Multiple sequence alignment - TraesCS5A01G312400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G312400 chr5A 100.000 2880 0 0 1 2880 523880750 523877871 0.000000e+00 5319
1 TraesCS5A01G312400 chr5A 96.831 284 9 0 2597 2880 523869427 523869144 2.600000e-130 475
2 TraesCS5A01G312400 chr5A 95.376 173 8 0 1 173 523885374 523885202 2.830000e-70 276
3 TraesCS5A01G312400 chr5A 82.716 162 28 0 1170 1331 80155793 80155632 8.320000e-31 145
4 TraesCS5A01G312400 chr5D 92.728 2159 86 23 33 2156 412148863 412146741 0.000000e+00 3051
5 TraesCS5A01G312400 chr5D 89.247 372 30 3 2229 2596 412146727 412146362 9.410000e-125 457
6 TraesCS5A01G312400 chr5D 82.716 162 28 0 1170 1331 87173735 87173574 8.320000e-31 145
7 TraesCS5A01G312400 chr5B 91.401 1570 69 21 610 2156 495474045 495472519 0.000000e+00 2091
8 TraesCS5A01G312400 chr5B 93.465 505 25 3 93 597 495474594 495474098 0.000000e+00 743
9 TraesCS5A01G312400 chr5B 83.505 388 34 16 2229 2596 495472505 495472128 4.600000e-88 335
10 TraesCS5A01G312400 chr3D 84.810 1027 110 27 754 1770 322682227 322683217 0.000000e+00 990
11 TraesCS5A01G312400 chr6A 85.100 651 50 16 754 1392 420552984 420552369 3.150000e-174 621
12 TraesCS5A01G312400 chr6A 97.183 284 8 0 2597 2880 472903584 472903867 5.580000e-132 481
13 TraesCS5A01G312400 chr6A 81.313 198 25 6 1583 1780 420541059 420540874 1.790000e-32 150
14 TraesCS5A01G312400 chr2B 85.127 632 50 22 754 1382 769581248 769581838 8.830000e-170 606
15 TraesCS5A01G312400 chr2B 82.123 179 31 1 1164 1342 211614104 211614281 4.970000e-33 152
16 TraesCS5A01G312400 chr1B 86.328 512 58 6 1272 1780 489694751 489695253 5.430000e-152 547
17 TraesCS5A01G312400 chr1B 96.831 284 9 0 2597 2880 631391372 631391655 2.600000e-130 475
18 TraesCS5A01G312400 chr1B 80.620 258 32 6 754 1008 489693240 489693482 1.760000e-42 183
19 TraesCS5A01G312400 chr1A 83.935 554 59 12 1158 1708 585231637 585231111 1.190000e-138 503
20 TraesCS5A01G312400 chr1A 96.479 284 10 0 2597 2880 142429953 142429670 1.210000e-128 470
21 TraesCS5A01G312400 chr1A 96.479 284 10 0 2597 2880 281684227 281683944 1.210000e-128 470
22 TraesCS5A01G312400 chr1A 96.479 284 10 0 2597 2880 359972497 359972214 1.210000e-128 470
23 TraesCS5A01G312400 chr1A 83.784 370 36 9 754 1122 585231989 585231643 2.140000e-86 329
24 TraesCS5A01G312400 chr3A 97.183 284 8 0 2597 2880 11274392 11274675 5.580000e-132 481
25 TraesCS5A01G312400 chr3A 96.831 284 9 0 2597 2880 8155556 8155273 2.600000e-130 475
26 TraesCS5A01G312400 chr2A 97.183 284 8 0 2597 2880 413758911 413758628 5.580000e-132 481
27 TraesCS5A01G312400 chr7B 84.783 322 24 12 754 1075 50603039 50602743 1.680000e-77 300
28 TraesCS5A01G312400 chr7B 81.188 303 26 16 1086 1387 50601029 50600757 6.250000e-52 215
29 TraesCS5A01G312400 chr7D 85.926 270 35 1 1512 1778 292242948 292242679 4.700000e-73 285
30 TraesCS5A01G312400 chr7D 91.549 142 11 1 1158 1299 292243079 292242939 8.140000e-46 195
31 TraesCS5A01G312400 chr7D 83.408 223 21 7 899 1120 292243286 292243079 2.930000e-45 193
32 TraesCS5A01G312400 chr7D 88.281 128 8 2 778 905 292249462 292249342 2.310000e-31 147


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G312400 chr5A 523877871 523880750 2879 True 5319.000000 5319 100.0000 1 2880 1 chr5A.!!$R3 2879
1 TraesCS5A01G312400 chr5D 412146362 412148863 2501 True 1754.000000 3051 90.9875 33 2596 2 chr5D.!!$R2 2563
2 TraesCS5A01G312400 chr5B 495472128 495474594 2466 True 1056.333333 2091 89.4570 93 2596 3 chr5B.!!$R1 2503
3 TraesCS5A01G312400 chr3D 322682227 322683217 990 False 990.000000 990 84.8100 754 1770 1 chr3D.!!$F1 1016
4 TraesCS5A01G312400 chr6A 420552369 420552984 615 True 621.000000 621 85.1000 754 1392 1 chr6A.!!$R2 638
5 TraesCS5A01G312400 chr2B 769581248 769581838 590 False 606.000000 606 85.1270 754 1382 1 chr2B.!!$F2 628
6 TraesCS5A01G312400 chr1B 489693240 489695253 2013 False 365.000000 547 83.4740 754 1780 2 chr1B.!!$F2 1026
7 TraesCS5A01G312400 chr1A 585231111 585231989 878 True 416.000000 503 83.8595 754 1708 2 chr1A.!!$R4 954
8 TraesCS5A01G312400 chr7B 50600757 50603039 2282 True 257.500000 300 82.9855 754 1387 2 chr7B.!!$R1 633
9 TraesCS5A01G312400 chr7D 292242679 292243286 607 True 224.333333 285 86.9610 899 1778 3 chr7D.!!$R2 879

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
958 1042 0.036858 GAGTGGAGGCCTGTGTTCTC 60.037 60.0 12.0 7.13 0.0 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2705 5636 0.030101 TTTTCGGGTCTGCAAAAGCG 59.97 50.0 0.0 0.0 0.0 4.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.374689 TGGAAGCCATGTAACTTAACCA 57.625 40.909 0.00 0.00 0.00 3.67
22 23 4.730966 TGGAAGCCATGTAACTTAACCAA 58.269 39.130 0.00 0.00 0.00 3.67
23 24 4.521256 TGGAAGCCATGTAACTTAACCAAC 59.479 41.667 0.00 0.00 0.00 3.77
24 25 4.082408 GGAAGCCATGTAACTTAACCAACC 60.082 45.833 0.00 0.00 0.00 3.77
25 26 3.078837 AGCCATGTAACTTAACCAACCG 58.921 45.455 0.00 0.00 0.00 4.44
26 27 2.815503 GCCATGTAACTTAACCAACCGT 59.184 45.455 0.00 0.00 0.00 4.83
27 28 3.253921 GCCATGTAACTTAACCAACCGTT 59.746 43.478 0.00 0.00 38.57 4.44
28 29 4.614306 GCCATGTAACTTAACCAACCGTTC 60.614 45.833 0.00 0.00 35.79 3.95
29 30 4.758165 CCATGTAACTTAACCAACCGTTCT 59.242 41.667 0.00 0.00 35.79 3.01
30 31 5.933463 CCATGTAACTTAACCAACCGTTCTA 59.067 40.000 0.00 0.00 35.79 2.10
31 32 6.091713 CCATGTAACTTAACCAACCGTTCTAG 59.908 42.308 0.00 0.00 35.79 2.43
39 40 1.136500 CCAACCGTTCTAGTAGGGCTC 59.864 57.143 7.91 0.00 0.00 4.70
57 58 1.959985 CTCATGGATAGAGCCGACTGT 59.040 52.381 0.00 0.00 0.00 3.55
58 59 1.957177 TCATGGATAGAGCCGACTGTC 59.043 52.381 0.00 0.00 0.00 3.51
59 60 1.959985 CATGGATAGAGCCGACTGTCT 59.040 52.381 6.21 0.00 0.00 3.41
60 61 1.393603 TGGATAGAGCCGACTGTCTG 58.606 55.000 6.21 0.05 0.00 3.51
77 78 3.053455 GTCTGACAGAGTCGAAAACCAG 58.947 50.000 5.10 0.00 34.95 4.00
90 91 4.398988 TCGAAAACCAGGGAAATGATGATG 59.601 41.667 0.00 0.00 0.00 3.07
150 155 5.070981 CCCATTGAGTATACTGTGACCATCT 59.929 44.000 10.90 0.00 0.00 2.90
272 277 1.816074 TCTGGGCACGGAATGTTTAC 58.184 50.000 0.00 0.00 0.00 2.01
363 368 0.179094 TCAATCGGCGTACATCACCC 60.179 55.000 6.85 0.00 0.00 4.61
375 380 1.621814 ACATCACCCGTATATTCCCCG 59.378 52.381 0.00 0.00 0.00 5.73
405 410 8.446273 CCAATGATCTCACCACGATTATTATTC 58.554 37.037 0.00 0.00 29.37 1.75
408 413 5.196341 TCTCACCACGATTATTATTCGCT 57.804 39.130 7.66 0.00 40.19 4.93
409 414 6.321848 TCTCACCACGATTATTATTCGCTA 57.678 37.500 7.66 0.00 40.19 4.26
418 423 6.034256 ACGATTATTATTCGCTATTACGGTGC 59.966 38.462 7.66 0.00 40.19 5.01
449 454 4.443913 TCTGAAAATGATGTCCGTCGTA 57.556 40.909 0.00 0.00 0.00 3.43
450 455 4.171005 TCTGAAAATGATGTCCGTCGTAC 58.829 43.478 0.00 0.00 0.00 3.67
451 456 2.918600 TGAAAATGATGTCCGTCGTACG 59.081 45.455 9.53 9.53 42.11 3.67
452 457 2.642139 AAATGATGTCCGTCGTACGT 57.358 45.000 16.05 0.00 40.58 3.57
522 527 1.296056 ACGTAGGACAATTGTGGCGC 61.296 55.000 17.58 0.00 31.03 6.53
587 592 2.036387 TCAAGGTTTCAGTCCTCGTGA 58.964 47.619 0.00 0.00 33.76 4.35
666 716 5.571277 GGTAAGTGACTGCGTTAAACAAAA 58.429 37.500 0.00 0.00 0.00 2.44
776 827 6.498304 CCTAATGATTGCATGGTGTTAACTC 58.502 40.000 7.22 2.89 34.26 3.01
798 849 4.628333 TCTTAAACTAATCAAGAACCGGCG 59.372 41.667 0.00 0.00 0.00 6.46
948 1019 0.322008 CTCTTTGGTGGAGTGGAGGC 60.322 60.000 0.00 0.00 0.00 4.70
955 1039 1.770110 TGGAGTGGAGGCCTGTGTT 60.770 57.895 12.00 0.00 0.00 3.32
956 1040 1.003233 GGAGTGGAGGCCTGTGTTC 60.003 63.158 12.00 2.22 0.00 3.18
958 1042 0.036858 GAGTGGAGGCCTGTGTTCTC 60.037 60.000 12.00 7.13 0.00 2.87
960 1044 0.036858 GTGGAGGCCTGTGTTCTCTC 60.037 60.000 12.00 0.00 0.00 3.20
961 1045 0.178921 TGGAGGCCTGTGTTCTCTCT 60.179 55.000 12.00 0.00 0.00 3.10
962 1046 0.248843 GGAGGCCTGTGTTCTCTCTG 59.751 60.000 12.00 0.00 0.00 3.35
963 1047 0.972883 GAGGCCTGTGTTCTCTCTGT 59.027 55.000 12.00 0.00 0.00 3.41
964 1048 0.683973 AGGCCTGTGTTCTCTCTGTG 59.316 55.000 3.11 0.00 0.00 3.66
965 1049 0.394565 GGCCTGTGTTCTCTCTGTGT 59.605 55.000 0.00 0.00 0.00 3.72
966 1050 1.506493 GCCTGTGTTCTCTCTGTGTG 58.494 55.000 0.00 0.00 0.00 3.82
967 1051 1.506493 CCTGTGTTCTCTCTGTGTGC 58.494 55.000 0.00 0.00 0.00 4.57
1002 1094 0.882927 TGGAGTGGCGAAACTTTCCG 60.883 55.000 0.00 0.00 0.00 4.30
1024 1409 3.372822 GGTGTATGTGTGAACGTATTGGG 59.627 47.826 0.00 0.00 0.00 4.12
1054 1439 6.187727 TGGCTAGGTGCTTAAGCTAATTAT 57.812 37.500 26.90 10.40 38.38 1.28
1055 1440 7.311092 TGGCTAGGTGCTTAAGCTAATTATA 57.689 36.000 26.90 10.91 38.38 0.98
1708 4589 1.273455 CGTTCAAGGTGTCGTCGTCC 61.273 60.000 0.00 0.00 0.00 4.79
1781 4662 0.877071 TTTCTAGCGAGGAACGTCGT 59.123 50.000 16.00 0.00 42.17 4.34
1855 4752 5.471456 AGCAGTGAAATGAAGTCCTACTTTG 59.529 40.000 0.00 0.00 38.80 2.77
1861 4758 6.096141 TGAAATGAAGTCCTACTTTGCAACAA 59.904 34.615 0.00 0.00 38.80 2.83
1862 4759 4.893424 TGAAGTCCTACTTTGCAACAAC 57.107 40.909 0.00 0.00 38.80 3.32
1868 4765 6.639563 AGTCCTACTTTGCAACAACAAAAAT 58.360 32.000 0.00 0.00 38.96 1.82
1869 4766 7.102993 AGTCCTACTTTGCAACAACAAAAATT 58.897 30.769 0.00 0.00 38.96 1.82
1870 4767 7.606073 AGTCCTACTTTGCAACAACAAAAATTT 59.394 29.630 0.00 0.00 38.96 1.82
1871 4768 7.691877 GTCCTACTTTGCAACAACAAAAATTTG 59.308 33.333 0.00 4.40 38.96 2.32
1889 4793 0.703488 TGTTCCCATGGAAGATGCCA 59.297 50.000 15.22 0.00 42.88 4.92
1895 4799 2.568509 CCCATGGAAGATGCCAAGTTTT 59.431 45.455 15.22 0.00 42.16 2.43
1934 4838 4.352595 TGAAGTCCTGAATAGGGTTTTGGA 59.647 41.667 0.00 0.00 44.70 3.53
1972 4876 3.467803 GAATCGACCCTGAATTTCGGAT 58.532 45.455 6.81 0.00 33.50 4.18
1999 4903 2.803956 GGAACGAAAACCATTCGAGTGA 59.196 45.455 16.46 0.00 43.97 3.41
2050 4954 8.379902 ACAAAATTTGACTGAATTTCGTTGAAC 58.620 29.630 13.19 0.00 38.04 3.18
2128 5032 8.413229 ACATATATCAGGTTAAATGTGCCAAAC 58.587 33.333 0.00 0.00 0.00 2.93
2156 5062 6.997655 TGGCAACATAACAATACAATTCCAA 58.002 32.000 0.00 0.00 46.17 3.53
2157 5063 7.445121 TGGCAACATAACAATACAATTCCAAA 58.555 30.769 0.00 0.00 46.17 3.28
2158 5064 7.386299 TGGCAACATAACAATACAATTCCAAAC 59.614 33.333 0.00 0.00 46.17 2.93
2159 5065 7.386299 GGCAACATAACAATACAATTCCAAACA 59.614 33.333 0.00 0.00 0.00 2.83
2160 5066 8.220434 GCAACATAACAATACAATTCCAAACAC 58.780 33.333 0.00 0.00 0.00 3.32
2161 5067 8.423973 CAACATAACAATACAATTCCAAACACG 58.576 33.333 0.00 0.00 0.00 4.49
2162 5068 7.877003 ACATAACAATACAATTCCAAACACGA 58.123 30.769 0.00 0.00 0.00 4.35
2163 5069 8.020819 ACATAACAATACAATTCCAAACACGAG 58.979 33.333 0.00 0.00 0.00 4.18
2164 5070 6.627395 AACAATACAATTCCAAACACGAGA 57.373 33.333 0.00 0.00 0.00 4.04
2166 5072 6.435428 ACAATACAATTCCAAACACGAGAAC 58.565 36.000 0.00 0.00 0.00 3.01
2167 5073 6.262273 ACAATACAATTCCAAACACGAGAACT 59.738 34.615 0.00 0.00 0.00 3.01
2169 5075 5.668558 ACAATTCCAAACACGAGAACTAC 57.331 39.130 0.00 0.00 0.00 2.73
2170 5076 5.365619 ACAATTCCAAACACGAGAACTACT 58.634 37.500 0.00 0.00 0.00 2.57
2171 5077 5.820947 ACAATTCCAAACACGAGAACTACTT 59.179 36.000 0.00 0.00 0.00 2.24
2172 5078 5.924475 ATTCCAAACACGAGAACTACTTG 57.076 39.130 0.00 0.00 36.17 3.16
2173 5079 4.395959 TCCAAACACGAGAACTACTTGT 57.604 40.909 0.00 0.00 43.37 3.16
2174 5080 5.518848 TCCAAACACGAGAACTACTTGTA 57.481 39.130 0.00 0.00 40.90 2.41
2175 5081 5.526115 TCCAAACACGAGAACTACTTGTAG 58.474 41.667 6.28 6.28 40.90 2.74
2176 5082 4.684703 CCAAACACGAGAACTACTTGTAGG 59.315 45.833 11.82 0.00 40.90 3.18
2177 5083 4.516365 AACACGAGAACTACTTGTAGGG 57.484 45.455 11.82 0.08 40.90 3.53
2178 5084 2.824341 ACACGAGAACTACTTGTAGGGG 59.176 50.000 11.82 0.00 40.90 4.79
2179 5085 1.823610 ACGAGAACTACTTGTAGGGGC 59.176 52.381 11.82 1.93 41.04 5.80
2180 5086 1.822990 CGAGAACTACTTGTAGGGGCA 59.177 52.381 11.82 0.00 0.00 5.36
2181 5087 2.159226 CGAGAACTACTTGTAGGGGCAG 60.159 54.545 11.82 0.00 0.00 4.85
2182 5088 2.168728 GAGAACTACTTGTAGGGGCAGG 59.831 54.545 11.82 0.00 0.00 4.85
2183 5089 1.907255 GAACTACTTGTAGGGGCAGGT 59.093 52.381 11.82 0.00 33.27 4.00
2184 5090 1.569653 ACTACTTGTAGGGGCAGGTC 58.430 55.000 11.82 0.00 31.15 3.85
2185 5091 0.831307 CTACTTGTAGGGGCAGGTCC 59.169 60.000 0.11 0.00 31.15 4.46
2186 5092 0.974010 TACTTGTAGGGGCAGGTCCG 60.974 60.000 0.00 0.00 34.94 4.79
2187 5093 1.987855 CTTGTAGGGGCAGGTCCGA 60.988 63.158 0.00 0.00 34.94 4.55
2188 5094 2.240162 CTTGTAGGGGCAGGTCCGAC 62.240 65.000 0.00 0.00 34.94 4.79
2189 5095 3.468140 GTAGGGGCAGGTCCGACC 61.468 72.222 9.81 9.81 38.99 4.79
2190 5096 4.791069 TAGGGGCAGGTCCGACCC 62.791 72.222 14.32 14.94 39.75 4.46
2193 5099 3.728373 GGGCAGGTCCGACCCATT 61.728 66.667 14.32 0.00 43.64 3.16
2194 5100 2.372074 GGGCAGGTCCGACCCATTA 61.372 63.158 14.32 0.00 43.64 1.90
2195 5101 1.153229 GGCAGGTCCGACCCATTAC 60.153 63.158 14.32 0.00 39.75 1.89
2196 5102 1.520787 GCAGGTCCGACCCATTACG 60.521 63.158 14.32 0.00 39.75 3.18
2197 5103 1.895238 CAGGTCCGACCCATTACGT 59.105 57.895 14.32 0.00 39.75 3.57
2198 5104 0.248289 CAGGTCCGACCCATTACGTT 59.752 55.000 14.32 0.00 39.75 3.99
2199 5105 0.533951 AGGTCCGACCCATTACGTTC 59.466 55.000 14.32 0.00 39.75 3.95
2200 5106 0.460811 GGTCCGACCCATTACGTTCC 60.461 60.000 6.25 0.00 30.04 3.62
2201 5107 0.803380 GTCCGACCCATTACGTTCCG 60.803 60.000 0.00 0.00 0.00 4.30
2202 5108 1.519898 CCGACCCATTACGTTCCGG 60.520 63.158 0.00 0.00 0.00 5.14
2203 5109 1.216178 CGACCCATTACGTTCCGGT 59.784 57.895 0.00 0.00 0.00 5.28
2204 5110 0.390209 CGACCCATTACGTTCCGGTT 60.390 55.000 0.00 0.00 0.00 4.44
2205 5111 1.362768 GACCCATTACGTTCCGGTTC 58.637 55.000 0.00 0.00 0.00 3.62
2206 5112 0.390209 ACCCATTACGTTCCGGTTCG 60.390 55.000 16.41 16.41 0.00 3.95
2207 5113 0.390209 CCCATTACGTTCCGGTTCGT 60.390 55.000 23.76 23.76 42.82 3.85
2208 5114 1.431496 CCATTACGTTCCGGTTCGTT 58.569 50.000 24.91 10.86 40.70 3.85
2209 5115 1.391144 CCATTACGTTCCGGTTCGTTC 59.609 52.381 24.91 2.18 40.70 3.95
2210 5116 1.391144 CATTACGTTCCGGTTCGTTCC 59.609 52.381 24.91 0.00 40.70 3.62
2211 5117 0.673437 TTACGTTCCGGTTCGTTCCT 59.327 50.000 24.91 8.79 40.70 3.36
2212 5118 0.240945 TACGTTCCGGTTCGTTCCTC 59.759 55.000 24.91 0.00 40.70 3.71
2213 5119 1.007038 CGTTCCGGTTCGTTCCTCA 60.007 57.895 0.00 0.00 0.00 3.86
2214 5120 0.598158 CGTTCCGGTTCGTTCCTCAA 60.598 55.000 0.00 0.00 0.00 3.02
2215 5121 1.585297 GTTCCGGTTCGTTCCTCAAA 58.415 50.000 0.00 0.00 0.00 2.69
2216 5122 1.262417 GTTCCGGTTCGTTCCTCAAAC 59.738 52.381 0.00 0.00 34.31 2.93
2217 5123 0.464870 TCCGGTTCGTTCCTCAAACA 59.535 50.000 0.00 0.00 37.77 2.83
2218 5124 0.865769 CCGGTTCGTTCCTCAAACAG 59.134 55.000 0.00 0.00 37.77 3.16
2219 5125 1.539496 CCGGTTCGTTCCTCAAACAGA 60.539 52.381 0.00 0.00 37.77 3.41
2220 5126 1.792949 CGGTTCGTTCCTCAAACAGAG 59.207 52.381 0.00 0.00 44.31 3.35
2221 5127 1.531578 GGTTCGTTCCTCAAACAGAGC 59.468 52.381 0.00 0.00 43.31 4.09
2222 5128 2.210116 GTTCGTTCCTCAAACAGAGCA 58.790 47.619 0.00 0.00 43.31 4.26
2223 5129 1.865865 TCGTTCCTCAAACAGAGCAC 58.134 50.000 0.00 0.00 43.31 4.40
2224 5130 1.138069 TCGTTCCTCAAACAGAGCACA 59.862 47.619 0.00 0.00 43.31 4.57
2225 5131 1.261619 CGTTCCTCAAACAGAGCACAC 59.738 52.381 0.00 0.00 43.31 3.82
2226 5132 1.604278 GTTCCTCAAACAGAGCACACC 59.396 52.381 0.00 0.00 43.31 4.16
2227 5133 0.108585 TCCTCAAACAGAGCACACCC 59.891 55.000 0.00 0.00 43.31 4.61
2231 5137 3.070018 CTCAAACAGAGCACACCCTAAG 58.930 50.000 0.00 0.00 37.59 2.18
2238 5144 3.093057 AGAGCACACCCTAAGAGTACAG 58.907 50.000 0.00 0.00 0.00 2.74
2259 5165 7.306205 ACAGTTTTGAACCAAAATCAACATG 57.694 32.000 7.93 0.00 43.66 3.21
2267 5173 3.244181 ACCAAAATCAACATGGTTCAGCC 60.244 43.478 0.00 0.00 44.92 4.85
2270 5176 1.742761 ATCAACATGGTTCAGCCTCG 58.257 50.000 0.00 0.00 38.35 4.63
2290 5196 5.181235 TCGACGTAACATTTTTCACGATC 57.819 39.130 0.00 0.00 37.80 3.69
2345 5251 8.363755 CGAAGTAAACGTTACATCAAAGTCTAG 58.636 37.037 0.00 0.00 0.00 2.43
2346 5252 7.578169 AGTAAACGTTACATCAAAGTCTAGC 57.422 36.000 0.00 0.00 0.00 3.42
2365 5271 1.247419 CGTCAGCAGTCCTCAGTCCT 61.247 60.000 0.00 0.00 0.00 3.85
2368 5274 2.563179 GTCAGCAGTCCTCAGTCCTAAA 59.437 50.000 0.00 0.00 0.00 1.85
2383 5289 7.159372 TCAGTCCTAAAAGTCCAACAATCTAC 58.841 38.462 0.00 0.00 0.00 2.59
2433 5357 1.135139 CTACATCGACACAGGGGTCAG 59.865 57.143 2.22 0.00 37.66 3.51
2445 5369 0.604780 GGGGTCAGCATCCATCATCG 60.605 60.000 0.00 0.00 0.00 3.84
2475 5399 1.508632 CACCACAGTAGGTTCCAACG 58.491 55.000 0.00 0.00 40.77 4.10
2485 5413 4.715297 AGTAGGTTCCAACGACCAAGATAT 59.285 41.667 0.00 0.00 39.71 1.63
2506 5437 1.076841 TCTTTTGCCATCATCACCCCA 59.923 47.619 0.00 0.00 0.00 4.96
2539 5470 7.222224 AGAGAGTAACAACTCAAGTTAACAACG 59.778 37.037 8.61 0.00 39.12 4.10
2588 5519 8.947055 ACTAAATATGGGTCAAAATGAAATGC 57.053 30.769 0.00 0.00 0.00 3.56
2596 5527 6.267471 TGGGTCAAAATGAAATGCTACTTTCT 59.733 34.615 7.96 0.00 36.34 2.52
2597 5528 6.587608 GGGTCAAAATGAAATGCTACTTTCTG 59.412 38.462 7.96 0.79 36.34 3.02
2598 5529 7.147976 GGTCAAAATGAAATGCTACTTTCTGT 58.852 34.615 7.96 0.00 36.34 3.41
2599 5530 7.653311 GGTCAAAATGAAATGCTACTTTCTGTT 59.347 33.333 7.96 2.59 36.34 3.16
2600 5531 8.482429 GTCAAAATGAAATGCTACTTTCTGTTG 58.518 33.333 7.96 8.62 36.34 3.33
2601 5532 8.412456 TCAAAATGAAATGCTACTTTCTGTTGA 58.588 29.630 7.96 10.03 36.34 3.18
2602 5533 8.482429 CAAAATGAAATGCTACTTTCTGTTGAC 58.518 33.333 7.96 0.00 36.34 3.18
2603 5534 6.882610 ATGAAATGCTACTTTCTGTTGACA 57.117 33.333 7.96 0.00 36.34 3.58
2604 5535 6.060028 TGAAATGCTACTTTCTGTTGACAC 57.940 37.500 7.96 0.00 36.34 3.67
2605 5536 5.588246 TGAAATGCTACTTTCTGTTGACACA 59.412 36.000 7.96 0.00 36.34 3.72
2606 5537 5.424121 AATGCTACTTTCTGTTGACACAC 57.576 39.130 0.00 0.00 0.00 3.82
2607 5538 2.863740 TGCTACTTTCTGTTGACACACG 59.136 45.455 0.00 0.00 0.00 4.49
2608 5539 3.120792 GCTACTTTCTGTTGACACACGA 58.879 45.455 0.00 0.00 0.00 4.35
2609 5540 3.554324 GCTACTTTCTGTTGACACACGAA 59.446 43.478 0.00 0.00 0.00 3.85
2610 5541 4.550255 GCTACTTTCTGTTGACACACGAAC 60.550 45.833 0.00 0.00 0.00 3.95
2611 5542 3.331150 ACTTTCTGTTGACACACGAACA 58.669 40.909 0.00 0.00 0.00 3.18
2612 5543 3.124636 ACTTTCTGTTGACACACGAACAC 59.875 43.478 0.00 0.00 0.00 3.32
2613 5544 1.273688 TCTGTTGACACACGAACACG 58.726 50.000 0.00 0.00 0.00 4.49
2614 5545 0.996462 CTGTTGACACACGAACACGT 59.004 50.000 0.00 0.00 41.02 4.49
2615 5546 0.993532 TGTTGACACACGAACACGTC 59.006 50.000 0.00 0.00 38.21 4.34
2616 5547 0.993532 GTTGACACACGAACACGTCA 59.006 50.000 0.00 0.00 38.21 4.35
2617 5548 0.993532 TTGACACACGAACACGTCAC 59.006 50.000 0.00 0.00 38.07 3.67
2618 5549 1.135114 TGACACACGAACACGTCACG 61.135 55.000 0.00 0.00 38.21 4.35
2619 5550 1.135699 GACACACGAACACGTCACGT 61.136 55.000 0.00 0.00 42.36 4.49
2629 5560 2.417978 ACGTCACGTGTACCCTTGA 58.582 52.632 16.51 0.00 39.18 3.02
2630 5561 0.031178 ACGTCACGTGTACCCTTGAC 59.969 55.000 16.51 5.11 39.18 3.18
2631 5562 2.805277 GTCACGTGTACCCTTGACG 58.195 57.895 16.51 0.53 39.03 4.35
2632 5563 1.007038 TCACGTGTACCCTTGACGC 60.007 57.895 16.51 0.00 36.56 5.19
2633 5564 2.025418 CACGTGTACCCTTGACGCC 61.025 63.158 7.58 0.00 36.56 5.68
2634 5565 2.807895 CGTGTACCCTTGACGCCG 60.808 66.667 0.00 0.00 0.00 6.46
2635 5566 2.433664 GTGTACCCTTGACGCCGG 60.434 66.667 0.00 0.00 0.00 6.13
2636 5567 3.697747 TGTACCCTTGACGCCGGG 61.698 66.667 2.18 0.00 46.26 5.73
2637 5568 4.462280 GTACCCTTGACGCCGGGG 62.462 72.222 18.33 18.33 45.07 5.73
2642 5573 4.096003 CTTGACGCCGGGGGTGAT 62.096 66.667 22.51 0.35 36.58 3.06
2643 5574 4.402528 TTGACGCCGGGGGTGATG 62.403 66.667 22.51 0.00 36.58 3.07
2650 5581 4.854924 CGGGGGTGATGCATCGCA 62.855 66.667 34.39 12.90 44.86 5.10
2651 5582 2.440065 GGGGGTGATGCATCGCAA 60.440 61.111 34.39 11.55 43.62 4.85
2652 5583 2.774799 GGGGGTGATGCATCGCAAC 61.775 63.158 34.39 26.76 43.62 4.17
2653 5584 1.750399 GGGGTGATGCATCGCAACT 60.750 57.895 34.39 0.00 43.62 3.16
2654 5585 1.718757 GGGGTGATGCATCGCAACTC 61.719 60.000 34.39 21.42 43.62 3.01
2655 5586 1.026182 GGGTGATGCATCGCAACTCA 61.026 55.000 34.39 10.98 43.62 3.41
2656 5587 0.097674 GGTGATGCATCGCAACTCAC 59.902 55.000 34.39 20.99 43.55 3.51
2657 5588 0.247419 GTGATGCATCGCAACTCACG 60.247 55.000 30.53 0.00 43.62 4.35
2658 5589 0.670239 TGATGCATCGCAACTCACGT 60.670 50.000 21.34 0.00 43.62 4.49
2659 5590 0.025513 GATGCATCGCAACTCACGTC 59.974 55.000 11.68 0.00 43.62 4.34
2660 5591 1.686566 ATGCATCGCAACTCACGTCG 61.687 55.000 0.00 0.00 43.62 5.12
2661 5592 2.086426 GCATCGCAACTCACGTCGA 61.086 57.895 0.00 0.00 35.34 4.20
2662 5593 1.614227 GCATCGCAACTCACGTCGAA 61.614 55.000 0.00 0.00 34.50 3.71
2663 5594 0.363512 CATCGCAACTCACGTCGAAG 59.636 55.000 0.00 0.00 34.50 3.79
2664 5595 0.732880 ATCGCAACTCACGTCGAAGG 60.733 55.000 0.00 0.00 34.50 3.46
2665 5596 1.371267 CGCAACTCACGTCGAAGGA 60.371 57.895 0.00 0.00 0.00 3.36
2666 5597 1.337817 CGCAACTCACGTCGAAGGAG 61.338 60.000 0.00 12.68 34.85 3.69
2667 5598 0.039437 GCAACTCACGTCGAAGGAGA 60.039 55.000 18.38 8.98 33.00 3.71
2668 5599 1.687628 CAACTCACGTCGAAGGAGAC 58.312 55.000 18.38 0.00 37.76 3.36
2669 5600 0.597072 AACTCACGTCGAAGGAGACC 59.403 55.000 18.38 0.00 37.85 3.85
2670 5601 1.242665 ACTCACGTCGAAGGAGACCC 61.243 60.000 18.38 0.00 37.85 4.46
2671 5602 2.178521 CACGTCGAAGGAGACCCG 59.821 66.667 0.00 0.00 37.85 5.28
2672 5603 2.033141 ACGTCGAAGGAGACCCGA 59.967 61.111 0.00 0.00 37.85 5.14
2673 5604 2.331132 ACGTCGAAGGAGACCCGAC 61.331 63.158 0.00 0.00 46.67 4.79
2674 5605 2.883621 GTCGAAGGAGACCCGACC 59.116 66.667 0.00 0.00 45.39 4.79
2675 5606 2.749044 TCGAAGGAGACCCGACCG 60.749 66.667 0.00 0.00 37.58 4.79
2676 5607 2.749044 CGAAGGAGACCCGACCGA 60.749 66.667 0.00 0.00 37.58 4.69
2677 5608 2.883621 GAAGGAGACCCGACCGAC 59.116 66.667 0.00 0.00 37.58 4.79
2678 5609 1.975407 GAAGGAGACCCGACCGACA 60.975 63.158 0.00 0.00 37.58 4.35
2679 5610 1.935327 GAAGGAGACCCGACCGACAG 61.935 65.000 0.00 0.00 37.58 3.51
2680 5611 4.131088 GGAGACCCGACCGACAGC 62.131 72.222 0.00 0.00 0.00 4.40
2681 5612 4.477975 GAGACCCGACCGACAGCG 62.478 72.222 0.00 0.00 37.24 5.18
2686 5617 4.246206 CCGACCGACAGCGCGATA 62.246 66.667 12.10 0.00 35.83 2.92
2687 5618 3.017314 CGACCGACAGCGCGATAC 61.017 66.667 12.10 0.00 35.83 2.24
2700 5631 3.598678 CGATACGCAAGACAGTCGA 57.401 52.632 0.00 0.00 43.62 4.20
2701 5632 1.181001 CGATACGCAAGACAGTCGAC 58.819 55.000 7.70 7.70 43.62 4.20
2702 5633 1.181001 GATACGCAAGACAGTCGACG 58.819 55.000 10.46 7.86 43.62 5.12
2703 5634 0.179171 ATACGCAAGACAGTCGACGG 60.179 55.000 14.42 14.42 43.62 4.79
2704 5635 2.191354 TACGCAAGACAGTCGACGGG 62.191 60.000 19.84 13.94 43.62 5.28
2705 5636 3.112709 GCAAGACAGTCGACGGGC 61.113 66.667 19.84 17.29 0.00 6.13
2706 5637 2.805353 CAAGACAGTCGACGGGCG 60.805 66.667 19.84 0.00 42.69 6.13
2707 5638 4.719369 AAGACAGTCGACGGGCGC 62.719 66.667 19.84 0.00 40.61 6.53
2709 5640 4.719369 GACAGTCGACGGGCGCTT 62.719 66.667 19.84 0.00 40.61 4.68
2710 5641 4.295119 ACAGTCGACGGGCGCTTT 62.295 61.111 19.84 0.00 40.61 3.51
2711 5642 3.041940 CAGTCGACGGGCGCTTTT 61.042 61.111 10.46 0.00 40.61 2.27
2712 5643 3.041940 AGTCGACGGGCGCTTTTG 61.042 61.111 10.46 0.00 40.61 2.44
2713 5644 4.736631 GTCGACGGGCGCTTTTGC 62.737 66.667 7.64 0.00 40.61 3.68
2724 5655 3.957383 GCTTTTGCAGACCCGAAAA 57.043 47.368 0.00 0.00 46.58 2.29
2725 5656 1.487482 GCTTTTGCAGACCCGAAAAC 58.513 50.000 0.00 0.00 46.58 2.43
2726 5657 1.868109 GCTTTTGCAGACCCGAAAACC 60.868 52.381 0.00 0.00 46.58 3.27
2727 5658 0.747852 TTTTGCAGACCCGAAAACCC 59.252 50.000 0.00 0.00 0.00 4.11
2728 5659 1.110518 TTTGCAGACCCGAAAACCCC 61.111 55.000 0.00 0.00 0.00 4.95
2729 5660 2.114411 GCAGACCCGAAAACCCCA 59.886 61.111 0.00 0.00 0.00 4.96
2730 5661 2.265904 GCAGACCCGAAAACCCCAC 61.266 63.158 0.00 0.00 0.00 4.61
2731 5662 1.149627 CAGACCCGAAAACCCCACA 59.850 57.895 0.00 0.00 0.00 4.17
2732 5663 1.149854 AGACCCGAAAACCCCACAC 59.850 57.895 0.00 0.00 0.00 3.82
2733 5664 1.900016 GACCCGAAAACCCCACACC 60.900 63.158 0.00 0.00 0.00 4.16
2734 5665 2.599281 CCCGAAAACCCCACACCC 60.599 66.667 0.00 0.00 0.00 4.61
2735 5666 2.599281 CCGAAAACCCCACACCCC 60.599 66.667 0.00 0.00 0.00 4.95
2736 5667 2.599281 CGAAAACCCCACACCCCC 60.599 66.667 0.00 0.00 0.00 5.40
2737 5668 2.599281 GAAAACCCCACACCCCCG 60.599 66.667 0.00 0.00 0.00 5.73
2738 5669 4.227583 AAAACCCCACACCCCCGG 62.228 66.667 0.00 0.00 0.00 5.73
2755 5686 4.393778 GGAGGGACCCCGTCAGGA 62.394 72.222 7.00 0.00 39.85 3.86
2756 5687 2.284405 GAGGGACCCCGTCAGGAA 60.284 66.667 7.00 0.00 41.02 3.36
2757 5688 2.284699 AGGGACCCCGTCAGGAAG 60.285 66.667 7.00 0.00 41.02 3.46
2758 5689 2.606826 GGGACCCCGTCAGGAAGT 60.607 66.667 0.00 0.00 41.02 3.01
2759 5690 2.663196 GGACCCCGTCAGGAAGTG 59.337 66.667 0.00 0.00 41.02 3.16
2760 5691 2.047179 GACCCCGTCAGGAAGTGC 60.047 66.667 0.00 0.00 41.02 4.40
2761 5692 3.934391 GACCCCGTCAGGAAGTGCG 62.934 68.421 0.00 0.00 41.02 5.34
2762 5693 4.760047 CCCCGTCAGGAAGTGCGG 62.760 72.222 0.00 0.00 42.26 5.69
2768 5699 4.451150 CAGGAAGTGCGGCGGCTA 62.451 66.667 17.76 1.09 40.82 3.93
2769 5700 3.470888 AGGAAGTGCGGCGGCTAT 61.471 61.111 17.76 2.89 40.82 2.97
2770 5701 3.272334 GGAAGTGCGGCGGCTATG 61.272 66.667 17.76 0.00 40.82 2.23
2771 5702 3.272334 GAAGTGCGGCGGCTATGG 61.272 66.667 17.76 0.00 40.82 2.74
2772 5703 4.856801 AAGTGCGGCGGCTATGGG 62.857 66.667 17.76 0.00 40.82 4.00
2778 5709 4.937431 GGCGGCTATGGGCTGTCC 62.937 72.222 0.00 0.00 45.48 4.02
2780 5711 3.870955 CGGCTATGGGCTGTCCTA 58.129 61.111 0.00 0.00 42.08 2.94
2781 5712 1.668294 CGGCTATGGGCTGTCCTAG 59.332 63.158 0.00 0.28 42.08 3.02
2782 5713 1.821061 CGGCTATGGGCTGTCCTAGG 61.821 65.000 0.82 0.82 42.08 3.02
2783 5714 0.764752 GGCTATGGGCTGTCCTAGGT 60.765 60.000 9.08 0.00 41.46 3.08
2784 5715 1.132500 GCTATGGGCTGTCCTAGGTT 58.868 55.000 9.08 0.00 38.06 3.50
2785 5716 1.202698 GCTATGGGCTGTCCTAGGTTG 60.203 57.143 9.08 1.43 38.06 3.77
2786 5717 2.398588 CTATGGGCTGTCCTAGGTTGA 58.601 52.381 9.08 0.00 36.20 3.18
2787 5718 1.898863 ATGGGCTGTCCTAGGTTGAT 58.101 50.000 9.08 0.00 36.20 2.57
2788 5719 1.668826 TGGGCTGTCCTAGGTTGATT 58.331 50.000 9.08 0.00 36.20 2.57
2789 5720 1.559682 TGGGCTGTCCTAGGTTGATTC 59.440 52.381 9.08 0.00 36.20 2.52
2790 5721 1.473434 GGGCTGTCCTAGGTTGATTCG 60.473 57.143 9.08 0.00 0.00 3.34
2791 5722 1.291132 GCTGTCCTAGGTTGATTCGC 58.709 55.000 9.08 0.00 0.00 4.70
2792 5723 1.134670 GCTGTCCTAGGTTGATTCGCT 60.135 52.381 9.08 0.00 0.00 4.93
2793 5724 2.815478 CTGTCCTAGGTTGATTCGCTC 58.185 52.381 9.08 0.00 0.00 5.03
2794 5725 1.134367 TGTCCTAGGTTGATTCGCTCG 59.866 52.381 9.08 0.00 0.00 5.03
2795 5726 0.102481 TCCTAGGTTGATTCGCTCGC 59.898 55.000 9.08 0.00 0.00 5.03
2796 5727 0.876342 CCTAGGTTGATTCGCTCGCC 60.876 60.000 0.00 0.00 0.00 5.54
2797 5728 0.876342 CTAGGTTGATTCGCTCGCCC 60.876 60.000 0.00 0.00 0.00 6.13
2798 5729 2.306255 TAGGTTGATTCGCTCGCCCC 62.306 60.000 0.00 0.00 0.00 5.80
2799 5730 2.125106 GTTGATTCGCTCGCCCCT 60.125 61.111 0.00 0.00 0.00 4.79
2800 5731 1.143183 GTTGATTCGCTCGCCCCTA 59.857 57.895 0.00 0.00 0.00 3.53
2801 5732 0.876342 GTTGATTCGCTCGCCCCTAG 60.876 60.000 0.00 0.00 0.00 3.02
2802 5733 1.040893 TTGATTCGCTCGCCCCTAGA 61.041 55.000 0.00 0.00 0.00 2.43
2803 5734 1.287503 GATTCGCTCGCCCCTAGAG 59.712 63.158 0.00 0.00 38.68 2.43
2808 5739 3.291383 CTCGCCCCTAGAGCCTCG 61.291 72.222 0.00 0.00 0.00 4.63
2809 5740 4.896829 TCGCCCCTAGAGCCTCGG 62.897 72.222 0.00 0.00 0.00 4.63
2811 5742 4.862823 GCCCCTAGAGCCTCGGGT 62.863 72.222 5.24 0.00 35.01 5.28
2812 5743 2.041819 CCCCTAGAGCCTCGGGTT 60.042 66.667 4.25 0.00 35.01 4.11
2813 5744 1.689582 CCCCTAGAGCCTCGGGTTT 60.690 63.158 4.25 0.00 35.01 3.27
2814 5745 1.687297 CCCCTAGAGCCTCGGGTTTC 61.687 65.000 4.25 0.00 35.01 2.78
2815 5746 1.437986 CCTAGAGCCTCGGGTTTCG 59.562 63.158 0.00 0.00 40.90 3.46
2816 5747 1.227002 CTAGAGCCTCGGGTTTCGC 60.227 63.158 0.00 0.00 39.05 4.70
2817 5748 1.945354 CTAGAGCCTCGGGTTTCGCA 61.945 60.000 0.00 0.00 39.05 5.10
2818 5749 1.945354 TAGAGCCTCGGGTTTCGCAG 61.945 60.000 0.00 0.00 39.05 5.18
2821 5752 2.815647 CCTCGGGTTTCGCAGCTC 60.816 66.667 0.00 0.00 39.05 4.09
2822 5753 2.262915 CTCGGGTTTCGCAGCTCT 59.737 61.111 0.00 0.00 39.05 4.09
2823 5754 1.807573 CTCGGGTTTCGCAGCTCTC 60.808 63.158 0.00 0.00 39.05 3.20
2824 5755 2.048222 CGGGTTTCGCAGCTCTCA 60.048 61.111 0.00 0.00 0.00 3.27
2825 5756 1.667830 CGGGTTTCGCAGCTCTCAA 60.668 57.895 0.00 0.00 0.00 3.02
2826 5757 1.227999 CGGGTTTCGCAGCTCTCAAA 61.228 55.000 0.00 0.00 0.00 2.69
2827 5758 0.238553 GGGTTTCGCAGCTCTCAAAC 59.761 55.000 0.00 0.00 0.00 2.93
2828 5759 0.944386 GGTTTCGCAGCTCTCAAACA 59.056 50.000 11.26 0.00 31.52 2.83
2829 5760 1.334149 GGTTTCGCAGCTCTCAAACAC 60.334 52.381 11.26 1.01 31.52 3.32
2830 5761 0.581529 TTTCGCAGCTCTCAAACACG 59.418 50.000 0.00 0.00 0.00 4.49
2831 5762 0.249280 TTCGCAGCTCTCAAACACGA 60.249 50.000 0.00 0.00 0.00 4.35
2832 5763 0.249280 TCGCAGCTCTCAAACACGAA 60.249 50.000 0.00 0.00 0.00 3.85
2833 5764 0.162507 CGCAGCTCTCAAACACGAAG 59.837 55.000 0.00 0.00 0.00 3.79
2834 5765 1.502231 GCAGCTCTCAAACACGAAGA 58.498 50.000 0.00 0.00 0.00 2.87
2835 5766 1.867233 GCAGCTCTCAAACACGAAGAA 59.133 47.619 0.00 0.00 0.00 2.52
2836 5767 2.348966 GCAGCTCTCAAACACGAAGAAC 60.349 50.000 0.00 0.00 0.00 3.01
2837 5768 2.866156 CAGCTCTCAAACACGAAGAACA 59.134 45.455 0.00 0.00 0.00 3.18
2838 5769 3.060003 CAGCTCTCAAACACGAAGAACAG 60.060 47.826 0.00 0.00 0.00 3.16
2839 5770 2.348966 GCTCTCAAACACGAAGAACAGC 60.349 50.000 0.00 0.00 0.00 4.40
2840 5771 1.858458 TCTCAAACACGAAGAACAGCG 59.142 47.619 0.00 0.00 0.00 5.18
2841 5772 1.858458 CTCAAACACGAAGAACAGCGA 59.142 47.619 0.00 0.00 0.00 4.93
2842 5773 2.272678 TCAAACACGAAGAACAGCGAA 58.727 42.857 0.00 0.00 0.00 4.70
2843 5774 2.284150 TCAAACACGAAGAACAGCGAAG 59.716 45.455 0.00 0.00 0.00 3.79
2844 5775 2.218953 AACACGAAGAACAGCGAAGA 57.781 45.000 0.00 0.00 0.00 2.87
2845 5776 2.218953 ACACGAAGAACAGCGAAGAA 57.781 45.000 0.00 0.00 0.00 2.52
2846 5777 1.859080 ACACGAAGAACAGCGAAGAAC 59.141 47.619 0.00 0.00 0.00 3.01
2847 5778 1.129326 ACGAAGAACAGCGAAGAACG 58.871 50.000 0.00 0.00 45.66 3.95
2848 5779 1.268896 ACGAAGAACAGCGAAGAACGA 60.269 47.619 0.00 0.00 45.77 3.85
2849 5780 1.383744 CGAAGAACAGCGAAGAACGAG 59.616 52.381 0.00 0.00 45.77 4.18
2850 5781 2.662700 GAAGAACAGCGAAGAACGAGA 58.337 47.619 0.00 0.00 45.77 4.04
2851 5782 3.246619 GAAGAACAGCGAAGAACGAGAT 58.753 45.455 0.00 0.00 45.77 2.75
2852 5783 4.413087 GAAGAACAGCGAAGAACGAGATA 58.587 43.478 0.00 0.00 45.77 1.98
2853 5784 4.022464 AGAACAGCGAAGAACGAGATAG 57.978 45.455 0.00 0.00 45.77 2.08
2854 5785 3.690139 AGAACAGCGAAGAACGAGATAGA 59.310 43.478 0.00 0.00 45.77 1.98
2855 5786 4.156190 AGAACAGCGAAGAACGAGATAGAA 59.844 41.667 0.00 0.00 45.77 2.10
2856 5787 4.436242 ACAGCGAAGAACGAGATAGAAA 57.564 40.909 0.00 0.00 45.77 2.52
2857 5788 4.806330 ACAGCGAAGAACGAGATAGAAAA 58.194 39.130 0.00 0.00 45.77 2.29
2858 5789 4.621886 ACAGCGAAGAACGAGATAGAAAAC 59.378 41.667 0.00 0.00 45.77 2.43
2859 5790 4.031878 CAGCGAAGAACGAGATAGAAAACC 59.968 45.833 0.00 0.00 45.77 3.27
2860 5791 3.000971 GCGAAGAACGAGATAGAAAACCG 60.001 47.826 0.00 0.00 45.77 4.44
2861 5792 3.546670 CGAAGAACGAGATAGAAAACCGG 59.453 47.826 0.00 0.00 45.77 5.28
2862 5793 4.492611 GAAGAACGAGATAGAAAACCGGT 58.507 43.478 0.00 0.00 0.00 5.28
2863 5794 3.846360 AGAACGAGATAGAAAACCGGTG 58.154 45.455 8.52 0.00 0.00 4.94
2864 5795 2.667473 ACGAGATAGAAAACCGGTGG 57.333 50.000 8.52 0.00 0.00 4.61
2865 5796 2.173519 ACGAGATAGAAAACCGGTGGA 58.826 47.619 8.52 0.00 0.00 4.02
2866 5797 2.165845 ACGAGATAGAAAACCGGTGGAG 59.834 50.000 8.52 0.00 0.00 3.86
2867 5798 2.426024 CGAGATAGAAAACCGGTGGAGA 59.574 50.000 8.52 0.00 0.00 3.71
2868 5799 3.489398 CGAGATAGAAAACCGGTGGAGAG 60.489 52.174 8.52 0.00 0.00 3.20
2869 5800 3.700038 GAGATAGAAAACCGGTGGAGAGA 59.300 47.826 8.52 0.00 0.00 3.10
2870 5801 4.290942 AGATAGAAAACCGGTGGAGAGAT 58.709 43.478 8.52 0.00 0.00 2.75
2871 5802 5.455872 AGATAGAAAACCGGTGGAGAGATA 58.544 41.667 8.52 0.00 0.00 1.98
2872 5803 5.897824 AGATAGAAAACCGGTGGAGAGATAA 59.102 40.000 8.52 0.00 0.00 1.75
2873 5804 4.903045 AGAAAACCGGTGGAGAGATAAA 57.097 40.909 8.52 0.00 0.00 1.40
2874 5805 5.237236 AGAAAACCGGTGGAGAGATAAAA 57.763 39.130 8.52 0.00 0.00 1.52
2875 5806 5.001874 AGAAAACCGGTGGAGAGATAAAAC 58.998 41.667 8.52 0.00 0.00 2.43
2876 5807 2.667473 ACCGGTGGAGAGATAAAACG 57.333 50.000 6.12 0.00 0.00 3.60
2877 5808 1.897802 ACCGGTGGAGAGATAAAACGT 59.102 47.619 6.12 0.00 0.00 3.99
2878 5809 3.091545 ACCGGTGGAGAGATAAAACGTA 58.908 45.455 6.12 0.00 0.00 3.57
2879 5810 3.129988 ACCGGTGGAGAGATAAAACGTAG 59.870 47.826 6.12 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.374689 TGGTTAAGTTACATGGCTTCCA 57.625 40.909 0.00 1.12 38.19 3.53
1 2 4.082408 GGTTGGTTAAGTTACATGGCTTCC 60.082 45.833 0.00 0.00 0.00 3.46
2 3 4.379082 CGGTTGGTTAAGTTACATGGCTTC 60.379 45.833 0.00 0.00 0.00 3.86
3 4 3.504520 CGGTTGGTTAAGTTACATGGCTT 59.495 43.478 0.00 1.20 0.00 4.35
4 5 3.078837 CGGTTGGTTAAGTTACATGGCT 58.921 45.455 0.00 0.00 0.00 4.75
5 6 2.815503 ACGGTTGGTTAAGTTACATGGC 59.184 45.455 0.00 0.00 0.00 4.40
6 7 4.758165 AGAACGGTTGGTTAAGTTACATGG 59.242 41.667 0.00 0.00 39.50 3.66
7 8 5.934935 AGAACGGTTGGTTAAGTTACATG 57.065 39.130 0.00 0.00 39.50 3.21
8 9 6.762333 ACTAGAACGGTTGGTTAAGTTACAT 58.238 36.000 0.00 0.00 39.50 2.29
9 10 6.160576 ACTAGAACGGTTGGTTAAGTTACA 57.839 37.500 0.00 0.00 39.50 2.41
10 11 6.808704 CCTACTAGAACGGTTGGTTAAGTTAC 59.191 42.308 0.00 0.00 39.50 2.50
11 12 6.071391 CCCTACTAGAACGGTTGGTTAAGTTA 60.071 42.308 0.00 0.00 39.50 2.24
12 13 5.279657 CCCTACTAGAACGGTTGGTTAAGTT 60.280 44.000 0.00 0.00 39.50 2.66
13 14 4.221482 CCCTACTAGAACGGTTGGTTAAGT 59.779 45.833 0.00 0.00 39.50 2.24
14 15 4.752146 CCCTACTAGAACGGTTGGTTAAG 58.248 47.826 0.00 0.00 39.50 1.85
15 16 3.055891 GCCCTACTAGAACGGTTGGTTAA 60.056 47.826 0.00 0.00 39.50 2.01
16 17 2.497273 GCCCTACTAGAACGGTTGGTTA 59.503 50.000 0.00 0.00 39.50 2.85
17 18 1.277273 GCCCTACTAGAACGGTTGGTT 59.723 52.381 0.00 0.00 42.96 3.67
18 19 0.900421 GCCCTACTAGAACGGTTGGT 59.100 55.000 0.00 0.00 0.00 3.67
19 20 1.136500 GAGCCCTACTAGAACGGTTGG 59.864 57.143 0.00 0.00 0.00 3.77
20 21 1.822990 TGAGCCCTACTAGAACGGTTG 59.177 52.381 0.00 0.00 0.00 3.77
21 22 2.226962 TGAGCCCTACTAGAACGGTT 57.773 50.000 0.00 0.00 0.00 4.44
22 23 2.032620 CATGAGCCCTACTAGAACGGT 58.967 52.381 0.00 0.00 0.00 4.83
23 24 1.341531 CCATGAGCCCTACTAGAACGG 59.658 57.143 0.00 0.00 0.00 4.44
24 25 2.307768 TCCATGAGCCCTACTAGAACG 58.692 52.381 0.00 0.00 0.00 3.95
25 26 5.326069 TCTATCCATGAGCCCTACTAGAAC 58.674 45.833 0.00 0.00 0.00 3.01
26 27 5.575157 CTCTATCCATGAGCCCTACTAGAA 58.425 45.833 0.00 0.00 0.00 2.10
27 28 5.186256 CTCTATCCATGAGCCCTACTAGA 57.814 47.826 0.00 0.00 0.00 2.43
39 40 1.959985 AGACAGTCGGCTCTATCCATG 59.040 52.381 0.00 0.00 0.00 3.66
57 58 2.035961 CCTGGTTTTCGACTCTGTCAGA 59.964 50.000 1.78 1.78 32.09 3.27
58 59 2.408050 CCTGGTTTTCGACTCTGTCAG 58.592 52.381 0.00 0.00 32.09 3.51
59 60 1.070134 CCCTGGTTTTCGACTCTGTCA 59.930 52.381 0.00 0.00 32.09 3.58
60 61 1.343465 TCCCTGGTTTTCGACTCTGTC 59.657 52.381 0.00 0.00 0.00 3.51
66 67 3.756434 TCATCATTTCCCTGGTTTTCGAC 59.244 43.478 0.00 0.00 0.00 4.20
77 78 5.374921 AGTGAGTGATCATCATCATTTCCC 58.625 41.667 0.00 0.00 41.26 3.97
90 91 3.189495 TCGAGACAAGTGAGTGAGTGATC 59.811 47.826 0.00 0.00 0.00 2.92
272 277 2.316108 AGGGCCTTGTTTGTTTACCAG 58.684 47.619 0.00 0.00 0.00 4.00
363 368 2.433664 GGCCGCGGGGAATATACG 60.434 66.667 29.38 0.00 34.06 3.06
375 380 1.451927 TGGTGAGATCATTGGCCGC 60.452 57.895 0.00 0.00 0.00 6.53
405 410 3.555956 AGAAAATGAGCACCGTAATAGCG 59.444 43.478 0.00 0.00 0.00 4.26
408 413 6.403049 TCAGAAGAAAATGAGCACCGTAATA 58.597 36.000 0.00 0.00 0.00 0.98
409 414 5.245531 TCAGAAGAAAATGAGCACCGTAAT 58.754 37.500 0.00 0.00 0.00 1.89
449 454 1.448893 AAGTGTGCGACCAACACGT 60.449 52.632 1.39 0.00 41.03 4.49
450 455 1.011242 CAAGTGTGCGACCAACACG 60.011 57.895 1.39 0.00 41.03 4.49
451 456 1.355210 CCAAGTGTGCGACCAACAC 59.645 57.895 0.00 0.00 38.55 3.32
452 457 2.477176 GCCAAGTGTGCGACCAACA 61.477 57.895 0.00 0.00 0.00 3.33
489 494 3.502990 TACGTGTTTGTCGCCGCCT 62.503 57.895 0.00 0.00 0.00 5.52
522 527 4.778415 CCACGGTCGCCTCGTCAG 62.778 72.222 0.00 0.00 38.94 3.51
597 602 0.389817 TCTGTCATTTCCGAGGCACG 60.390 55.000 0.00 0.00 42.18 5.34
605 610 4.633565 GTGATCAAGACCTCTGTCATTTCC 59.366 45.833 0.00 0.00 44.33 3.13
606 611 5.486526 AGTGATCAAGACCTCTGTCATTTC 58.513 41.667 0.00 0.00 44.33 2.17
666 716 2.279069 CCCACTCGTGCTCTCCACT 61.279 63.158 0.00 0.00 42.42 4.00
776 827 4.390909 ACGCCGGTTCTTGATTAGTTTAAG 59.609 41.667 1.90 0.00 0.00 1.85
798 849 0.447801 GATTGCCGTGACATGGACAC 59.552 55.000 18.32 13.01 35.26 3.67
948 1019 1.506493 GCACACAGAGAGAACACAGG 58.494 55.000 0.00 0.00 0.00 4.00
955 1039 6.128634 CGTACATATATACGCACACAGAGAGA 60.129 42.308 0.00 0.00 41.28 3.10
956 1040 6.016111 CGTACATATATACGCACACAGAGAG 58.984 44.000 0.00 0.00 41.28 3.20
1002 1094 3.372822 CCCAATACGTTCACACATACACC 59.627 47.826 0.00 0.00 0.00 4.16
1024 1409 0.827368 AAGCACCTAGCCAGCTAGAC 59.173 55.000 24.86 14.74 46.56 2.59
1073 3160 3.097728 GACACCGTGTCGACGCTG 61.098 66.667 25.28 21.38 44.68 5.18
1871 4768 1.753073 CTTGGCATCTTCCATGGGAAC 59.247 52.381 13.02 0.00 36.71 3.62
1872 4769 1.358787 ACTTGGCATCTTCCATGGGAA 59.641 47.619 13.02 4.19 39.66 3.97
1875 4772 3.967332 AAAACTTGGCATCTTCCATGG 57.033 42.857 4.97 4.97 36.06 3.66
1876 4773 6.029346 AGTAAAAACTTGGCATCTTCCATG 57.971 37.500 0.00 0.00 35.77 3.66
1877 4774 6.948309 AGTAGTAAAAACTTGGCATCTTCCAT 59.052 34.615 0.00 0.00 35.77 3.41
1878 4775 6.303839 AGTAGTAAAAACTTGGCATCTTCCA 58.696 36.000 0.00 0.00 0.00 3.53
1889 4793 9.543783 CTTCAGGTCAACTAGTAGTAAAAACTT 57.456 33.333 2.50 0.00 0.00 2.66
1895 4799 6.433404 CAGGACTTCAGGTCAACTAGTAGTAA 59.567 42.308 2.50 0.00 46.16 2.24
1934 4838 3.423867 CGATTCGTTTTGCAAACCGAAAT 59.576 39.130 36.69 27.10 41.01 2.17
1972 4876 6.016943 ACTCGAATGGTTTTCGTTCCAAATTA 60.017 34.615 7.51 0.00 42.09 1.40
2043 4947 5.412526 TTGCTACCTGTTAAAGTTCAACG 57.587 39.130 0.00 0.00 0.00 4.10
2046 4950 6.653320 CCACTATTGCTACCTGTTAAAGTTCA 59.347 38.462 0.00 0.00 0.00 3.18
2050 4954 7.681939 TTTCCACTATTGCTACCTGTTAAAG 57.318 36.000 0.00 0.00 0.00 1.85
2123 5027 5.998454 TTGTTATGTTGCCATTTGTTTGG 57.002 34.783 0.00 0.00 39.94 3.28
2128 5032 8.389603 GGAATTGTATTGTTATGTTGCCATTTG 58.610 33.333 0.00 0.00 32.29 2.32
2156 5062 3.257624 CCCCTACAAGTAGTTCTCGTGTT 59.742 47.826 6.50 0.00 0.00 3.32
2157 5063 2.824341 CCCCTACAAGTAGTTCTCGTGT 59.176 50.000 6.50 0.00 0.00 4.49
2158 5064 2.416972 GCCCCTACAAGTAGTTCTCGTG 60.417 54.545 6.50 0.00 0.00 4.35
2159 5065 1.823610 GCCCCTACAAGTAGTTCTCGT 59.176 52.381 6.50 0.00 0.00 4.18
2160 5066 1.822990 TGCCCCTACAAGTAGTTCTCG 59.177 52.381 6.50 0.00 0.00 4.04
2161 5067 2.168728 CCTGCCCCTACAAGTAGTTCTC 59.831 54.545 6.50 0.00 0.00 2.87
2162 5068 2.188817 CCTGCCCCTACAAGTAGTTCT 58.811 52.381 6.50 0.00 0.00 3.01
2163 5069 1.907255 ACCTGCCCCTACAAGTAGTTC 59.093 52.381 6.50 0.00 0.00 3.01
2164 5070 1.907255 GACCTGCCCCTACAAGTAGTT 59.093 52.381 6.50 0.00 0.00 2.24
2166 5072 0.831307 GGACCTGCCCCTACAAGTAG 59.169 60.000 0.21 0.21 0.00 2.57
2167 5073 0.974010 CGGACCTGCCCCTACAAGTA 60.974 60.000 0.00 0.00 0.00 2.24
2169 5075 1.987855 TCGGACCTGCCCCTACAAG 60.988 63.158 0.00 0.00 0.00 3.16
2170 5076 2.120940 TCGGACCTGCCCCTACAA 59.879 61.111 0.00 0.00 0.00 2.41
2171 5077 2.682494 GTCGGACCTGCCCCTACA 60.682 66.667 0.00 0.00 0.00 2.74
2172 5078 3.468140 GGTCGGACCTGCCCCTAC 61.468 72.222 19.92 0.00 34.73 3.18
2173 5079 4.791069 GGGTCGGACCTGCCCCTA 62.791 72.222 25.39 0.00 38.64 3.53
2176 5082 2.372074 TAATGGGTCGGACCTGCCC 61.372 63.158 25.39 10.60 42.64 5.36
2177 5083 1.153229 GTAATGGGTCGGACCTGCC 60.153 63.158 25.39 10.70 38.64 4.85
2178 5084 1.520787 CGTAATGGGTCGGACCTGC 60.521 63.158 25.39 11.41 38.64 4.85
2179 5085 0.248289 AACGTAATGGGTCGGACCTG 59.752 55.000 25.39 11.55 38.64 4.00
2180 5086 0.533951 GAACGTAATGGGTCGGACCT 59.466 55.000 25.39 9.72 38.64 3.85
2181 5087 0.460811 GGAACGTAATGGGTCGGACC 60.461 60.000 19.06 19.06 37.60 4.46
2182 5088 3.055144 GGAACGTAATGGGTCGGAC 57.945 57.895 0.00 0.00 0.00 4.79
2196 5102 1.262417 GTTTGAGGAACGAACCGGAAC 59.738 52.381 9.46 0.00 37.02 3.62
2197 5103 1.134461 TGTTTGAGGAACGAACCGGAA 60.134 47.619 9.46 0.00 40.97 4.30
2198 5104 0.464870 TGTTTGAGGAACGAACCGGA 59.535 50.000 9.46 0.00 40.97 5.14
2199 5105 0.865769 CTGTTTGAGGAACGAACCGG 59.134 55.000 0.00 0.00 40.97 5.28
2200 5106 1.792949 CTCTGTTTGAGGAACGAACCG 59.207 52.381 0.00 0.00 40.97 4.44
2201 5107 1.531578 GCTCTGTTTGAGGAACGAACC 59.468 52.381 0.00 0.00 42.87 3.62
2202 5108 2.032808 GTGCTCTGTTTGAGGAACGAAC 60.033 50.000 0.00 0.00 44.67 3.95
2203 5109 2.210116 GTGCTCTGTTTGAGGAACGAA 58.790 47.619 0.00 0.00 44.67 3.85
2204 5110 1.138069 TGTGCTCTGTTTGAGGAACGA 59.862 47.619 0.00 0.00 44.67 3.85
2205 5111 1.261619 GTGTGCTCTGTTTGAGGAACG 59.738 52.381 0.00 0.00 44.67 3.95
2206 5112 1.604278 GGTGTGCTCTGTTTGAGGAAC 59.396 52.381 0.00 0.00 44.67 3.62
2207 5113 1.476833 GGGTGTGCTCTGTTTGAGGAA 60.477 52.381 0.00 0.00 44.67 3.36
2208 5114 0.108585 GGGTGTGCTCTGTTTGAGGA 59.891 55.000 0.00 0.00 42.87 3.71
2209 5115 0.109342 AGGGTGTGCTCTGTTTGAGG 59.891 55.000 0.00 0.00 42.87 3.86
2210 5116 2.839486 TAGGGTGTGCTCTGTTTGAG 57.161 50.000 0.00 0.00 45.33 3.02
2211 5117 2.703536 TCTTAGGGTGTGCTCTGTTTGA 59.296 45.455 0.00 0.00 0.00 2.69
2212 5118 3.070018 CTCTTAGGGTGTGCTCTGTTTG 58.930 50.000 0.00 0.00 0.00 2.93
2213 5119 2.706190 ACTCTTAGGGTGTGCTCTGTTT 59.294 45.455 0.00 0.00 0.00 2.83
2214 5120 2.330216 ACTCTTAGGGTGTGCTCTGTT 58.670 47.619 0.00 0.00 0.00 3.16
2215 5121 2.016905 ACTCTTAGGGTGTGCTCTGT 57.983 50.000 0.00 0.00 0.00 3.41
2216 5122 2.826128 TGTACTCTTAGGGTGTGCTCTG 59.174 50.000 0.00 0.00 0.00 3.35
2217 5123 3.093057 CTGTACTCTTAGGGTGTGCTCT 58.907 50.000 0.00 0.00 0.00 4.09
2218 5124 2.826725 ACTGTACTCTTAGGGTGTGCTC 59.173 50.000 0.00 0.00 0.00 4.26
2219 5125 2.890814 ACTGTACTCTTAGGGTGTGCT 58.109 47.619 0.00 0.00 0.00 4.40
2220 5126 3.679824 AACTGTACTCTTAGGGTGTGC 57.320 47.619 0.00 0.00 0.00 4.57
2221 5127 5.607477 TCAAAACTGTACTCTTAGGGTGTG 58.393 41.667 0.00 0.00 0.00 3.82
2222 5128 5.881923 TCAAAACTGTACTCTTAGGGTGT 57.118 39.130 0.00 0.00 0.00 4.16
2223 5129 5.469084 GGTTCAAAACTGTACTCTTAGGGTG 59.531 44.000 0.00 0.00 0.00 4.61
2224 5130 5.131475 TGGTTCAAAACTGTACTCTTAGGGT 59.869 40.000 0.00 0.00 0.00 4.34
2225 5131 5.617252 TGGTTCAAAACTGTACTCTTAGGG 58.383 41.667 0.00 0.00 0.00 3.53
2226 5132 7.562454 TTTGGTTCAAAACTGTACTCTTAGG 57.438 36.000 0.00 0.00 29.89 2.69
2227 5133 9.665264 GATTTTGGTTCAAAACTGTACTCTTAG 57.335 33.333 7.81 0.00 44.40 2.18
2231 5137 7.757624 TGTTGATTTTGGTTCAAAACTGTACTC 59.242 33.333 7.81 2.71 44.40 2.59
2238 5144 6.676237 ACCATGTTGATTTTGGTTCAAAAC 57.324 33.333 7.81 4.20 44.40 2.43
2259 5165 0.038892 TGTTACGTCGAGGCTGAACC 60.039 55.000 4.75 0.00 39.61 3.62
2267 5173 4.618338 TCGTGAAAAATGTTACGTCGAG 57.382 40.909 0.00 0.00 37.74 4.04
2270 5176 6.148270 TGAGATCGTGAAAAATGTTACGTC 57.852 37.500 0.00 0.00 37.74 4.34
2345 5251 1.445238 GACTGAGGACTGCTGACGC 60.445 63.158 0.00 0.00 0.00 5.19
2346 5252 1.214062 GGACTGAGGACTGCTGACG 59.786 63.158 0.00 0.00 0.00 4.35
2353 5259 3.858135 TGGACTTTTAGGACTGAGGACT 58.142 45.455 0.00 0.00 0.00 3.85
2365 5271 8.754991 TCTTTTGGTAGATTGTTGGACTTTTA 57.245 30.769 0.00 0.00 0.00 1.52
2368 5274 7.839680 AATCTTTTGGTAGATTGTTGGACTT 57.160 32.000 0.00 0.00 41.94 3.01
2407 5331 1.726791 CCTGTGTCGATGTAGTTGCAC 59.273 52.381 0.00 0.00 0.00 4.57
2433 5357 1.667236 TTGGTGACGATGATGGATGC 58.333 50.000 0.00 0.00 0.00 3.91
2445 5369 1.102978 ACTGTGGTGCTTTTGGTGAC 58.897 50.000 0.00 0.00 0.00 3.67
2475 5399 6.455360 TGATGGCAAAAGAATATCTTGGTC 57.545 37.500 0.00 0.00 36.71 4.02
2485 5413 2.178580 GGGGTGATGATGGCAAAAGAA 58.821 47.619 0.00 0.00 0.00 2.52
2519 5450 7.542534 ACATCGTTGTTAACTTGAGTTGTTA 57.457 32.000 7.22 0.00 38.90 2.41
2520 5451 6.431198 ACATCGTTGTTAACTTGAGTTGTT 57.569 33.333 7.22 0.00 38.90 2.83
2575 5506 8.412456 TCAACAGAAAGTAGCATTTCATTTTGA 58.588 29.630 10.48 11.11 40.86 2.69
2588 5519 4.565166 TGTTCGTGTGTCAACAGAAAGTAG 59.435 41.667 0.00 0.00 36.84 2.57
2611 5542 0.031178 GTCAAGGGTACACGTGACGT 59.969 55.000 24.98 4.10 39.37 4.34
2612 5543 2.805277 GTCAAGGGTACACGTGACG 58.195 57.895 24.98 2.24 39.37 4.35
2613 5544 1.280206 GCGTCAAGGGTACACGTGAC 61.280 60.000 27.95 27.95 43.41 3.67
2614 5545 1.007038 GCGTCAAGGGTACACGTGA 60.007 57.895 25.01 9.86 35.91 4.35
2615 5546 2.025418 GGCGTCAAGGGTACACGTG 61.025 63.158 15.48 15.48 35.91 4.49
2616 5547 2.341176 GGCGTCAAGGGTACACGT 59.659 61.111 4.84 0.00 35.91 4.49
2617 5548 2.807895 CGGCGTCAAGGGTACACG 60.808 66.667 0.00 0.00 36.60 4.49
2618 5549 2.433664 CCGGCGTCAAGGGTACAC 60.434 66.667 6.01 0.00 0.00 2.90
2619 5550 3.697747 CCCGGCGTCAAGGGTACA 61.698 66.667 6.01 0.00 42.67 2.90
2620 5551 4.462280 CCCCGGCGTCAAGGGTAC 62.462 72.222 6.01 0.00 46.17 3.34
2625 5556 4.096003 ATCACCCCCGGCGTCAAG 62.096 66.667 6.01 0.00 0.00 3.02
2626 5557 4.402528 CATCACCCCCGGCGTCAA 62.403 66.667 6.01 0.00 0.00 3.18
2633 5564 4.854924 TGCGATGCATCACCCCCG 62.855 66.667 25.70 12.71 31.71 5.73
2634 5565 2.440065 TTGCGATGCATCACCCCC 60.440 61.111 25.70 8.99 38.76 5.40
2635 5566 1.718757 GAGTTGCGATGCATCACCCC 61.719 60.000 25.70 10.81 38.76 4.95
2636 5567 1.026182 TGAGTTGCGATGCATCACCC 61.026 55.000 25.70 13.63 38.76 4.61
2637 5568 0.097674 GTGAGTTGCGATGCATCACC 59.902 55.000 25.70 16.01 40.52 4.02
2638 5569 0.247419 CGTGAGTTGCGATGCATCAC 60.247 55.000 25.70 17.25 41.96 3.06
2639 5570 0.670239 ACGTGAGTTGCGATGCATCA 60.670 50.000 25.70 5.71 46.40 3.07
2640 5571 2.081526 ACGTGAGTTGCGATGCATC 58.918 52.632 17.10 17.10 46.40 3.91
2641 5572 4.284123 ACGTGAGTTGCGATGCAT 57.716 50.000 0.00 0.00 46.40 3.96
2652 5583 1.507174 GGGTCTCCTTCGACGTGAG 59.493 63.158 0.00 0.00 34.75 3.51
2653 5584 2.330372 CGGGTCTCCTTCGACGTGA 61.330 63.158 0.00 0.00 34.75 4.35
2654 5585 2.178521 CGGGTCTCCTTCGACGTG 59.821 66.667 0.00 0.00 34.75 4.49
2655 5586 2.033141 TCGGGTCTCCTTCGACGT 59.967 61.111 0.00 0.00 34.75 4.34
2656 5587 2.484203 GTCGGGTCTCCTTCGACG 59.516 66.667 0.00 0.00 42.60 5.12
2658 5589 2.749044 CGGTCGGGTCTCCTTCGA 60.749 66.667 0.00 0.00 0.00 3.71
2659 5590 2.749044 TCGGTCGGGTCTCCTTCG 60.749 66.667 0.00 0.00 0.00 3.79
2660 5591 1.935327 CTGTCGGTCGGGTCTCCTTC 61.935 65.000 0.00 0.00 0.00 3.46
2661 5592 1.977544 CTGTCGGTCGGGTCTCCTT 60.978 63.158 0.00 0.00 0.00 3.36
2662 5593 2.361357 CTGTCGGTCGGGTCTCCT 60.361 66.667 0.00 0.00 0.00 3.69
2663 5594 4.131088 GCTGTCGGTCGGGTCTCC 62.131 72.222 0.00 0.00 0.00 3.71
2664 5595 4.477975 CGCTGTCGGTCGGGTCTC 62.478 72.222 0.00 0.00 0.00 3.36
2669 5600 4.246206 TATCGCGCTGTCGGTCGG 62.246 66.667 5.56 0.00 35.95 4.79
2670 5601 3.017314 GTATCGCGCTGTCGGTCG 61.017 66.667 5.56 0.00 35.95 4.79
2671 5602 3.017314 CGTATCGCGCTGTCGGTC 61.017 66.667 5.56 0.00 35.95 4.79
2682 5613 1.181001 GTCGACTGTCTTGCGTATCG 58.819 55.000 8.70 0.00 0.00 2.92
2683 5614 1.181001 CGTCGACTGTCTTGCGTATC 58.819 55.000 14.70 0.00 0.00 2.24
2684 5615 0.179171 CCGTCGACTGTCTTGCGTAT 60.179 55.000 14.70 0.00 0.00 3.06
2685 5616 1.208358 CCGTCGACTGTCTTGCGTA 59.792 57.895 14.70 0.00 0.00 4.42
2686 5617 2.050351 CCGTCGACTGTCTTGCGT 60.050 61.111 14.70 0.00 0.00 5.24
2687 5618 2.805353 CCCGTCGACTGTCTTGCG 60.805 66.667 14.70 7.28 0.00 4.85
2688 5619 3.112709 GCCCGTCGACTGTCTTGC 61.113 66.667 14.70 2.09 0.00 4.01
2689 5620 2.805353 CGCCCGTCGACTGTCTTG 60.805 66.667 14.70 0.00 41.67 3.02
2690 5621 4.719369 GCGCCCGTCGACTGTCTT 62.719 66.667 14.70 0.00 41.67 3.01
2692 5623 4.719369 AAGCGCCCGTCGACTGTC 62.719 66.667 14.70 0.00 41.67 3.51
2693 5624 3.802418 AAAAGCGCCCGTCGACTGT 62.802 57.895 14.70 0.00 41.67 3.55
2694 5625 3.041940 AAAAGCGCCCGTCGACTG 61.042 61.111 14.70 7.04 41.67 3.51
2695 5626 3.041940 CAAAAGCGCCCGTCGACT 61.042 61.111 14.70 0.00 41.67 4.18
2696 5627 4.736631 GCAAAAGCGCCCGTCGAC 62.737 66.667 2.29 5.18 41.67 4.20
2698 5629 4.741781 CTGCAAAAGCGCCCGTCG 62.742 66.667 2.29 0.00 42.12 5.12
2699 5630 3.353836 TCTGCAAAAGCGCCCGTC 61.354 61.111 2.29 0.00 0.00 4.79
2700 5631 3.660111 GTCTGCAAAAGCGCCCGT 61.660 61.111 2.29 0.00 0.00 5.28
2701 5632 4.404654 GGTCTGCAAAAGCGCCCG 62.405 66.667 2.29 0.00 0.00 6.13
2702 5633 4.056125 GGGTCTGCAAAAGCGCCC 62.056 66.667 2.29 0.00 34.89 6.13
2703 5634 4.404654 CGGGTCTGCAAAAGCGCC 62.405 66.667 2.29 0.00 0.00 6.53
2704 5635 2.400896 TTTCGGGTCTGCAAAAGCGC 62.401 55.000 0.00 0.00 0.00 5.92
2705 5636 0.030101 TTTTCGGGTCTGCAAAAGCG 59.970 50.000 0.00 0.00 0.00 4.68
2706 5637 1.487482 GTTTTCGGGTCTGCAAAAGC 58.513 50.000 0.00 0.00 0.00 3.51
2707 5638 1.269569 GGGTTTTCGGGTCTGCAAAAG 60.270 52.381 0.00 0.00 0.00 2.27
2708 5639 0.747852 GGGTTTTCGGGTCTGCAAAA 59.252 50.000 0.00 0.00 0.00 2.44
2709 5640 1.110518 GGGGTTTTCGGGTCTGCAAA 61.111 55.000 0.00 0.00 0.00 3.68
2710 5641 1.529713 GGGGTTTTCGGGTCTGCAA 60.530 57.895 0.00 0.00 0.00 4.08
2711 5642 2.114411 GGGGTTTTCGGGTCTGCA 59.886 61.111 0.00 0.00 0.00 4.41
2712 5643 2.114411 TGGGGTTTTCGGGTCTGC 59.886 61.111 0.00 0.00 0.00 4.26
2713 5644 1.149627 TGTGGGGTTTTCGGGTCTG 59.850 57.895 0.00 0.00 0.00 3.51
2714 5645 1.149854 GTGTGGGGTTTTCGGGTCT 59.850 57.895 0.00 0.00 0.00 3.85
2715 5646 1.900016 GGTGTGGGGTTTTCGGGTC 60.900 63.158 0.00 0.00 0.00 4.46
2716 5647 2.196502 GGTGTGGGGTTTTCGGGT 59.803 61.111 0.00 0.00 0.00 5.28
2717 5648 2.599281 GGGTGTGGGGTTTTCGGG 60.599 66.667 0.00 0.00 0.00 5.14
2718 5649 2.599281 GGGGTGTGGGGTTTTCGG 60.599 66.667 0.00 0.00 0.00 4.30
2719 5650 2.599281 GGGGGTGTGGGGTTTTCG 60.599 66.667 0.00 0.00 0.00 3.46
2720 5651 2.599281 CGGGGGTGTGGGGTTTTC 60.599 66.667 0.00 0.00 0.00 2.29
2721 5652 4.227583 CCGGGGGTGTGGGGTTTT 62.228 66.667 0.00 0.00 0.00 2.43
2738 5669 3.918328 TTCCTGACGGGGTCCCTCC 62.918 68.421 8.15 0.00 35.33 4.30
2739 5670 2.284405 TTCCTGACGGGGTCCCTC 60.284 66.667 8.15 0.00 35.33 4.30
2740 5671 2.284699 CTTCCTGACGGGGTCCCT 60.285 66.667 8.15 0.00 35.33 4.20
2741 5672 2.606826 ACTTCCTGACGGGGTCCC 60.607 66.667 0.00 0.00 35.33 4.46
2742 5673 2.663196 CACTTCCTGACGGGGTCC 59.337 66.667 0.00 0.00 35.33 4.46
2743 5674 2.047179 GCACTTCCTGACGGGGTC 60.047 66.667 0.00 0.00 35.33 4.46
2744 5675 4.003788 CGCACTTCCTGACGGGGT 62.004 66.667 0.00 0.00 35.33 4.95
2745 5676 4.760047 CCGCACTTCCTGACGGGG 62.760 72.222 0.00 0.00 41.95 5.73
2751 5682 3.740128 ATAGCCGCCGCACTTCCTG 62.740 63.158 0.00 0.00 37.52 3.86
2752 5683 3.470888 ATAGCCGCCGCACTTCCT 61.471 61.111 0.00 0.00 37.52 3.36
2753 5684 3.272334 CATAGCCGCCGCACTTCC 61.272 66.667 0.00 0.00 37.52 3.46
2754 5685 3.272334 CCATAGCCGCCGCACTTC 61.272 66.667 0.00 0.00 37.52 3.01
2755 5686 4.856801 CCCATAGCCGCCGCACTT 62.857 66.667 0.00 0.00 37.52 3.16
2761 5692 4.937431 GGACAGCCCATAGCCGCC 62.937 72.222 0.00 0.00 45.47 6.13
2762 5693 2.441822 CTAGGACAGCCCATAGCCGC 62.442 65.000 0.00 0.00 45.47 6.53
2763 5694 1.668294 CTAGGACAGCCCATAGCCG 59.332 63.158 0.00 0.00 45.47 5.52
2764 5695 0.764752 ACCTAGGACAGCCCATAGCC 60.765 60.000 17.98 0.00 45.47 3.93
2765 5696 1.132500 AACCTAGGACAGCCCATAGC 58.868 55.000 17.98 0.00 44.25 2.97
2766 5697 2.398588 TCAACCTAGGACAGCCCATAG 58.601 52.381 17.98 0.00 37.41 2.23
2767 5698 2.561209 TCAACCTAGGACAGCCCATA 57.439 50.000 17.98 0.00 37.41 2.74
2768 5699 1.898863 ATCAACCTAGGACAGCCCAT 58.101 50.000 17.98 0.00 37.41 4.00
2769 5700 1.559682 GAATCAACCTAGGACAGCCCA 59.440 52.381 17.98 0.00 37.41 5.36
2770 5701 1.473434 CGAATCAACCTAGGACAGCCC 60.473 57.143 17.98 0.00 33.31 5.19
2771 5702 1.941325 CGAATCAACCTAGGACAGCC 58.059 55.000 17.98 0.00 0.00 4.85
2772 5703 1.134670 AGCGAATCAACCTAGGACAGC 60.135 52.381 17.98 10.46 0.00 4.40
2773 5704 2.796383 CGAGCGAATCAACCTAGGACAG 60.796 54.545 17.98 4.59 0.00 3.51
2774 5705 1.134367 CGAGCGAATCAACCTAGGACA 59.866 52.381 17.98 0.00 0.00 4.02
2775 5706 1.841450 CGAGCGAATCAACCTAGGAC 58.159 55.000 17.98 0.00 0.00 3.85
2776 5707 0.102481 GCGAGCGAATCAACCTAGGA 59.898 55.000 17.98 0.00 0.00 2.94
2777 5708 0.876342 GGCGAGCGAATCAACCTAGG 60.876 60.000 7.41 7.41 0.00 3.02
2778 5709 0.876342 GGGCGAGCGAATCAACCTAG 60.876 60.000 0.00 0.00 0.00 3.02
2779 5710 1.143183 GGGCGAGCGAATCAACCTA 59.857 57.895 0.00 0.00 0.00 3.08
2780 5711 2.125106 GGGCGAGCGAATCAACCT 60.125 61.111 0.00 0.00 0.00 3.50
2781 5712 2.306255 TAGGGGCGAGCGAATCAACC 62.306 60.000 0.00 0.00 0.00 3.77
2782 5713 0.876342 CTAGGGGCGAGCGAATCAAC 60.876 60.000 0.00 0.00 0.00 3.18
2783 5714 1.040893 TCTAGGGGCGAGCGAATCAA 61.041 55.000 0.00 0.00 0.00 2.57
2784 5715 1.455032 TCTAGGGGCGAGCGAATCA 60.455 57.895 0.00 0.00 0.00 2.57
2785 5716 1.287503 CTCTAGGGGCGAGCGAATC 59.712 63.158 0.00 0.00 0.00 2.52
2786 5717 2.862223 GCTCTAGGGGCGAGCGAAT 61.862 63.158 0.00 0.00 43.69 3.34
2787 5718 3.528370 GCTCTAGGGGCGAGCGAA 61.528 66.667 0.00 0.00 43.69 4.70
2791 5722 3.291383 CGAGGCTCTAGGGGCGAG 61.291 72.222 11.03 5.00 36.85 5.03
2792 5723 4.896829 CCGAGGCTCTAGGGGCGA 62.897 72.222 11.03 0.00 36.85 5.54
2797 5728 1.437986 CGAAACCCGAGGCTCTAGG 59.562 63.158 13.50 15.19 41.76 3.02
2798 5729 1.227002 GCGAAACCCGAGGCTCTAG 60.227 63.158 13.50 6.02 41.76 2.43
2799 5730 1.945354 CTGCGAAACCCGAGGCTCTA 61.945 60.000 13.50 0.00 41.76 2.43
2800 5731 3.302347 CTGCGAAACCCGAGGCTCT 62.302 63.158 13.50 0.00 41.76 4.09
2801 5732 2.815647 CTGCGAAACCCGAGGCTC 60.816 66.667 3.87 3.87 41.76 4.70
2804 5735 2.815647 GAGCTGCGAAACCCGAGG 60.816 66.667 0.00 0.00 41.76 4.63
2805 5736 1.807573 GAGAGCTGCGAAACCCGAG 60.808 63.158 0.00 0.00 41.76 4.63
2806 5737 2.094757 TTGAGAGCTGCGAAACCCGA 62.095 55.000 0.00 0.00 41.76 5.14
2807 5738 1.227999 TTTGAGAGCTGCGAAACCCG 61.228 55.000 0.00 0.00 42.21 5.28
2808 5739 0.238553 GTTTGAGAGCTGCGAAACCC 59.761 55.000 0.00 0.00 0.00 4.11
2809 5740 0.944386 TGTTTGAGAGCTGCGAAACC 59.056 50.000 0.00 0.00 0.00 3.27
2810 5741 1.657538 CGTGTTTGAGAGCTGCGAAAC 60.658 52.381 0.00 0.00 0.00 2.78
2811 5742 0.581529 CGTGTTTGAGAGCTGCGAAA 59.418 50.000 0.00 0.00 0.00 3.46
2812 5743 0.249280 TCGTGTTTGAGAGCTGCGAA 60.249 50.000 0.00 0.00 0.00 4.70
2813 5744 0.249280 TTCGTGTTTGAGAGCTGCGA 60.249 50.000 0.00 0.00 0.00 5.10
2814 5745 0.162507 CTTCGTGTTTGAGAGCTGCG 59.837 55.000 0.00 0.00 0.00 5.18
2815 5746 1.502231 TCTTCGTGTTTGAGAGCTGC 58.498 50.000 0.00 0.00 0.00 5.25
2816 5747 2.866156 TGTTCTTCGTGTTTGAGAGCTG 59.134 45.455 0.00 0.00 0.00 4.24
2817 5748 3.126831 CTGTTCTTCGTGTTTGAGAGCT 58.873 45.455 0.00 0.00 0.00 4.09
2818 5749 2.348966 GCTGTTCTTCGTGTTTGAGAGC 60.349 50.000 0.00 0.00 0.00 4.09
2819 5750 2.097202 CGCTGTTCTTCGTGTTTGAGAG 60.097 50.000 0.00 0.00 0.00 3.20
2820 5751 1.858458 CGCTGTTCTTCGTGTTTGAGA 59.142 47.619 0.00 0.00 0.00 3.27
2821 5752 1.858458 TCGCTGTTCTTCGTGTTTGAG 59.142 47.619 0.00 0.00 0.00 3.02
2822 5753 1.929230 TCGCTGTTCTTCGTGTTTGA 58.071 45.000 0.00 0.00 0.00 2.69
2823 5754 2.284150 TCTTCGCTGTTCTTCGTGTTTG 59.716 45.455 0.00 0.00 0.00 2.93
2824 5755 2.546778 TCTTCGCTGTTCTTCGTGTTT 58.453 42.857 0.00 0.00 0.00 2.83
2825 5756 2.218953 TCTTCGCTGTTCTTCGTGTT 57.781 45.000 0.00 0.00 0.00 3.32
2826 5757 1.859080 GTTCTTCGCTGTTCTTCGTGT 59.141 47.619 0.00 0.00 0.00 4.49
2827 5758 1.136884 CGTTCTTCGCTGTTCTTCGTG 60.137 52.381 0.00 0.00 0.00 4.35
2828 5759 1.129326 CGTTCTTCGCTGTTCTTCGT 58.871 50.000 0.00 0.00 0.00 3.85
2829 5760 1.383744 CTCGTTCTTCGCTGTTCTTCG 59.616 52.381 0.00 0.00 39.67 3.79
2830 5761 2.662700 TCTCGTTCTTCGCTGTTCTTC 58.337 47.619 0.00 0.00 39.67 2.87
2831 5762 2.795175 TCTCGTTCTTCGCTGTTCTT 57.205 45.000 0.00 0.00 39.67 2.52
2832 5763 3.690139 TCTATCTCGTTCTTCGCTGTTCT 59.310 43.478 0.00 0.00 39.67 3.01
2833 5764 4.017380 TCTATCTCGTTCTTCGCTGTTC 57.983 45.455 0.00 0.00 39.67 3.18
2834 5765 4.436242 TTCTATCTCGTTCTTCGCTGTT 57.564 40.909 0.00 0.00 39.67 3.16
2835 5766 4.436242 TTTCTATCTCGTTCTTCGCTGT 57.564 40.909 0.00 0.00 39.67 4.40
2836 5767 4.031878 GGTTTTCTATCTCGTTCTTCGCTG 59.968 45.833 0.00 0.00 39.67 5.18
2837 5768 4.174762 GGTTTTCTATCTCGTTCTTCGCT 58.825 43.478 0.00 0.00 39.67 4.93
2838 5769 3.000971 CGGTTTTCTATCTCGTTCTTCGC 60.001 47.826 0.00 0.00 39.67 4.70
2839 5770 3.546670 CCGGTTTTCTATCTCGTTCTTCG 59.453 47.826 0.00 0.00 41.41 3.79
2840 5771 4.326548 CACCGGTTTTCTATCTCGTTCTTC 59.673 45.833 2.97 0.00 0.00 2.87
2841 5772 4.243270 CACCGGTTTTCTATCTCGTTCTT 58.757 43.478 2.97 0.00 0.00 2.52
2842 5773 3.368116 CCACCGGTTTTCTATCTCGTTCT 60.368 47.826 2.97 0.00 0.00 3.01
2843 5774 2.928116 CCACCGGTTTTCTATCTCGTTC 59.072 50.000 2.97 0.00 0.00 3.95
2844 5775 2.564062 TCCACCGGTTTTCTATCTCGTT 59.436 45.455 2.97 0.00 0.00 3.85
2845 5776 2.165845 CTCCACCGGTTTTCTATCTCGT 59.834 50.000 2.97 0.00 0.00 4.18
2846 5777 2.426024 TCTCCACCGGTTTTCTATCTCG 59.574 50.000 2.97 0.00 0.00 4.04
2847 5778 3.700038 TCTCTCCACCGGTTTTCTATCTC 59.300 47.826 2.97 0.00 0.00 2.75
2848 5779 3.709587 TCTCTCCACCGGTTTTCTATCT 58.290 45.455 2.97 0.00 0.00 1.98
2849 5780 4.674281 ATCTCTCCACCGGTTTTCTATC 57.326 45.455 2.97 0.00 0.00 2.08
2850 5781 6.555463 TTTATCTCTCCACCGGTTTTCTAT 57.445 37.500 2.97 0.00 0.00 1.98
2851 5782 6.168389 GTTTTATCTCTCCACCGGTTTTCTA 58.832 40.000 2.97 0.00 0.00 2.10
2852 5783 4.903045 TTTATCTCTCCACCGGTTTTCT 57.097 40.909 2.97 0.00 0.00 2.52
2853 5784 4.142966 CGTTTTATCTCTCCACCGGTTTTC 60.143 45.833 2.97 0.00 0.00 2.29
2854 5785 3.749609 CGTTTTATCTCTCCACCGGTTTT 59.250 43.478 2.97 0.00 0.00 2.43
2855 5786 3.244318 ACGTTTTATCTCTCCACCGGTTT 60.244 43.478 2.97 0.00 0.00 3.27
2856 5787 2.301009 ACGTTTTATCTCTCCACCGGTT 59.699 45.455 2.97 0.00 0.00 4.44
2857 5788 1.897802 ACGTTTTATCTCTCCACCGGT 59.102 47.619 0.00 0.00 0.00 5.28
2858 5789 2.667473 ACGTTTTATCTCTCCACCGG 57.333 50.000 0.00 0.00 0.00 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.