Multiple sequence alignment - TraesCS5A01G312500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G312500 chr5A 100.000 3363 0 0 1 3363 524013412 524010050 0.000000e+00 6211.0
1 TraesCS5A01G312500 chr5D 87.149 1673 106 62 445 2075 412249599 412247994 0.000000e+00 1797.0
2 TraesCS5A01G312500 chr5D 84.443 1382 93 62 2042 3363 412247991 412246672 0.000000e+00 1249.0
3 TraesCS5A01G312500 chr5B 89.171 1025 42 23 2045 3033 495827999 495827008 0.000000e+00 1214.0
4 TraesCS5A01G312500 chr5B 88.512 766 58 23 1332 2075 495828762 495828005 0.000000e+00 900.0
5 TraesCS5A01G312500 chr5B 86.867 830 56 30 462 1261 495829604 495828798 0.000000e+00 880.0
6 TraesCS5A01G312500 chr5B 83.065 372 23 17 3019 3363 495826984 495826626 5.450000e-78 302.0
7 TraesCS5A01G312500 chr3B 97.959 49 0 1 1097 1144 659275883 659275835 2.150000e-12 84.2
8 TraesCS5A01G312500 chr3B 95.918 49 1 1 1097 1144 659297955 659297907 1.000000e-10 78.7
9 TraesCS5A01G312500 chr3B 95.918 49 1 1 1097 1144 659305263 659305215 1.000000e-10 78.7
10 TraesCS5A01G312500 chr3A 97.959 49 0 1 1097 1144 638467701 638467653 2.150000e-12 84.2
11 TraesCS5A01G312500 chr3A 97.959 49 0 1 1097 1144 638711299 638711251 2.150000e-12 84.2
12 TraesCS5A01G312500 chr3A 97.872 47 0 1 1099 1144 638446821 638446775 2.780000e-11 80.5
13 TraesCS5A01G312500 chr7D 86.765 68 3 3 1992 2056 25818474 25818410 1.670000e-08 71.3
14 TraesCS5A01G312500 chr4A 87.692 65 2 3 1992 2053 710243803 710243742 1.670000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G312500 chr5A 524010050 524013412 3362 True 6211 6211 100.00000 1 3363 1 chr5A.!!$R1 3362
1 TraesCS5A01G312500 chr5D 412246672 412249599 2927 True 1523 1797 85.79600 445 3363 2 chr5D.!!$R1 2918
2 TraesCS5A01G312500 chr5B 495826626 495829604 2978 True 824 1214 86.90375 462 3363 4 chr5B.!!$R1 2901

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
260 261 0.032267 GCTCCAGGTATCAGTACGGC 59.968 60.0 0.0 0.0 0.00 5.68 F
1302 1345 0.037975 CCAATTGCTTTGCTTCGCCT 60.038 50.0 0.0 0.0 33.73 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1308 1351 0.034756 AGCCAAACCAAAAATCCGGC 59.965 50.0 0.0 0.0 38.36 6.13 R
3095 3303 0.035317 TGCCACTAGAGCCACACAAG 59.965 55.0 0.0 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.784578 GGGGAAGAAAAGCTAAGTCAAAA 57.215 39.130 0.00 0.00 0.00 2.44
23 24 5.773575 GGGGAAGAAAAGCTAAGTCAAAAG 58.226 41.667 0.00 0.00 0.00 2.27
24 25 5.223382 GGGAAGAAAAGCTAAGTCAAAAGC 58.777 41.667 0.00 0.00 39.08 3.51
25 26 4.912187 GGAAGAAAAGCTAAGTCAAAAGCG 59.088 41.667 0.00 0.00 43.63 4.68
26 27 5.277828 GGAAGAAAAGCTAAGTCAAAAGCGA 60.278 40.000 0.00 0.00 43.63 4.93
27 28 5.948992 AGAAAAGCTAAGTCAAAAGCGAT 57.051 34.783 0.00 0.00 43.63 4.58
28 29 5.932661 AGAAAAGCTAAGTCAAAAGCGATC 58.067 37.500 0.00 0.00 43.63 3.69
29 30 3.999229 AAGCTAAGTCAAAAGCGATCG 57.001 42.857 11.69 11.69 43.63 3.69
30 31 1.661112 AGCTAAGTCAAAAGCGATCGC 59.339 47.619 32.15 32.15 43.63 4.58
31 32 1.393539 GCTAAGTCAAAAGCGATCGCA 59.606 47.619 38.60 17.80 44.88 5.10
32 33 2.030946 GCTAAGTCAAAAGCGATCGCAT 59.969 45.455 38.60 27.33 44.88 4.73
33 34 2.532531 AAGTCAAAAGCGATCGCATG 57.467 45.000 38.60 31.08 44.88 4.06
34 35 1.725641 AGTCAAAAGCGATCGCATGA 58.274 45.000 38.60 32.55 44.88 3.07
35 36 2.076100 AGTCAAAAGCGATCGCATGAA 58.924 42.857 38.60 18.78 44.88 2.57
36 37 2.094894 AGTCAAAAGCGATCGCATGAAG 59.905 45.455 38.60 24.02 44.88 3.02
37 38 2.094258 GTCAAAAGCGATCGCATGAAGA 59.906 45.455 38.60 25.69 44.88 2.87
38 39 2.938451 TCAAAAGCGATCGCATGAAGAT 59.062 40.909 38.60 16.25 44.88 2.40
39 40 3.033873 CAAAAGCGATCGCATGAAGATG 58.966 45.455 38.60 22.68 44.88 2.90
40 41 2.229675 AAGCGATCGCATGAAGATGA 57.770 45.000 38.60 0.00 44.88 2.92
41 42 2.229675 AGCGATCGCATGAAGATGAA 57.770 45.000 38.60 0.00 44.88 2.57
42 43 1.863454 AGCGATCGCATGAAGATGAAC 59.137 47.619 38.60 7.62 44.88 3.18
43 44 1.396440 GCGATCGCATGAAGATGAACG 60.396 52.381 33.89 7.52 41.49 3.95
44 45 1.854743 CGATCGCATGAAGATGAACGT 59.145 47.619 0.26 0.00 0.00 3.99
45 46 3.042887 CGATCGCATGAAGATGAACGTA 58.957 45.455 0.26 0.00 0.00 3.57
46 47 3.121663 CGATCGCATGAAGATGAACGTAC 60.122 47.826 0.26 0.00 0.00 3.67
47 48 2.182014 TCGCATGAAGATGAACGTACG 58.818 47.619 15.01 15.01 0.00 3.67
48 49 1.255342 CGCATGAAGATGAACGTACGG 59.745 52.381 21.06 1.43 0.00 4.02
49 50 1.004927 GCATGAAGATGAACGTACGGC 60.005 52.381 21.06 11.70 0.00 5.68
50 51 1.593006 CATGAAGATGAACGTACGGCC 59.407 52.381 21.06 11.04 0.00 6.13
51 52 0.457166 TGAAGATGAACGTACGGCCG 60.457 55.000 26.86 26.86 0.00 6.13
52 53 1.749609 GAAGATGAACGTACGGCCGC 61.750 60.000 28.58 9.25 0.00 6.53
53 54 3.259751 GATGAACGTACGGCCGCC 61.260 66.667 28.58 15.84 0.00 6.13
54 55 4.825252 ATGAACGTACGGCCGCCC 62.825 66.667 28.58 15.41 0.00 6.13
68 69 4.329545 GCCCCTGCTGACGGTCAA 62.330 66.667 12.54 0.00 33.53 3.18
69 70 2.671070 CCCCTGCTGACGGTCAAT 59.329 61.111 12.54 0.00 0.00 2.57
70 71 1.746615 CCCCTGCTGACGGTCAATG 60.747 63.158 12.54 2.65 0.00 2.82
71 72 1.003355 CCCTGCTGACGGTCAATGT 60.003 57.895 12.54 0.00 0.00 2.71
72 73 0.249120 CCCTGCTGACGGTCAATGTA 59.751 55.000 12.54 0.32 0.00 2.29
73 74 1.338674 CCCTGCTGACGGTCAATGTAA 60.339 52.381 12.54 0.00 0.00 2.41
74 75 2.422597 CCTGCTGACGGTCAATGTAAA 58.577 47.619 12.54 0.00 0.00 2.01
75 76 2.811431 CCTGCTGACGGTCAATGTAAAA 59.189 45.455 12.54 0.00 0.00 1.52
76 77 3.364964 CCTGCTGACGGTCAATGTAAAAC 60.365 47.826 12.54 0.00 0.00 2.43
77 78 3.206964 TGCTGACGGTCAATGTAAAACA 58.793 40.909 12.54 0.00 0.00 2.83
78 79 3.249799 TGCTGACGGTCAATGTAAAACAG 59.750 43.478 12.54 0.00 0.00 3.16
79 80 3.250040 GCTGACGGTCAATGTAAAACAGT 59.750 43.478 12.54 0.00 0.00 3.55
80 81 4.772434 CTGACGGTCAATGTAAAACAGTG 58.228 43.478 12.54 1.27 44.66 3.66
88 89 6.912203 TCAATGTAAAACAGTGAGACGAAA 57.088 33.333 6.13 0.00 46.53 3.46
89 90 6.711579 TCAATGTAAAACAGTGAGACGAAAC 58.288 36.000 6.13 0.00 46.53 2.78
90 91 4.765281 TGTAAAACAGTGAGACGAAACG 57.235 40.909 0.00 0.00 0.00 3.60
91 92 4.422840 TGTAAAACAGTGAGACGAAACGA 58.577 39.130 0.00 0.00 0.00 3.85
92 93 4.863689 TGTAAAACAGTGAGACGAAACGAA 59.136 37.500 0.00 0.00 0.00 3.85
93 94 4.932268 AAAACAGTGAGACGAAACGAAA 57.068 36.364 0.00 0.00 0.00 3.46
94 95 3.920112 AACAGTGAGACGAAACGAAAC 57.080 42.857 0.00 0.00 0.00 2.78
95 96 1.850441 ACAGTGAGACGAAACGAAACG 59.150 47.619 0.00 0.00 0.00 3.60
96 97 2.114056 CAGTGAGACGAAACGAAACGA 58.886 47.619 0.00 0.00 0.00 3.85
97 98 2.532723 CAGTGAGACGAAACGAAACGAA 59.467 45.455 0.00 0.00 0.00 3.85
98 99 2.787680 AGTGAGACGAAACGAAACGAAG 59.212 45.455 0.00 0.00 0.00 3.79
99 100 2.785477 GTGAGACGAAACGAAACGAAGA 59.215 45.455 0.00 0.00 0.00 2.87
100 101 2.785477 TGAGACGAAACGAAACGAAGAC 59.215 45.455 0.00 0.00 0.00 3.01
101 102 2.122564 AGACGAAACGAAACGAAGACC 58.877 47.619 0.00 0.00 0.00 3.85
102 103 0.848305 ACGAAACGAAACGAAGACCG 59.152 50.000 0.00 0.00 45.44 4.79
103 104 0.448379 CGAAACGAAACGAAGACCGC 60.448 55.000 0.00 0.00 43.32 5.68
104 105 0.448379 GAAACGAAACGAAGACCGCG 60.448 55.000 0.00 0.00 43.32 6.46
105 106 1.147557 AAACGAAACGAAGACCGCGT 61.148 50.000 4.92 0.00 44.94 6.01
106 107 1.814211 AACGAAACGAAGACCGCGTG 61.814 55.000 4.92 0.00 41.75 5.34
107 108 2.297912 CGAAACGAAGACCGCGTGT 61.298 57.895 4.92 1.93 41.75 4.49
108 109 1.485943 GAAACGAAGACCGCGTGTC 59.514 57.895 16.80 16.80 41.75 3.67
109 110 1.883725 GAAACGAAGACCGCGTGTCC 61.884 60.000 19.67 8.38 45.68 4.02
110 111 4.695231 ACGAAGACCGCGTGTCCG 62.695 66.667 19.67 18.53 45.68 4.79
111 112 4.695231 CGAAGACCGCGTGTCCGT 62.695 66.667 19.67 11.14 45.68 4.69
112 113 2.562912 GAAGACCGCGTGTCCGTA 59.437 61.111 19.67 0.00 45.68 4.02
113 114 1.799121 GAAGACCGCGTGTCCGTAC 60.799 63.158 19.67 8.73 45.68 3.67
114 115 3.599792 AAGACCGCGTGTCCGTACG 62.600 63.158 19.67 8.69 45.68 3.67
115 116 4.088762 GACCGCGTGTCCGTACGA 62.089 66.667 18.76 0.00 46.46 3.43
116 117 3.386867 GACCGCGTGTCCGTACGAT 62.387 63.158 18.76 0.00 46.46 3.73
117 118 2.649975 CCGCGTGTCCGTACGATC 60.650 66.667 18.76 9.68 46.46 3.69
118 119 3.009599 CGCGTGTCCGTACGATCG 61.010 66.667 18.76 14.88 46.46 3.69
126 127 4.704007 CGTACGATCGGACCCTTG 57.296 61.111 24.39 6.80 0.00 3.61
127 128 1.805254 CGTACGATCGGACCCTTGT 59.195 57.895 24.39 0.00 0.00 3.16
128 129 0.524816 CGTACGATCGGACCCTTGTG 60.525 60.000 24.39 5.64 0.00 3.33
129 130 0.804933 GTACGATCGGACCCTTGTGC 60.805 60.000 20.20 0.00 0.00 4.57
158 159 3.434319 GGTGCACACGGCCATGAG 61.434 66.667 20.43 0.00 43.89 2.90
159 160 3.434319 GTGCACACGGCCATGAGG 61.434 66.667 13.17 0.00 43.89 3.86
160 161 3.635191 TGCACACGGCCATGAGGA 61.635 61.111 5.45 0.00 43.89 3.71
161 162 2.821366 GCACACGGCCATGAGGAG 60.821 66.667 5.45 0.00 36.89 3.69
162 163 2.821366 CACACGGCCATGAGGAGC 60.821 66.667 5.45 0.00 36.89 4.70
163 164 3.005539 ACACGGCCATGAGGAGCT 61.006 61.111 5.45 0.00 36.89 4.09
164 165 1.685765 ACACGGCCATGAGGAGCTA 60.686 57.895 5.45 0.00 36.89 3.32
165 166 1.227380 CACGGCCATGAGGAGCTAC 60.227 63.158 2.24 0.00 36.89 3.58
166 167 1.381872 ACGGCCATGAGGAGCTACT 60.382 57.895 0.00 0.00 36.89 2.57
167 168 0.106167 ACGGCCATGAGGAGCTACTA 60.106 55.000 0.00 0.00 36.89 1.82
168 169 0.315568 CGGCCATGAGGAGCTACTAC 59.684 60.000 0.00 0.00 36.89 2.73
169 170 1.414158 GGCCATGAGGAGCTACTACA 58.586 55.000 0.00 0.00 36.89 2.74
170 171 1.342819 GGCCATGAGGAGCTACTACAG 59.657 57.143 0.00 0.00 36.89 2.74
171 172 1.270041 GCCATGAGGAGCTACTACAGC 60.270 57.143 0.00 0.00 42.68 4.40
172 173 3.858822 GCCATGAGGAGCTACTACAGCA 61.859 54.545 0.00 0.00 43.97 4.41
173 174 5.657949 GCCATGAGGAGCTACTACAGCAG 62.658 56.522 0.00 0.00 43.97 4.24
180 181 2.675519 CTACTACAGCAGCTGCAGC 58.324 57.895 38.24 31.53 45.16 5.25
181 182 0.108472 CTACTACAGCAGCTGCAGCA 60.108 55.000 38.24 22.06 45.16 4.41
182 183 0.390340 TACTACAGCAGCTGCAGCAC 60.390 55.000 38.24 29.01 45.16 4.40
183 184 2.737688 CTACAGCAGCTGCAGCACG 61.738 63.158 38.24 28.84 45.16 5.34
197 198 3.061848 CACGCGGCCATTCCCTTT 61.062 61.111 12.47 0.00 0.00 3.11
198 199 3.061848 ACGCGGCCATTCCCTTTG 61.062 61.111 12.47 0.00 0.00 2.77
199 200 3.061848 CGCGGCCATTCCCTTTGT 61.062 61.111 2.24 0.00 0.00 2.83
200 201 2.885113 GCGGCCATTCCCTTTGTC 59.115 61.111 2.24 0.00 0.00 3.18
201 202 3.051392 GCGGCCATTCCCTTTGTCG 62.051 63.158 2.24 0.00 0.00 4.35
202 203 1.376683 CGGCCATTCCCTTTGTCGA 60.377 57.895 2.24 0.00 0.00 4.20
203 204 1.644786 CGGCCATTCCCTTTGTCGAC 61.645 60.000 9.11 9.11 0.00 4.20
204 205 1.313091 GGCCATTCCCTTTGTCGACC 61.313 60.000 14.12 0.00 0.00 4.79
205 206 1.313091 GCCATTCCCTTTGTCGACCC 61.313 60.000 14.12 0.00 0.00 4.46
206 207 1.024579 CCATTCCCTTTGTCGACCCG 61.025 60.000 14.12 0.79 0.00 5.28
207 208 1.376812 ATTCCCTTTGTCGACCCGC 60.377 57.895 14.12 0.00 0.00 6.13
208 209 2.119484 ATTCCCTTTGTCGACCCGCA 62.119 55.000 14.12 0.00 0.00 5.69
209 210 2.725203 TTCCCTTTGTCGACCCGCAG 62.725 60.000 14.12 3.35 0.00 5.18
210 211 3.423154 CCTTTGTCGACCCGCAGC 61.423 66.667 14.12 0.00 0.00 5.25
211 212 2.357517 CTTTGTCGACCCGCAGCT 60.358 61.111 14.12 0.00 0.00 4.24
212 213 1.961277 CTTTGTCGACCCGCAGCTT 60.961 57.895 14.12 0.00 0.00 3.74
213 214 1.901650 CTTTGTCGACCCGCAGCTTC 61.902 60.000 14.12 0.00 0.00 3.86
214 215 4.717629 TGTCGACCCGCAGCTTCG 62.718 66.667 14.12 0.00 0.00 3.79
220 221 4.845580 CCCGCAGCTTCGCCTCAT 62.846 66.667 0.00 0.00 0.00 2.90
221 222 2.821366 CCGCAGCTTCGCCTCATT 60.821 61.111 0.00 0.00 0.00 2.57
222 223 2.402388 CGCAGCTTCGCCTCATTG 59.598 61.111 0.00 0.00 0.00 2.82
223 224 2.796651 GCAGCTTCGCCTCATTGG 59.203 61.111 0.00 0.00 39.35 3.16
224 225 2.768492 GCAGCTTCGCCTCATTGGG 61.768 63.158 0.00 0.00 36.00 4.12
230 231 4.431131 CGCCTCATTGGGGGCTGT 62.431 66.667 4.35 0.00 45.57 4.40
231 232 2.037847 GCCTCATTGGGGGCTGTT 59.962 61.111 4.35 0.00 44.48 3.16
232 233 2.353610 GCCTCATTGGGGGCTGTTG 61.354 63.158 4.35 0.00 44.48 3.33
233 234 2.353610 CCTCATTGGGGGCTGTTGC 61.354 63.158 0.00 0.00 38.76 4.17
243 244 4.208632 GCTGTTGCCAGATACGCT 57.791 55.556 0.00 0.00 41.50 5.07
244 245 2.009888 GCTGTTGCCAGATACGCTC 58.990 57.895 0.00 0.00 41.50 5.03
245 246 1.432270 GCTGTTGCCAGATACGCTCC 61.432 60.000 0.00 0.00 41.50 4.70
246 247 0.108186 CTGTTGCCAGATACGCTCCA 60.108 55.000 0.00 0.00 41.50 3.86
247 248 0.108186 TGTTGCCAGATACGCTCCAG 60.108 55.000 0.00 0.00 0.00 3.86
248 249 0.811616 GTTGCCAGATACGCTCCAGG 60.812 60.000 0.00 0.00 0.00 4.45
249 250 1.264749 TTGCCAGATACGCTCCAGGT 61.265 55.000 0.00 0.00 0.00 4.00
250 251 0.396556 TGCCAGATACGCTCCAGGTA 60.397 55.000 0.00 0.00 0.00 3.08
251 252 0.969894 GCCAGATACGCTCCAGGTAT 59.030 55.000 0.00 0.00 33.45 2.73
252 253 1.067495 GCCAGATACGCTCCAGGTATC 60.067 57.143 4.24 4.24 44.15 2.24
253 254 2.239400 CCAGATACGCTCCAGGTATCA 58.761 52.381 12.78 0.00 45.51 2.15
254 255 2.230025 CCAGATACGCTCCAGGTATCAG 59.770 54.545 12.78 6.17 45.51 2.90
255 256 2.887783 CAGATACGCTCCAGGTATCAGT 59.112 50.000 12.78 0.00 45.51 3.41
256 257 4.072839 CAGATACGCTCCAGGTATCAGTA 58.927 47.826 12.78 0.00 45.51 2.74
257 258 4.073549 AGATACGCTCCAGGTATCAGTAC 58.926 47.826 12.78 0.00 45.51 2.73
258 259 1.022735 ACGCTCCAGGTATCAGTACG 58.977 55.000 0.00 0.00 0.00 3.67
259 260 0.311165 CGCTCCAGGTATCAGTACGG 59.689 60.000 0.00 0.00 0.00 4.02
260 261 0.032267 GCTCCAGGTATCAGTACGGC 59.968 60.000 0.00 0.00 0.00 5.68
261 262 1.399714 CTCCAGGTATCAGTACGGCA 58.600 55.000 0.00 0.00 0.00 5.69
262 263 1.338337 CTCCAGGTATCAGTACGGCAG 59.662 57.143 0.00 0.00 0.00 4.85
263 264 1.112113 CCAGGTATCAGTACGGCAGT 58.888 55.000 0.00 0.00 0.00 4.40
264 265 2.092267 TCCAGGTATCAGTACGGCAGTA 60.092 50.000 0.00 0.00 0.00 2.74
265 266 2.891580 CCAGGTATCAGTACGGCAGTAT 59.108 50.000 0.00 0.00 35.01 2.12
266 267 4.077108 CCAGGTATCAGTACGGCAGTATA 58.923 47.826 0.00 0.00 35.01 1.47
267 268 4.521639 CCAGGTATCAGTACGGCAGTATAA 59.478 45.833 0.00 0.00 35.01 0.98
268 269 5.010314 CCAGGTATCAGTACGGCAGTATAAA 59.990 44.000 0.00 0.00 35.01 1.40
269 270 6.150318 CAGGTATCAGTACGGCAGTATAAAG 58.850 44.000 0.00 0.00 35.01 1.85
270 271 5.243283 AGGTATCAGTACGGCAGTATAAAGG 59.757 44.000 0.00 0.00 35.01 3.11
271 272 3.447918 TCAGTACGGCAGTATAAAGGC 57.552 47.619 0.00 0.00 35.01 4.35
272 273 2.761767 TCAGTACGGCAGTATAAAGGCA 59.238 45.455 0.00 0.00 35.01 4.75
273 274 3.196039 TCAGTACGGCAGTATAAAGGCAA 59.804 43.478 0.00 0.00 35.01 4.52
274 275 3.936453 CAGTACGGCAGTATAAAGGCAAA 59.064 43.478 0.00 0.00 35.01 3.68
275 276 4.393680 CAGTACGGCAGTATAAAGGCAAAA 59.606 41.667 0.00 0.00 35.01 2.44
276 277 4.634443 AGTACGGCAGTATAAAGGCAAAAG 59.366 41.667 0.00 0.00 35.01 2.27
277 278 2.163613 ACGGCAGTATAAAGGCAAAAGC 59.836 45.455 0.00 0.00 0.00 3.51
278 279 2.791158 CGGCAGTATAAAGGCAAAAGCG 60.791 50.000 0.00 0.00 0.00 4.68
279 280 2.163613 GGCAGTATAAAGGCAAAAGCGT 59.836 45.455 0.00 0.00 0.00 5.07
280 281 3.375922 GGCAGTATAAAGGCAAAAGCGTA 59.624 43.478 0.00 0.00 0.00 4.42
281 282 4.340263 GCAGTATAAAGGCAAAAGCGTAC 58.660 43.478 0.00 0.00 0.00 3.67
282 283 4.142773 GCAGTATAAAGGCAAAAGCGTACA 60.143 41.667 0.00 0.00 0.00 2.90
283 284 5.560148 CAGTATAAAGGCAAAAGCGTACAG 58.440 41.667 0.00 0.00 0.00 2.74
284 285 4.634443 AGTATAAAGGCAAAAGCGTACAGG 59.366 41.667 0.00 0.00 0.00 4.00
285 286 0.313987 AAAGGCAAAAGCGTACAGGC 59.686 50.000 0.00 0.00 0.00 4.85
286 287 0.821711 AAGGCAAAAGCGTACAGGCA 60.822 50.000 0.00 0.00 34.64 4.75
287 288 1.081442 GGCAAAAGCGTACAGGCAC 60.081 57.895 0.00 0.00 34.64 5.01
288 289 1.515521 GGCAAAAGCGTACAGGCACT 61.516 55.000 0.00 0.00 43.88 4.40
289 290 0.110192 GCAAAAGCGTACAGGCACTC 60.110 55.000 0.00 0.00 34.60 3.51
290 291 0.517316 CAAAAGCGTACAGGCACTCC 59.483 55.000 0.00 0.00 34.60 3.85
291 292 0.605589 AAAAGCGTACAGGCACTCCC 60.606 55.000 0.00 0.00 34.60 4.30
292 293 1.764571 AAAGCGTACAGGCACTCCCA 61.765 55.000 0.00 0.00 34.60 4.37
293 294 2.125512 GCGTACAGGCACTCCCAG 60.126 66.667 0.00 0.00 34.60 4.45
294 295 2.943978 GCGTACAGGCACTCCCAGT 61.944 63.158 0.00 0.00 34.60 4.00
295 296 1.215647 CGTACAGGCACTCCCAGTC 59.784 63.158 0.00 0.00 34.60 3.51
296 297 1.597461 GTACAGGCACTCCCAGTCC 59.403 63.158 0.00 0.00 34.60 3.85
297 298 1.157513 TACAGGCACTCCCAGTCCA 59.842 57.895 0.00 0.00 34.60 4.02
298 299 0.472925 TACAGGCACTCCCAGTCCAA 60.473 55.000 0.00 0.00 34.60 3.53
299 300 1.002868 CAGGCACTCCCAGTCCAAG 60.003 63.158 0.00 0.00 34.60 3.61
300 301 2.227036 AGGCACTCCCAGTCCAAGG 61.227 63.158 0.00 0.00 35.39 3.61
302 303 3.081554 CACTCCCAGTCCAAGGGG 58.918 66.667 0.00 0.00 46.77 4.79
303 304 2.936032 ACTCCCAGTCCAAGGGGC 60.936 66.667 0.00 0.00 46.77 5.80
304 305 2.935481 CTCCCAGTCCAAGGGGCA 60.935 66.667 0.00 0.00 46.77 5.36
305 306 2.935481 TCCCAGTCCAAGGGGCAG 60.935 66.667 0.00 0.00 46.77 4.85
306 307 3.260100 CCCAGTCCAAGGGGCAGT 61.260 66.667 0.00 0.00 42.90 4.40
307 308 1.923395 CCCAGTCCAAGGGGCAGTA 60.923 63.158 0.00 0.00 42.90 2.74
308 309 1.604378 CCAGTCCAAGGGGCAGTAG 59.396 63.158 0.00 0.00 0.00 2.57
309 310 0.909610 CCAGTCCAAGGGGCAGTAGA 60.910 60.000 0.00 0.00 0.00 2.59
310 311 0.539051 CAGTCCAAGGGGCAGTAGAG 59.461 60.000 0.00 0.00 0.00 2.43
311 312 0.117340 AGTCCAAGGGGCAGTAGAGT 59.883 55.000 0.00 0.00 0.00 3.24
312 313 1.361543 AGTCCAAGGGGCAGTAGAGTA 59.638 52.381 0.00 0.00 0.00 2.59
313 314 1.757699 GTCCAAGGGGCAGTAGAGTAG 59.242 57.143 0.00 0.00 0.00 2.57
314 315 1.123928 CCAAGGGGCAGTAGAGTAGG 58.876 60.000 0.00 0.00 0.00 3.18
315 316 1.622725 CCAAGGGGCAGTAGAGTAGGT 60.623 57.143 0.00 0.00 0.00 3.08
316 317 1.482593 CAAGGGGCAGTAGAGTAGGTG 59.517 57.143 0.00 0.00 0.00 4.00
317 318 0.711184 AGGGGCAGTAGAGTAGGTGT 59.289 55.000 0.00 0.00 0.00 4.16
318 319 1.112950 GGGGCAGTAGAGTAGGTGTC 58.887 60.000 0.00 0.00 0.00 3.67
319 320 0.739561 GGGCAGTAGAGTAGGTGTCG 59.260 60.000 0.00 0.00 0.00 4.35
320 321 0.100861 GGCAGTAGAGTAGGTGTCGC 59.899 60.000 0.00 0.00 0.00 5.19
321 322 0.100861 GCAGTAGAGTAGGTGTCGCC 59.899 60.000 0.00 0.00 37.58 5.54
322 323 0.377554 CAGTAGAGTAGGTGTCGCCG 59.622 60.000 0.00 0.00 43.70 6.46
323 324 1.063811 GTAGAGTAGGTGTCGCCGC 59.936 63.158 0.00 0.00 43.70 6.53
324 325 1.077930 TAGAGTAGGTGTCGCCGCT 60.078 57.895 0.00 0.00 43.70 5.52
325 326 1.374343 TAGAGTAGGTGTCGCCGCTG 61.374 60.000 7.19 0.00 43.70 5.18
326 327 3.701604 GAGTAGGTGTCGCCGCTGG 62.702 68.421 7.19 0.00 43.70 4.85
336 337 3.264897 GCCGCTGGCTGATACACG 61.265 66.667 11.61 0.00 46.69 4.49
337 338 2.184322 CCGCTGGCTGATACACGT 59.816 61.111 0.00 0.00 0.00 4.49
338 339 1.435925 CCGCTGGCTGATACACGTA 59.564 57.895 0.00 0.00 0.00 3.57
339 340 0.870307 CCGCTGGCTGATACACGTAC 60.870 60.000 0.00 0.00 0.00 3.67
340 341 1.200474 CGCTGGCTGATACACGTACG 61.200 60.000 15.01 15.01 0.00 3.67
341 342 0.179145 GCTGGCTGATACACGTACGT 60.179 55.000 16.72 16.72 0.00 3.57
342 343 1.823828 CTGGCTGATACACGTACGTC 58.176 55.000 19.94 7.98 0.00 4.34
343 344 0.097499 TGGCTGATACACGTACGTCG 59.903 55.000 19.94 16.17 46.00 5.12
344 345 0.590732 GGCTGATACACGTACGTCGG 60.591 60.000 19.94 13.37 44.69 4.79
345 346 1.198608 GCTGATACACGTACGTCGGC 61.199 60.000 19.94 19.35 44.69 5.54
346 347 0.922560 CTGATACACGTACGTCGGCG 60.923 60.000 19.94 8.42 44.69 6.46
347 348 2.277501 ATACACGTACGTCGGCGC 60.278 61.111 19.94 0.00 44.69 6.53
348 349 2.901413 GATACACGTACGTCGGCGCA 62.901 60.000 19.94 0.00 44.69 6.09
349 350 2.327002 ATACACGTACGTCGGCGCAT 62.327 55.000 19.94 0.24 44.69 4.73
350 351 3.897502 CACGTACGTCGGCGCATG 61.898 66.667 19.94 4.29 44.69 4.06
353 354 3.261951 GTACGTCGGCGCATGCAT 61.262 61.111 19.57 0.00 45.35 3.96
354 355 3.261216 TACGTCGGCGCATGCATG 61.261 61.111 22.70 22.70 45.35 4.06
363 364 2.025013 GCATGCATGCGCGATTCA 59.975 55.556 33.99 0.00 44.67 2.57
364 365 1.371267 GCATGCATGCGCGATTCAT 60.371 52.632 33.99 0.00 44.67 2.57
365 366 0.937699 GCATGCATGCGCGATTCATT 60.938 50.000 33.99 0.00 44.67 2.57
366 367 1.050009 CATGCATGCGCGATTCATTC 58.950 50.000 14.93 0.00 42.97 2.67
367 368 0.949397 ATGCATGCGCGATTCATTCT 59.051 45.000 12.10 0.00 42.97 2.40
368 369 1.580815 TGCATGCGCGATTCATTCTA 58.419 45.000 12.10 0.00 42.97 2.10
369 370 1.261354 TGCATGCGCGATTCATTCTAC 59.739 47.619 12.10 0.00 42.97 2.59
370 371 1.528586 GCATGCGCGATTCATTCTACT 59.471 47.619 12.10 0.00 0.00 2.57
371 372 2.731451 GCATGCGCGATTCATTCTACTA 59.269 45.455 12.10 0.00 0.00 1.82
372 373 3.181536 GCATGCGCGATTCATTCTACTAG 60.182 47.826 12.10 0.00 0.00 2.57
373 374 2.394708 TGCGCGATTCATTCTACTAGC 58.605 47.619 12.10 0.00 0.00 3.42
380 381 7.513190 GCGATTCATTCTACTAGCGATTATT 57.487 36.000 0.00 0.00 0.00 1.40
381 382 8.616377 GCGATTCATTCTACTAGCGATTATTA 57.384 34.615 0.00 0.00 0.00 0.98
382 383 9.239002 GCGATTCATTCTACTAGCGATTATTAT 57.761 33.333 0.00 0.00 0.00 1.28
390 391 8.289939 TCTACTAGCGATTATTATTACCCAGG 57.710 38.462 0.00 0.00 0.00 4.45
391 392 6.930068 ACTAGCGATTATTATTACCCAGGT 57.070 37.500 0.00 0.00 0.00 4.00
392 393 6.932947 ACTAGCGATTATTATTACCCAGGTC 58.067 40.000 0.00 0.00 0.00 3.85
393 394 4.817517 AGCGATTATTATTACCCAGGTCG 58.182 43.478 0.00 0.00 0.00 4.79
394 395 3.930848 GCGATTATTATTACCCAGGTCGG 59.069 47.826 0.00 0.00 0.00 4.79
395 396 3.930848 CGATTATTATTACCCAGGTCGGC 59.069 47.826 0.00 0.00 0.00 5.54
396 397 4.561938 CGATTATTATTACCCAGGTCGGCA 60.562 45.833 0.00 0.00 0.00 5.69
397 398 4.774660 TTATTATTACCCAGGTCGGCAA 57.225 40.909 0.00 0.00 0.00 4.52
398 399 2.406596 TTATTACCCAGGTCGGCAAC 57.593 50.000 0.00 0.00 0.00 4.17
416 417 4.729856 GCTTGGGTCGGCGTACGT 62.730 66.667 17.90 0.00 44.69 3.57
417 418 2.876955 CTTGGGTCGGCGTACGTA 59.123 61.111 17.90 0.00 44.69 3.57
418 419 1.514873 CTTGGGTCGGCGTACGTAC 60.515 63.158 17.90 15.90 44.69 3.67
419 420 1.926511 CTTGGGTCGGCGTACGTACT 61.927 60.000 22.55 0.00 44.69 2.73
420 421 0.675208 TTGGGTCGGCGTACGTACTA 60.675 55.000 22.55 3.77 44.69 1.82
421 422 1.352056 GGGTCGGCGTACGTACTAC 59.648 63.158 22.55 14.38 44.69 2.73
422 423 1.366111 GGGTCGGCGTACGTACTACA 61.366 60.000 22.55 2.13 44.69 2.74
423 424 0.247695 GGTCGGCGTACGTACTACAC 60.248 60.000 22.55 13.14 44.69 2.90
440 441 3.266376 CGTCGGCGTTGTGTTGGT 61.266 61.111 6.85 0.00 0.00 3.67
441 442 2.815298 CGTCGGCGTTGTGTTGGTT 61.815 57.895 6.85 0.00 0.00 3.67
442 443 1.298041 GTCGGCGTTGTGTTGGTTG 60.298 57.895 6.85 0.00 0.00 3.77
443 444 2.653766 CGGCGTTGTGTTGGTTGC 60.654 61.111 0.00 0.00 0.00 4.17
486 487 1.471287 GGATGTTTTACTTGCCCCGTC 59.529 52.381 0.00 0.00 0.00 4.79
515 516 2.035469 AATCCACCCACATGCGCA 59.965 55.556 14.96 14.96 0.00 6.09
519 520 4.088762 CACCCACATGCGCACGAC 62.089 66.667 14.90 0.00 0.00 4.34
524 525 3.711842 ACATGCGCACGACGGTTG 61.712 61.111 14.90 8.00 43.93 3.77
529 530 4.368808 CGCACGACGGTTGCTTGG 62.369 66.667 8.56 0.00 38.44 3.61
530 531 2.970324 GCACGACGGTTGCTTGGA 60.970 61.111 0.00 0.00 0.00 3.53
532 533 2.030562 ACGACGGTTGCTTGGAGG 59.969 61.111 0.00 0.00 0.00 4.30
533 534 3.423154 CGACGGTTGCTTGGAGGC 61.423 66.667 0.00 0.00 0.00 4.70
534 535 2.032681 GACGGTTGCTTGGAGGCT 59.967 61.111 0.00 0.00 0.00 4.58
535 536 2.032681 ACGGTTGCTTGGAGGCTC 59.967 61.111 5.78 5.78 0.00 4.70
537 538 2.759795 GGTTGCTTGGAGGCTCCT 59.240 61.111 32.28 0.00 37.46 3.69
548 555 3.223589 GGCTCCTCTCCTCTCGGC 61.224 72.222 0.00 0.00 0.00 5.54
597 605 1.689273 CCCTGTCCCTGAGCTGTATAC 59.311 57.143 0.00 0.00 0.00 1.47
610 618 3.073946 AGCTGTATACTCTCCTCCTCCTC 59.926 52.174 4.17 0.00 0.00 3.71
611 619 3.812882 GCTGTATACTCTCCTCCTCCTCC 60.813 56.522 4.17 0.00 0.00 4.30
613 621 3.653836 TGTATACTCTCCTCCTCCTCCTC 59.346 52.174 4.17 0.00 0.00 3.71
615 623 0.254107 ACTCTCCTCCTCCTCCTCCT 60.254 60.000 0.00 0.00 0.00 3.69
621 629 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
623 631 0.998945 CCTCCTCCTCCTCCTCCTCT 60.999 65.000 0.00 0.00 0.00 3.69
624 632 0.185901 CTCCTCCTCCTCCTCCTCTG 59.814 65.000 0.00 0.00 0.00 3.35
626 634 1.827789 CTCCTCCTCCTCCTCTGCG 60.828 68.421 0.00 0.00 0.00 5.18
627 635 3.535962 CCTCCTCCTCCTCTGCGC 61.536 72.222 0.00 0.00 0.00 6.09
685 703 1.075151 CCCTCCCACCTACCTCTCC 60.075 68.421 0.00 0.00 0.00 3.71
769 798 3.823330 ACCCGCGATCGTGTCTCC 61.823 66.667 25.58 3.04 0.00 3.71
770 799 3.518998 CCCGCGATCGTGTCTCCT 61.519 66.667 25.58 0.00 0.00 3.69
771 800 2.024871 CCGCGATCGTGTCTCCTC 59.975 66.667 25.58 1.56 0.00 3.71
772 801 2.351322 CGCGATCGTGTCTCCTCG 60.351 66.667 20.28 6.80 0.00 4.63
773 802 2.792599 GCGATCGTGTCTCCTCGT 59.207 61.111 17.81 0.00 33.80 4.18
801 830 1.738346 GCCCCGATCCAGCAAATTCC 61.738 60.000 0.00 0.00 0.00 3.01
915 946 1.266718 TCGTGCTTGGATTGTTCTTGC 59.733 47.619 0.00 0.00 0.00 4.01
918 949 3.311966 GTGCTTGGATTGTTCTTGCTTC 58.688 45.455 0.00 0.00 0.00 3.86
932 963 1.815840 GCTTCTTGCCGAGGGTAGC 60.816 63.158 0.00 0.00 35.15 3.58
954 985 3.198489 GCTGCTAGGGTTGCTCGC 61.198 66.667 0.00 0.00 0.00 5.03
969 1000 2.248487 GCTCGCTTGATTCTTTGCTTG 58.752 47.619 0.00 0.00 0.00 4.01
970 1001 2.351157 GCTCGCTTGATTCTTTGCTTGT 60.351 45.455 0.00 0.00 0.00 3.16
971 1002 3.231965 CTCGCTTGATTCTTTGCTTGTG 58.768 45.455 0.00 0.00 0.00 3.33
972 1003 1.717645 CGCTTGATTCTTTGCTTGTGC 59.282 47.619 0.00 0.00 40.20 4.57
973 1004 1.717645 GCTTGATTCTTTGCTTGTGCG 59.282 47.619 0.00 0.00 43.34 5.34
976 1007 2.499197 TGATTCTTTGCTTGTGCGGTA 58.501 42.857 0.00 0.00 43.34 4.02
978 1009 1.669604 TTCTTTGCTTGTGCGGTACA 58.330 45.000 0.00 0.00 43.34 2.90
979 1010 1.890876 TCTTTGCTTGTGCGGTACAT 58.109 45.000 0.00 0.00 43.34 2.29
980 1011 3.046968 TCTTTGCTTGTGCGGTACATA 57.953 42.857 0.00 0.00 43.34 2.29
981 1012 3.000041 TCTTTGCTTGTGCGGTACATAG 59.000 45.455 0.00 2.43 43.34 2.23
982 1013 2.753055 TTGCTTGTGCGGTACATAGA 57.247 45.000 0.00 0.00 43.34 1.98
1065 1102 4.716977 ACCACCTCCCCCGTCTCC 62.717 72.222 0.00 0.00 0.00 3.71
1211 1254 1.264288 CCTCAAGGTCAAGTTCAACGC 59.736 52.381 0.00 0.00 0.00 4.84
1235 1278 3.252215 GTCTCCCACGAGATCTACATCAG 59.748 52.174 0.00 0.00 46.75 2.90
1245 1288 1.050988 TCTACATCAGCTCCCAGGCC 61.051 60.000 0.00 0.00 0.00 5.19
1264 1307 0.739462 CTCCTTCGGTAATGCACGCA 60.739 55.000 0.00 0.00 0.00 5.24
1267 1310 1.602191 CTTCGGTAATGCACGCAAAC 58.398 50.000 0.00 0.00 0.00 2.93
1271 1314 1.402194 CGGTAATGCACGCAAACCAAT 60.402 47.619 20.49 0.00 36.45 3.16
1272 1315 2.258755 GGTAATGCACGCAAACCAATC 58.741 47.619 17.48 0.00 36.58 2.67
1273 1316 2.352225 GGTAATGCACGCAAACCAATCA 60.352 45.455 17.48 0.00 36.58 2.57
1275 1318 2.747396 ATGCACGCAAACCAATCAAT 57.253 40.000 0.00 0.00 0.00 2.57
1276 1319 2.063156 TGCACGCAAACCAATCAATC 57.937 45.000 0.00 0.00 0.00 2.67
1277 1320 1.339291 TGCACGCAAACCAATCAATCA 59.661 42.857 0.00 0.00 0.00 2.57
1278 1321 2.223900 TGCACGCAAACCAATCAATCAA 60.224 40.909 0.00 0.00 0.00 2.57
1279 1322 2.995258 GCACGCAAACCAATCAATCAAT 59.005 40.909 0.00 0.00 0.00 2.57
1280 1323 3.061161 GCACGCAAACCAATCAATCAATC 59.939 43.478 0.00 0.00 0.00 2.67
1283 1326 4.685628 ACGCAAACCAATCAATCAATCAAC 59.314 37.500 0.00 0.00 0.00 3.18
1295 1338 5.179742 TCAATCAATCAACCAATTGCTTTGC 59.820 36.000 11.38 0.00 36.72 3.68
1298 1341 4.751098 TCAATCAACCAATTGCTTTGCTTC 59.249 37.500 11.38 0.00 36.72 3.86
1299 1342 2.741612 TCAACCAATTGCTTTGCTTCG 58.258 42.857 11.38 0.00 35.63 3.79
1300 1343 1.192980 CAACCAATTGCTTTGCTTCGC 59.807 47.619 0.00 0.00 33.73 4.70
1302 1345 0.037975 CCAATTGCTTTGCTTCGCCT 60.038 50.000 0.00 0.00 33.73 5.52
1303 1346 1.606224 CCAATTGCTTTGCTTCGCCTT 60.606 47.619 0.00 0.00 33.73 4.35
1304 1347 1.458064 CAATTGCTTTGCTTCGCCTTG 59.542 47.619 0.00 0.00 0.00 3.61
1305 1348 0.668401 ATTGCTTTGCTTCGCCTTGC 60.668 50.000 0.00 0.00 0.00 4.01
1306 1349 1.737355 TTGCTTTGCTTCGCCTTGCT 61.737 50.000 0.00 0.00 0.00 3.91
1307 1350 1.443363 GCTTTGCTTCGCCTTGCTC 60.443 57.895 0.00 0.00 0.00 4.26
1308 1351 1.154338 CTTTGCTTCGCCTTGCTCG 60.154 57.895 0.00 0.00 0.00 5.03
1309 1352 3.254014 TTTGCTTCGCCTTGCTCGC 62.254 57.895 0.00 0.00 0.00 5.03
1320 1363 0.456653 CTTGCTCGCCGGATTTTTGG 60.457 55.000 5.05 0.00 0.00 3.28
1325 1368 0.315568 TCGCCGGATTTTTGGTTTGG 59.684 50.000 5.05 0.00 0.00 3.28
1329 1372 1.337728 CCGGATTTTTGGTTTGGCTCC 60.338 52.381 0.00 0.00 0.00 4.70
1330 1373 1.618343 CGGATTTTTGGTTTGGCTCCT 59.382 47.619 0.00 0.00 0.00 3.69
1402 1447 2.527887 CGACGTGAAGAAGATGATGTCG 59.472 50.000 0.00 0.00 40.34 4.35
1642 1687 2.125673 CTCGCCACCAAGGTACCG 60.126 66.667 6.18 0.00 40.61 4.02
1653 1698 3.696084 GGTACCGACCACTCTGCT 58.304 61.111 0.00 0.00 46.12 4.24
1654 1699 1.511768 GGTACCGACCACTCTGCTC 59.488 63.158 0.00 0.00 46.12 4.26
1655 1700 1.136984 GTACCGACCACTCTGCTCG 59.863 63.158 0.00 0.00 0.00 5.03
1658 1703 2.807045 CGACCACTCTGCTCGTGC 60.807 66.667 1.71 1.71 40.20 5.34
1659 1704 2.653702 GACCACTCTGCTCGTGCT 59.346 61.111 11.19 0.00 40.48 4.40
1660 1705 1.445238 GACCACTCTGCTCGTGCTC 60.445 63.158 11.19 0.00 40.48 4.26
1661 1706 2.505777 CCACTCTGCTCGTGCTCG 60.506 66.667 11.19 0.81 40.48 5.03
1662 1707 3.177920 CACTCTGCTCGTGCTCGC 61.178 66.667 11.19 0.00 40.48 5.03
1663 1708 4.767841 ACTCTGCTCGTGCTCGCG 62.768 66.667 11.19 0.00 40.48 5.87
1675 1720 4.394712 CTCGCGCCCTTCCCTTGT 62.395 66.667 0.00 0.00 0.00 3.16
1676 1721 3.901797 CTCGCGCCCTTCCCTTGTT 62.902 63.158 0.00 0.00 0.00 2.83
1677 1722 2.983592 CGCGCCCTTCCCTTGTTT 60.984 61.111 0.00 0.00 0.00 2.83
1679 1724 1.745890 GCGCCCTTCCCTTGTTTTT 59.254 52.632 0.00 0.00 0.00 1.94
1730 1781 0.101219 GCTGATCGAATTTGGGTGGC 59.899 55.000 0.00 0.00 0.00 5.01
1915 1972 0.872881 TACGCTCGGCCGAATTAAGC 60.873 55.000 30.53 25.97 0.00 3.09
1949 2006 4.496360 TCCGTTGACGAGCACATTAATTA 58.504 39.130 4.91 0.00 43.02 1.40
1950 2007 4.565166 TCCGTTGACGAGCACATTAATTAG 59.435 41.667 4.91 0.00 43.02 1.73
1953 2010 2.863740 TGACGAGCACATTAATTAGCCG 59.136 45.455 13.34 13.34 0.00 5.52
1955 2012 1.397190 CGAGCACATTAATTAGCCGCG 60.397 52.381 0.00 0.00 0.00 6.46
1957 2014 0.040425 GCACATTAATTAGCCGCGGG 60.040 55.000 29.38 9.17 0.00 6.13
1958 2015 0.591170 CACATTAATTAGCCGCGGGG 59.409 55.000 29.38 15.40 0.00 5.73
1984 2041 2.672478 CGAGCTGAACGGAACTGAATCT 60.672 50.000 0.00 0.00 0.00 2.40
1985 2042 2.926838 GAGCTGAACGGAACTGAATCTC 59.073 50.000 0.00 0.00 0.00 2.75
2322 2435 1.299316 CGGCCAGCAACAACAACAG 60.299 57.895 2.24 0.00 0.00 3.16
2415 2528 1.123928 GGTACATGCCTCTGCCTAGT 58.876 55.000 0.00 0.00 36.33 2.57
2460 2573 1.539929 CCATCAATCGACCTCTCTGCC 60.540 57.143 0.00 0.00 0.00 4.85
2510 2633 1.154225 GTGCCGATTGTTTGCTCCG 60.154 57.895 0.00 0.00 0.00 4.63
2541 2666 7.996098 TTATTCTTTCCTTTTTCTCGATGGT 57.004 32.000 0.00 0.00 0.00 3.55
2543 2668 6.709018 TTCTTTCCTTTTTCTCGATGGTTT 57.291 33.333 0.00 0.00 0.00 3.27
2544 2669 6.313744 TCTTTCCTTTTTCTCGATGGTTTC 57.686 37.500 0.00 0.00 0.00 2.78
2546 2671 6.546034 TCTTTCCTTTTTCTCGATGGTTTCTT 59.454 34.615 0.00 0.00 0.00 2.52
2547 2672 5.941948 TCCTTTTTCTCGATGGTTTCTTC 57.058 39.130 0.00 0.00 0.00 2.87
2552 2686 4.617253 TTCTCGATGGTTTCTTCTTCCA 57.383 40.909 0.00 0.00 35.64 3.53
2555 2689 2.637872 TCGATGGTTTCTTCTTCCACCT 59.362 45.455 0.00 0.00 33.91 4.00
2556 2690 3.003480 CGATGGTTTCTTCTTCCACCTC 58.997 50.000 0.00 0.00 33.91 3.85
2557 2691 2.951229 TGGTTTCTTCTTCCACCTCC 57.049 50.000 0.00 0.00 0.00 4.30
2558 2692 2.131854 TGGTTTCTTCTTCCACCTCCA 58.868 47.619 0.00 0.00 0.00 3.86
2561 2695 4.152647 GGTTTCTTCTTCCACCTCCATTT 58.847 43.478 0.00 0.00 0.00 2.32
2564 2698 6.216569 GTTTCTTCTTCCACCTCCATTTTTC 58.783 40.000 0.00 0.00 0.00 2.29
2565 2699 5.324832 TCTTCTTCCACCTCCATTTTTCT 57.675 39.130 0.00 0.00 0.00 2.52
2569 2703 7.782644 TCTTCTTCCACCTCCATTTTTCTTTTA 59.217 33.333 0.00 0.00 0.00 1.52
2570 2704 7.284919 TCTTCCACCTCCATTTTTCTTTTAC 57.715 36.000 0.00 0.00 0.00 2.01
2583 2718 9.030301 CATTTTTCTTTTACATTTGTTCCGAGT 57.970 29.630 0.00 0.00 0.00 4.18
2584 2719 7.979115 TTTTCTTTTACATTTGTTCCGAGTG 57.021 32.000 0.00 0.00 0.00 3.51
2585 2720 6.687081 TTCTTTTACATTTGTTCCGAGTGT 57.313 33.333 0.00 0.00 0.00 3.55
2586 2721 7.789273 TTCTTTTACATTTGTTCCGAGTGTA 57.211 32.000 0.00 0.00 0.00 2.90
2668 2803 1.952266 GCGTGTTCGTCCATTCCGTC 61.952 60.000 0.00 0.00 39.49 4.79
2682 2827 4.778415 CGTCCCGTCCGTGCAGAG 62.778 72.222 0.00 0.00 0.00 3.35
2722 2867 7.255801 GGTGGTCTTAATGTGAAGGATTTTTCA 60.256 37.037 0.00 0.00 34.83 2.69
2724 2869 8.306038 TGGTCTTAATGTGAAGGATTTTTCATG 58.694 33.333 0.00 0.00 39.13 3.07
2725 2870 7.761249 GGTCTTAATGTGAAGGATTTTTCATGG 59.239 37.037 0.00 0.00 39.13 3.66
2726 2871 7.276438 GTCTTAATGTGAAGGATTTTTCATGGC 59.724 37.037 0.00 0.00 39.13 4.40
2728 2873 4.255833 TGTGAAGGATTTTTCATGGCAC 57.744 40.909 0.00 0.00 39.13 5.01
2774 2919 8.815912 AGCATGTATATGTGATTCATACCTACA 58.184 33.333 1.14 8.41 41.13 2.74
2775 2920 9.605275 GCATGTATATGTGATTCATACCTACAT 57.395 33.333 11.03 11.03 41.21 2.29
2818 2973 6.131264 TCTATGATTGGATTGCTTGGTTGAT 58.869 36.000 0.00 0.00 0.00 2.57
2819 2974 4.459390 TGATTGGATTGCTTGGTTGATG 57.541 40.909 0.00 0.00 0.00 3.07
2820 2975 4.087907 TGATTGGATTGCTTGGTTGATGA 58.912 39.130 0.00 0.00 0.00 2.92
2821 2976 3.940209 TTGGATTGCTTGGTTGATGAC 57.060 42.857 0.00 0.00 0.00 3.06
2822 2977 3.159213 TGGATTGCTTGGTTGATGACT 57.841 42.857 0.00 0.00 0.00 3.41
2823 2978 3.499338 TGGATTGCTTGGTTGATGACTT 58.501 40.909 0.00 0.00 0.00 3.01
2824 2979 3.256383 TGGATTGCTTGGTTGATGACTTG 59.744 43.478 0.00 0.00 0.00 3.16
2825 2980 3.507233 GGATTGCTTGGTTGATGACTTGA 59.493 43.478 0.00 0.00 0.00 3.02
2836 2991 3.634504 TGATGACTTGATTCCCCCATTG 58.365 45.455 0.00 0.00 0.00 2.82
2859 3016 0.108992 TCGCAAGTGGTGATCGTACC 60.109 55.000 0.00 0.00 41.24 3.34
2903 3063 2.027385 GATTTGGTGCTCTGGATTCCC 58.973 52.381 0.00 0.00 0.00 3.97
2928 3089 4.024670 TGCACCATGGATTGATTGATTGA 58.975 39.130 21.47 0.00 0.00 2.57
2929 3090 4.142116 TGCACCATGGATTGATTGATTGAC 60.142 41.667 21.47 0.00 0.00 3.18
2938 3099 2.170166 TGATTGATTGACTGGGGTTGC 58.830 47.619 0.00 0.00 0.00 4.17
2939 3100 2.225091 TGATTGATTGACTGGGGTTGCT 60.225 45.455 0.00 0.00 0.00 3.91
2941 3102 0.770499 TGATTGACTGGGGTTGCTGA 59.230 50.000 0.00 0.00 0.00 4.26
2942 3103 1.168714 GATTGACTGGGGTTGCTGAC 58.831 55.000 0.00 0.00 0.00 3.51
2991 3161 3.009723 ACGAATTACTGTTGGCCATGAG 58.990 45.455 6.09 8.28 0.00 2.90
2992 3162 3.270027 CGAATTACTGTTGGCCATGAGA 58.730 45.455 6.09 0.00 0.00 3.27
2993 3163 3.310774 CGAATTACTGTTGGCCATGAGAG 59.689 47.826 6.09 2.45 0.00 3.20
2994 3164 2.113860 TTACTGTTGGCCATGAGAGC 57.886 50.000 6.09 0.00 0.00 4.09
3093 3301 4.129737 TCGCCTGCCGCTGTACTC 62.130 66.667 0.00 0.00 36.73 2.59
3095 3303 2.202810 GCCTGCCGCTGTACTCTC 60.203 66.667 0.00 0.00 0.00 3.20
3096 3304 2.716017 GCCTGCCGCTGTACTCTCT 61.716 63.158 0.00 0.00 0.00 3.10
3097 3305 1.893786 CCTGCCGCTGTACTCTCTT 59.106 57.895 0.00 0.00 0.00 2.85
3109 3317 3.759086 TGTACTCTCTTGTGTGGCTCTAG 59.241 47.826 0.00 0.00 0.00 2.43
3113 3321 0.321671 TCTTGTGTGGCTCTAGTGGC 59.678 55.000 11.16 11.16 0.00 5.01
3133 3351 0.527565 AGATGATGGTTGCGTTTGGC 59.472 50.000 0.00 0.00 43.96 4.52
3134 3352 0.458370 GATGATGGTTGCGTTTGGCC 60.458 55.000 0.00 0.00 42.61 5.36
3136 3354 3.625082 GATGGTTGCGTTTGGCCGG 62.625 63.158 0.00 0.00 42.61 6.13
3138 3356 4.337060 GGTTGCGTTTGGCCGGTC 62.337 66.667 0.00 0.00 42.61 4.79
3139 3357 3.284449 GTTGCGTTTGGCCGGTCT 61.284 61.111 7.97 0.00 42.61 3.85
3140 3358 3.283684 TTGCGTTTGGCCGGTCTG 61.284 61.111 7.97 0.00 42.61 3.51
3141 3359 3.758973 TTGCGTTTGGCCGGTCTGA 62.759 57.895 7.97 0.00 42.61 3.27
3143 3361 2.332654 GCGTTTGGCCGGTCTGATT 61.333 57.895 7.97 0.00 34.80 2.57
3145 3363 1.006832 CGTTTGGCCGGTCTGATTAG 58.993 55.000 7.97 0.00 0.00 1.73
3147 3365 1.737793 GTTTGGCCGGTCTGATTAGTG 59.262 52.381 7.97 0.00 0.00 2.74
3196 3419 3.443045 CGCCATGTTCCTGGGTGC 61.443 66.667 0.00 0.00 36.75 5.01
3249 3478 2.124942 GACCTACAGCTGCAGGGC 60.125 66.667 32.02 28.21 36.15 5.19
3269 3498 2.979813 GCTGTTCCAAATTTGTACTGCG 59.020 45.455 23.60 9.13 31.59 5.18
3270 3499 3.564511 CTGTTCCAAATTTGTACTGCGG 58.435 45.455 16.73 0.00 0.00 5.69
3271 3500 2.287909 TGTTCCAAATTTGTACTGCGGC 60.288 45.455 16.73 0.00 0.00 6.53
3272 3501 1.904287 TCCAAATTTGTACTGCGGCT 58.096 45.000 16.73 0.00 0.00 5.52
3273 3502 3.060736 TCCAAATTTGTACTGCGGCTA 57.939 42.857 16.73 0.00 0.00 3.93
3274 3503 2.745281 TCCAAATTTGTACTGCGGCTAC 59.255 45.455 16.73 0.00 0.00 3.58
3275 3504 2.747446 CCAAATTTGTACTGCGGCTACT 59.253 45.455 16.73 0.00 0.00 2.57
3276 3505 3.426159 CCAAATTTGTACTGCGGCTACTG 60.426 47.826 16.73 0.00 0.00 2.74
3277 3506 1.369625 ATTTGTACTGCGGCTACTGC 58.630 50.000 0.00 0.00 38.76 4.40
3290 3519 0.532573 CTACTGCCCACGATGTCAGT 59.467 55.000 0.00 0.00 41.93 3.41
3348 3581 0.758123 AATGGTTTTGGCAGGGTGTG 59.242 50.000 0.00 0.00 0.00 3.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.773575 CTTTTGACTTAGCTTTTCTTCCCC 58.226 41.667 0.00 0.00 0.00 4.81
1 2 5.223382 GCTTTTGACTTAGCTTTTCTTCCC 58.777 41.667 0.00 0.00 34.57 3.97
3 4 5.748592 TCGCTTTTGACTTAGCTTTTCTTC 58.251 37.500 0.00 0.00 35.25 2.87
4 5 5.751243 TCGCTTTTGACTTAGCTTTTCTT 57.249 34.783 0.00 0.00 35.25 2.52
5 6 5.389935 CGATCGCTTTTGACTTAGCTTTTCT 60.390 40.000 0.26 0.00 35.25 2.52
6 7 4.783540 CGATCGCTTTTGACTTAGCTTTTC 59.216 41.667 0.26 0.00 35.25 2.29
7 8 4.712763 CGATCGCTTTTGACTTAGCTTTT 58.287 39.130 0.26 0.00 35.25 2.27
8 9 3.424962 GCGATCGCTTTTGACTTAGCTTT 60.425 43.478 31.94 0.00 38.26 3.51
9 10 2.094417 GCGATCGCTTTTGACTTAGCTT 59.906 45.455 31.94 0.00 38.26 3.74
10 11 1.661112 GCGATCGCTTTTGACTTAGCT 59.339 47.619 31.94 0.00 38.26 3.32
11 12 1.393539 TGCGATCGCTTTTGACTTAGC 59.606 47.619 37.01 7.51 42.51 3.09
12 13 3.306973 TCATGCGATCGCTTTTGACTTAG 59.693 43.478 37.01 18.00 42.51 2.18
13 14 3.258228 TCATGCGATCGCTTTTGACTTA 58.742 40.909 37.01 16.89 42.51 2.24
14 15 2.076100 TCATGCGATCGCTTTTGACTT 58.924 42.857 37.01 11.61 42.51 3.01
15 16 1.725641 TCATGCGATCGCTTTTGACT 58.274 45.000 37.01 12.76 42.51 3.41
16 17 2.094258 TCTTCATGCGATCGCTTTTGAC 59.906 45.455 37.01 10.53 42.51 3.18
17 18 2.345876 TCTTCATGCGATCGCTTTTGA 58.654 42.857 37.01 30.67 42.51 2.69
18 19 2.811902 TCTTCATGCGATCGCTTTTG 57.188 45.000 37.01 29.21 42.51 2.44
19 20 2.938451 TCATCTTCATGCGATCGCTTTT 59.062 40.909 37.01 20.99 42.51 2.27
20 21 2.554142 TCATCTTCATGCGATCGCTTT 58.446 42.857 37.01 23.43 42.51 3.51
21 22 2.229675 TCATCTTCATGCGATCGCTT 57.770 45.000 37.01 29.48 42.51 4.68
22 23 1.863454 GTTCATCTTCATGCGATCGCT 59.137 47.619 37.01 21.71 42.51 4.93
23 24 1.396440 CGTTCATCTTCATGCGATCGC 60.396 52.381 32.48 32.48 42.35 4.58
24 25 1.854743 ACGTTCATCTTCATGCGATCG 59.145 47.619 11.69 11.69 0.00 3.69
25 26 3.121663 CGTACGTTCATCTTCATGCGATC 60.122 47.826 7.22 0.00 0.00 3.69
26 27 2.789339 CGTACGTTCATCTTCATGCGAT 59.211 45.455 7.22 0.00 0.00 4.58
27 28 2.182014 CGTACGTTCATCTTCATGCGA 58.818 47.619 7.22 0.00 0.00 5.10
28 29 1.255342 CCGTACGTTCATCTTCATGCG 59.745 52.381 15.21 0.00 0.00 4.73
29 30 1.004927 GCCGTACGTTCATCTTCATGC 60.005 52.381 15.21 1.65 0.00 4.06
30 31 1.593006 GGCCGTACGTTCATCTTCATG 59.407 52.381 15.21 0.00 0.00 3.07
31 32 1.801395 CGGCCGTACGTTCATCTTCAT 60.801 52.381 19.50 0.00 0.00 2.57
32 33 0.457166 CGGCCGTACGTTCATCTTCA 60.457 55.000 19.50 0.00 0.00 3.02
33 34 1.749609 GCGGCCGTACGTTCATCTTC 61.750 60.000 28.70 0.08 35.98 2.87
34 35 1.808390 GCGGCCGTACGTTCATCTT 60.808 57.895 28.70 0.00 35.98 2.40
35 36 2.202703 GCGGCCGTACGTTCATCT 60.203 61.111 28.70 0.00 35.98 2.90
36 37 3.259751 GGCGGCCGTACGTTCATC 61.260 66.667 28.70 5.99 35.98 2.92
37 38 4.825252 GGGCGGCCGTACGTTCAT 62.825 66.667 28.70 0.00 35.98 2.57
51 52 3.628646 ATTGACCGTCAGCAGGGGC 62.629 63.158 0.64 0.00 35.92 5.80
52 53 1.746615 CATTGACCGTCAGCAGGGG 60.747 63.158 0.64 0.00 0.00 4.79
53 54 0.249120 TACATTGACCGTCAGCAGGG 59.751 55.000 0.64 0.00 0.00 4.45
54 55 2.093306 TTACATTGACCGTCAGCAGG 57.907 50.000 0.64 0.00 0.00 4.85
55 56 3.249799 TGTTTTACATTGACCGTCAGCAG 59.750 43.478 0.64 0.00 0.00 4.24
56 57 3.206964 TGTTTTACATTGACCGTCAGCA 58.793 40.909 0.64 0.00 0.00 4.41
57 58 3.250040 ACTGTTTTACATTGACCGTCAGC 59.750 43.478 0.64 0.00 0.00 4.26
58 59 4.509970 TCACTGTTTTACATTGACCGTCAG 59.490 41.667 0.64 0.00 33.64 3.51
59 60 4.443621 TCACTGTTTTACATTGACCGTCA 58.556 39.130 0.00 0.00 33.64 4.35
60 61 4.748102 TCTCACTGTTTTACATTGACCGTC 59.252 41.667 0.00 0.00 33.64 4.79
61 62 4.510340 GTCTCACTGTTTTACATTGACCGT 59.490 41.667 0.00 0.00 33.64 4.83
62 63 4.376008 CGTCTCACTGTTTTACATTGACCG 60.376 45.833 0.00 0.00 33.64 4.79
63 64 4.748102 TCGTCTCACTGTTTTACATTGACC 59.252 41.667 0.00 0.00 33.64 4.02
64 65 5.900339 TCGTCTCACTGTTTTACATTGAC 57.100 39.130 0.00 0.00 33.64 3.18
65 66 6.508880 CGTTTCGTCTCACTGTTTTACATTGA 60.509 38.462 0.00 0.00 35.77 2.57
66 67 5.615581 CGTTTCGTCTCACTGTTTTACATTG 59.384 40.000 0.00 0.00 30.99 2.82
67 68 5.521010 TCGTTTCGTCTCACTGTTTTACATT 59.479 36.000 0.00 0.00 0.00 2.71
68 69 5.045215 TCGTTTCGTCTCACTGTTTTACAT 58.955 37.500 0.00 0.00 0.00 2.29
69 70 4.422840 TCGTTTCGTCTCACTGTTTTACA 58.577 39.130 0.00 0.00 0.00 2.41
70 71 5.379757 TTCGTTTCGTCTCACTGTTTTAC 57.620 39.130 0.00 0.00 0.00 2.01
71 72 5.499017 CGTTTCGTTTCGTCTCACTGTTTTA 60.499 40.000 0.00 0.00 0.00 1.52
72 73 4.644954 GTTTCGTTTCGTCTCACTGTTTT 58.355 39.130 0.00 0.00 0.00 2.43
73 74 3.241868 CGTTTCGTTTCGTCTCACTGTTT 60.242 43.478 0.00 0.00 0.00 2.83
74 75 2.280708 CGTTTCGTTTCGTCTCACTGTT 59.719 45.455 0.00 0.00 0.00 3.16
75 76 1.850441 CGTTTCGTTTCGTCTCACTGT 59.150 47.619 0.00 0.00 0.00 3.55
76 77 2.114056 TCGTTTCGTTTCGTCTCACTG 58.886 47.619 0.00 0.00 0.00 3.66
77 78 2.480224 TCGTTTCGTTTCGTCTCACT 57.520 45.000 0.00 0.00 0.00 3.41
78 79 2.785477 TCTTCGTTTCGTTTCGTCTCAC 59.215 45.455 0.00 0.00 0.00 3.51
79 80 2.785477 GTCTTCGTTTCGTTTCGTCTCA 59.215 45.455 0.00 0.00 0.00 3.27
80 81 2.152678 GGTCTTCGTTTCGTTTCGTCTC 59.847 50.000 0.00 0.00 0.00 3.36
81 82 2.122564 GGTCTTCGTTTCGTTTCGTCT 58.877 47.619 0.00 0.00 0.00 4.18
82 83 1.137073 CGGTCTTCGTTTCGTTTCGTC 60.137 52.381 0.00 0.00 0.00 4.20
83 84 0.848305 CGGTCTTCGTTTCGTTTCGT 59.152 50.000 0.00 0.00 0.00 3.85
84 85 0.448379 GCGGTCTTCGTTTCGTTTCG 60.448 55.000 0.00 0.00 41.72 3.46
85 86 0.448379 CGCGGTCTTCGTTTCGTTTC 60.448 55.000 0.00 0.00 41.72 2.78
86 87 1.147557 ACGCGGTCTTCGTTTCGTTT 61.148 50.000 12.47 0.00 41.72 3.60
87 88 1.589727 ACGCGGTCTTCGTTTCGTT 60.590 52.632 12.47 0.00 41.72 3.85
88 89 2.026590 ACGCGGTCTTCGTTTCGT 59.973 55.556 12.47 0.00 41.72 3.85
89 90 2.194591 GACACGCGGTCTTCGTTTCG 62.195 60.000 12.47 0.00 43.46 3.46
90 91 1.485943 GACACGCGGTCTTCGTTTC 59.514 57.895 12.47 0.00 43.46 2.78
91 92 1.952635 GGACACGCGGTCTTCGTTT 60.953 57.895 21.54 0.00 46.16 3.60
92 93 2.355481 GGACACGCGGTCTTCGTT 60.355 61.111 21.54 0.00 46.16 3.85
93 94 4.695231 CGGACACGCGGTCTTCGT 62.695 66.667 21.54 5.66 46.16 3.85
94 95 3.313007 TACGGACACGCGGTCTTCG 62.313 63.158 21.54 19.41 46.16 3.79
95 96 1.799121 GTACGGACACGCGGTCTTC 60.799 63.158 21.54 8.41 46.16 2.87
96 97 2.256461 GTACGGACACGCGGTCTT 59.744 61.111 21.54 14.00 46.16 3.01
97 98 4.093952 CGTACGGACACGCGGTCT 62.094 66.667 21.54 9.96 46.16 3.85
98 99 3.386867 ATCGTACGGACACGCGGTC 62.387 63.158 16.52 14.94 46.04 4.79
99 100 3.386867 GATCGTACGGACACGCGGT 62.387 63.158 16.52 5.31 46.04 5.68
100 101 2.649975 GATCGTACGGACACGCGG 60.650 66.667 16.52 1.27 46.04 6.46
101 102 3.009599 CGATCGTACGGACACGCG 61.010 66.667 16.52 3.53 46.04 6.01
109 110 0.524816 CACAAGGGTCCGATCGTACG 60.525 60.000 15.09 9.53 0.00 3.67
110 111 0.804933 GCACAAGGGTCCGATCGTAC 60.805 60.000 15.09 8.53 0.00 3.67
111 112 1.514087 GCACAAGGGTCCGATCGTA 59.486 57.895 15.09 0.00 0.00 3.43
112 113 2.264794 GCACAAGGGTCCGATCGT 59.735 61.111 15.09 0.00 0.00 3.73
113 114 2.885644 CGCACAAGGGTCCGATCG 60.886 66.667 8.51 8.51 0.00 3.69
114 115 3.195698 GCGCACAAGGGTCCGATC 61.196 66.667 0.30 0.00 0.00 3.69
115 116 3.665675 GAGCGCACAAGGGTCCGAT 62.666 63.158 11.47 0.00 0.00 4.18
116 117 4.373116 GAGCGCACAAGGGTCCGA 62.373 66.667 11.47 0.00 0.00 4.55
141 142 3.434319 CTCATGGCCGTGTGCACC 61.434 66.667 24.24 4.74 43.89 5.01
142 143 3.434319 CCTCATGGCCGTGTGCAC 61.434 66.667 24.24 10.75 43.89 4.57
143 144 3.610619 CTCCTCATGGCCGTGTGCA 62.611 63.158 24.24 7.70 43.89 4.57
144 145 2.821366 CTCCTCATGGCCGTGTGC 60.821 66.667 24.24 0.00 40.16 4.57
145 146 1.960040 TAGCTCCTCATGGCCGTGTG 61.960 60.000 24.24 21.12 0.00 3.82
146 147 1.685765 TAGCTCCTCATGGCCGTGT 60.686 57.895 24.24 6.79 0.00 4.49
147 148 1.227380 GTAGCTCCTCATGGCCGTG 60.227 63.158 19.62 19.62 0.00 4.94
148 149 0.106167 TAGTAGCTCCTCATGGCCGT 60.106 55.000 0.00 0.00 0.00 5.68
149 150 0.315568 GTAGTAGCTCCTCATGGCCG 59.684 60.000 0.00 0.00 0.00 6.13
150 151 1.342819 CTGTAGTAGCTCCTCATGGCC 59.657 57.143 0.00 0.00 0.00 5.36
151 152 2.810439 CTGTAGTAGCTCCTCATGGC 57.190 55.000 0.00 0.00 0.00 4.40
162 163 0.108472 TGCTGCAGCTGCTGTAGTAG 60.108 55.000 36.36 26.33 44.11 2.57
163 164 0.390340 GTGCTGCAGCTGCTGTAGTA 60.390 55.000 36.36 32.58 44.11 1.82
164 165 1.670406 GTGCTGCAGCTGCTGTAGT 60.670 57.895 36.36 0.93 44.11 2.73
165 166 2.737688 CGTGCTGCAGCTGCTGTAG 61.738 63.158 36.19 34.17 44.84 2.74
166 167 2.739671 CGTGCTGCAGCTGCTGTA 60.740 61.111 36.19 32.21 42.66 2.74
180 181 3.061848 AAAGGGAATGGCCGCGTG 61.062 61.111 4.92 0.00 37.63 5.34
181 182 3.061848 CAAAGGGAATGGCCGCGT 61.062 61.111 4.92 0.00 37.63 6.01
182 183 3.051392 GACAAAGGGAATGGCCGCG 62.051 63.158 0.00 0.00 37.63 6.46
183 184 2.885113 GACAAAGGGAATGGCCGC 59.115 61.111 0.00 0.00 37.63 6.53
184 185 1.376683 TCGACAAAGGGAATGGCCG 60.377 57.895 0.00 0.00 37.63 6.13
185 186 1.313091 GGTCGACAAAGGGAATGGCC 61.313 60.000 18.91 0.00 0.00 5.36
186 187 1.313091 GGGTCGACAAAGGGAATGGC 61.313 60.000 18.91 0.00 0.00 4.40
187 188 1.024579 CGGGTCGACAAAGGGAATGG 61.025 60.000 18.91 0.00 0.00 3.16
188 189 1.644786 GCGGGTCGACAAAGGGAATG 61.645 60.000 18.91 0.00 0.00 2.67
189 190 1.376812 GCGGGTCGACAAAGGGAAT 60.377 57.895 18.91 0.00 0.00 3.01
190 191 2.031465 GCGGGTCGACAAAGGGAA 59.969 61.111 18.91 0.00 0.00 3.97
191 192 3.234630 CTGCGGGTCGACAAAGGGA 62.235 63.158 18.91 3.26 0.00 4.20
192 193 2.742372 CTGCGGGTCGACAAAGGG 60.742 66.667 18.91 2.12 0.00 3.95
193 194 3.423154 GCTGCGGGTCGACAAAGG 61.423 66.667 18.91 3.99 0.00 3.11
194 195 1.901650 GAAGCTGCGGGTCGACAAAG 61.902 60.000 18.91 8.78 0.00 2.77
195 196 1.959226 GAAGCTGCGGGTCGACAAA 60.959 57.895 18.91 0.00 0.00 2.83
196 197 2.357034 GAAGCTGCGGGTCGACAA 60.357 61.111 18.91 0.00 0.00 3.18
197 198 4.717629 CGAAGCTGCGGGTCGACA 62.718 66.667 18.91 0.00 0.00 4.35
210 211 2.830370 GCCCCCAATGAGGCGAAG 60.830 66.667 0.00 0.00 39.87 3.79
215 216 2.353610 GCAACAGCCCCCAATGAGG 61.354 63.158 0.00 0.00 37.03 3.86
216 217 2.353610 GGCAACAGCCCCCAATGAG 61.354 63.158 0.00 0.00 42.80 2.90
217 218 2.283821 GGCAACAGCCCCCAATGA 60.284 61.111 0.00 0.00 42.80 2.57
229 230 0.811616 CCTGGAGCGTATCTGGCAAC 60.812 60.000 0.00 0.00 0.00 4.17
230 231 1.264749 ACCTGGAGCGTATCTGGCAA 61.265 55.000 0.00 0.00 0.00 4.52
231 232 0.396556 TACCTGGAGCGTATCTGGCA 60.397 55.000 0.00 0.00 0.00 4.92
232 233 0.969894 ATACCTGGAGCGTATCTGGC 59.030 55.000 0.00 0.00 0.00 4.85
233 234 2.230025 CTGATACCTGGAGCGTATCTGG 59.770 54.545 0.00 2.87 41.70 3.86
234 235 2.887783 ACTGATACCTGGAGCGTATCTG 59.112 50.000 0.00 11.17 41.70 2.90
235 236 3.231207 ACTGATACCTGGAGCGTATCT 57.769 47.619 0.00 0.00 41.70 1.98
236 237 3.120269 CGTACTGATACCTGGAGCGTATC 60.120 52.174 0.00 0.00 41.58 2.24
237 238 2.812591 CGTACTGATACCTGGAGCGTAT 59.187 50.000 0.00 0.00 0.00 3.06
238 239 2.216046 CGTACTGATACCTGGAGCGTA 58.784 52.381 0.00 0.00 0.00 4.42
239 240 1.022735 CGTACTGATACCTGGAGCGT 58.977 55.000 0.00 0.00 0.00 5.07
240 241 0.311165 CCGTACTGATACCTGGAGCG 59.689 60.000 0.00 0.00 0.00 5.03
241 242 0.032267 GCCGTACTGATACCTGGAGC 59.968 60.000 0.00 0.00 0.00 4.70
242 243 1.338337 CTGCCGTACTGATACCTGGAG 59.662 57.143 0.00 0.00 0.00 3.86
243 244 1.341679 ACTGCCGTACTGATACCTGGA 60.342 52.381 0.00 0.00 0.00 3.86
244 245 1.112113 ACTGCCGTACTGATACCTGG 58.888 55.000 0.00 0.00 0.00 4.45
245 246 5.700722 TTATACTGCCGTACTGATACCTG 57.299 43.478 0.00 0.00 0.00 4.00
246 247 5.243283 CCTTTATACTGCCGTACTGATACCT 59.757 44.000 0.00 0.00 0.00 3.08
247 248 5.467705 CCTTTATACTGCCGTACTGATACC 58.532 45.833 0.00 0.00 0.00 2.73
248 249 4.922103 GCCTTTATACTGCCGTACTGATAC 59.078 45.833 0.00 0.00 0.00 2.24
249 250 4.585581 TGCCTTTATACTGCCGTACTGATA 59.414 41.667 0.00 0.00 0.00 2.15
250 251 3.386726 TGCCTTTATACTGCCGTACTGAT 59.613 43.478 0.00 0.00 0.00 2.90
251 252 2.761767 TGCCTTTATACTGCCGTACTGA 59.238 45.455 0.00 0.00 0.00 3.41
252 253 3.173668 TGCCTTTATACTGCCGTACTG 57.826 47.619 0.00 0.00 0.00 2.74
253 254 3.899052 TTGCCTTTATACTGCCGTACT 57.101 42.857 0.00 0.00 0.00 2.73
254 255 4.729746 GCTTTTGCCTTTATACTGCCGTAC 60.730 45.833 0.00 0.00 40.15 3.67
255 256 3.375922 GCTTTTGCCTTTATACTGCCGTA 59.624 43.478 0.00 0.00 40.15 4.02
256 257 2.163613 GCTTTTGCCTTTATACTGCCGT 59.836 45.455 0.00 0.00 40.15 5.68
257 258 2.791158 CGCTTTTGCCTTTATACTGCCG 60.791 50.000 0.00 0.00 43.93 5.69
258 259 2.163613 ACGCTTTTGCCTTTATACTGCC 59.836 45.455 0.00 0.00 43.93 4.85
259 260 3.487563 ACGCTTTTGCCTTTATACTGC 57.512 42.857 0.00 0.00 43.93 4.40
260 261 5.447279 CCTGTACGCTTTTGCCTTTATACTG 60.447 44.000 0.00 0.00 43.93 2.74
261 262 4.634443 CCTGTACGCTTTTGCCTTTATACT 59.366 41.667 0.00 0.00 43.93 2.12
262 263 4.729746 GCCTGTACGCTTTTGCCTTTATAC 60.730 45.833 0.00 0.00 43.93 1.47
263 264 3.375922 GCCTGTACGCTTTTGCCTTTATA 59.624 43.478 0.00 0.00 43.93 0.98
264 265 2.163613 GCCTGTACGCTTTTGCCTTTAT 59.836 45.455 0.00 0.00 43.93 1.40
265 266 1.538075 GCCTGTACGCTTTTGCCTTTA 59.462 47.619 0.00 0.00 43.93 1.85
266 267 0.313987 GCCTGTACGCTTTTGCCTTT 59.686 50.000 0.00 0.00 43.93 3.11
267 268 0.821711 TGCCTGTACGCTTTTGCCTT 60.822 50.000 0.00 0.00 43.93 4.35
268 269 1.228124 TGCCTGTACGCTTTTGCCT 60.228 52.632 0.00 0.00 43.93 4.75
269 270 1.081442 GTGCCTGTACGCTTTTGCC 60.081 57.895 0.00 0.00 43.93 4.52
270 271 0.110192 GAGTGCCTGTACGCTTTTGC 60.110 55.000 0.00 0.00 43.23 3.68
271 272 0.517316 GGAGTGCCTGTACGCTTTTG 59.483 55.000 0.00 0.00 0.00 2.44
272 273 0.605589 GGGAGTGCCTGTACGCTTTT 60.606 55.000 0.00 0.00 0.00 2.27
273 274 1.003718 GGGAGTGCCTGTACGCTTT 60.004 57.895 0.00 0.00 0.00 3.51
274 275 2.172483 CTGGGAGTGCCTGTACGCTT 62.172 60.000 1.06 0.00 0.00 4.68
275 276 2.603473 TGGGAGTGCCTGTACGCT 60.603 61.111 1.06 0.00 0.00 5.07
276 277 2.125512 CTGGGAGTGCCTGTACGC 60.126 66.667 1.06 0.00 0.00 4.42
277 278 1.215647 GACTGGGAGTGCCTGTACG 59.784 63.158 13.23 0.00 0.00 3.67
278 279 1.192146 TGGACTGGGAGTGCCTGTAC 61.192 60.000 15.11 15.11 35.52 2.90
279 280 0.472925 TTGGACTGGGAGTGCCTGTA 60.473 55.000 13.23 0.00 35.52 2.74
280 281 1.770110 TTGGACTGGGAGTGCCTGT 60.770 57.895 13.12 13.12 35.52 4.00
281 282 1.002868 CTTGGACTGGGAGTGCCTG 60.003 63.158 6.00 6.00 35.52 4.85
282 283 2.227036 CCTTGGACTGGGAGTGCCT 61.227 63.158 1.06 0.00 35.52 4.75
283 284 2.352805 CCTTGGACTGGGAGTGCC 59.647 66.667 0.00 0.00 35.52 5.01
289 290 1.915078 CTACTGCCCCTTGGACTGGG 61.915 65.000 0.00 0.00 45.22 4.45
290 291 0.909610 TCTACTGCCCCTTGGACTGG 60.910 60.000 0.00 0.00 0.00 4.00
291 292 0.539051 CTCTACTGCCCCTTGGACTG 59.461 60.000 0.00 0.00 0.00 3.51
292 293 0.117340 ACTCTACTGCCCCTTGGACT 59.883 55.000 0.00 0.00 0.00 3.85
293 294 1.757699 CTACTCTACTGCCCCTTGGAC 59.242 57.143 0.00 0.00 0.00 4.02
294 295 1.343075 CCTACTCTACTGCCCCTTGGA 60.343 57.143 0.00 0.00 0.00 3.53
295 296 1.123928 CCTACTCTACTGCCCCTTGG 58.876 60.000 0.00 0.00 0.00 3.61
296 297 1.482593 CACCTACTCTACTGCCCCTTG 59.517 57.143 0.00 0.00 0.00 3.61
297 298 1.078989 ACACCTACTCTACTGCCCCTT 59.921 52.381 0.00 0.00 0.00 3.95
298 299 0.711184 ACACCTACTCTACTGCCCCT 59.289 55.000 0.00 0.00 0.00 4.79
299 300 1.112950 GACACCTACTCTACTGCCCC 58.887 60.000 0.00 0.00 0.00 5.80
300 301 0.739561 CGACACCTACTCTACTGCCC 59.260 60.000 0.00 0.00 0.00 5.36
301 302 0.100861 GCGACACCTACTCTACTGCC 59.899 60.000 0.00 0.00 0.00 4.85
302 303 0.100861 GGCGACACCTACTCTACTGC 59.899 60.000 0.00 0.00 34.51 4.40
303 304 0.377554 CGGCGACACCTACTCTACTG 59.622 60.000 0.00 0.00 35.61 2.74
304 305 1.375098 GCGGCGACACCTACTCTACT 61.375 60.000 12.98 0.00 35.61 2.57
305 306 1.063811 GCGGCGACACCTACTCTAC 59.936 63.158 12.98 0.00 35.61 2.59
306 307 1.077930 AGCGGCGACACCTACTCTA 60.078 57.895 12.98 0.00 35.61 2.43
307 308 2.361357 AGCGGCGACACCTACTCT 60.361 61.111 12.98 0.00 35.61 3.24
308 309 2.202623 CAGCGGCGACACCTACTC 60.203 66.667 12.98 0.00 35.61 2.59
309 310 3.760035 CCAGCGGCGACACCTACT 61.760 66.667 12.98 0.00 35.61 2.57
320 321 0.870307 GTACGTGTATCAGCCAGCGG 60.870 60.000 0.00 0.00 0.00 5.52
321 322 1.200474 CGTACGTGTATCAGCCAGCG 61.200 60.000 7.22 0.00 0.00 5.18
322 323 0.179145 ACGTACGTGTATCAGCCAGC 60.179 55.000 22.14 0.00 0.00 4.85
323 324 1.823828 GACGTACGTGTATCAGCCAG 58.176 55.000 28.16 0.00 0.00 4.85
324 325 0.097499 CGACGTACGTGTATCAGCCA 59.903 55.000 28.16 0.00 37.22 4.75
325 326 0.590732 CCGACGTACGTGTATCAGCC 60.591 60.000 28.16 7.55 40.78 4.85
326 327 1.198608 GCCGACGTACGTGTATCAGC 61.199 60.000 28.16 11.44 40.78 4.26
327 328 0.922560 CGCCGACGTACGTGTATCAG 60.923 60.000 28.16 4.57 40.78 2.90
328 329 1.060779 CGCCGACGTACGTGTATCA 59.939 57.895 28.16 0.00 40.78 2.15
329 330 2.281664 GCGCCGACGTACGTGTATC 61.282 63.158 28.16 10.36 42.83 2.24
330 331 2.277501 GCGCCGACGTACGTGTAT 60.278 61.111 28.16 0.00 42.83 2.29
331 332 3.037992 ATGCGCCGACGTACGTGTA 62.038 57.895 28.16 11.30 42.83 2.90
332 333 4.409218 ATGCGCCGACGTACGTGT 62.409 61.111 28.16 0.55 42.83 4.49
333 334 3.897502 CATGCGCCGACGTACGTG 61.898 66.667 28.16 17.22 42.83 4.49
336 337 3.261951 ATGCATGCGCCGACGTAC 61.262 61.111 14.09 0.00 42.83 3.67
337 338 3.261216 CATGCATGCGCCGACGTA 61.261 61.111 14.93 0.00 42.83 3.57
347 348 1.050009 GAATGAATCGCGCATGCATG 58.950 50.000 22.70 22.70 42.97 4.06
348 349 0.949397 AGAATGAATCGCGCATGCAT 59.051 45.000 19.57 7.84 42.97 3.96
349 350 1.261354 GTAGAATGAATCGCGCATGCA 59.739 47.619 19.57 5.53 42.97 3.96
350 351 1.528586 AGTAGAATGAATCGCGCATGC 59.471 47.619 7.91 7.91 37.91 4.06
351 352 3.181536 GCTAGTAGAATGAATCGCGCATG 60.182 47.826 8.75 0.00 0.00 4.06
352 353 2.989840 GCTAGTAGAATGAATCGCGCAT 59.010 45.455 8.75 0.00 0.00 4.73
353 354 2.394708 GCTAGTAGAATGAATCGCGCA 58.605 47.619 8.75 0.00 0.00 6.09
354 355 1.383744 CGCTAGTAGAATGAATCGCGC 59.616 52.381 0.00 0.00 32.83 6.86
355 356 2.917363 TCGCTAGTAGAATGAATCGCG 58.083 47.619 0.00 0.00 40.58 5.87
356 357 7.513190 AATAATCGCTAGTAGAATGAATCGC 57.487 36.000 0.00 0.00 0.00 4.58
364 365 8.746530 CCTGGGTAATAATAATCGCTAGTAGAA 58.253 37.037 0.00 0.00 0.00 2.10
365 366 7.892241 ACCTGGGTAATAATAATCGCTAGTAGA 59.108 37.037 0.00 0.00 0.00 2.59
366 367 8.064336 ACCTGGGTAATAATAATCGCTAGTAG 57.936 38.462 0.00 0.00 0.00 2.57
367 368 7.148188 CGACCTGGGTAATAATAATCGCTAGTA 60.148 40.741 0.00 0.00 0.00 1.82
368 369 6.349944 CGACCTGGGTAATAATAATCGCTAGT 60.350 42.308 0.00 0.00 0.00 2.57
369 370 6.034591 CGACCTGGGTAATAATAATCGCTAG 58.965 44.000 0.00 0.00 0.00 3.42
370 371 5.105635 CCGACCTGGGTAATAATAATCGCTA 60.106 44.000 0.00 0.00 0.00 4.26
371 372 4.322499 CCGACCTGGGTAATAATAATCGCT 60.322 45.833 0.00 0.00 0.00 4.93
372 373 3.930848 CCGACCTGGGTAATAATAATCGC 59.069 47.826 0.00 0.00 0.00 4.58
373 374 3.930848 GCCGACCTGGGTAATAATAATCG 59.069 47.826 0.00 0.00 38.63 3.34
374 375 4.901868 TGCCGACCTGGGTAATAATAATC 58.098 43.478 0.00 0.00 38.63 1.75
375 376 4.986054 TGCCGACCTGGGTAATAATAAT 57.014 40.909 0.00 0.00 38.63 1.28
376 377 4.453751 GTTGCCGACCTGGGTAATAATAA 58.546 43.478 0.00 0.00 38.63 1.40
377 378 3.493002 CGTTGCCGACCTGGGTAATAATA 60.493 47.826 0.00 0.00 38.63 0.98
378 379 2.743838 CGTTGCCGACCTGGGTAATAAT 60.744 50.000 0.00 0.00 38.63 1.28
379 380 1.405797 CGTTGCCGACCTGGGTAATAA 60.406 52.381 0.00 0.00 38.63 1.40
380 381 0.176219 CGTTGCCGACCTGGGTAATA 59.824 55.000 0.00 0.00 38.63 0.98
381 382 1.078708 CGTTGCCGACCTGGGTAAT 60.079 57.895 0.00 0.00 38.63 1.89
382 383 2.344500 CGTTGCCGACCTGGGTAA 59.656 61.111 0.00 0.00 38.63 2.85
383 384 4.382320 GCGTTGCCGACCTGGGTA 62.382 66.667 0.00 0.00 38.63 3.69
386 387 3.726517 CAAGCGTTGCCGACCTGG 61.727 66.667 0.00 0.00 42.50 4.45
387 388 3.726517 CCAAGCGTTGCCGACCTG 61.727 66.667 0.00 0.00 35.63 4.00
390 391 3.723348 GACCCAAGCGTTGCCGAC 61.723 66.667 0.00 0.00 35.63 4.79
399 400 3.340953 TACGTACGCCGACCCAAGC 62.341 63.158 16.72 0.00 40.70 4.01
400 401 1.514873 GTACGTACGCCGACCCAAG 60.515 63.158 16.72 0.00 40.70 3.61
401 402 0.675208 TAGTACGTACGCCGACCCAA 60.675 55.000 19.49 0.00 40.70 4.12
402 403 1.078778 TAGTACGTACGCCGACCCA 60.079 57.895 19.49 0.00 40.70 4.51
403 404 1.352056 GTAGTACGTACGCCGACCC 59.648 63.158 19.49 1.59 40.70 4.46
404 405 0.247695 GTGTAGTACGTACGCCGACC 60.248 60.000 19.49 1.36 40.70 4.79
405 406 3.204811 GTGTAGTACGTACGCCGAC 57.795 57.895 19.49 15.67 40.70 4.79
424 425 1.298041 CAACCAACACAACGCCGAC 60.298 57.895 0.00 0.00 0.00 4.79
425 426 3.102985 CAACCAACACAACGCCGA 58.897 55.556 0.00 0.00 0.00 5.54
426 427 2.653766 GCAACCAACACAACGCCG 60.654 61.111 0.00 0.00 0.00 6.46
427 428 2.279186 GGCAACCAACACAACGCC 60.279 61.111 0.00 0.00 0.00 5.68
428 429 2.653766 CGGCAACCAACACAACGC 60.654 61.111 0.00 0.00 0.00 4.84
429 430 1.298041 GACGGCAACCAACACAACG 60.298 57.895 0.00 0.00 0.00 4.10
430 431 1.298041 CGACGGCAACCAACACAAC 60.298 57.895 0.00 0.00 0.00 3.32
431 432 2.473760 CCGACGGCAACCAACACAA 61.474 57.895 0.00 0.00 0.00 3.33
432 433 2.897846 CCGACGGCAACCAACACA 60.898 61.111 0.00 0.00 0.00 3.72
457 458 2.392181 TAAAACATCCGGCGGTGCG 61.392 57.895 27.32 17.34 0.00 5.34
486 487 3.107601 TGGGTGGATTCTGGAGTAAGAG 58.892 50.000 0.00 0.00 0.00 2.85
515 516 2.030562 CCTCCAAGCAACCGTCGT 59.969 61.111 0.00 0.00 0.00 4.34
517 518 2.032681 AGCCTCCAAGCAACCGTC 59.967 61.111 0.00 0.00 34.23 4.79
518 519 2.032681 GAGCCTCCAAGCAACCGT 59.967 61.111 0.00 0.00 34.23 4.83
519 520 2.747855 GGAGCCTCCAAGCAACCG 60.748 66.667 5.69 0.00 36.28 4.44
520 521 1.377856 GAGGAGCCTCCAAGCAACC 60.378 63.158 14.46 0.00 39.61 3.77
521 522 0.392327 GAGAGGAGCCTCCAAGCAAC 60.392 60.000 14.46 0.00 43.70 4.17
522 523 1.986413 GAGAGGAGCCTCCAAGCAA 59.014 57.895 14.46 0.00 43.70 3.91
548 555 4.631813 GCGGAATATTTATACTGGAGCAGG 59.368 45.833 0.00 0.00 35.51 4.85
597 605 0.478507 GAGGAGGAGGAGGAGGAGAG 59.521 65.000 0.00 0.00 0.00 3.20
610 618 3.535962 GCGCAGAGGAGGAGGAGG 61.536 72.222 0.30 0.00 0.00 4.30
611 619 2.441901 AGCGCAGAGGAGGAGGAG 60.442 66.667 11.47 0.00 0.00 3.69
613 621 3.073735 ACAGCGCAGAGGAGGAGG 61.074 66.667 11.47 0.00 0.00 4.30
615 623 1.758440 AAACACAGCGCAGAGGAGGA 61.758 55.000 11.47 0.00 0.00 3.71
621 629 1.333619 GGAAAGAAAACACAGCGCAGA 59.666 47.619 11.47 0.00 0.00 4.26
623 631 0.383949 GGGAAAGAAAACACAGCGCA 59.616 50.000 11.47 0.00 0.00 6.09
624 632 0.318699 GGGGAAAGAAAACACAGCGC 60.319 55.000 0.00 0.00 0.00 5.92
626 634 1.068588 GGTGGGGAAAGAAAACACAGC 59.931 52.381 0.00 0.00 33.91 4.40
627 635 2.623416 GAGGTGGGGAAAGAAAACACAG 59.377 50.000 0.00 0.00 33.91 3.66
685 703 2.122189 GAGGGATCAGGGGAGGGG 60.122 72.222 0.00 0.00 0.00 4.79
769 798 2.266055 GGGGCAAGACCAGACGAG 59.734 66.667 0.00 0.00 42.05 4.18
770 799 3.691342 CGGGGCAAGACCAGACGA 61.691 66.667 0.00 0.00 42.05 4.20
771 800 2.907897 GATCGGGGCAAGACCAGACG 62.908 65.000 0.00 0.00 42.05 4.18
772 801 1.153349 GATCGGGGCAAGACCAGAC 60.153 63.158 0.00 0.00 42.05 3.51
773 802 2.367202 GGATCGGGGCAAGACCAGA 61.367 63.158 0.00 0.00 42.05 3.86
801 830 1.172175 GGCAAGAGCAAGAAAGAGGG 58.828 55.000 0.00 0.00 44.61 4.30
915 946 1.519455 CGCTACCCTCGGCAAGAAG 60.519 63.158 0.00 0.00 0.00 2.85
918 949 4.451150 TGCGCTACCCTCGGCAAG 62.451 66.667 9.73 0.00 31.50 4.01
954 985 2.287788 ACCGCACAAGCAAAGAATCAAG 60.288 45.455 0.00 0.00 42.27 3.02
969 1000 4.212004 TGATACGTACTCTATGTACCGCAC 59.788 45.833 0.00 0.00 46.49 5.34
970 1001 4.379652 TGATACGTACTCTATGTACCGCA 58.620 43.478 0.00 0.00 46.49 5.69
971 1002 4.997905 TGATACGTACTCTATGTACCGC 57.002 45.455 0.00 0.00 46.49 5.68
972 1003 6.589139 TCTCATGATACGTACTCTATGTACCG 59.411 42.308 0.00 0.00 46.49 4.02
973 1004 7.902387 TCTCATGATACGTACTCTATGTACC 57.098 40.000 0.00 0.00 46.49 3.34
976 1007 8.726068 CATCTTCTCATGATACGTACTCTATGT 58.274 37.037 0.00 0.00 0.00 2.29
978 1009 9.679661 ATCATCTTCTCATGATACGTACTCTAT 57.320 33.333 0.00 0.00 40.99 1.98
979 1010 8.940952 CATCATCTTCTCATGATACGTACTCTA 58.059 37.037 0.00 0.00 40.86 2.43
980 1011 7.574779 GCATCATCTTCTCATGATACGTACTCT 60.575 40.741 0.00 0.00 40.86 3.24
981 1012 6.526325 GCATCATCTTCTCATGATACGTACTC 59.474 42.308 0.00 0.00 40.86 2.59
982 1013 6.385843 GCATCATCTTCTCATGATACGTACT 58.614 40.000 0.00 0.00 40.86 2.73
989 1026 2.067013 CGCGCATCATCTTCTCATGAT 58.933 47.619 8.75 0.00 43.14 2.45
1186 1229 0.693049 AACTTGACCTTGAGGCGGAT 59.307 50.000 0.00 0.00 39.32 4.18
1235 1278 4.168291 CGAAGGAGGCCTGGGAGC 62.168 72.222 12.00 0.00 32.13 4.70
1264 1307 7.308710 GCAATTGGTTGATTGATTGATTGGTTT 60.309 33.333 7.72 0.00 38.93 3.27
1267 1310 5.878116 AGCAATTGGTTGATTGATTGATTGG 59.122 36.000 3.82 0.00 38.93 3.16
1271 1314 5.179742 GCAAAGCAATTGGTTGATTGATTGA 59.820 36.000 22.64 0.00 42.67 2.57
1272 1315 5.387279 GCAAAGCAATTGGTTGATTGATTG 58.613 37.500 22.64 15.63 42.67 2.67
1273 1316 5.616488 GCAAAGCAATTGGTTGATTGATT 57.384 34.783 22.64 3.26 42.67 2.57
1299 1342 2.212900 AAAAATCCGGCGAGCAAGGC 62.213 55.000 9.30 0.00 0.00 4.35
1300 1343 0.456653 CAAAAATCCGGCGAGCAAGG 60.457 55.000 9.30 0.00 0.00 3.61
1302 1345 1.175983 ACCAAAAATCCGGCGAGCAA 61.176 50.000 9.30 0.00 0.00 3.91
1303 1346 1.175983 AACCAAAAATCCGGCGAGCA 61.176 50.000 9.30 0.00 0.00 4.26
1304 1347 0.038618 AAACCAAAAATCCGGCGAGC 60.039 50.000 9.30 0.00 0.00 5.03
1305 1348 1.668628 CCAAACCAAAAATCCGGCGAG 60.669 52.381 9.30 0.00 0.00 5.03
1306 1349 0.315568 CCAAACCAAAAATCCGGCGA 59.684 50.000 9.30 0.00 0.00 5.54
1307 1350 1.288419 GCCAAACCAAAAATCCGGCG 61.288 55.000 0.00 0.00 0.00 6.46
1308 1351 0.034756 AGCCAAACCAAAAATCCGGC 59.965 50.000 0.00 0.00 38.36 6.13
1309 1352 1.337728 GGAGCCAAACCAAAAATCCGG 60.338 52.381 0.00 0.00 0.00 5.14
1310 1353 1.618343 AGGAGCCAAACCAAAAATCCG 59.382 47.619 0.00 0.00 0.00 4.18
1311 1354 2.899900 AGAGGAGCCAAACCAAAAATCC 59.100 45.455 0.00 0.00 0.00 3.01
1313 1356 2.558359 CGAGAGGAGCCAAACCAAAAAT 59.442 45.455 0.00 0.00 0.00 1.82
1359 1402 2.625823 GCACCCACCACCATTCACG 61.626 63.158 0.00 0.00 0.00 4.35
1384 1429 3.111838 CTCCGACATCATCTTCTTCACG 58.888 50.000 0.00 0.00 0.00 4.35
1385 1430 4.377839 TCTCCGACATCATCTTCTTCAC 57.622 45.455 0.00 0.00 0.00 3.18
1402 1447 3.706373 TGCAGGCCGGTCTTCTCC 61.706 66.667 5.38 0.00 0.00 3.71
1414 1459 3.596066 CTGGTCCTCGTGGTGCAGG 62.596 68.421 2.99 0.00 34.23 4.85
1642 1687 2.653702 AGCACGAGCAGAGTGGTC 59.346 61.111 7.77 0.00 45.80 4.02
1645 1690 3.177920 GCGAGCACGAGCAGAGTG 61.178 66.667 8.01 2.44 45.49 3.51
1646 1691 4.767841 CGCGAGCACGAGCAGAGT 62.768 66.667 8.01 0.00 45.49 3.24
1658 1703 3.901797 AACAAGGGAAGGGCGCGAG 62.902 63.158 12.10 0.00 34.07 5.03
1659 1704 2.969300 AAAACAAGGGAAGGGCGCGA 62.969 55.000 12.10 0.00 34.07 5.87
1660 1705 2.082629 AAAAACAAGGGAAGGGCGCG 62.083 55.000 0.00 0.00 34.07 6.86
1661 1706 1.745890 AAAAACAAGGGAAGGGCGC 59.254 52.632 0.00 0.00 0.00 6.53
1676 1721 1.298488 GACGGCGGCGAAACAAAAA 60.298 52.632 38.93 0.00 0.00 1.94
1677 1722 2.328639 GACGGCGGCGAAACAAAA 59.671 55.556 38.93 0.00 0.00 2.44
1687 1732 4.939915 CTCGATCGACGACGGCGG 62.940 72.222 24.91 7.46 46.45 6.13
1688 1733 3.713615 AACTCGATCGACGACGGCG 62.714 63.158 19.07 19.07 46.45 6.46
1689 1734 2.099831 AACTCGATCGACGACGGC 59.900 61.111 15.15 0.00 46.45 5.68
1691 1736 1.582937 CCCAACTCGATCGACGACG 60.583 63.158 15.15 7.16 46.45 5.12
1692 1737 0.797249 CACCCAACTCGATCGACGAC 60.797 60.000 15.15 0.00 46.45 4.34
1701 1747 0.389817 TTCGATCAGCACCCAACTCG 60.390 55.000 0.00 0.00 0.00 4.18
1703 1749 2.489329 CAAATTCGATCAGCACCCAACT 59.511 45.455 0.00 0.00 0.00 3.16
1707 1753 0.740737 CCCAAATTCGATCAGCACCC 59.259 55.000 0.00 0.00 0.00 4.61
1915 1972 4.157120 AACGGAATCGGCGGGGAG 62.157 66.667 7.21 0.00 41.39 4.30
1959 2016 4.735132 TTCCGTTCAGCTCGCCCG 62.735 66.667 0.00 0.00 0.00 6.13
1960 2017 3.119096 GTTCCGTTCAGCTCGCCC 61.119 66.667 0.00 0.00 0.00 6.13
1961 2018 2.048127 AGTTCCGTTCAGCTCGCC 60.048 61.111 0.00 0.00 0.00 5.54
1962 2019 0.944311 TTCAGTTCCGTTCAGCTCGC 60.944 55.000 0.00 0.00 0.00 5.03
1963 2020 1.656095 GATTCAGTTCCGTTCAGCTCG 59.344 52.381 0.00 0.00 0.00 5.03
1971 2028 1.276421 CCACCAGAGATTCAGTTCCGT 59.724 52.381 0.00 0.00 0.00 4.69
1973 2030 2.704572 CACCACCAGAGATTCAGTTCC 58.295 52.381 0.00 0.00 0.00 3.62
1974 2031 2.079925 GCACCACCAGAGATTCAGTTC 58.920 52.381 0.00 0.00 0.00 3.01
1984 2041 2.061220 CTTCTCCTGCACCACCAGA 58.939 57.895 0.00 0.00 34.77 3.86
1985 2042 1.673665 GCTTCTCCTGCACCACCAG 60.674 63.158 0.00 0.00 0.00 4.00
2387 2500 3.952675 GCATGTACCATGCCGCCG 61.953 66.667 16.40 0.00 39.01 6.46
2406 2519 5.491982 GAGAAAGGAATCAAACTAGGCAGA 58.508 41.667 0.00 0.00 0.00 4.26
2415 2528 2.478894 GACGCACGAGAAAGGAATCAAA 59.521 45.455 0.00 0.00 0.00 2.69
2460 2573 1.804396 ATCGGATCGAGCAGAGCAGG 61.804 60.000 9.75 0.00 39.91 4.85
2510 2633 7.803659 CGAGAAAAAGGAAAGAATAAACAGACC 59.196 37.037 0.00 0.00 0.00 3.85
2541 2666 6.136155 AGAAAAATGGAGGTGGAAGAAGAAA 58.864 36.000 0.00 0.00 0.00 2.52
2543 2668 5.324832 AGAAAAATGGAGGTGGAAGAAGA 57.675 39.130 0.00 0.00 0.00 2.87
2544 2669 6.410942 AAAGAAAAATGGAGGTGGAAGAAG 57.589 37.500 0.00 0.00 0.00 2.85
2546 2671 6.836527 TGTAAAAGAAAAATGGAGGTGGAAGA 59.163 34.615 0.00 0.00 0.00 2.87
2547 2672 7.049799 TGTAAAAGAAAAATGGAGGTGGAAG 57.950 36.000 0.00 0.00 0.00 3.46
2552 2686 9.325198 GAACAAATGTAAAAGAAAAATGGAGGT 57.675 29.630 0.00 0.00 0.00 3.85
2555 2689 8.198109 TCGGAACAAATGTAAAAGAAAAATGGA 58.802 29.630 0.00 0.00 0.00 3.41
2556 2690 8.359060 TCGGAACAAATGTAAAAGAAAAATGG 57.641 30.769 0.00 0.00 0.00 3.16
2557 2691 9.030301 ACTCGGAACAAATGTAAAAGAAAAATG 57.970 29.630 0.00 0.00 0.00 2.32
2558 2692 9.030301 CACTCGGAACAAATGTAAAAGAAAAAT 57.970 29.630 0.00 0.00 0.00 1.82
2561 2695 7.090953 ACACTCGGAACAAATGTAAAAGAAA 57.909 32.000 0.00 0.00 0.00 2.52
2564 2698 7.581476 ACATACACTCGGAACAAATGTAAAAG 58.419 34.615 0.00 0.00 30.06 2.27
2565 2699 7.499321 ACATACACTCGGAACAAATGTAAAA 57.501 32.000 0.00 0.00 30.06 1.52
2569 2703 6.170506 ACATACATACACTCGGAACAAATGT 58.829 36.000 0.00 0.00 0.00 2.71
2570 2704 6.662414 ACATACATACACTCGGAACAAATG 57.338 37.500 0.00 0.00 0.00 2.32
2615 2750 1.318158 GCCAGGGCCTGTTCATCTTG 61.318 60.000 30.68 14.55 34.56 3.02
2668 2803 0.174845 TTATTCTCTGCACGGACGGG 59.825 55.000 0.00 0.00 0.00 5.28
2682 2827 2.469516 CCACCACCGGCGCTTATTC 61.470 63.158 7.64 0.00 0.00 1.75
2724 2869 5.590530 TTTCCATATATGTTGGTTGTGCC 57.409 39.130 11.73 0.00 35.64 5.01
2725 2870 6.863126 GCTATTTCCATATATGTTGGTTGTGC 59.137 38.462 11.73 3.29 35.64 4.57
2726 2871 7.939782 TGCTATTTCCATATATGTTGGTTGTG 58.060 34.615 11.73 0.00 35.64 3.33
2728 2873 8.579006 ACATGCTATTTCCATATATGTTGGTTG 58.421 33.333 11.73 0.00 35.64 3.77
2729 2874 8.710749 ACATGCTATTTCCATATATGTTGGTT 57.289 30.769 11.73 0.00 35.64 3.67
2730 2875 9.979897 ATACATGCTATTTCCATATATGTTGGT 57.020 29.630 11.73 0.00 35.64 3.67
2740 2885 9.743581 TGAATCACATATACATGCTATTTCCAT 57.256 29.630 0.00 0.00 35.39 3.41
2741 2886 9.743581 ATGAATCACATATACATGCTATTTCCA 57.256 29.630 0.00 0.00 37.46 3.53
2770 2915 8.735315 AGAGGAATCGATTGATGTAGTATGTAG 58.265 37.037 16.96 0.00 34.24 2.74
2771 2916 8.637196 AGAGGAATCGATTGATGTAGTATGTA 57.363 34.615 16.96 0.00 34.24 2.29
2772 2917 7.531857 AGAGGAATCGATTGATGTAGTATGT 57.468 36.000 16.96 0.00 34.24 2.29
2774 2919 9.467796 TCATAGAGGAATCGATTGATGTAGTAT 57.532 33.333 16.96 0.88 34.24 2.12
2775 2920 8.863872 TCATAGAGGAATCGATTGATGTAGTA 57.136 34.615 16.96 0.00 34.24 1.82
2776 2921 7.767250 TCATAGAGGAATCGATTGATGTAGT 57.233 36.000 16.96 0.00 34.24 2.73
2777 2922 9.085250 CAATCATAGAGGAATCGATTGATGTAG 57.915 37.037 16.96 0.24 43.55 2.74
2818 2973 1.619432 GGCAATGGGGGAATCAAGTCA 60.619 52.381 0.00 0.00 0.00 3.41
2819 2974 1.114627 GGCAATGGGGGAATCAAGTC 58.885 55.000 0.00 0.00 0.00 3.01
2820 2975 0.413037 TGGCAATGGGGGAATCAAGT 59.587 50.000 0.00 0.00 0.00 3.16
2821 2976 1.690352 GATGGCAATGGGGGAATCAAG 59.310 52.381 0.00 0.00 0.00 3.02
2822 2977 1.792115 GATGGCAATGGGGGAATCAA 58.208 50.000 0.00 0.00 0.00 2.57
2823 2978 0.467844 CGATGGCAATGGGGGAATCA 60.468 55.000 0.00 0.00 0.00 2.57
2824 2979 1.809567 GCGATGGCAATGGGGGAATC 61.810 60.000 0.00 0.00 39.62 2.52
2825 2980 1.833934 GCGATGGCAATGGGGGAAT 60.834 57.895 0.00 0.00 39.62 3.01
2836 2991 1.723870 GATCACCACTTGCGATGGC 59.276 57.895 0.00 0.00 41.31 4.40
2859 3016 2.280389 CCCGATGATCACCCAGCG 60.280 66.667 0.00 0.00 44.48 5.18
2903 3063 4.394439 TCAATCAATCCATGGTGCATTG 57.606 40.909 12.58 14.30 0.00 2.82
2928 3089 2.111043 CACGTCAGCAACCCCAGT 59.889 61.111 0.00 0.00 0.00 4.00
2929 3090 3.357079 GCACGTCAGCAACCCCAG 61.357 66.667 0.00 0.00 0.00 4.45
2938 3099 1.145759 ACACGACACAAGCACGTCAG 61.146 55.000 0.00 0.00 38.18 3.51
2939 3100 1.153726 ACACGACACAAGCACGTCA 60.154 52.632 0.00 0.00 38.18 4.35
2941 3102 2.171079 CCACACGACACAAGCACGT 61.171 57.895 0.00 0.00 40.87 4.49
2942 3103 2.625906 CCACACGACACAAGCACG 59.374 61.111 0.00 0.00 0.00 5.34
2978 3148 2.758089 GCGCTCTCATGGCCAACAG 61.758 63.158 10.96 9.01 0.00 3.16
3033 3204 1.289109 GAACCACCACACCGTCGATG 61.289 60.000 0.00 0.00 0.00 3.84
3034 3205 1.005394 GAACCACCACACCGTCGAT 60.005 57.895 0.00 0.00 0.00 3.59
3035 3206 2.418356 GAACCACCACACCGTCGA 59.582 61.111 0.00 0.00 0.00 4.20
3036 3207 3.033764 CGAACCACCACACCGTCG 61.034 66.667 0.00 0.00 0.00 5.12
3037 3208 2.107546 ACGAACCACCACACCGTC 59.892 61.111 0.00 0.00 0.00 4.79
3039 3210 3.645975 GCACGAACCACCACACCG 61.646 66.667 0.00 0.00 0.00 4.94
3080 3288 0.244994 ACAAGAGAGTACAGCGGCAG 59.755 55.000 1.45 0.00 0.00 4.85
3081 3289 0.038251 CACAAGAGAGTACAGCGGCA 60.038 55.000 1.45 0.00 0.00 5.69
3084 3292 1.702886 CCACACAAGAGAGTACAGCG 58.297 55.000 0.00 0.00 0.00 5.18
3085 3293 1.001406 AGCCACACAAGAGAGTACAGC 59.999 52.381 0.00 0.00 0.00 4.40
3088 3296 3.759618 ACTAGAGCCACACAAGAGAGTAC 59.240 47.826 0.00 0.00 0.00 2.73
3089 3297 3.759086 CACTAGAGCCACACAAGAGAGTA 59.241 47.826 0.00 0.00 0.00 2.59
3090 3298 2.560542 CACTAGAGCCACACAAGAGAGT 59.439 50.000 0.00 0.00 0.00 3.24
3093 3301 1.674221 GCCACTAGAGCCACACAAGAG 60.674 57.143 0.00 0.00 0.00 2.85
3095 3303 0.035317 TGCCACTAGAGCCACACAAG 59.965 55.000 0.00 0.00 0.00 3.16
3096 3304 0.035317 CTGCCACTAGAGCCACACAA 59.965 55.000 0.00 0.00 0.00 3.33
3097 3305 0.831711 TCTGCCACTAGAGCCACACA 60.832 55.000 0.00 0.00 0.00 3.72
3109 3317 1.308069 ACGCAACCATCATCTGCCAC 61.308 55.000 0.00 0.00 32.27 5.01
3113 3321 1.733389 GCCAAACGCAACCATCATCTG 60.733 52.381 0.00 0.00 37.47 2.90
3133 3351 1.831736 ACCTTCCACTAATCAGACCGG 59.168 52.381 0.00 0.00 0.00 5.28
3134 3352 3.522553 GAACCTTCCACTAATCAGACCG 58.477 50.000 0.00 0.00 0.00 4.79
3196 3419 0.326264 AGCTGGCCAGTTCAGGTTAG 59.674 55.000 32.81 5.74 39.59 2.34
3249 3478 3.564511 CCGCAGTACAAATTTGGAACAG 58.435 45.455 21.74 15.84 42.39 3.16
3270 3499 0.807667 CTGACATCGTGGGCAGTAGC 60.808 60.000 4.12 0.00 41.10 3.58
3271 3500 0.532573 ACTGACATCGTGGGCAGTAG 59.467 55.000 14.44 0.00 36.06 2.57
3272 3501 0.530744 GACTGACATCGTGGGCAGTA 59.469 55.000 15.69 0.00 37.29 2.74
3273 3502 1.293498 GACTGACATCGTGGGCAGT 59.707 57.895 15.66 15.66 38.95 4.40
3274 3503 1.448540 GGACTGACATCGTGGGCAG 60.449 63.158 9.83 9.83 32.54 4.85
3275 3504 2.171209 CTGGACTGACATCGTGGGCA 62.171 60.000 0.00 0.00 0.00 5.36
3276 3505 1.448540 CTGGACTGACATCGTGGGC 60.449 63.158 0.00 0.00 0.00 5.36
3277 3506 1.448540 GCTGGACTGACATCGTGGG 60.449 63.158 0.00 0.00 0.00 4.61
3290 3519 3.369381 GCTAATCAAGCGAGCTGGA 57.631 52.632 4.46 4.46 42.53 3.86
3311 3540 0.600782 TTTGTCCTCGTGGCGTAACC 60.601 55.000 0.00 0.00 39.84 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.