGTCTCAAAATGCATGAAGTT 60.048 40.000 0.00 0.00 0.00 2.66
2335 4847 4.458295 CCTCTGTCTCAAAATGCATGAAGT 59.542 41.667 0.00 0.00 0.00 3.01
2336 4848 4.142447 CCCTCTGTCTCAAAATGCATGAAG 60.142 45.833 0.00 0.00 0.00 3.02
2337 4849 3.760151 CCCTCTGTCTCAAAATGCATGAA 59.240 43.478 0.00 0.00 0.00 2.57
2338 4850 3.009363 TCCCTCTGTCTCAAAATGCATGA 59.991 43.478 0.00 0.00 0.00 3.07
2339 4851 3.349927 TCCCTCTGTCTCAAAATGCATG 58.650 45.455 0.00 0.00 0.00 4.06
2340 4852 3.009916 ACTCCCTCTGTCTCAAAATGCAT 59.990 43.478 0.00 0.00 0.00 3.96
2341 4853 2.373169 ACTCCCTCTGTCTCAAAATGCA 59.627 45.455 0.00 0.00 0.00 3.96
2342 4854 3.064900 ACTCCCTCTGTCTCAAAATGC 57.935 47.619 0.00 0.00 0.00 3.56
2403 4915 7.223260 TCTCCGTCTTTTTACTCTTGATACA 57.777 36.000 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.