Multiple sequence alignment - TraesCS5A01G313000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G313000 chr5A 100.000 2900 0 0 1 2900 524216501 524219400 0.000000e+00 5356.0
1 TraesCS5A01G313000 chr5B 92.600 1973 88 31 396 2335 496484513 496486460 0.000000e+00 2782.0
2 TraesCS5A01G313000 chr5B 95.322 171 7 1 230 400 496483994 496484163 1.320000e-68 270.0
3 TraesCS5A01G313000 chr5D 94.260 1812 81 12 532 2336 412351635 412353430 0.000000e+00 2748.0
4 TraesCS5A01G313000 chr5D 87.712 236 19 1 137 362 412335102 412335337 1.710000e-67 267.0
5 TraesCS5A01G313000 chr5D 91.339 127 8 3 2767 2891 412353550 412353675 1.380000e-38 171.0
6 TraesCS5A01G313000 chr5D 84.091 176 14 6 372 534 412335615 412335789 1.080000e-34 158.0
7 TraesCS5A01G313000 chr5D 89.381 113 12 0 2450 2562 412353462 412353574 3.010000e-30 143.0
8 TraesCS5A01G313000 chr7A 91.880 899 64 4 1000 1892 731962430 731963325 0.000000e+00 1247.0
9 TraesCS5A01G313000 chr7A 79.394 165 24 4 2451 2615 50272975 50272821 1.100000e-19 108.0
10 TraesCS5A01G313000 chr7D 86.475 1146 106 29 791 1896 634412369 634411233 0.000000e+00 1212.0
11 TraesCS5A01G313000 chr7D 79.487 273 45 7 2451 2715 44670289 44670020 1.770000e-42 183.0
12 TraesCS5A01G313000 chr7B 90.222 900 80 7 1000 1895 741719260 741718365 0.000000e+00 1168.0
13 TraesCS5A01G313000 chr7B 86.331 139 17 2 1 139 572960455 572960319 1.800000e-32 150.0
14 TraesCS5A01G313000 chr7B 76.078 255 42 16 2451 2699 321105407 321105648 6.570000e-22 115.0
15 TraesCS5A01G313000 chr4D 80.586 273 45 5 2451 2716 37612076 37612347 1.360000e-48 204.0
16 TraesCS5A01G313000 chr4D 76.735 245 50 4 2476 2713 341214579 341214823 2.350000e-26 130.0
17 TraesCS5A01G313000 chr4B 80.000 270 47 5 2451 2713 95881272 95881003 2.950000e-45 193.0
18 TraesCS5A01G313000 chr4B 92.453 53 4 0 22 74 660537068 660537016 3.100000e-10 76.8
19 TraesCS5A01G313000 chr6D 79.757 247 40 8 2475 2713 94283113 94283357 1.380000e-38 171.0
20 TraesCS5A01G313000 chrUn 88.571 140 14 2 1 139 337136674 337136812 4.970000e-38 169.0
21 TraesCS5A01G313000 chrUn 88.571 140 14 2 1 139 347591877 347592015 4.970000e-38 169.0
22 TraesCS5A01G313000 chrUn 81.905 105 17 2 2455 2558 25017027 25016924 1.430000e-13 87.9
23 TraesCS5A01G313000 chrUn 89.655 58 6 0 2455 2512 309626747 309626690 1.110000e-09 75.0
24 TraesCS5A01G313000 chr1B 77.953 254 49 5 2451 2699 278458233 278458484 5.010000e-33 152.0
25 TraesCS5A01G313000 chr4A 81.548 168 24 4 2451 2615 476176485 476176322 6.520000e-27 132.0
26 TraesCS5A01G313000 chr3D 76.735 245 50 5 2476 2713 417605001 417605245 2.350000e-26 130.0
27 TraesCS5A01G313000 chr3D 76.518 247 47 7 2476 2713 298241319 298241075 1.090000e-24 124.0
28 TraesCS5A01G313000 chr2B 76.800 250 45 9 2476 2715 240839921 240839675 8.430000e-26 128.0
29 TraesCS5A01G313000 chr2B 74.436 266 40 19 2454 2716 786143470 786143230 3.980000e-14 89.8
30 TraesCS5A01G313000 chr3A 87.059 85 9 1 2633 2715 729602684 729602600 8.560000e-16 95.3
31 TraesCS5A01G313000 chr3A 82.716 81 13 1 2451 2530 537747020 537747100 1.440000e-08 71.3
32 TraesCS5A01G313000 chr2A 78.431 102 20 2 1321 1421 737341462 737341362 6.710000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G313000 chr5A 524216501 524219400 2899 False 5356.000000 5356 100.0000 1 2900 1 chr5A.!!$F1 2899
1 TraesCS5A01G313000 chr5B 496483994 496486460 2466 False 1526.000000 2782 93.9610 230 2335 2 chr5B.!!$F1 2105
2 TraesCS5A01G313000 chr5D 412351635 412353675 2040 False 1020.666667 2748 91.6600 532 2891 3 chr5D.!!$F2 2359
3 TraesCS5A01G313000 chr5D 412335102 412335789 687 False 212.500000 267 85.9015 137 534 2 chr5D.!!$F1 397
4 TraesCS5A01G313000 chr7A 731962430 731963325 895 False 1247.000000 1247 91.8800 1000 1892 1 chr7A.!!$F1 892
5 TraesCS5A01G313000 chr7D 634411233 634412369 1136 True 1212.000000 1212 86.4750 791 1896 1 chr7D.!!$R2 1105
6 TraesCS5A01G313000 chr7B 741718365 741719260 895 True 1168.000000 1168 90.2220 1000 1895 1 chr7B.!!$R2 895

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
955 1610 0.037232 CTCTCACGACCCAAGAACCC 60.037 60.0 0.0 0.0 0.0 4.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2755 3480 0.251474 ACACTCACCAGCCATGCAAT 60.251 50.0 0.0 0.0 0.0 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.772825 TGCATTTTATATCACAAGGAGGC 57.227 39.130 0.00 0.00 0.00 4.70
25 26 4.584325 TGCATTTTATATCACAAGGAGGCC 59.416 41.667 0.00 0.00 0.00 5.19
26 27 4.320494 GCATTTTATATCACAAGGAGGCCG 60.320 45.833 0.00 0.00 0.00 6.13
27 28 2.543777 TTATATCACAAGGAGGCCGC 57.456 50.000 0.00 0.00 0.00 6.53
28 29 0.317160 TATATCACAAGGAGGCCGCG 59.683 55.000 0.00 0.00 0.00 6.46
29 30 2.383245 ATATCACAAGGAGGCCGCGG 62.383 60.000 24.05 24.05 0.00 6.46
36 37 4.796495 GGAGGCCGCGGTCCAATT 62.796 66.667 31.19 14.67 32.55 2.32
37 38 2.750237 GAGGCCGCGGTCCAATTT 60.750 61.111 31.19 14.29 0.00 1.82
38 39 2.282887 AGGCCGCGGTCCAATTTT 60.283 55.556 31.19 10.99 0.00 1.82
39 40 2.180769 GGCCGCGGTCCAATTTTC 59.819 61.111 28.70 5.99 0.00 2.29
40 41 2.340328 GGCCGCGGTCCAATTTTCT 61.340 57.895 28.70 0.00 0.00 2.52
41 42 1.584495 GCCGCGGTCCAATTTTCTT 59.416 52.632 28.70 0.00 0.00 2.52
42 43 0.038618 GCCGCGGTCCAATTTTCTTT 60.039 50.000 28.70 0.00 0.00 2.52
43 44 1.696988 CCGCGGTCCAATTTTCTTTG 58.303 50.000 19.50 0.00 0.00 2.77
44 45 1.059942 CGCGGTCCAATTTTCTTTGC 58.940 50.000 0.00 0.00 0.00 3.68
45 46 1.601663 CGCGGTCCAATTTTCTTTGCA 60.602 47.619 0.00 0.00 0.00 4.08
46 47 2.687370 GCGGTCCAATTTTCTTTGCAT 58.313 42.857 0.00 0.00 0.00 3.96
47 48 3.671971 CGCGGTCCAATTTTCTTTGCATA 60.672 43.478 0.00 0.00 0.00 3.14
48 49 4.432712 GCGGTCCAATTTTCTTTGCATAT 58.567 39.130 0.00 0.00 0.00 1.78
49 50 4.268405 GCGGTCCAATTTTCTTTGCATATG 59.732 41.667 0.00 0.00 0.00 1.78
50 51 4.805192 CGGTCCAATTTTCTTTGCATATGG 59.195 41.667 4.56 0.00 0.00 2.74
51 52 5.394005 CGGTCCAATTTTCTTTGCATATGGA 60.394 40.000 4.56 0.00 33.54 3.41
52 53 6.892310 GTCCAATTTTCTTTGCATATGGAC 57.108 37.500 4.56 8.85 45.97 4.02
53 54 6.855763 TCCAATTTTCTTTGCATATGGACT 57.144 33.333 4.56 0.00 31.12 3.85
54 55 6.632909 TCCAATTTTCTTTGCATATGGACTG 58.367 36.000 4.56 0.00 31.12 3.51
55 56 6.211184 TCCAATTTTCTTTGCATATGGACTGT 59.789 34.615 4.56 0.00 31.12 3.55
56 57 6.532657 CCAATTTTCTTTGCATATGGACTGTC 59.467 38.462 4.56 0.00 0.00 3.51
57 58 7.318141 CAATTTTCTTTGCATATGGACTGTCT 58.682 34.615 7.85 0.00 0.00 3.41
58 59 5.885230 TTTCTTTGCATATGGACTGTCTG 57.115 39.130 7.85 0.00 0.00 3.51
59 60 4.558226 TCTTTGCATATGGACTGTCTGT 57.442 40.909 7.85 0.00 0.00 3.41
60 61 4.910195 TCTTTGCATATGGACTGTCTGTT 58.090 39.130 7.85 0.00 0.00 3.16
61 62 4.696877 TCTTTGCATATGGACTGTCTGTTG 59.303 41.667 7.85 2.58 0.00 3.33
62 63 3.979101 TGCATATGGACTGTCTGTTGA 57.021 42.857 7.85 0.00 0.00 3.18
63 64 4.284829 TGCATATGGACTGTCTGTTGAA 57.715 40.909 7.85 0.00 0.00 2.69
64 65 4.256110 TGCATATGGACTGTCTGTTGAAG 58.744 43.478 7.85 0.00 0.00 3.02
65 66 3.064545 GCATATGGACTGTCTGTTGAAGC 59.935 47.826 7.85 0.83 0.00 3.86
66 67 2.936919 ATGGACTGTCTGTTGAAGCA 57.063 45.000 7.85 0.00 0.00 3.91
67 68 2.245159 TGGACTGTCTGTTGAAGCAG 57.755 50.000 7.85 0.00 36.61 4.24
68 69 0.871057 GGACTGTCTGTTGAAGCAGC 59.129 55.000 7.85 0.00 34.98 5.25
69 70 0.510359 GACTGTCTGTTGAAGCAGCG 59.490 55.000 0.00 0.00 34.98 5.18
70 71 0.179073 ACTGTCTGTTGAAGCAGCGT 60.179 50.000 0.00 0.00 34.98 5.07
71 72 0.940126 CTGTCTGTTGAAGCAGCGTT 59.060 50.000 0.00 0.00 36.49 4.84
72 73 1.331756 CTGTCTGTTGAAGCAGCGTTT 59.668 47.619 0.00 0.00 36.49 3.60
73 74 1.742831 TGTCTGTTGAAGCAGCGTTTT 59.257 42.857 0.00 0.00 36.49 2.43
74 75 2.163412 TGTCTGTTGAAGCAGCGTTTTT 59.837 40.909 0.00 0.00 36.49 1.94
92 93 4.813750 TTTTTACCCCAAAAACGTCCAA 57.186 36.364 0.00 0.00 40.39 3.53
93 94 4.813750 TTTTACCCCAAAAACGTCCAAA 57.186 36.364 0.00 0.00 33.14 3.28
94 95 4.813750 TTTACCCCAAAAACGTCCAAAA 57.186 36.364 0.00 0.00 0.00 2.44
95 96 2.971660 ACCCCAAAAACGTCCAAAAG 57.028 45.000 0.00 0.00 0.00 2.27
96 97 2.181125 ACCCCAAAAACGTCCAAAAGT 58.819 42.857 0.00 0.00 0.00 2.66
97 98 2.568062 ACCCCAAAAACGTCCAAAAGTT 59.432 40.909 0.00 0.00 0.00 2.66
98 99 3.768215 ACCCCAAAAACGTCCAAAAGTTA 59.232 39.130 0.00 0.00 0.00 2.24
99 100 4.222366 ACCCCAAAAACGTCCAAAAGTTAA 59.778 37.500 0.00 0.00 0.00 2.01
100 101 5.104859 ACCCCAAAAACGTCCAAAAGTTAAT 60.105 36.000 0.00 0.00 0.00 1.40
101 102 5.818336 CCCCAAAAACGTCCAAAAGTTAATT 59.182 36.000 0.00 0.00 0.00 1.40
102 103 6.985059 CCCCAAAAACGTCCAAAAGTTAATTA 59.015 34.615 0.00 0.00 0.00 1.40
103 104 7.658167 CCCCAAAAACGTCCAAAAGTTAATTAT 59.342 33.333 0.00 0.00 0.00 1.28
104 105 9.047371 CCCAAAAACGTCCAAAAGTTAATTATT 57.953 29.630 0.00 0.00 0.00 1.40
195 196 2.426381 TGTGACAGCTTGCAAAATGACA 59.574 40.909 15.44 12.72 0.00 3.58
203 204 3.675228 GCTTGCAAAATGACATCCTCCTG 60.675 47.826 0.00 0.00 0.00 3.86
208 209 0.842635 AATGACATCCTCCTGGCCTC 59.157 55.000 3.32 0.00 0.00 4.70
269 280 0.611200 TCTACCATCACCGTGTTGGG 59.389 55.000 25.67 15.58 40.62 4.12
324 335 3.642377 GGAAGTCACTAGGGACCCTTATC 59.358 52.174 20.96 11.72 38.59 1.75
338 349 1.489230 CCTTATCGGCCCAGGTAAACT 59.511 52.381 0.00 0.00 0.00 2.66
451 1085 2.172505 TCTTTCCTGCAGACAACCAAGA 59.827 45.455 17.39 9.76 0.00 3.02
452 1086 2.957402 TTCCTGCAGACAACCAAGAT 57.043 45.000 17.39 0.00 0.00 2.40
453 1087 2.189594 TCCTGCAGACAACCAAGATG 57.810 50.000 17.39 0.00 0.00 2.90
454 1088 1.699083 TCCTGCAGACAACCAAGATGA 59.301 47.619 17.39 0.00 0.00 2.92
455 1089 2.106338 TCCTGCAGACAACCAAGATGAA 59.894 45.455 17.39 0.00 0.00 2.57
456 1090 2.886523 CCTGCAGACAACCAAGATGAAA 59.113 45.455 17.39 0.00 0.00 2.69
457 1091 3.304928 CCTGCAGACAACCAAGATGAAAC 60.305 47.826 17.39 0.00 0.00 2.78
490 1136 2.168521 TGTCTTTCTATGGGCCTTCTCG 59.831 50.000 4.53 0.00 0.00 4.04
496 1142 2.703536 TCTATGGGCCTTCTCGCAAATA 59.296 45.455 4.53 0.00 32.60 1.40
498 1144 0.326595 TGGGCCTTCTCGCAAATACA 59.673 50.000 4.53 0.00 0.00 2.29
501 1147 2.288666 GGCCTTCTCGCAAATACATCA 58.711 47.619 0.00 0.00 0.00 3.07
518 1164 4.323417 ACATCAAGACAACGATAAGCCAA 58.677 39.130 0.00 0.00 0.00 4.52
538 1184 7.678947 GCCAATGCTTGTGATAGTAATATCT 57.321 36.000 11.21 0.00 33.53 1.98
599 1246 0.104304 GATAAGACCGTGGCCGACAT 59.896 55.000 0.00 0.00 35.63 3.06
610 1257 1.070445 GCCGACATCCATCCCTCAG 59.930 63.158 0.00 0.00 0.00 3.35
626 1273 2.351111 CCTCAGGACGTCTACTTCGTAC 59.649 54.545 16.46 0.00 41.64 3.67
669 1316 8.004801 AGTACCATATATTTCAAGGGGGAAAAG 58.995 37.037 0.00 0.00 39.94 2.27
670 1317 5.602561 ACCATATATTTCAAGGGGGAAAAGC 59.397 40.000 0.00 0.00 39.94 3.51
719 1366 0.800683 TCCTTAGCATGAACGCGTCG 60.801 55.000 14.44 2.47 36.85 5.12
759 1406 3.039134 CCCCACAACGCAAAGGAC 58.961 61.111 0.00 0.00 0.00 3.85
805 1452 1.202891 AGCCAACCCTACACCAAACTC 60.203 52.381 0.00 0.00 0.00 3.01
861 1508 0.533755 CACAATCTCATCCGCCCTCC 60.534 60.000 0.00 0.00 0.00 4.30
862 1509 1.072159 CAATCTCATCCGCCCTCCC 59.928 63.158 0.00 0.00 0.00 4.30
863 1510 2.150051 AATCTCATCCGCCCTCCCC 61.150 63.158 0.00 0.00 0.00 4.81
898 1548 1.258445 ACCAATCTTCCGTCGCCTCT 61.258 55.000 0.00 0.00 0.00 3.69
899 1549 0.528684 CCAATCTTCCGTCGCCTCTC 60.529 60.000 0.00 0.00 0.00 3.20
900 1550 0.528684 CAATCTTCCGTCGCCTCTCC 60.529 60.000 0.00 0.00 0.00 3.71
901 1551 0.684805 AATCTTCCGTCGCCTCTCCT 60.685 55.000 0.00 0.00 0.00 3.69
902 1552 1.104577 ATCTTCCGTCGCCTCTCCTC 61.105 60.000 0.00 0.00 0.00 3.71
903 1553 1.751162 CTTCCGTCGCCTCTCCTCT 60.751 63.158 0.00 0.00 0.00 3.69
911 1561 1.106944 CGCCTCTCCTCTCCTTCCTC 61.107 65.000 0.00 0.00 0.00 3.71
920 1570 1.137872 CTCTCCTTCCTCCAACCATCG 59.862 57.143 0.00 0.00 0.00 3.84
923 1573 0.107654 CCTTCCTCCAACCATCGTCC 60.108 60.000 0.00 0.00 0.00 4.79
955 1610 0.037232 CTCTCACGACCCAAGAACCC 60.037 60.000 0.00 0.00 0.00 4.11
994 1649 0.521659 CGAGAAGAACCGACGAGCTC 60.522 60.000 2.73 2.73 0.00 4.09
1156 1838 1.631536 ATTCTCCTCCTCCTCCTCCT 58.368 55.000 0.00 0.00 0.00 3.69
1157 1839 0.930726 TTCTCCTCCTCCTCCTCCTC 59.069 60.000 0.00 0.00 0.00 3.71
1158 1840 0.996762 TCTCCTCCTCCTCCTCCTCC 60.997 65.000 0.00 0.00 0.00 4.30
1908 2617 5.541845 TGCCCTCAGAACTGATTATTATCG 58.458 41.667 4.96 0.00 39.13 2.92
1910 2619 4.932200 CCCTCAGAACTGATTATTATCGGC 59.068 45.833 4.96 0.00 40.25 5.54
1916 2625 9.390582 TCAGAACTGATTATTATCGGCTACCCG 62.391 44.444 0.37 0.00 44.58 5.28
1929 2640 2.172082 GGCTACCCGTTTTATCCTCCTT 59.828 50.000 0.00 0.00 0.00 3.36
1963 2674 2.027745 ACTGCACACCTACCTTGATCAG 60.028 50.000 0.00 0.00 0.00 2.90
2015 2726 2.653726 GTCATGCCATACACCATTGGA 58.346 47.619 10.37 0.00 34.81 3.53
2016 2727 2.620115 GTCATGCCATACACCATTGGAG 59.380 50.000 10.37 3.76 34.81 3.86
2017 2728 1.958579 CATGCCATACACCATTGGAGG 59.041 52.381 10.37 3.62 34.81 4.30
2018 2729 0.998928 TGCCATACACCATTGGAGGT 59.001 50.000 10.37 9.63 44.48 3.85
2063 2778 0.987848 GAGCGTTCGCGATCGAGTAG 60.988 60.000 35.87 13.03 46.06 2.57
2074 2789 2.353889 CGATCGAGTAGTCCGGAGAAAA 59.646 50.000 10.26 0.00 0.00 2.29
2078 2793 3.760151 TCGAGTAGTCCGGAGAAAATCAA 59.240 43.478 3.06 0.00 0.00 2.57
2084 2799 4.848357 AGTCCGGAGAAAATCAATGTGAT 58.152 39.130 3.06 0.00 39.09 3.06
2137 2852 2.633488 GTGGTTCTAGCTCCATGGTTC 58.367 52.381 12.58 4.73 36.09 3.62
2149 2864 3.189606 TCCATGGTTCCTGGTAGTTGAT 58.810 45.455 12.58 0.00 35.19 2.57
2160 2875 4.382470 CCTGGTAGTTGATCAAGAGTGGAG 60.382 50.000 8.80 1.25 0.00 3.86
2162 2877 3.055819 GGTAGTTGATCAAGAGTGGAGCA 60.056 47.826 8.80 0.00 0.00 4.26
2220 2942 7.978975 TGCAATGTTTCTATTAGTATTTTGGCC 59.021 33.333 0.00 0.00 0.00 5.36
2232 2954 6.796785 AGTATTTTGGCCAGATATTTTGCT 57.203 33.333 5.11 0.00 0.00 3.91
2236 2958 6.557291 TTTTGGCCAGATATTTTGCTTTTG 57.443 33.333 5.11 0.00 0.00 2.44
2255 2977 7.121907 TGCTTTTGTATTGTGTGGCTCATAATA 59.878 33.333 12.73 12.73 38.48 0.98
2257 2979 9.853555 CTTTTGTATTGTGTGGCTCATAATAAA 57.146 29.630 16.76 11.15 40.15 1.40
2265 2987 6.479990 TGTGTGGCTCATAATAAAAGAGATCG 59.520 38.462 0.00 0.00 0.00 3.69
2275 2997 2.215907 AAAGAGATCGAGATGCACGG 57.784 50.000 0.00 0.00 0.00 4.94
2276 2998 1.107114 AAGAGATCGAGATGCACGGT 58.893 50.000 0.00 0.00 0.00 4.83
2291 3013 0.321671 ACGGTGAGTGAGGACAATGG 59.678 55.000 0.00 0.00 0.00 3.16
2293 3015 0.984230 GGTGAGTGAGGACAATGGGA 59.016 55.000 0.00 0.00 0.00 4.37
2294 3016 1.561542 GGTGAGTGAGGACAATGGGAT 59.438 52.381 0.00 0.00 0.00 3.85
2295 3017 2.025887 GGTGAGTGAGGACAATGGGATT 60.026 50.000 0.00 0.00 0.00 3.01
2412 3137 7.912250 CACTAGCTACTTGCATATTTTTGGAAG 59.088 37.037 4.45 4.45 46.78 3.46
2419 3144 2.169144 GCATATTTTTGGAAGGCAGGCT 59.831 45.455 0.00 0.00 0.00 4.58
2431 3156 0.546598 GGCAGGCTATAGTGGTGGTT 59.453 55.000 0.84 0.00 0.00 3.67
2432 3157 1.064685 GGCAGGCTATAGTGGTGGTTT 60.065 52.381 0.84 0.00 0.00 3.27
2433 3158 2.620627 GGCAGGCTATAGTGGTGGTTTT 60.621 50.000 0.84 0.00 0.00 2.43
2434 3159 3.089284 GCAGGCTATAGTGGTGGTTTTT 58.911 45.455 0.84 0.00 0.00 1.94
2462 3187 4.748892 CCGGTATCAAGGCTATAGTGATG 58.251 47.826 12.39 5.03 34.01 3.07
2463 3188 4.382040 CCGGTATCAAGGCTATAGTGATGG 60.382 50.000 12.39 4.36 34.01 3.51
2464 3189 4.220821 CGGTATCAAGGCTATAGTGATGGT 59.779 45.833 12.39 4.02 34.01 3.55
2465 3190 5.417894 CGGTATCAAGGCTATAGTGATGGTA 59.582 44.000 12.39 3.24 34.01 3.25
2466 3191 6.096987 CGGTATCAAGGCTATAGTGATGGTAT 59.903 42.308 12.39 0.17 34.01 2.73
2513 3238 6.354938 AGACTAGCAAACATGATGATGTGAT 58.645 36.000 0.00 0.00 42.30 3.06
2515 3240 7.656542 AGACTAGCAAACATGATGATGTGATAG 59.343 37.037 0.00 8.64 42.30 2.08
2517 3242 8.155510 ACTAGCAAACATGATGATGTGATAGAT 58.844 33.333 18.95 0.60 42.30 1.98
2532 3257 9.692749 GATGTGATAGATAATTACGGAAGAACA 57.307 33.333 0.00 0.00 0.00 3.18
2548 3273 6.365518 CGGAAGAACAAGAAGGTTAGAGTAAC 59.634 42.308 0.00 0.00 37.94 2.50
2549 3274 6.365518 GGAAGAACAAGAAGGTTAGAGTAACG 59.634 42.308 0.00 0.00 39.54 3.18
2553 3278 7.446625 AGAACAAGAAGGTTAGAGTAACGTAGA 59.553 37.037 0.00 0.00 39.54 2.59
2557 3282 9.107177 CAAGAAGGTTAGAGTAACGTAGATAGA 57.893 37.037 0.00 0.00 39.54 1.98
2558 3283 9.850198 AAGAAGGTTAGAGTAACGTAGATAGAT 57.150 33.333 0.00 0.00 39.54 1.98
2562 3287 9.709495 AGGTTAGAGTAACGTAGATAGATACTG 57.291 37.037 0.00 0.00 39.54 2.74
2563 3288 8.442384 GGTTAGAGTAACGTAGATAGATACTGC 58.558 40.741 0.00 0.00 39.54 4.40
2564 3289 8.986847 GTTAGAGTAACGTAGATAGATACTGCA 58.013 37.037 0.00 0.00 0.00 4.41
2565 3290 9.722184 TTAGAGTAACGTAGATAGATACTGCAT 57.278 33.333 0.00 0.00 0.00 3.96
2566 3291 8.259049 AGAGTAACGTAGATAGATACTGCATC 57.741 38.462 0.00 0.00 0.00 3.91
2567 3292 7.878644 AGAGTAACGTAGATAGATACTGCATCA 59.121 37.037 0.00 0.00 35.96 3.07
2568 3293 7.808672 AGTAACGTAGATAGATACTGCATCAC 58.191 38.462 0.00 0.00 35.96 3.06
2569 3294 6.635030 AACGTAGATAGATACTGCATCACA 57.365 37.500 0.00 0.00 35.96 3.58
2570 3295 6.635030 ACGTAGATAGATACTGCATCACAA 57.365 37.500 0.00 0.00 35.96 3.33
2571 3296 7.220741 ACGTAGATAGATACTGCATCACAAT 57.779 36.000 0.00 0.00 35.96 2.71
2572 3297 8.336801 ACGTAGATAGATACTGCATCACAATA 57.663 34.615 0.00 0.00 35.96 1.90
2573 3298 8.793592 ACGTAGATAGATACTGCATCACAATAA 58.206 33.333 0.00 0.00 35.96 1.40
2574 3299 9.626045 CGTAGATAGATACTGCATCACAATAAA 57.374 33.333 0.00 0.00 35.96 1.40
2582 3307 9.552114 GATACTGCATCACAATAAATGATAAGC 57.448 33.333 0.00 0.00 34.99 3.09
2583 3308 7.578310 ACTGCATCACAATAAATGATAAGCT 57.422 32.000 0.00 0.00 34.99 3.74
2584 3309 8.681486 ACTGCATCACAATAAATGATAAGCTA 57.319 30.769 0.00 0.00 34.99 3.32
2585 3310 9.293404 ACTGCATCACAATAAATGATAAGCTAT 57.707 29.630 0.00 0.00 34.99 2.97
2618 3343 8.786898 TCATGCAAGACAATAAATAAGATAGGC 58.213 33.333 0.00 0.00 0.00 3.93
2619 3344 8.790718 CATGCAAGACAATAAATAAGATAGGCT 58.209 33.333 0.00 0.00 0.00 4.58
2620 3345 8.383318 TGCAAGACAATAAATAAGATAGGCTC 57.617 34.615 0.00 0.00 0.00 4.70
2621 3346 7.992608 TGCAAGACAATAAATAAGATAGGCTCA 59.007 33.333 0.00 0.00 0.00 4.26
2622 3347 9.007901 GCAAGACAATAAATAAGATAGGCTCAT 57.992 33.333 0.00 0.00 0.00 2.90
2632 3357 9.594936 AAATAAGATAGGCTCATCTACACTACT 57.405 33.333 0.00 0.00 34.08 2.57
2634 3359 7.989416 AAGATAGGCTCATCTACACTACTAC 57.011 40.000 0.00 0.00 34.08 2.73
2635 3360 7.324388 AGATAGGCTCATCTACACTACTACT 57.676 40.000 0.00 0.00 33.41 2.57
2636 3361 8.438618 AGATAGGCTCATCTACACTACTACTA 57.561 38.462 0.00 0.00 33.41 1.82
2637 3362 9.053472 AGATAGGCTCATCTACACTACTACTAT 57.947 37.037 0.00 0.00 33.41 2.12
2640 3365 7.975608 AGGCTCATCTACACTACTACTATACA 58.024 38.462 0.00 0.00 0.00 2.29
2641 3366 7.879160 AGGCTCATCTACACTACTACTATACAC 59.121 40.741 0.00 0.00 0.00 2.90
2642 3367 7.660617 GGCTCATCTACACTACTACTATACACA 59.339 40.741 0.00 0.00 0.00 3.72
2643 3368 9.053840 GCTCATCTACACTACTACTATACACAA 57.946 37.037 0.00 0.00 0.00 3.33
2652 3377 9.684448 CACTACTACTATACACAATGAAGATGG 57.316 37.037 0.00 0.00 0.00 3.51
2653 3378 9.422681 ACTACTACTATACACAATGAAGATGGT 57.577 33.333 0.00 0.00 0.00 3.55
2662 3387 7.792374 ACACAATGAAGATGGTATCATACAC 57.208 36.000 0.00 0.00 35.29 2.90
2663 3388 7.568349 ACACAATGAAGATGGTATCATACACT 58.432 34.615 0.00 0.00 35.29 3.55
2664 3389 8.704668 ACACAATGAAGATGGTATCATACACTA 58.295 33.333 0.00 0.00 35.29 2.74
2665 3390 9.201127 CACAATGAAGATGGTATCATACACTAG 57.799 37.037 0.00 0.00 35.29 2.57
2666 3391 8.928448 ACAATGAAGATGGTATCATACACTAGT 58.072 33.333 0.00 0.00 35.29 2.57
2714 3439 8.901472 ATGATACTCCACTATGATTAGCCTAA 57.099 34.615 0.00 0.00 0.00 2.69
2715 3440 8.721133 TGATACTCCACTATGATTAGCCTAAA 57.279 34.615 0.00 0.00 0.00 1.85
2716 3441 8.807118 TGATACTCCACTATGATTAGCCTAAAG 58.193 37.037 0.00 0.00 0.00 1.85
2717 3442 8.958060 ATACTCCACTATGATTAGCCTAAAGA 57.042 34.615 0.00 0.00 0.00 2.52
2718 3443 7.056844 ACTCCACTATGATTAGCCTAAAGAC 57.943 40.000 0.00 0.00 0.00 3.01
2719 3444 6.085555 TCCACTATGATTAGCCTAAAGACG 57.914 41.667 0.00 0.00 0.00 4.18
2720 3445 5.831525 TCCACTATGATTAGCCTAAAGACGA 59.168 40.000 0.00 0.00 0.00 4.20
2721 3446 6.493802 TCCACTATGATTAGCCTAAAGACGAT 59.506 38.462 0.00 0.00 0.00 3.73
2722 3447 7.668469 TCCACTATGATTAGCCTAAAGACGATA 59.332 37.037 0.00 0.00 0.00 2.92
2723 3448 7.755822 CCACTATGATTAGCCTAAAGACGATAC 59.244 40.741 0.00 0.00 0.00 2.24
2724 3449 8.297426 CACTATGATTAGCCTAAAGACGATACA 58.703 37.037 0.00 0.00 0.00 2.29
2725 3450 8.857098 ACTATGATTAGCCTAAAGACGATACAA 58.143 33.333 0.00 0.00 0.00 2.41
2726 3451 9.347934 CTATGATTAGCCTAAAGACGATACAAG 57.652 37.037 0.00 0.00 0.00 3.16
2727 3452 7.108841 TGATTAGCCTAAAGACGATACAAGT 57.891 36.000 0.00 0.00 0.00 3.16
2728 3453 7.553334 TGATTAGCCTAAAGACGATACAAGTT 58.447 34.615 0.00 0.00 0.00 2.66
2729 3454 8.689061 TGATTAGCCTAAAGACGATACAAGTTA 58.311 33.333 0.00 0.00 0.00 2.24
2730 3455 8.868635 ATTAGCCTAAAGACGATACAAGTTAC 57.131 34.615 0.00 0.00 0.00 2.50
2731 3456 6.527057 AGCCTAAAGACGATACAAGTTACT 57.473 37.500 0.00 0.00 0.00 2.24
2732 3457 6.331061 AGCCTAAAGACGATACAAGTTACTG 58.669 40.000 0.00 0.00 0.00 2.74
2733 3458 6.152323 AGCCTAAAGACGATACAAGTTACTGA 59.848 38.462 0.00 0.00 0.00 3.41
2734 3459 6.979238 GCCTAAAGACGATACAAGTTACTGAT 59.021 38.462 0.00 0.00 0.00 2.90
2735 3460 8.133627 GCCTAAAGACGATACAAGTTACTGATA 58.866 37.037 0.00 0.00 0.00 2.15
2736 3461 9.666626 CCTAAAGACGATACAAGTTACTGATAG 57.333 37.037 0.00 0.00 0.00 2.08
2737 3462 9.666626 CTAAAGACGATACAAGTTACTGATAGG 57.333 37.037 0.00 0.00 0.00 2.57
2738 3463 7.642082 AAGACGATACAAGTTACTGATAGGT 57.358 36.000 0.00 0.00 0.00 3.08
2739 3464 7.642082 AGACGATACAAGTTACTGATAGGTT 57.358 36.000 0.00 0.00 0.00 3.50
2740 3465 7.481642 AGACGATACAAGTTACTGATAGGTTG 58.518 38.462 0.00 0.00 0.00 3.77
2741 3466 6.570692 ACGATACAAGTTACTGATAGGTTGG 58.429 40.000 0.00 0.00 0.00 3.77
2742 3467 6.379133 ACGATACAAGTTACTGATAGGTTGGA 59.621 38.462 0.00 0.00 0.00 3.53
2743 3468 7.093640 ACGATACAAGTTACTGATAGGTTGGAA 60.094 37.037 0.00 0.00 0.00 3.53
2744 3469 7.762615 CGATACAAGTTACTGATAGGTTGGAAA 59.237 37.037 0.00 0.00 0.00 3.13
2745 3470 9.099454 GATACAAGTTACTGATAGGTTGGAAAG 57.901 37.037 0.00 0.00 0.00 2.62
2746 3471 6.838382 ACAAGTTACTGATAGGTTGGAAAGT 58.162 36.000 0.00 0.00 0.00 2.66
2747 3472 6.710744 ACAAGTTACTGATAGGTTGGAAAGTG 59.289 38.462 0.00 0.00 0.00 3.16
2748 3473 5.246307 AGTTACTGATAGGTTGGAAAGTGC 58.754 41.667 0.00 0.00 0.00 4.40
2749 3474 3.788227 ACTGATAGGTTGGAAAGTGCA 57.212 42.857 0.00 0.00 0.00 4.57
2750 3475 3.679389 ACTGATAGGTTGGAAAGTGCAG 58.321 45.455 0.00 0.00 0.00 4.41
2751 3476 3.012518 CTGATAGGTTGGAAAGTGCAGG 58.987 50.000 0.00 0.00 0.00 4.85
2752 3477 2.375174 TGATAGGTTGGAAAGTGCAGGT 59.625 45.455 0.00 0.00 0.00 4.00
2753 3478 3.181434 TGATAGGTTGGAAAGTGCAGGTT 60.181 43.478 0.00 0.00 0.00 3.50
2754 3479 4.042311 TGATAGGTTGGAAAGTGCAGGTTA 59.958 41.667 0.00 0.00 0.00 2.85
2755 3480 3.306472 AGGTTGGAAAGTGCAGGTTAA 57.694 42.857 0.00 0.00 0.00 2.01
2756 3481 3.844640 AGGTTGGAAAGTGCAGGTTAAT 58.155 40.909 0.00 0.00 0.00 1.40
2757 3482 4.223144 AGGTTGGAAAGTGCAGGTTAATT 58.777 39.130 0.00 0.00 0.00 1.40
2758 3483 4.039124 AGGTTGGAAAGTGCAGGTTAATTG 59.961 41.667 0.00 0.00 0.00 2.32
2759 3484 3.658757 TGGAAAGTGCAGGTTAATTGC 57.341 42.857 7.70 7.70 41.86 3.56
2765 3490 1.559368 TGCAGGTTAATTGCATGGCT 58.441 45.000 12.05 0.00 45.89 4.75
2766 3491 1.205179 TGCAGGTTAATTGCATGGCTG 59.795 47.619 12.05 0.00 45.89 4.85
2767 3492 1.472026 GCAGGTTAATTGCATGGCTGG 60.472 52.381 9.31 0.00 41.17 4.85
2768 3493 1.826720 CAGGTTAATTGCATGGCTGGT 59.173 47.619 0.00 0.00 0.00 4.00
2769 3494 1.826720 AGGTTAATTGCATGGCTGGTG 59.173 47.619 0.00 0.00 0.00 4.17
2770 3495 1.824230 GGTTAATTGCATGGCTGGTGA 59.176 47.619 0.00 0.00 0.00 4.02
2771 3496 2.159198 GGTTAATTGCATGGCTGGTGAG 60.159 50.000 0.00 0.00 0.00 3.51
2772 3497 2.493278 GTTAATTGCATGGCTGGTGAGT 59.507 45.455 0.00 0.00 0.00 3.41
2773 3498 0.892755 AATTGCATGGCTGGTGAGTG 59.107 50.000 0.00 0.00 0.00 3.51
2774 3499 0.251474 ATTGCATGGCTGGTGAGTGT 60.251 50.000 0.00 0.00 0.00 3.55
2775 3500 0.399833 TTGCATGGCTGGTGAGTGTA 59.600 50.000 0.00 0.00 0.00 2.90
2776 3501 0.399833 TGCATGGCTGGTGAGTGTAA 59.600 50.000 0.00 0.00 0.00 2.41
2777 3502 1.004628 TGCATGGCTGGTGAGTGTAAT 59.995 47.619 0.00 0.00 0.00 1.89
2778 3503 2.094675 GCATGGCTGGTGAGTGTAATT 58.905 47.619 0.00 0.00 0.00 1.40
2779 3504 2.493278 GCATGGCTGGTGAGTGTAATTT 59.507 45.455 0.00 0.00 0.00 1.82
2780 3505 3.674138 GCATGGCTGGTGAGTGTAATTTG 60.674 47.826 0.00 0.00 0.00 2.32
2781 3506 2.513753 TGGCTGGTGAGTGTAATTTGG 58.486 47.619 0.00 0.00 0.00 3.28
2782 3507 2.158534 TGGCTGGTGAGTGTAATTTGGT 60.159 45.455 0.00 0.00 0.00 3.67
2783 3508 2.890945 GGCTGGTGAGTGTAATTTGGTT 59.109 45.455 0.00 0.00 0.00 3.67
2784 3509 4.076394 GGCTGGTGAGTGTAATTTGGTTA 58.924 43.478 0.00 0.00 0.00 2.85
2843 3568 2.675844 CGTCCATCGGCTTCAACATTAA 59.324 45.455 0.00 0.00 35.71 1.40
2845 3570 4.552767 CGTCCATCGGCTTCAACATTAATC 60.553 45.833 0.00 0.00 35.71 1.75
2846 3571 4.335315 GTCCATCGGCTTCAACATTAATCA 59.665 41.667 0.00 0.00 0.00 2.57
2847 3572 4.576053 TCCATCGGCTTCAACATTAATCAG 59.424 41.667 0.00 0.00 0.00 2.90
2850 3575 3.938963 TCGGCTTCAACATTAATCAGTCC 59.061 43.478 0.00 0.00 0.00 3.85
2866 3591 3.646162 TCAGTCCAGTACTTGTCCATGTT 59.354 43.478 0.00 0.00 35.76 2.71
2893 3618 8.396272 CTTTCTTTGATTGAAAGGAAGTAGGA 57.604 34.615 8.12 0.00 46.41 2.94
2894 3619 7.986085 TTCTTTGATTGAAAGGAAGTAGGAG 57.014 36.000 0.00 0.00 41.43 3.69
2895 3620 7.079451 TCTTTGATTGAAAGGAAGTAGGAGT 57.921 36.000 0.00 0.00 41.43 3.85
2896 3621 8.202461 TCTTTGATTGAAAGGAAGTAGGAGTA 57.798 34.615 0.00 0.00 41.43 2.59
2897 3622 8.095169 TCTTTGATTGAAAGGAAGTAGGAGTAC 58.905 37.037 0.00 0.00 41.43 2.73
2898 3623 7.554959 TTGATTGAAAGGAAGTAGGAGTACT 57.445 36.000 0.00 0.00 41.61 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.979517 GCCTCCTTGTGATATAAAATGCAAC 59.020 40.000 0.00 0.00 0.00 4.17
1 2 5.068987 GGCCTCCTTGTGATATAAAATGCAA 59.931 40.000 0.00 0.00 0.00 4.08
2 3 4.584325 GGCCTCCTTGTGATATAAAATGCA 59.416 41.667 0.00 0.00 0.00 3.96
3 4 4.320494 CGGCCTCCTTGTGATATAAAATGC 60.320 45.833 0.00 0.00 0.00 3.56
5 6 3.821033 GCGGCCTCCTTGTGATATAAAAT 59.179 43.478 0.00 0.00 0.00 1.82
6 7 3.211045 GCGGCCTCCTTGTGATATAAAA 58.789 45.455 0.00 0.00 0.00 1.52
7 8 2.805295 CGCGGCCTCCTTGTGATATAAA 60.805 50.000 0.00 0.00 0.00 1.40
8 9 1.270094 CGCGGCCTCCTTGTGATATAA 60.270 52.381 0.00 0.00 0.00 0.98
9 10 0.317160 CGCGGCCTCCTTGTGATATA 59.683 55.000 0.00 0.00 0.00 0.86
10 11 1.069765 CGCGGCCTCCTTGTGATAT 59.930 57.895 0.00 0.00 0.00 1.63
11 12 2.499205 CGCGGCCTCCTTGTGATA 59.501 61.111 0.00 0.00 0.00 2.15
12 13 4.473520 CCGCGGCCTCCTTGTGAT 62.474 66.667 14.67 0.00 0.00 3.06
19 20 4.796495 AATTGGACCGCGGCCTCC 62.796 66.667 30.01 27.37 0.00 4.30
20 21 2.266376 GAAAATTGGACCGCGGCCTC 62.266 60.000 30.01 20.61 0.00 4.70
21 22 2.282887 AAAATTGGACCGCGGCCT 60.283 55.556 30.01 13.68 0.00 5.19
22 23 1.873270 AAGAAAATTGGACCGCGGCC 61.873 55.000 28.58 26.88 0.00 6.13
23 24 0.038618 AAAGAAAATTGGACCGCGGC 60.039 50.000 28.58 18.35 0.00 6.53
24 25 1.696988 CAAAGAAAATTGGACCGCGG 58.303 50.000 26.86 26.86 0.00 6.46
25 26 1.059942 GCAAAGAAAATTGGACCGCG 58.940 50.000 0.00 0.00 0.00 6.46
26 27 2.147436 TGCAAAGAAAATTGGACCGC 57.853 45.000 0.00 0.00 0.00 5.68
27 28 4.805192 CCATATGCAAAGAAAATTGGACCG 59.195 41.667 0.00 0.00 33.29 4.79
28 29 5.812127 GTCCATATGCAAAGAAAATTGGACC 59.188 40.000 7.38 0.00 43.81 4.46
29 30 6.892310 GTCCATATGCAAAGAAAATTGGAC 57.108 37.500 0.00 3.29 43.43 4.02
30 31 6.211184 ACAGTCCATATGCAAAGAAAATTGGA 59.789 34.615 0.00 0.00 35.04 3.53
31 32 6.400568 ACAGTCCATATGCAAAGAAAATTGG 58.599 36.000 0.00 0.00 0.00 3.16
32 33 7.274904 CAGACAGTCCATATGCAAAGAAAATTG 59.725 37.037 0.00 0.00 0.00 2.32
33 34 7.039504 ACAGACAGTCCATATGCAAAGAAAATT 60.040 33.333 0.00 0.00 0.00 1.82
34 35 6.435277 ACAGACAGTCCATATGCAAAGAAAAT 59.565 34.615 0.00 0.00 0.00 1.82
35 36 5.769662 ACAGACAGTCCATATGCAAAGAAAA 59.230 36.000 0.00 0.00 0.00 2.29
36 37 5.316167 ACAGACAGTCCATATGCAAAGAAA 58.684 37.500 0.00 0.00 0.00 2.52
37 38 4.910195 ACAGACAGTCCATATGCAAAGAA 58.090 39.130 0.00 0.00 0.00 2.52
38 39 4.558226 ACAGACAGTCCATATGCAAAGA 57.442 40.909 0.00 0.00 0.00 2.52
39 40 4.696877 TCAACAGACAGTCCATATGCAAAG 59.303 41.667 0.00 0.00 0.00 2.77
40 41 4.650734 TCAACAGACAGTCCATATGCAAA 58.349 39.130 0.00 0.00 0.00 3.68
41 42 4.284829 TCAACAGACAGTCCATATGCAA 57.715 40.909 0.00 0.00 0.00 4.08
42 43 3.979101 TCAACAGACAGTCCATATGCA 57.021 42.857 0.00 0.00 0.00 3.96
43 44 3.064545 GCTTCAACAGACAGTCCATATGC 59.935 47.826 0.00 0.00 0.00 3.14
44 45 4.256110 TGCTTCAACAGACAGTCCATATG 58.744 43.478 0.00 0.00 0.00 1.78
45 46 4.511527 CTGCTTCAACAGACAGTCCATAT 58.488 43.478 0.00 0.00 40.25 1.78
46 47 3.866066 GCTGCTTCAACAGACAGTCCATA 60.866 47.826 0.00 0.00 40.25 2.74
47 48 2.775890 CTGCTTCAACAGACAGTCCAT 58.224 47.619 0.00 0.00 40.25 3.41
48 49 1.811558 GCTGCTTCAACAGACAGTCCA 60.812 52.381 0.00 0.00 40.25 4.02
49 50 0.871057 GCTGCTTCAACAGACAGTCC 59.129 55.000 0.00 0.00 40.25 3.85
50 51 0.510359 CGCTGCTTCAACAGACAGTC 59.490 55.000 0.00 0.00 40.25 3.51
51 52 0.179073 ACGCTGCTTCAACAGACAGT 60.179 50.000 0.00 0.00 40.25 3.55
52 53 0.940126 AACGCTGCTTCAACAGACAG 59.060 50.000 0.00 0.00 40.25 3.51
53 54 1.378531 AAACGCTGCTTCAACAGACA 58.621 45.000 0.00 0.00 40.25 3.41
54 55 2.475200 AAAACGCTGCTTCAACAGAC 57.525 45.000 0.00 0.00 40.25 3.51
71 72 4.813750 TTGGACGTTTTTGGGGTAAAAA 57.186 36.364 0.00 0.00 43.88 1.94
72 73 4.813750 TTTGGACGTTTTTGGGGTAAAA 57.186 36.364 0.00 0.00 36.51 1.52
73 74 4.222366 ACTTTTGGACGTTTTTGGGGTAAA 59.778 37.500 0.00 0.00 0.00 2.01
74 75 3.768215 ACTTTTGGACGTTTTTGGGGTAA 59.232 39.130 0.00 0.00 0.00 2.85
75 76 3.363627 ACTTTTGGACGTTTTTGGGGTA 58.636 40.909 0.00 0.00 0.00 3.69
76 77 2.181125 ACTTTTGGACGTTTTTGGGGT 58.819 42.857 0.00 0.00 0.00 4.95
77 78 2.971660 ACTTTTGGACGTTTTTGGGG 57.028 45.000 0.00 0.00 0.00 4.96
78 79 6.912203 AATTAACTTTTGGACGTTTTTGGG 57.088 33.333 0.00 0.00 0.00 4.12
129 130 3.752222 CCATCTTGCATCCTAAGAGCATC 59.248 47.826 0.00 0.00 37.56 3.91
130 131 3.498121 CCCATCTTGCATCCTAAGAGCAT 60.498 47.826 0.00 0.00 37.56 3.79
131 132 2.158711 CCCATCTTGCATCCTAAGAGCA 60.159 50.000 0.00 0.00 37.56 4.26
132 133 2.502295 CCCATCTTGCATCCTAAGAGC 58.498 52.381 0.00 0.00 37.56 4.09
133 134 2.106166 AGCCCATCTTGCATCCTAAGAG 59.894 50.000 0.00 0.00 37.56 2.85
134 135 2.105477 GAGCCCATCTTGCATCCTAAGA 59.895 50.000 0.00 0.00 38.42 2.10
135 136 2.158711 TGAGCCCATCTTGCATCCTAAG 60.159 50.000 0.00 0.00 0.00 2.18
165 166 5.450592 TGCAAGCTGTCACAATTTTGATA 57.549 34.783 0.00 0.00 0.00 2.15
269 280 2.663188 CCGCTAGATCCAAGGCGC 60.663 66.667 0.00 0.00 45.21 6.53
300 311 1.007359 AGGGTCCCTAGTGACTTCCTC 59.993 57.143 9.39 0.00 35.54 3.71
303 314 3.318557 CGATAAGGGTCCCTAGTGACTTC 59.681 52.174 12.06 0.17 35.54 3.01
324 335 1.376812 GGTCAGTTTACCTGGGCCG 60.377 63.158 0.00 0.00 41.83 6.13
338 349 2.436911 AGCTCACTATGCATGATGGTCA 59.563 45.455 10.16 0.00 0.00 4.02
342 353 3.991367 TGAGAGCTCACTATGCATGATG 58.009 45.455 17.77 7.58 34.14 3.07
457 1091 6.347725 CCCATAGAAAGACACAAAAACGAGAG 60.348 42.308 0.00 0.00 0.00 3.20
490 1136 6.412072 GCTTATCGTTGTCTTGATGTATTTGC 59.588 38.462 0.00 0.00 0.00 3.68
496 1142 3.937814 TGGCTTATCGTTGTCTTGATGT 58.062 40.909 0.00 0.00 0.00 3.06
498 1144 4.201950 GCATTGGCTTATCGTTGTCTTGAT 60.202 41.667 0.00 0.00 36.96 2.57
501 1147 3.764885 GCATTGGCTTATCGTTGTCTT 57.235 42.857 0.00 0.00 36.96 3.01
585 1232 3.385749 ATGGATGTCGGCCACGGTC 62.386 63.158 2.24 3.12 38.44 4.79
645 1292 6.780522 GCTTTTCCCCCTTGAAATATATGGTA 59.219 38.462 0.00 0.00 34.41 3.25
648 1295 6.101650 GGCTTTTCCCCCTTGAAATATATG 57.898 41.667 0.00 0.00 34.41 1.78
664 1311 2.163613 CCGTGTATTTCCTGGGCTTTTC 59.836 50.000 0.00 0.00 0.00 2.29
669 1316 0.746923 GTCCCGTGTATTTCCTGGGC 60.747 60.000 0.00 0.00 39.82 5.36
670 1317 0.616371 TGTCCCGTGTATTTCCTGGG 59.384 55.000 0.00 0.00 41.43 4.45
719 1366 1.014564 CCTTTCGGTTGAGAGGACGC 61.015 60.000 0.00 0.00 46.96 5.19
805 1452 1.214062 GAGGACACGAGACCTGCAG 59.786 63.158 8.74 6.78 40.07 4.41
861 1508 0.035458 GTAATGGAGGATGGCGAGGG 59.965 60.000 0.00 0.00 0.00 4.30
862 1509 0.035458 GGTAATGGAGGATGGCGAGG 59.965 60.000 0.00 0.00 0.00 4.63
863 1510 0.758734 TGGTAATGGAGGATGGCGAG 59.241 55.000 0.00 0.00 0.00 5.03
898 1548 0.491823 TGGTTGGAGGAAGGAGAGGA 59.508 55.000 0.00 0.00 0.00 3.71
899 1549 1.488393 GATGGTTGGAGGAAGGAGAGG 59.512 57.143 0.00 0.00 0.00 3.69
900 1550 1.137872 CGATGGTTGGAGGAAGGAGAG 59.862 57.143 0.00 0.00 0.00 3.20
901 1551 1.195115 CGATGGTTGGAGGAAGGAGA 58.805 55.000 0.00 0.00 0.00 3.71
902 1552 0.905357 ACGATGGTTGGAGGAAGGAG 59.095 55.000 0.00 0.00 0.00 3.69
903 1553 0.902531 GACGATGGTTGGAGGAAGGA 59.097 55.000 0.00 0.00 0.00 3.36
911 1561 1.672854 TAGGCGAGGACGATGGTTGG 61.673 60.000 0.00 0.00 42.66 3.77
920 1570 2.957006 TGAGAGGTTTATAGGCGAGGAC 59.043 50.000 0.00 0.00 0.00 3.85
923 1573 2.617308 TCGTGAGAGGTTTATAGGCGAG 59.383 50.000 0.00 0.00 34.84 5.03
994 1649 2.060383 TGGGGCTCGACATGAGGAG 61.060 63.158 0.00 6.56 45.38 3.69
1137 1819 1.503347 GAGGAGGAGGAGGAGGAGAAT 59.497 57.143 0.00 0.00 0.00 2.40
1908 2617 1.767088 AGGAGGATAAAACGGGTAGCC 59.233 52.381 0.00 0.00 0.00 3.93
1910 2619 4.748277 TGAAGGAGGATAAAACGGGTAG 57.252 45.455 0.00 0.00 0.00 3.18
1924 2633 6.040955 TGTGCAGTCCTACTATAATGAAGGAG 59.959 42.308 0.00 0.00 38.79 3.69
1929 2640 5.208890 AGGTGTGCAGTCCTACTATAATGA 58.791 41.667 7.73 0.00 31.66 2.57
1963 2674 1.506309 TTCAGCATGCGTGTGTGTCC 61.506 55.000 13.01 0.00 34.76 4.02
2015 2726 3.243434 CGATCTGACGCCATTAACTACCT 60.243 47.826 0.00 0.00 0.00 3.08
2016 2727 3.050619 CGATCTGACGCCATTAACTACC 58.949 50.000 0.00 0.00 0.00 3.18
2017 2728 3.961182 TCGATCTGACGCCATTAACTAC 58.039 45.455 0.00 0.00 0.00 2.73
2018 2729 3.881089 TCTCGATCTGACGCCATTAACTA 59.119 43.478 0.00 0.00 0.00 2.24
2052 2767 0.879400 TCTCCGGACTACTCGATCGC 60.879 60.000 11.09 0.00 0.00 4.58
2063 2778 5.567138 AATCACATTGATTTTCTCCGGAC 57.433 39.130 0.00 0.00 44.03 4.79
2074 2789 6.406624 GCAGATGGAAGGAAAATCACATTGAT 60.407 38.462 0.00 0.00 39.09 2.57
2078 2793 3.379372 CGCAGATGGAAGGAAAATCACAT 59.621 43.478 0.00 0.00 0.00 3.21
2084 2799 2.368439 CATCCGCAGATGGAAGGAAAA 58.632 47.619 1.67 0.00 45.30 2.29
2111 2826 1.041437 GGAGCTAGAACCACCGCTAT 58.959 55.000 0.00 0.00 31.96 2.97
2137 2852 3.515502 TCCACTCTTGATCAACTACCAGG 59.484 47.826 3.38 2.63 0.00 4.45
2149 2864 4.700700 CATGATACATGCTCCACTCTTGA 58.299 43.478 0.00 0.00 0.00 3.02
2160 2875 8.077991 ACAACATATAGTTTGCATGATACATGC 58.922 33.333 23.96 23.96 40.97 4.06
2213 2935 6.060788 ACAAAAGCAAAATATCTGGCCAAAA 58.939 32.000 7.01 0.00 0.00 2.44
2220 2942 8.649841 CCACACAATACAAAAGCAAAATATCTG 58.350 33.333 0.00 0.00 0.00 2.90
2236 2958 9.109393 TCTCTTTTATTATGAGCCACACAATAC 57.891 33.333 0.00 0.00 29.15 1.89
2255 2977 2.093973 ACCGTGCATCTCGATCTCTTTT 60.094 45.455 0.00 0.00 0.00 2.27
2257 2979 1.107114 ACCGTGCATCTCGATCTCTT 58.893 50.000 0.00 0.00 0.00 2.85
2265 2987 0.459237 CCTCACTCACCGTGCATCTC 60.459 60.000 0.00 0.00 43.46 2.75
2275 2997 3.356529 AATCCCATTGTCCTCACTCAC 57.643 47.619 0.00 0.00 0.00 3.51
2276 2998 4.387026 AAAATCCCATTGTCCTCACTCA 57.613 40.909 0.00 0.00 0.00 3.41
2299 3021 6.971602 TGGTATTATCGCTTCAAACAAAACA 58.028 32.000 0.00 0.00 0.00 2.83
2300 3022 7.060633 CACTGGTATTATCGCTTCAAACAAAAC 59.939 37.037 0.00 0.00 0.00 2.43
2385 3110 5.973565 CCAAAAATATGCAAGTAGCTAGTGC 59.026 40.000 18.41 18.41 45.94 4.40
2386 3111 7.320443 TCCAAAAATATGCAAGTAGCTAGTG 57.680 36.000 0.73 0.73 45.94 2.74
2387 3112 7.067494 CCTTCCAAAAATATGCAAGTAGCTAGT 59.933 37.037 0.00 0.00 45.94 2.57
2388 3113 7.420800 CCTTCCAAAAATATGCAAGTAGCTAG 58.579 38.462 0.00 0.00 45.94 3.42
2389 3114 6.183360 GCCTTCCAAAAATATGCAAGTAGCTA 60.183 38.462 0.00 0.00 45.94 3.32
2390 3115 5.394553 GCCTTCCAAAAATATGCAAGTAGCT 60.395 40.000 0.00 0.00 45.94 3.32
2412 3137 0.546598 AACCACCACTATAGCCTGCC 59.453 55.000 0.00 0.00 0.00 4.85
2431 3156 3.275999 GCCTTGATACCGGCTCTAAAAA 58.724 45.455 0.00 0.00 42.98 1.94
2432 3157 2.914059 GCCTTGATACCGGCTCTAAAA 58.086 47.619 0.00 0.00 42.98 1.52
2433 3158 2.614829 GCCTTGATACCGGCTCTAAA 57.385 50.000 0.00 0.00 42.98 1.85
2439 3164 2.561419 TCACTATAGCCTTGATACCGGC 59.439 50.000 0.00 0.00 46.65 6.13
2440 3165 4.382040 CCATCACTATAGCCTTGATACCGG 60.382 50.000 0.00 0.00 0.00 5.28
2441 3166 4.220821 ACCATCACTATAGCCTTGATACCG 59.779 45.833 0.00 0.00 0.00 4.02
2442 3167 5.746990 ACCATCACTATAGCCTTGATACC 57.253 43.478 0.00 0.00 0.00 2.73
2443 3168 8.299990 AGATACCATCACTATAGCCTTGATAC 57.700 38.462 0.00 0.00 0.00 2.24
2444 3169 8.901472 AAGATACCATCACTATAGCCTTGATA 57.099 34.615 0.00 0.00 0.00 2.15
2445 3170 7.805083 AAGATACCATCACTATAGCCTTGAT 57.195 36.000 0.00 0.00 0.00 2.57
2446 3171 7.093727 GCTAAGATACCATCACTATAGCCTTGA 60.094 40.741 0.00 0.00 0.00 3.02
2447 3172 7.038659 GCTAAGATACCATCACTATAGCCTTG 58.961 42.308 0.00 0.00 0.00 3.61
2448 3173 6.155393 GGCTAAGATACCATCACTATAGCCTT 59.845 42.308 12.05 0.00 46.69 4.35
2449 3174 5.659079 GGCTAAGATACCATCACTATAGCCT 59.341 44.000 12.05 0.00 46.69 4.58
2450 3175 5.450688 CGGCTAAGATACCATCACTATAGCC 60.451 48.000 9.81 9.81 46.72 3.93
2451 3176 5.450688 CCGGCTAAGATACCATCACTATAGC 60.451 48.000 0.00 0.00 35.08 2.97
2452 3177 5.652891 ACCGGCTAAGATACCATCACTATAG 59.347 44.000 0.00 0.00 0.00 1.31
2453 3178 5.577100 ACCGGCTAAGATACCATCACTATA 58.423 41.667 0.00 0.00 0.00 1.31
2454 3179 4.417437 ACCGGCTAAGATACCATCACTAT 58.583 43.478 0.00 0.00 0.00 2.12
2455 3180 3.840991 ACCGGCTAAGATACCATCACTA 58.159 45.455 0.00 0.00 0.00 2.74
2456 3181 2.679082 ACCGGCTAAGATACCATCACT 58.321 47.619 0.00 0.00 0.00 3.41
2457 3182 4.219944 TGATACCGGCTAAGATACCATCAC 59.780 45.833 0.00 0.00 0.00 3.06
2458 3183 4.412843 TGATACCGGCTAAGATACCATCA 58.587 43.478 0.00 0.00 0.00 3.07
2459 3184 5.352284 CATGATACCGGCTAAGATACCATC 58.648 45.833 0.00 0.00 0.00 3.51
2460 3185 4.383118 GCATGATACCGGCTAAGATACCAT 60.383 45.833 0.00 0.00 0.00 3.55
2461 3186 3.056107 GCATGATACCGGCTAAGATACCA 60.056 47.826 0.00 0.00 0.00 3.25
2462 3187 3.056107 TGCATGATACCGGCTAAGATACC 60.056 47.826 0.00 0.00 0.00 2.73
2463 3188 4.188247 TGCATGATACCGGCTAAGATAC 57.812 45.455 0.00 0.00 0.00 2.24
2464 3189 5.046663 TGAATGCATGATACCGGCTAAGATA 60.047 40.000 0.00 0.00 0.00 1.98
2465 3190 3.988976 ATGCATGATACCGGCTAAGAT 57.011 42.857 0.00 0.00 0.00 2.40
2466 3191 3.070878 TGAATGCATGATACCGGCTAAGA 59.929 43.478 0.00 0.00 0.00 2.10
2513 3238 8.755977 ACCTTCTTGTTCTTCCGTAATTATCTA 58.244 33.333 0.00 0.00 0.00 1.98
2515 3240 7.845066 ACCTTCTTGTTCTTCCGTAATTATC 57.155 36.000 0.00 0.00 0.00 1.75
2517 3242 8.587608 TCTAACCTTCTTGTTCTTCCGTAATTA 58.412 33.333 0.00 0.00 0.00 1.40
2523 3248 4.884247 ACTCTAACCTTCTTGTTCTTCCG 58.116 43.478 0.00 0.00 0.00 4.30
2524 3249 6.365518 CGTTACTCTAACCTTCTTGTTCTTCC 59.634 42.308 0.00 0.00 35.27 3.46
2532 3257 9.850198 ATCTATCTACGTTACTCTAACCTTCTT 57.150 33.333 0.00 0.00 35.27 2.52
2548 3273 9.626045 TTTATTGTGATGCAGTATCTATCTACG 57.374 33.333 0.00 0.00 36.71 3.51
2557 3282 9.293404 AGCTTATCATTTATTGTGATGCAGTAT 57.707 29.630 0.00 0.00 36.96 2.12
2558 3283 8.681486 AGCTTATCATTTATTGTGATGCAGTA 57.319 30.769 0.00 0.00 36.96 2.74
2559 3284 7.578310 AGCTTATCATTTATTGTGATGCAGT 57.422 32.000 0.00 0.00 36.96 4.40
2592 3317 8.786898 GCCTATCTTATTTATTGTCTTGCATGA 58.213 33.333 0.00 0.00 0.00 3.07
2593 3318 8.790718 AGCCTATCTTATTTATTGTCTTGCATG 58.209 33.333 0.00 0.00 0.00 4.06
2594 3319 8.930846 AGCCTATCTTATTTATTGTCTTGCAT 57.069 30.769 0.00 0.00 0.00 3.96
2595 3320 7.992608 TGAGCCTATCTTATTTATTGTCTTGCA 59.007 33.333 0.00 0.00 0.00 4.08
2596 3321 8.383318 TGAGCCTATCTTATTTATTGTCTTGC 57.617 34.615 0.00 0.00 0.00 4.01
2606 3331 9.594936 AGTAGTGTAGATGAGCCTATCTTATTT 57.405 33.333 5.72 0.00 38.35 1.40
2608 3333 9.675464 GTAGTAGTGTAGATGAGCCTATCTTAT 57.325 37.037 5.72 0.00 38.35 1.73
2609 3334 8.882282 AGTAGTAGTGTAGATGAGCCTATCTTA 58.118 37.037 5.72 0.00 38.35 2.10
2610 3335 7.751646 AGTAGTAGTGTAGATGAGCCTATCTT 58.248 38.462 5.72 0.00 38.35 2.40
2611 3336 7.324388 AGTAGTAGTGTAGATGAGCCTATCT 57.676 40.000 5.72 5.72 40.39 1.98
2614 3339 9.097946 TGTATAGTAGTAGTGTAGATGAGCCTA 57.902 37.037 0.00 0.00 0.00 3.93
2615 3340 7.879160 GTGTATAGTAGTAGTGTAGATGAGCCT 59.121 40.741 0.00 0.00 0.00 4.58
2616 3341 7.660617 TGTGTATAGTAGTAGTGTAGATGAGCC 59.339 40.741 0.00 0.00 0.00 4.70
2617 3342 8.604640 TGTGTATAGTAGTAGTGTAGATGAGC 57.395 38.462 0.00 0.00 0.00 4.26
2626 3351 9.684448 CCATCTTCATTGTGTATAGTAGTAGTG 57.316 37.037 0.00 0.00 0.00 2.74
2627 3352 9.422681 ACCATCTTCATTGTGTATAGTAGTAGT 57.577 33.333 0.00 0.00 0.00 2.73
2636 3361 9.494271 GTGTATGATACCATCTTCATTGTGTAT 57.506 33.333 0.00 0.00 34.52 2.29
2637 3362 8.704668 AGTGTATGATACCATCTTCATTGTGTA 58.295 33.333 0.00 0.00 34.52 2.90
2638 3363 7.568349 AGTGTATGATACCATCTTCATTGTGT 58.432 34.615 0.00 0.00 34.52 3.72
2639 3364 9.201127 CTAGTGTATGATACCATCTTCATTGTG 57.799 37.037 0.00 0.00 34.52 3.33
2640 3365 8.928448 ACTAGTGTATGATACCATCTTCATTGT 58.072 33.333 0.00 0.00 34.52 2.71
2688 3413 9.990868 TTAGGCTAATCATAGTGGAGTATCATA 57.009 33.333 2.04 0.00 36.25 2.15
2689 3414 8.901472 TTAGGCTAATCATAGTGGAGTATCAT 57.099 34.615 2.04 0.00 36.25 2.45
2690 3415 8.721133 TTTAGGCTAATCATAGTGGAGTATCA 57.279 34.615 7.96 0.00 36.25 2.15
2691 3416 9.026121 TCTTTAGGCTAATCATAGTGGAGTATC 57.974 37.037 7.96 0.00 0.00 2.24
2692 3417 8.808092 GTCTTTAGGCTAATCATAGTGGAGTAT 58.192 37.037 7.96 0.00 0.00 2.12
2693 3418 7.040617 CGTCTTTAGGCTAATCATAGTGGAGTA 60.041 40.741 7.96 0.00 0.00 2.59
2694 3419 6.239064 CGTCTTTAGGCTAATCATAGTGGAGT 60.239 42.308 7.96 0.00 0.00 3.85
2695 3420 6.016192 TCGTCTTTAGGCTAATCATAGTGGAG 60.016 42.308 7.96 0.00 0.00 3.86
2696 3421 5.831525 TCGTCTTTAGGCTAATCATAGTGGA 59.168 40.000 7.96 2.43 0.00 4.02
2697 3422 6.085555 TCGTCTTTAGGCTAATCATAGTGG 57.914 41.667 7.96 0.26 0.00 4.00
2698 3423 8.297426 TGTATCGTCTTTAGGCTAATCATAGTG 58.703 37.037 7.96 1.07 0.00 2.74
2699 3424 8.405418 TGTATCGTCTTTAGGCTAATCATAGT 57.595 34.615 7.96 0.00 0.00 2.12
2700 3425 9.347934 CTTGTATCGTCTTTAGGCTAATCATAG 57.652 37.037 7.96 2.58 0.00 2.23
2701 3426 8.857098 ACTTGTATCGTCTTTAGGCTAATCATA 58.143 33.333 7.96 0.00 0.00 2.15
2702 3427 7.727181 ACTTGTATCGTCTTTAGGCTAATCAT 58.273 34.615 7.96 0.00 0.00 2.45
2703 3428 7.108841 ACTTGTATCGTCTTTAGGCTAATCA 57.891 36.000 7.96 0.00 0.00 2.57
2704 3429 8.966194 GTAACTTGTATCGTCTTTAGGCTAATC 58.034 37.037 7.96 1.68 0.00 1.75
2705 3430 8.693625 AGTAACTTGTATCGTCTTTAGGCTAAT 58.306 33.333 7.96 0.00 0.00 1.73
2706 3431 7.972277 CAGTAACTTGTATCGTCTTTAGGCTAA 59.028 37.037 2.04 2.04 0.00 3.09
2707 3432 7.337689 TCAGTAACTTGTATCGTCTTTAGGCTA 59.662 37.037 0.00 0.00 0.00 3.93
2708 3433 6.152323 TCAGTAACTTGTATCGTCTTTAGGCT 59.848 38.462 0.00 0.00 0.00 4.58
2709 3434 6.327934 TCAGTAACTTGTATCGTCTTTAGGC 58.672 40.000 0.00 0.00 0.00 3.93
2710 3435 9.666626 CTATCAGTAACTTGTATCGTCTTTAGG 57.333 37.037 0.00 0.00 0.00 2.69
2711 3436 9.666626 CCTATCAGTAACTTGTATCGTCTTTAG 57.333 37.037 0.00 0.00 0.00 1.85
2712 3437 9.182214 ACCTATCAGTAACTTGTATCGTCTTTA 57.818 33.333 0.00 0.00 0.00 1.85
2713 3438 8.064336 ACCTATCAGTAACTTGTATCGTCTTT 57.936 34.615 0.00 0.00 0.00 2.52
2714 3439 7.642082 ACCTATCAGTAACTTGTATCGTCTT 57.358 36.000 0.00 0.00 0.00 3.01
2715 3440 7.416438 CCAACCTATCAGTAACTTGTATCGTCT 60.416 40.741 0.00 0.00 0.00 4.18
2716 3441 6.696148 CCAACCTATCAGTAACTTGTATCGTC 59.304 42.308 0.00 0.00 0.00 4.20
2717 3442 6.379133 TCCAACCTATCAGTAACTTGTATCGT 59.621 38.462 0.00 0.00 0.00 3.73
2718 3443 6.802608 TCCAACCTATCAGTAACTTGTATCG 58.197 40.000 0.00 0.00 0.00 2.92
2719 3444 9.099454 CTTTCCAACCTATCAGTAACTTGTATC 57.901 37.037 0.00 0.00 0.00 2.24
2720 3445 8.603304 ACTTTCCAACCTATCAGTAACTTGTAT 58.397 33.333 0.00 0.00 0.00 2.29
2721 3446 7.876068 CACTTTCCAACCTATCAGTAACTTGTA 59.124 37.037 0.00 0.00 0.00 2.41
2722 3447 6.710744 CACTTTCCAACCTATCAGTAACTTGT 59.289 38.462 0.00 0.00 0.00 3.16
2723 3448 6.348540 GCACTTTCCAACCTATCAGTAACTTG 60.349 42.308 0.00 0.00 0.00 3.16
2724 3449 5.705905 GCACTTTCCAACCTATCAGTAACTT 59.294 40.000 0.00 0.00 0.00 2.66
2725 3450 5.221843 TGCACTTTCCAACCTATCAGTAACT 60.222 40.000 0.00 0.00 0.00 2.24
2726 3451 5.001232 TGCACTTTCCAACCTATCAGTAAC 58.999 41.667 0.00 0.00 0.00 2.50
2727 3452 5.235850 TGCACTTTCCAACCTATCAGTAA 57.764 39.130 0.00 0.00 0.00 2.24
2728 3453 4.323485 CCTGCACTTTCCAACCTATCAGTA 60.323 45.833 0.00 0.00 0.00 2.74
2729 3454 3.560025 CCTGCACTTTCCAACCTATCAGT 60.560 47.826 0.00 0.00 0.00 3.41
2730 3455 3.012518 CCTGCACTTTCCAACCTATCAG 58.987 50.000 0.00 0.00 0.00 2.90
2731 3456 2.375174 ACCTGCACTTTCCAACCTATCA 59.625 45.455 0.00 0.00 0.00 2.15
2732 3457 3.073274 ACCTGCACTTTCCAACCTATC 57.927 47.619 0.00 0.00 0.00 2.08
2733 3458 3.525800 AACCTGCACTTTCCAACCTAT 57.474 42.857 0.00 0.00 0.00 2.57
2734 3459 4.440826 TTAACCTGCACTTTCCAACCTA 57.559 40.909 0.00 0.00 0.00 3.08
2735 3460 3.306472 TTAACCTGCACTTTCCAACCT 57.694 42.857 0.00 0.00 0.00 3.50
2736 3461 4.306600 CAATTAACCTGCACTTTCCAACC 58.693 43.478 0.00 0.00 0.00 3.77
2737 3462 3.740832 GCAATTAACCTGCACTTTCCAAC 59.259 43.478 6.51 0.00 39.69 3.77
2738 3463 3.386078 TGCAATTAACCTGCACTTTCCAA 59.614 39.130 9.45 0.00 44.67 3.53
2739 3464 2.961741 TGCAATTAACCTGCACTTTCCA 59.038 40.909 9.45 0.00 44.67 3.53
2740 3465 3.658757 TGCAATTAACCTGCACTTTCC 57.341 42.857 9.45 0.00 44.67 3.13
2747 3472 1.472026 CCAGCCATGCAATTAACCTGC 60.472 52.381 0.00 4.72 40.35 4.85
2748 3473 1.826720 ACCAGCCATGCAATTAACCTG 59.173 47.619 0.00 0.00 0.00 4.00
2749 3474 1.826720 CACCAGCCATGCAATTAACCT 59.173 47.619 0.00 0.00 0.00 3.50
2750 3475 1.824230 TCACCAGCCATGCAATTAACC 59.176 47.619 0.00 0.00 0.00 2.85
2751 3476 2.493278 ACTCACCAGCCATGCAATTAAC 59.507 45.455 0.00 0.00 0.00 2.01
2752 3477 2.492881 CACTCACCAGCCATGCAATTAA 59.507 45.455 0.00 0.00 0.00 1.40
2753 3478 2.093890 CACTCACCAGCCATGCAATTA 58.906 47.619 0.00 0.00 0.00 1.40
2754 3479 0.892755 CACTCACCAGCCATGCAATT 59.107 50.000 0.00 0.00 0.00 2.32
2755 3480 0.251474 ACACTCACCAGCCATGCAAT 60.251 50.000 0.00 0.00 0.00 3.56
2756 3481 0.399833 TACACTCACCAGCCATGCAA 59.600 50.000 0.00 0.00 0.00 4.08
2757 3482 0.399833 TTACACTCACCAGCCATGCA 59.600 50.000 0.00 0.00 0.00 3.96
2758 3483 1.755179 ATTACACTCACCAGCCATGC 58.245 50.000 0.00 0.00 0.00 4.06
2759 3484 3.119388 CCAAATTACACTCACCAGCCATG 60.119 47.826 0.00 0.00 0.00 3.66
2760 3485 3.091545 CCAAATTACACTCACCAGCCAT 58.908 45.455 0.00 0.00 0.00 4.40
2761 3486 2.158534 ACCAAATTACACTCACCAGCCA 60.159 45.455 0.00 0.00 0.00 4.75
2762 3487 2.514803 ACCAAATTACACTCACCAGCC 58.485 47.619 0.00 0.00 0.00 4.85
2763 3488 5.699097 TTAACCAAATTACACTCACCAGC 57.301 39.130 0.00 0.00 0.00 4.85
2764 3489 8.561738 AGTATTAACCAAATTACACTCACCAG 57.438 34.615 0.00 0.00 0.00 4.00
2765 3490 9.439500 GTAGTATTAACCAAATTACACTCACCA 57.561 33.333 0.00 0.00 0.00 4.17
2766 3491 9.439500 TGTAGTATTAACCAAATTACACTCACC 57.561 33.333 0.00 0.00 0.00 4.02
2770 3495 8.943002 GCACTGTAGTATTAACCAAATTACACT 58.057 33.333 0.00 0.00 0.00 3.55
2771 3496 8.723311 TGCACTGTAGTATTAACCAAATTACAC 58.277 33.333 0.00 0.00 0.00 2.90
2772 3497 8.850007 TGCACTGTAGTATTAACCAAATTACA 57.150 30.769 0.00 0.00 0.00 2.41
2778 3503 9.899661 AGAATAATGCACTGTAGTATTAACCAA 57.100 29.630 0.00 0.00 31.46 3.67
2779 3504 9.899661 AAGAATAATGCACTGTAGTATTAACCA 57.100 29.630 0.00 0.00 31.46 3.67
2843 3568 3.840666 ACATGGACAAGTACTGGACTGAT 59.159 43.478 3.64 0.00 38.87 2.90
2845 3570 3.685139 ACATGGACAAGTACTGGACTG 57.315 47.619 3.64 0.00 38.87 3.51
2846 3571 3.008049 GGAACATGGACAAGTACTGGACT 59.992 47.826 3.64 0.00 41.56 3.85
2847 3572 3.008049 AGGAACATGGACAAGTACTGGAC 59.992 47.826 3.64 0.00 0.00 4.02
2850 3575 5.308825 AGAAAGGAACATGGACAAGTACTG 58.691 41.667 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.