Multiple sequence alignment - TraesCS5A01G312200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G312200 chr5A 100.000 3584 0 0 1 3584 523814511 523818094 0.000000e+00 6619.0
1 TraesCS5A01G312200 chr5A 94.521 146 8 0 435 580 645471501 645471356 3.600000e-55 226.0
2 TraesCS5A01G312200 chr5B 93.601 3016 106 29 598 3582 495019329 495022288 0.000000e+00 4420.0
3 TraesCS5A01G312200 chr5B 95.122 123 6 0 248 370 495019217 495019339 1.020000e-45 195.0
4 TraesCS5A01G312200 chr5D 93.417 2947 90 29 598 3495 412076419 412079310 0.000000e+00 4272.0
5 TraesCS5A01G312200 chr5D 95.890 146 6 0 435 580 8629939 8629794 1.660000e-58 237.0
6 TraesCS5A01G312200 chr5D 94.828 116 6 0 252 367 412076311 412076426 7.900000e-42 182.0
7 TraesCS5A01G312200 chr5D 89.928 139 14 0 38 176 412075794 412075932 2.840000e-41 180.0
8 TraesCS5A01G312200 chr5D 93.396 106 6 1 162 266 412075946 412076051 4.790000e-34 156.0
9 TraesCS5A01G312200 chr5D 97.727 44 1 0 3539 3582 412079311 412079354 3.840000e-10 76.8
10 TraesCS5A01G312200 chr5D 89.474 57 3 1 371 427 6461110 6461057 6.420000e-08 69.4
11 TraesCS5A01G312200 chr7A 81.406 1366 242 10 1127 2483 274662814 274661452 0.000000e+00 1105.0
12 TraesCS5A01G312200 chr7B 81.040 1366 247 9 1127 2483 233027603 233026241 0.000000e+00 1077.0
13 TraesCS5A01G312200 chr7D 80.994 1368 244 12 1127 2483 255059163 255057801 0.000000e+00 1072.0
14 TraesCS5A01G312200 chr2A 72.569 1203 246 76 1175 2344 653000381 653001532 2.080000e-82 316.0
15 TraesCS5A01G312200 chr2B 77.165 508 96 17 1847 2344 598561635 598562132 9.800000e-71 278.0
16 TraesCS5A01G312200 chr2D 76.621 509 97 20 1847 2344 509230197 509230694 9.870000e-66 261.0
17 TraesCS5A01G312200 chr2D 94.444 144 8 0 435 578 99661057 99660914 4.660000e-54 222.0
18 TraesCS5A01G312200 chr6B 95.833 144 6 0 435 578 239325325 239325468 2.150000e-57 233.0
19 TraesCS5A01G312200 chr6B 73.622 508 112 20 1173 1669 484100845 484100349 3.680000e-40 176.0
20 TraesCS5A01G312200 chr3D 95.833 144 6 0 435 578 276578172 276578315 2.150000e-57 233.0
21 TraesCS5A01G312200 chr1D 95.833 144 6 0 435 578 250737027 250736884 2.150000e-57 233.0
22 TraesCS5A01G312200 chr1D 84.286 70 7 2 359 427 137147023 137147089 8.310000e-07 65.8
23 TraesCS5A01G312200 chr1A 95.833 144 6 0 435 578 371219103 371218960 2.150000e-57 233.0
24 TraesCS5A01G312200 chr3B 91.667 144 12 0 435 578 30910386 30910529 2.180000e-47 200.0
25 TraesCS5A01G312200 chr3B 86.806 144 18 1 435 578 637901394 637901536 3.700000e-35 159.0
26 TraesCS5A01G312200 chr6D 74.409 508 108 20 1173 1669 336366560 336367056 7.850000e-47 198.0
27 TraesCS5A01G312200 chr6A 73.616 542 121 20 1139 1669 476000196 476000726 4.720000e-44 189.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G312200 chr5A 523814511 523818094 3583 False 6619.00 6619 100.0000 1 3584 1 chr5A.!!$F1 3583
1 TraesCS5A01G312200 chr5B 495019217 495022288 3071 False 2307.50 4420 94.3615 248 3582 2 chr5B.!!$F1 3334
2 TraesCS5A01G312200 chr5D 412075794 412079354 3560 False 973.36 4272 93.8592 38 3582 5 chr5D.!!$F1 3544
3 TraesCS5A01G312200 chr7A 274661452 274662814 1362 True 1105.00 1105 81.4060 1127 2483 1 chr7A.!!$R1 1356
4 TraesCS5A01G312200 chr7B 233026241 233027603 1362 True 1077.00 1077 81.0400 1127 2483 1 chr7B.!!$R1 1356
5 TraesCS5A01G312200 chr7D 255057801 255059163 1362 True 1072.00 1072 80.9940 1127 2483 1 chr7D.!!$R1 1356
6 TraesCS5A01G312200 chr2A 653000381 653001532 1151 False 316.00 316 72.5690 1175 2344 1 chr2A.!!$F1 1169

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
501 805 0.029834 CGCACCATCCATTTGCTAGC 59.97 55.0 8.10 8.10 33.90 3.42 F
579 883 0.109597 GTCCGCGAAGTACTTCCGAA 60.11 55.0 31.05 19.05 36.25 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2498 2942 1.669115 CTCTTGCCACCGTCCACAG 60.669 63.158 0.0 0.0 0.00 3.66 R
2697 3141 0.248377 GATCGCAGCTTGTCATTGCC 60.248 55.000 0.0 0.0 34.42 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.920085 CGAACATGTGTTGCAATATCTTG 57.080 39.130 0.59 7.47 38.56 3.02
23 24 5.630061 CGAACATGTGTTGCAATATCTTGA 58.370 37.500 0.59 0.00 38.56 3.02
24 25 6.260377 CGAACATGTGTTGCAATATCTTGAT 58.740 36.000 0.59 0.30 38.56 2.57
25 26 6.195798 CGAACATGTGTTGCAATATCTTGATG 59.804 38.462 0.59 1.62 38.56 3.07
26 27 5.898174 ACATGTGTTGCAATATCTTGATGG 58.102 37.500 0.59 0.00 34.04 3.51
27 28 4.987408 TGTGTTGCAATATCTTGATGGG 57.013 40.909 0.59 0.00 34.04 4.00
28 29 4.598022 TGTGTTGCAATATCTTGATGGGA 58.402 39.130 0.59 0.00 34.04 4.37
29 30 5.202765 TGTGTTGCAATATCTTGATGGGAT 58.797 37.500 0.59 0.00 34.04 3.85
30 31 5.068067 TGTGTTGCAATATCTTGATGGGATG 59.932 40.000 0.59 0.00 34.04 3.51
31 32 5.300034 GTGTTGCAATATCTTGATGGGATGA 59.700 40.000 0.59 0.00 34.04 2.92
32 33 5.892686 TGTTGCAATATCTTGATGGGATGAA 59.107 36.000 0.59 0.00 34.04 2.57
33 34 6.551975 TGTTGCAATATCTTGATGGGATGAAT 59.448 34.615 0.59 0.00 34.04 2.57
34 35 6.829229 TGCAATATCTTGATGGGATGAATC 57.171 37.500 0.00 0.00 34.04 2.52
35 36 5.713389 TGCAATATCTTGATGGGATGAATCC 59.287 40.000 0.26 0.26 39.26 3.01
36 37 5.713389 GCAATATCTTGATGGGATGAATCCA 59.287 40.000 11.39 0.00 40.61 3.41
53 54 8.599624 ATGAATCCAACATTCTTACAATTCCT 57.400 30.769 0.00 0.00 0.00 3.36
70 71 1.485066 TCCTGGATTTCTCGCCCTAAC 59.515 52.381 0.00 0.00 0.00 2.34
74 75 1.671328 GGATTTCTCGCCCTAACAAGC 59.329 52.381 0.00 0.00 0.00 4.01
94 95 4.053983 AGCGATATAGCAGACACATGTTG 58.946 43.478 10.60 0.00 40.15 3.33
133 134 5.153950 GGAGATCCCACATTAGTATCACC 57.846 47.826 0.00 0.00 34.14 4.02
134 135 4.593206 GGAGATCCCACATTAGTATCACCA 59.407 45.833 0.00 0.00 30.47 4.17
136 137 6.119240 AGATCCCACATTAGTATCACCATG 57.881 41.667 0.00 0.00 0.00 3.66
137 138 4.705110 TCCCACATTAGTATCACCATGG 57.295 45.455 11.19 11.19 0.00 3.66
144 145 7.255590 CCACATTAGTATCACCATGGGATTTTC 60.256 40.741 18.09 9.69 0.00 2.29
151 152 1.079323 ACCATGGGATTTTCTGCCCTT 59.921 47.619 18.09 0.00 44.96 3.95
154 155 2.525105 TGGGATTTTCTGCCCTTACC 57.475 50.000 0.00 0.00 44.96 2.85
155 156 1.713647 TGGGATTTTCTGCCCTTACCA 59.286 47.619 0.00 0.00 44.96 3.25
211 241 3.181520 GGGTGAATCTCGTGTTTGAATCG 60.182 47.826 0.00 0.00 0.00 3.34
215 245 4.509970 TGAATCTCGTGTTTGAATCGTTGT 59.490 37.500 0.00 0.00 0.00 3.32
217 247 2.542178 TCTCGTGTTTGAATCGTTGTGG 59.458 45.455 0.00 0.00 0.00 4.17
219 249 1.600013 CGTGTTTGAATCGTTGTGGGA 59.400 47.619 0.00 0.00 0.00 4.37
233 263 3.874383 TGTGGGATTTCTTGTCCTCAA 57.126 42.857 0.00 0.00 36.00 3.02
267 571 6.094325 ACTTGTTCTCCGTCTCTTCATACTAG 59.906 42.308 0.00 0.00 0.00 2.57
309 613 5.841957 ATAAAAGTGCAGATCATTCCCAC 57.158 39.130 0.00 0.00 0.00 4.61
317 621 5.126061 GTGCAGATCATTCCCACAGTAAAAT 59.874 40.000 0.00 0.00 0.00 1.82
370 674 4.023536 GTCACGTGGACCAAATACAACATT 60.024 41.667 17.00 0.00 40.83 2.71
371 675 5.179742 GTCACGTGGACCAAATACAACATTA 59.820 40.000 17.00 0.00 40.83 1.90
372 676 5.179742 TCACGTGGACCAAATACAACATTAC 59.820 40.000 17.00 0.00 0.00 1.89
373 677 5.180492 CACGTGGACCAAATACAACATTACT 59.820 40.000 7.95 0.00 0.00 2.24
374 678 5.410439 ACGTGGACCAAATACAACATTACTC 59.590 40.000 0.00 0.00 0.00 2.59
375 679 5.163794 CGTGGACCAAATACAACATTACTCC 60.164 44.000 0.00 0.00 0.00 3.85
376 680 5.124936 GTGGACCAAATACAACATTACTCCC 59.875 44.000 0.00 0.00 0.00 4.30
377 681 5.014755 TGGACCAAATACAACATTACTCCCT 59.985 40.000 0.00 0.00 0.00 4.20
378 682 5.589050 GGACCAAATACAACATTACTCCCTC 59.411 44.000 0.00 0.00 0.00 4.30
379 683 6.388619 ACCAAATACAACATTACTCCCTCT 57.611 37.500 0.00 0.00 0.00 3.69
380 684 6.180472 ACCAAATACAACATTACTCCCTCTG 58.820 40.000 0.00 0.00 0.00 3.35
381 685 6.180472 CCAAATACAACATTACTCCCTCTGT 58.820 40.000 0.00 0.00 0.00 3.41
382 686 6.316390 CCAAATACAACATTACTCCCTCTGTC 59.684 42.308 0.00 0.00 0.00 3.51
383 687 6.875972 AATACAACATTACTCCCTCTGTCT 57.124 37.500 0.00 0.00 0.00 3.41
384 688 6.875972 ATACAACATTACTCCCTCTGTCTT 57.124 37.500 0.00 0.00 0.00 3.01
385 689 4.899502 ACAACATTACTCCCTCTGTCTTG 58.100 43.478 0.00 0.00 0.00 3.02
386 690 4.256920 CAACATTACTCCCTCTGTCTTGG 58.743 47.826 0.00 0.00 0.00 3.61
387 691 3.521727 ACATTACTCCCTCTGTCTTGGT 58.478 45.455 0.00 0.00 0.00 3.67
388 692 3.261897 ACATTACTCCCTCTGTCTTGGTG 59.738 47.826 0.00 0.00 0.00 4.17
389 693 1.267121 TACTCCCTCTGTCTTGGTGC 58.733 55.000 0.00 0.00 0.00 5.01
390 694 0.764369 ACTCCCTCTGTCTTGGTGCA 60.764 55.000 0.00 0.00 0.00 4.57
391 695 0.617413 CTCCCTCTGTCTTGGTGCAT 59.383 55.000 0.00 0.00 0.00 3.96
392 696 1.004044 CTCCCTCTGTCTTGGTGCATT 59.996 52.381 0.00 0.00 0.00 3.56
393 697 2.237143 CTCCCTCTGTCTTGGTGCATTA 59.763 50.000 0.00 0.00 0.00 1.90
394 698 2.237143 TCCCTCTGTCTTGGTGCATTAG 59.763 50.000 0.00 0.00 0.00 1.73
395 699 2.026822 CCCTCTGTCTTGGTGCATTAGT 60.027 50.000 0.00 0.00 0.00 2.24
396 700 3.197766 CCCTCTGTCTTGGTGCATTAGTA 59.802 47.826 0.00 0.00 0.00 1.82
397 701 4.437239 CCTCTGTCTTGGTGCATTAGTAG 58.563 47.826 0.00 0.00 0.00 2.57
398 702 4.437239 CTCTGTCTTGGTGCATTAGTAGG 58.563 47.826 0.00 0.00 0.00 3.18
399 703 2.939103 CTGTCTTGGTGCATTAGTAGGC 59.061 50.000 0.00 0.00 0.00 3.93
400 704 2.304470 TGTCTTGGTGCATTAGTAGGCA 59.696 45.455 0.00 0.00 39.01 4.75
401 705 3.054434 TGTCTTGGTGCATTAGTAGGCAT 60.054 43.478 0.00 0.00 43.70 4.40
402 706 3.561725 GTCTTGGTGCATTAGTAGGCATC 59.438 47.826 0.00 2.71 43.70 3.91
403 707 3.455910 TCTTGGTGCATTAGTAGGCATCT 59.544 43.478 9.65 0.00 43.70 2.90
404 708 4.653801 TCTTGGTGCATTAGTAGGCATCTA 59.346 41.667 9.65 3.06 43.70 1.98
405 709 5.130311 TCTTGGTGCATTAGTAGGCATCTAA 59.870 40.000 9.65 4.43 43.70 2.10
406 710 4.703897 TGGTGCATTAGTAGGCATCTAAC 58.296 43.478 9.65 0.00 43.70 2.34
407 711 3.741344 GGTGCATTAGTAGGCATCTAACG 59.259 47.826 0.00 0.00 43.70 3.18
408 712 4.500887 GGTGCATTAGTAGGCATCTAACGA 60.501 45.833 0.00 0.00 43.70 3.85
409 713 5.047847 GTGCATTAGTAGGCATCTAACGAA 58.952 41.667 0.00 0.00 43.70 3.85
410 714 5.522460 GTGCATTAGTAGGCATCTAACGAAA 59.478 40.000 0.00 0.00 43.70 3.46
411 715 6.036735 GTGCATTAGTAGGCATCTAACGAAAA 59.963 38.462 0.00 0.00 43.70 2.29
412 716 6.765989 TGCATTAGTAGGCATCTAACGAAAAT 59.234 34.615 0.00 0.00 35.91 1.82
413 717 7.042051 TGCATTAGTAGGCATCTAACGAAAATC 60.042 37.037 0.00 0.00 35.91 2.17
414 718 7.042051 GCATTAGTAGGCATCTAACGAAAATCA 60.042 37.037 0.00 0.00 31.53 2.57
415 719 8.826710 CATTAGTAGGCATCTAACGAAAATCAA 58.173 33.333 0.00 0.00 31.53 2.57
416 720 8.780846 TTAGTAGGCATCTAACGAAAATCAAA 57.219 30.769 0.00 0.00 0.00 2.69
417 721 7.865706 AGTAGGCATCTAACGAAAATCAAAT 57.134 32.000 0.00 0.00 0.00 2.32
418 722 8.958119 AGTAGGCATCTAACGAAAATCAAATA 57.042 30.769 0.00 0.00 0.00 1.40
419 723 9.391006 AGTAGGCATCTAACGAAAATCAAATAA 57.609 29.630 0.00 0.00 0.00 1.40
422 726 8.352942 AGGCATCTAACGAAAATCAAATAATCC 58.647 33.333 0.00 0.00 0.00 3.01
423 727 8.352942 GGCATCTAACGAAAATCAAATAATCCT 58.647 33.333 0.00 0.00 0.00 3.24
429 733 8.905103 AACGAAAATCAAATAATCCTAAACGG 57.095 30.769 0.00 0.00 0.00 4.44
438 742 3.834732 TCCTAAACGGAAGAGCTGC 57.165 52.632 0.00 0.00 39.40 5.25
439 743 0.973632 TCCTAAACGGAAGAGCTGCA 59.026 50.000 1.02 0.00 39.40 4.41
440 744 1.079503 CCTAAACGGAAGAGCTGCAC 58.920 55.000 1.02 0.00 33.16 4.57
441 745 0.716108 CTAAACGGAAGAGCTGCACG 59.284 55.000 1.02 0.80 0.00 5.34
442 746 0.669318 TAAACGGAAGAGCTGCACGG 60.669 55.000 1.02 0.00 0.00 4.94
443 747 2.377628 AAACGGAAGAGCTGCACGGA 62.378 55.000 1.02 0.00 0.00 4.69
444 748 2.811317 CGGAAGAGCTGCACGGAC 60.811 66.667 1.02 0.00 0.00 4.79
445 749 2.811317 GGAAGAGCTGCACGGACG 60.811 66.667 1.02 0.00 0.00 4.79
446 750 2.258591 GAAGAGCTGCACGGACGA 59.741 61.111 1.02 0.00 0.00 4.20
447 751 2.049063 AAGAGCTGCACGGACGAC 60.049 61.111 1.02 0.00 0.00 4.34
448 752 2.749110 GAAGAGCTGCACGGACGACA 62.749 60.000 1.02 0.00 0.00 4.35
449 753 3.106407 GAGCTGCACGGACGACAC 61.106 66.667 1.02 0.00 0.00 3.67
450 754 3.559657 GAGCTGCACGGACGACACT 62.560 63.158 1.02 0.00 0.00 3.55
451 755 2.196382 GAGCTGCACGGACGACACTA 62.196 60.000 1.02 0.00 0.00 2.74
452 756 1.801913 GCTGCACGGACGACACTAG 60.802 63.158 0.00 0.00 0.00 2.57
453 757 1.579932 CTGCACGGACGACACTAGT 59.420 57.895 0.00 0.00 0.00 2.57
454 758 0.454620 CTGCACGGACGACACTAGTC 60.455 60.000 0.00 0.00 41.46 2.59
460 764 2.264124 GACGACACTAGTCCAGCCA 58.736 57.895 0.00 0.00 41.87 4.75
461 765 0.601558 GACGACACTAGTCCAGCCAA 59.398 55.000 0.00 0.00 41.87 4.52
462 766 1.000506 GACGACACTAGTCCAGCCAAA 59.999 52.381 0.00 0.00 41.87 3.28
463 767 1.414919 ACGACACTAGTCCAGCCAAAA 59.585 47.619 0.00 0.00 41.87 2.44
464 768 1.798813 CGACACTAGTCCAGCCAAAAC 59.201 52.381 0.00 0.00 41.87 2.43
465 769 2.805295 CGACACTAGTCCAGCCAAAACA 60.805 50.000 0.00 0.00 41.87 2.83
466 770 3.412386 GACACTAGTCCAGCCAAAACAT 58.588 45.455 0.00 0.00 38.89 2.71
467 771 3.149196 ACACTAGTCCAGCCAAAACATG 58.851 45.455 0.00 0.00 0.00 3.21
468 772 2.095059 CACTAGTCCAGCCAAAACATGC 60.095 50.000 0.00 0.00 0.00 4.06
469 773 2.161855 CTAGTCCAGCCAAAACATGCA 58.838 47.619 0.00 0.00 0.00 3.96
470 774 0.675633 AGTCCAGCCAAAACATGCAC 59.324 50.000 0.00 0.00 0.00 4.57
471 775 0.664166 GTCCAGCCAAAACATGCACG 60.664 55.000 0.00 0.00 0.00 5.34
472 776 0.821301 TCCAGCCAAAACATGCACGA 60.821 50.000 0.00 0.00 0.00 4.35
473 777 0.664166 CCAGCCAAAACATGCACGAC 60.664 55.000 0.00 0.00 0.00 4.34
474 778 0.030504 CAGCCAAAACATGCACGACA 59.969 50.000 0.00 0.00 0.00 4.35
475 779 0.961019 AGCCAAAACATGCACGACAT 59.039 45.000 0.00 0.00 40.66 3.06
492 796 3.726144 TGCCCATCGCACCATCCA 61.726 61.111 0.00 0.00 44.64 3.41
493 797 2.203394 GCCCATCGCACCATCCAT 60.203 61.111 0.00 0.00 37.47 3.41
494 798 1.829533 GCCCATCGCACCATCCATT 60.830 57.895 0.00 0.00 37.47 3.16
495 799 1.394266 GCCCATCGCACCATCCATTT 61.394 55.000 0.00 0.00 37.47 2.32
496 800 0.386476 CCCATCGCACCATCCATTTG 59.614 55.000 0.00 0.00 0.00 2.32
497 801 0.249155 CCATCGCACCATCCATTTGC 60.249 55.000 0.00 0.00 0.00 3.68
498 802 0.742505 CATCGCACCATCCATTTGCT 59.257 50.000 0.00 0.00 33.90 3.91
499 803 1.948834 CATCGCACCATCCATTTGCTA 59.051 47.619 0.00 0.00 33.90 3.49
500 804 1.667236 TCGCACCATCCATTTGCTAG 58.333 50.000 0.00 0.00 33.90 3.42
501 805 0.029834 CGCACCATCCATTTGCTAGC 59.970 55.000 8.10 8.10 33.90 3.42
502 806 0.386838 GCACCATCCATTTGCTAGCC 59.613 55.000 13.29 0.00 33.26 3.93
503 807 2.025863 GCACCATCCATTTGCTAGCCT 61.026 52.381 13.29 0.00 33.26 4.58
504 808 2.749466 GCACCATCCATTTGCTAGCCTA 60.749 50.000 13.29 0.00 33.26 3.93
505 809 3.144506 CACCATCCATTTGCTAGCCTAG 58.855 50.000 13.29 0.00 0.00 3.02
506 810 3.048600 ACCATCCATTTGCTAGCCTAGA 58.951 45.455 13.29 2.34 0.00 2.43
507 811 3.181450 ACCATCCATTTGCTAGCCTAGAC 60.181 47.826 13.29 0.00 0.00 2.59
508 812 3.181451 CCATCCATTTGCTAGCCTAGACA 60.181 47.826 13.29 0.00 0.00 3.41
509 813 3.827008 TCCATTTGCTAGCCTAGACAG 57.173 47.619 13.29 0.00 0.00 3.51
510 814 2.158900 TCCATTTGCTAGCCTAGACAGC 60.159 50.000 13.29 0.00 35.82 4.40
511 815 2.420547 CCATTTGCTAGCCTAGACAGCA 60.421 50.000 13.29 8.31 43.28 4.41
512 816 2.680312 TTTGCTAGCCTAGACAGCAG 57.320 50.000 13.29 0.00 45.39 4.24
513 817 0.176680 TTGCTAGCCTAGACAGCAGC 59.823 55.000 13.29 8.87 45.39 5.25
514 818 0.972471 TGCTAGCCTAGACAGCAGCA 60.972 55.000 13.29 9.41 40.26 4.41
515 819 0.392336 GCTAGCCTAGACAGCAGCAT 59.608 55.000 2.29 0.00 35.68 3.79
516 820 1.873069 GCTAGCCTAGACAGCAGCATG 60.873 57.143 2.29 0.00 35.68 4.06
529 833 0.585357 CAGCATGCGGTGAGATTAGC 59.415 55.000 13.01 0.00 43.56 3.09
530 834 0.467384 AGCATGCGGTGAGATTAGCT 59.533 50.000 13.01 0.00 0.00 3.32
531 835 0.585357 GCATGCGGTGAGATTAGCTG 59.415 55.000 0.00 0.00 0.00 4.24
532 836 1.945387 CATGCGGTGAGATTAGCTGT 58.055 50.000 0.00 0.00 0.00 4.40
533 837 1.863454 CATGCGGTGAGATTAGCTGTC 59.137 52.381 0.00 0.00 0.00 3.51
534 838 0.179137 TGCGGTGAGATTAGCTGTCG 60.179 55.000 0.00 0.00 0.00 4.35
535 839 0.179134 GCGGTGAGATTAGCTGTCGT 60.179 55.000 0.00 0.00 0.00 4.34
536 840 1.550065 CGGTGAGATTAGCTGTCGTG 58.450 55.000 0.00 0.00 0.00 4.35
537 841 1.281899 GGTGAGATTAGCTGTCGTGC 58.718 55.000 0.00 0.00 0.00 5.34
538 842 1.404181 GGTGAGATTAGCTGTCGTGCA 60.404 52.381 0.00 0.00 34.99 4.57
539 843 2.544685 GTGAGATTAGCTGTCGTGCAT 58.455 47.619 0.00 0.00 34.99 3.96
540 844 2.283617 GTGAGATTAGCTGTCGTGCATG 59.716 50.000 0.00 0.00 34.99 4.06
541 845 2.094026 TGAGATTAGCTGTCGTGCATGT 60.094 45.455 5.68 0.00 34.99 3.21
542 846 2.274437 AGATTAGCTGTCGTGCATGTG 58.726 47.619 5.68 0.00 34.99 3.21
543 847 2.002586 GATTAGCTGTCGTGCATGTGT 58.997 47.619 5.68 0.00 34.99 3.72
544 848 1.428448 TTAGCTGTCGTGCATGTGTC 58.572 50.000 5.68 0.00 34.99 3.67
545 849 0.732538 TAGCTGTCGTGCATGTGTCG 60.733 55.000 5.68 0.00 34.99 4.35
546 850 2.310233 GCTGTCGTGCATGTGTCGT 61.310 57.895 5.68 0.00 0.00 4.34
547 851 1.831389 GCTGTCGTGCATGTGTCGTT 61.831 55.000 5.68 0.00 0.00 3.85
548 852 0.161658 CTGTCGTGCATGTGTCGTTC 59.838 55.000 5.68 0.00 0.00 3.95
549 853 0.528684 TGTCGTGCATGTGTCGTTCA 60.529 50.000 5.68 0.00 0.00 3.18
550 854 0.161658 GTCGTGCATGTGTCGTTCAG 59.838 55.000 5.68 0.00 0.00 3.02
551 855 1.154599 CGTGCATGTGTCGTTCAGC 60.155 57.895 0.00 0.00 0.00 4.26
552 856 1.830368 CGTGCATGTGTCGTTCAGCA 61.830 55.000 0.00 0.00 0.00 4.41
553 857 0.307453 GTGCATGTGTCGTTCAGCAA 59.693 50.000 0.00 0.00 33.37 3.91
554 858 1.020437 TGCATGTGTCGTTCAGCAAA 58.980 45.000 0.00 0.00 0.00 3.68
555 859 1.403323 TGCATGTGTCGTTCAGCAAAA 59.597 42.857 0.00 0.00 0.00 2.44
556 860 1.780860 GCATGTGTCGTTCAGCAAAAC 59.219 47.619 0.00 0.00 0.00 2.43
562 866 3.038472 CGTTCAGCAAAACGTCGTC 57.962 52.632 13.56 0.00 45.24 4.20
563 867 0.382636 CGTTCAGCAAAACGTCGTCC 60.383 55.000 13.56 0.00 45.24 4.79
564 868 0.382636 GTTCAGCAAAACGTCGTCCG 60.383 55.000 0.00 0.00 44.03 4.79
565 869 2.096481 TTCAGCAAAACGTCGTCCGC 62.096 55.000 0.00 1.67 41.42 5.54
566 870 3.698463 AGCAAAACGTCGTCCGCG 61.698 61.111 0.00 0.00 41.42 6.46
567 871 3.694394 GCAAAACGTCGTCCGCGA 61.694 61.111 8.23 0.00 45.79 5.87
576 880 1.503542 TCGTCCGCGAAGTACTTCC 59.496 57.895 26.12 18.37 44.92 3.46
577 881 1.866496 CGTCCGCGAAGTACTTCCG 60.866 63.158 26.12 26.28 41.33 4.30
578 882 1.503542 GTCCGCGAAGTACTTCCGA 59.496 57.895 31.05 21.39 36.25 4.55
579 883 0.109597 GTCCGCGAAGTACTTCCGAA 60.110 55.000 31.05 19.05 36.25 4.30
580 884 0.813184 TCCGCGAAGTACTTCCGAAT 59.187 50.000 31.05 5.32 36.25 3.34
581 885 1.197910 CCGCGAAGTACTTCCGAATC 58.802 55.000 31.05 16.53 36.25 2.52
582 886 1.197910 CGCGAAGTACTTCCGAATCC 58.802 55.000 28.03 12.68 36.25 3.01
583 887 1.568606 GCGAAGTACTTCCGAATCCC 58.431 55.000 26.12 3.62 36.27 3.85
584 888 1.134907 GCGAAGTACTTCCGAATCCCA 60.135 52.381 26.12 0.00 36.27 4.37
585 889 2.675889 GCGAAGTACTTCCGAATCCCAA 60.676 50.000 26.12 0.00 36.27 4.12
586 890 3.592059 CGAAGTACTTCCGAATCCCAAA 58.408 45.455 26.12 0.00 36.27 3.28
587 891 3.998341 CGAAGTACTTCCGAATCCCAAAA 59.002 43.478 26.12 0.00 36.27 2.44
588 892 4.092968 CGAAGTACTTCCGAATCCCAAAAG 59.907 45.833 26.12 6.92 36.27 2.27
589 893 3.951663 AGTACTTCCGAATCCCAAAAGG 58.048 45.455 0.00 0.00 0.00 3.11
590 894 1.545841 ACTTCCGAATCCCAAAAGGC 58.454 50.000 0.00 0.00 34.51 4.35
591 895 1.075536 ACTTCCGAATCCCAAAAGGCT 59.924 47.619 0.00 0.00 34.51 4.58
592 896 2.307686 ACTTCCGAATCCCAAAAGGCTA 59.692 45.455 0.00 0.00 34.51 3.93
593 897 3.245122 ACTTCCGAATCCCAAAAGGCTAA 60.245 43.478 0.00 0.00 34.51 3.09
594 898 2.718563 TCCGAATCCCAAAAGGCTAAC 58.281 47.619 0.00 0.00 34.51 2.34
595 899 1.400494 CCGAATCCCAAAAGGCTAACG 59.600 52.381 0.00 0.00 34.51 3.18
596 900 2.352388 CGAATCCCAAAAGGCTAACGA 58.648 47.619 0.00 0.00 34.51 3.85
597 901 2.745281 CGAATCCCAAAAGGCTAACGAA 59.255 45.455 0.00 0.00 34.51 3.85
598 902 3.189702 CGAATCCCAAAAGGCTAACGAAA 59.810 43.478 0.00 0.00 34.51 3.46
599 903 4.320641 CGAATCCCAAAAGGCTAACGAAAA 60.321 41.667 0.00 0.00 34.51 2.29
600 904 5.621329 CGAATCCCAAAAGGCTAACGAAAAT 60.621 40.000 0.00 0.00 34.51 1.82
601 905 4.776795 TCCCAAAAGGCTAACGAAAATC 57.223 40.909 0.00 0.00 34.51 2.17
602 906 4.145807 TCCCAAAAGGCTAACGAAAATCA 58.854 39.130 0.00 0.00 34.51 2.57
603 907 4.585162 TCCCAAAAGGCTAACGAAAATCAA 59.415 37.500 0.00 0.00 34.51 2.57
604 908 5.069251 TCCCAAAAGGCTAACGAAAATCAAA 59.931 36.000 0.00 0.00 34.51 2.69
605 909 5.405269 CCCAAAAGGCTAACGAAAATCAAAG 59.595 40.000 0.00 0.00 0.00 2.77
606 910 5.983118 CCAAAAGGCTAACGAAAATCAAAGT 59.017 36.000 0.00 0.00 0.00 2.66
615 919 8.163516 GCTAACGAAAATCAAAGTAGAGAGTTC 58.836 37.037 0.00 0.00 0.00 3.01
621 925 4.238761 TCAAAGTAGAGAGTTCGTGTGG 57.761 45.455 0.00 0.00 0.00 4.17
678 985 2.292916 GCTTTTTGTGCGGCGACAC 61.293 57.895 21.73 21.73 41.10 3.67
685 992 2.126071 TGCGGCGACACTCTAAGC 60.126 61.111 12.98 0.00 0.00 3.09
686 993 2.886124 GCGGCGACACTCTAAGCC 60.886 66.667 12.98 0.00 45.67 4.35
687 994 2.885861 CGGCGACACTCTAAGCCT 59.114 61.111 0.00 0.00 46.85 4.58
688 995 1.215647 CGGCGACACTCTAAGCCTT 59.784 57.895 0.00 0.00 46.85 4.35
756 1063 3.616721 AGTCCCTCGTTGTGCGCT 61.617 61.111 9.73 0.00 41.07 5.92
788 1096 2.155279 GTGAACTGCTCCCTTTTCCTC 58.845 52.381 0.00 0.00 0.00 3.71
791 1099 2.047274 TGCTCCCTTTTCCTCGCG 60.047 61.111 0.00 0.00 0.00 5.87
793 1101 2.820037 CTCCCTTTTCCTCGCGGC 60.820 66.667 6.13 0.00 0.00 6.53
794 1102 4.404098 TCCCTTTTCCTCGCGGCC 62.404 66.667 6.13 0.00 0.00 6.13
796 1104 2.582436 CCTTTTCCTCGCGGCCTA 59.418 61.111 6.13 0.00 0.00 3.93
797 1105 1.521681 CCTTTTCCTCGCGGCCTAG 60.522 63.158 6.13 0.00 0.00 3.02
798 1106 2.125269 TTTTCCTCGCGGCCTAGC 60.125 61.111 6.13 0.00 0.00 3.42
800 1108 2.852495 TTTTCCTCGCGGCCTAGCTG 62.852 60.000 6.13 0.00 38.08 4.24
803 1111 3.610669 CTCGCGGCCTAGCTGGAT 61.611 66.667 6.13 0.00 38.35 3.41
804 1112 3.565910 CTCGCGGCCTAGCTGGATC 62.566 68.421 6.13 0.00 38.35 3.36
805 1113 3.610669 CGCGGCCTAGCTGGATCT 61.611 66.667 0.00 0.00 38.35 2.75
806 1114 2.341911 GCGGCCTAGCTGGATCTC 59.658 66.667 0.00 0.00 38.35 2.75
807 1115 2.206536 GCGGCCTAGCTGGATCTCT 61.207 63.158 0.00 0.00 38.35 3.10
808 1116 1.963679 CGGCCTAGCTGGATCTCTC 59.036 63.158 0.00 0.00 38.35 3.20
856 1164 0.608035 GTGGCCCACAGGAAATTCGA 60.608 55.000 9.55 0.00 34.08 3.71
857 1165 0.608035 TGGCCCACAGGAAATTCGAC 60.608 55.000 0.00 0.00 33.47 4.20
979 1289 3.024043 GCACAAACACTTGGCGCG 61.024 61.111 0.00 0.00 36.82 6.86
1012 1322 2.123854 CAGCCATGGCCATCTGCT 60.124 61.111 33.14 26.47 43.17 4.24
1596 1909 0.324368 TCACGCTCCCACTCACCTAT 60.324 55.000 0.00 0.00 0.00 2.57
2460 2904 1.984570 CTGGGAGGAGCAGACGGAA 60.985 63.158 0.00 0.00 0.00 4.30
2738 3182 7.708752 CGATCTCCTTACATCTTAGCTTCTTTT 59.291 37.037 0.00 0.00 0.00 2.27
2793 3237 5.461032 AGAGTGTTTACAGTGAAGAGAGG 57.539 43.478 0.00 0.00 0.00 3.69
2853 3297 1.668047 GCCTGCAGATTTGACAGCAAC 60.668 52.381 17.39 0.00 36.44 4.17
2879 3323 6.371548 GCCAAACAATCTCTTTTAATTTCCCC 59.628 38.462 0.00 0.00 0.00 4.81
2884 3328 9.778741 AACAATCTCTTTTAATTTCCCCTTTTC 57.221 29.630 0.00 0.00 0.00 2.29
2885 3329 9.159254 ACAATCTCTTTTAATTTCCCCTTTTCT 57.841 29.630 0.00 0.00 0.00 2.52
2886 3330 9.645059 CAATCTCTTTTAATTTCCCCTTTTCTC 57.355 33.333 0.00 0.00 0.00 2.87
2971 3415 1.764422 TCCATGGTGGAAGCCGAAA 59.236 52.632 12.58 0.00 45.00 3.46
3063 3507 3.399983 AGGTTTGTTATTGTGGGGTAGGT 59.600 43.478 0.00 0.00 0.00 3.08
3064 3508 4.140876 AGGTTTGTTATTGTGGGGTAGGTT 60.141 41.667 0.00 0.00 0.00 3.50
3125 3600 1.422531 CCTCTGCCTCAGCTTATCCT 58.577 55.000 0.00 0.00 40.80 3.24
3134 3609 1.210478 TCAGCTTATCCTGGTCAAGCC 59.790 52.381 22.51 11.21 44.57 4.35
3238 3724 0.877071 CTGTCCTTCATGGTGTGCAC 59.123 55.000 10.75 10.75 37.07 4.57
3246 3732 1.162698 CATGGTGTGCACTCTCCTTG 58.837 55.000 19.41 19.08 0.00 3.61
3319 3805 0.254178 GGCAGTGATGATGGAGTGGT 59.746 55.000 0.00 0.00 0.00 4.16
3320 3806 1.376543 GCAGTGATGATGGAGTGGTG 58.623 55.000 0.00 0.00 0.00 4.17
3321 3807 2.015588 GCAGTGATGATGGAGTGGTGG 61.016 57.143 0.00 0.00 0.00 4.61
3322 3808 1.280133 CAGTGATGATGGAGTGGTGGT 59.720 52.381 0.00 0.00 0.00 4.16
3323 3809 2.501316 CAGTGATGATGGAGTGGTGGTA 59.499 50.000 0.00 0.00 0.00 3.25
3343 3829 3.667497 ATGGTATCGGCACACAGATAG 57.333 47.619 0.00 0.00 30.86 2.08
3347 3833 2.160822 ATCGGCACACAGATAGCATC 57.839 50.000 0.00 0.00 0.00 3.91
3378 3864 4.019411 TCATGCTCTATGGAGTTTGGTGAA 60.019 41.667 8.00 0.00 41.38 3.18
3424 3910 2.350498 ACGGATTACAATTAGCACGCAC 59.650 45.455 0.00 0.00 0.00 5.34
3453 3939 1.817941 CAAGGCGTGGTATTCGGGG 60.818 63.158 0.00 0.00 0.00 5.73
3499 3985 6.607735 GTACTACTGTACTCCATCAGACTC 57.392 45.833 0.00 0.00 44.08 3.36
3500 3986 5.180810 ACTACTGTACTCCATCAGACTCA 57.819 43.478 0.00 0.00 35.84 3.41
3501 3987 4.944930 ACTACTGTACTCCATCAGACTCAC 59.055 45.833 0.00 0.00 35.84 3.51
3502 3988 3.093057 ACTGTACTCCATCAGACTCACC 58.907 50.000 0.00 0.00 35.84 4.02
3503 3989 3.092301 CTGTACTCCATCAGACTCACCA 58.908 50.000 0.00 0.00 34.02 4.17
3504 3990 3.703556 CTGTACTCCATCAGACTCACCAT 59.296 47.826 0.00 0.00 34.02 3.55
3505 3991 3.701542 TGTACTCCATCAGACTCACCATC 59.298 47.826 0.00 0.00 0.00 3.51
3525 4011 1.557099 CCACTCTACCAGTACAGGCA 58.443 55.000 3.83 0.00 32.21 4.75
3582 4068 2.557924 CCTTGGCACTGAAATACTTGCA 59.442 45.455 0.00 0.00 36.66 4.08
3583 4069 3.568538 CTTGGCACTGAAATACTTGCAC 58.431 45.455 0.00 0.00 36.66 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.630061 TCAAGATATTGCAACACATGTTCG 58.370 37.500 0.00 0.00 35.83 3.95
1 2 6.474427 CCATCAAGATATTGCAACACATGTTC 59.526 38.462 0.00 0.00 35.83 3.18
2 3 6.334989 CCATCAAGATATTGCAACACATGTT 58.665 36.000 0.00 0.00 39.12 2.71
5 6 5.202765 TCCCATCAAGATATTGCAACACAT 58.797 37.500 0.00 0.00 0.00 3.21
6 7 4.598022 TCCCATCAAGATATTGCAACACA 58.402 39.130 0.00 0.00 0.00 3.72
7 8 5.300034 TCATCCCATCAAGATATTGCAACAC 59.700 40.000 0.00 0.00 0.00 3.32
8 9 5.447757 TCATCCCATCAAGATATTGCAACA 58.552 37.500 0.00 0.00 0.00 3.33
9 10 6.395426 TTCATCCCATCAAGATATTGCAAC 57.605 37.500 0.00 0.00 0.00 4.17
10 11 6.209986 GGATTCATCCCATCAAGATATTGCAA 59.790 38.462 0.00 0.00 41.20 4.08
11 12 5.713389 GGATTCATCCCATCAAGATATTGCA 59.287 40.000 0.00 0.00 41.20 4.08
12 13 5.713389 TGGATTCATCCCATCAAGATATTGC 59.287 40.000 3.26 0.00 46.59 3.56
13 14 7.231925 TGTTGGATTCATCCCATCAAGATATTG 59.768 37.037 3.26 0.00 46.59 1.90
14 15 7.299896 TGTTGGATTCATCCCATCAAGATATT 58.700 34.615 3.26 0.00 46.59 1.28
15 16 6.855667 TGTTGGATTCATCCCATCAAGATAT 58.144 36.000 3.26 0.00 46.59 1.63
16 17 6.264771 TGTTGGATTCATCCCATCAAGATA 57.735 37.500 3.26 0.00 46.59 1.98
17 18 5.133383 TGTTGGATTCATCCCATCAAGAT 57.867 39.130 3.26 0.00 46.59 2.40
18 19 4.589647 TGTTGGATTCATCCCATCAAGA 57.410 40.909 3.26 0.00 46.59 3.02
19 20 5.597182 AGAATGTTGGATTCATCCCATCAAG 59.403 40.000 3.26 0.00 46.59 3.02
20 21 5.521696 AGAATGTTGGATTCATCCCATCAA 58.478 37.500 3.26 0.00 46.59 2.57
21 22 5.133383 AGAATGTTGGATTCATCCCATCA 57.867 39.130 3.26 0.00 46.59 3.07
22 23 6.547141 TGTAAGAATGTTGGATTCATCCCATC 59.453 38.462 3.26 0.00 46.59 3.51
23 24 6.434302 TGTAAGAATGTTGGATTCATCCCAT 58.566 36.000 3.26 0.00 46.59 4.00
24 25 5.825532 TGTAAGAATGTTGGATTCATCCCA 58.174 37.500 3.26 0.00 46.59 4.37
25 26 6.773976 TTGTAAGAATGTTGGATTCATCCC 57.226 37.500 3.26 0.00 46.59 3.85
27 28 8.689972 AGGAATTGTAAGAATGTTGGATTCATC 58.310 33.333 0.00 0.00 0.00 2.92
28 29 8.472413 CAGGAATTGTAAGAATGTTGGATTCAT 58.528 33.333 0.00 0.00 0.00 2.57
29 30 7.093814 CCAGGAATTGTAAGAATGTTGGATTCA 60.094 37.037 0.00 0.00 0.00 2.57
30 31 7.122650 TCCAGGAATTGTAAGAATGTTGGATTC 59.877 37.037 0.00 0.00 0.00 2.52
31 32 6.953520 TCCAGGAATTGTAAGAATGTTGGATT 59.046 34.615 0.00 0.00 0.00 3.01
32 33 6.493166 TCCAGGAATTGTAAGAATGTTGGAT 58.507 36.000 0.00 0.00 0.00 3.41
33 34 5.886609 TCCAGGAATTGTAAGAATGTTGGA 58.113 37.500 0.00 0.00 0.00 3.53
34 35 6.780457 ATCCAGGAATTGTAAGAATGTTGG 57.220 37.500 0.00 0.00 0.00 3.77
35 36 8.526147 AGAAATCCAGGAATTGTAAGAATGTTG 58.474 33.333 0.00 0.00 0.00 3.33
36 37 8.655935 AGAAATCCAGGAATTGTAAGAATGTT 57.344 30.769 0.00 0.00 0.00 2.71
46 47 1.678101 GGGCGAGAAATCCAGGAATTG 59.322 52.381 0.00 0.00 0.00 2.32
47 48 1.566231 AGGGCGAGAAATCCAGGAATT 59.434 47.619 0.00 0.00 0.00 2.17
53 54 2.939640 GCTTGTTAGGGCGAGAAATCCA 60.940 50.000 0.00 0.00 0.00 3.41
70 71 4.053983 ACATGTGTCTGCTATATCGCTTG 58.946 43.478 0.00 0.00 0.00 4.01
74 75 7.169813 ACATTACAACATGTGTCTGCTATATCG 59.830 37.037 0.00 0.00 41.98 2.92
94 95 4.028993 TCTCCCCTGTCCAAAACATTAC 57.971 45.455 0.00 0.00 37.23 1.89
133 134 2.695147 GGTAAGGGCAGAAAATCCCATG 59.305 50.000 0.00 0.00 45.07 3.66
134 135 2.314549 TGGTAAGGGCAGAAAATCCCAT 59.685 45.455 0.00 0.00 45.07 4.00
136 137 2.100197 GTGGTAAGGGCAGAAAATCCC 58.900 52.381 0.00 0.00 42.94 3.85
137 138 3.017442 GAGTGGTAAGGGCAGAAAATCC 58.983 50.000 0.00 0.00 0.00 3.01
144 145 3.627395 TTATGTGAGTGGTAAGGGCAG 57.373 47.619 0.00 0.00 0.00 4.85
151 152 5.483937 AGAGGTGTTCATTATGTGAGTGGTA 59.516 40.000 0.00 0.00 38.29 3.25
154 155 5.482006 TCAGAGGTGTTCATTATGTGAGTG 58.518 41.667 0.00 0.00 38.29 3.51
155 156 5.745312 TCAGAGGTGTTCATTATGTGAGT 57.255 39.130 0.00 0.00 38.29 3.41
211 241 3.486383 TGAGGACAAGAAATCCCACAAC 58.514 45.455 0.00 0.00 36.86 3.32
215 245 3.117322 TGGTTTGAGGACAAGAAATCCCA 60.117 43.478 0.00 0.00 36.86 4.37
217 247 5.301805 TCTTTGGTTTGAGGACAAGAAATCC 59.698 40.000 0.00 0.00 37.32 3.01
219 249 6.381133 AGTTCTTTGGTTTGAGGACAAGAAAT 59.619 34.615 0.00 0.00 37.32 2.17
309 613 5.046529 CGGGAGAGATCACTGATTTTACTG 58.953 45.833 0.00 0.00 0.00 2.74
317 621 0.820226 CTTGCGGGAGAGATCACTGA 59.180 55.000 0.00 0.00 0.00 3.41
370 674 1.267121 GCACCAAGACAGAGGGAGTA 58.733 55.000 0.00 0.00 0.00 2.59
371 675 0.764369 TGCACCAAGACAGAGGGAGT 60.764 55.000 0.00 0.00 0.00 3.85
372 676 0.617413 ATGCACCAAGACAGAGGGAG 59.383 55.000 0.00 0.00 0.00 4.30
373 677 1.067295 AATGCACCAAGACAGAGGGA 58.933 50.000 0.00 0.00 0.00 4.20
374 678 2.026822 ACTAATGCACCAAGACAGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
375 679 3.340814 ACTAATGCACCAAGACAGAGG 57.659 47.619 0.00 0.00 0.00 3.69
376 680 4.437239 CCTACTAATGCACCAAGACAGAG 58.563 47.826 0.00 0.00 0.00 3.35
377 681 3.369471 GCCTACTAATGCACCAAGACAGA 60.369 47.826 0.00 0.00 0.00 3.41
378 682 2.939103 GCCTACTAATGCACCAAGACAG 59.061 50.000 0.00 0.00 0.00 3.51
379 683 2.304470 TGCCTACTAATGCACCAAGACA 59.696 45.455 0.00 0.00 31.31 3.41
380 684 2.985896 TGCCTACTAATGCACCAAGAC 58.014 47.619 0.00 0.00 31.31 3.01
381 685 3.455910 AGATGCCTACTAATGCACCAAGA 59.544 43.478 0.00 0.00 40.88 3.02
382 686 3.813443 AGATGCCTACTAATGCACCAAG 58.187 45.455 0.00 0.00 40.88 3.61
383 687 3.931907 AGATGCCTACTAATGCACCAA 57.068 42.857 0.00 0.00 40.88 3.67
384 688 4.703897 GTTAGATGCCTACTAATGCACCA 58.296 43.478 0.00 0.00 40.88 4.17
385 689 3.741344 CGTTAGATGCCTACTAATGCACC 59.259 47.826 0.00 0.00 40.88 5.01
386 690 4.617959 TCGTTAGATGCCTACTAATGCAC 58.382 43.478 0.00 0.00 40.88 4.57
387 691 4.929819 TCGTTAGATGCCTACTAATGCA 57.070 40.909 0.00 0.00 42.52 3.96
388 692 6.598753 TTTTCGTTAGATGCCTACTAATGC 57.401 37.500 0.00 0.00 37.01 3.56
389 693 8.365399 TGATTTTCGTTAGATGCCTACTAATG 57.635 34.615 0.00 0.00 37.86 1.90
390 694 8.958119 TTGATTTTCGTTAGATGCCTACTAAT 57.042 30.769 0.00 0.00 33.41 1.73
391 695 8.780846 TTTGATTTTCGTTAGATGCCTACTAA 57.219 30.769 0.00 0.00 0.00 2.24
392 696 8.958119 ATTTGATTTTCGTTAGATGCCTACTA 57.042 30.769 0.00 0.00 0.00 1.82
393 697 7.865706 ATTTGATTTTCGTTAGATGCCTACT 57.134 32.000 0.00 0.00 0.00 2.57
396 700 8.352942 GGATTATTTGATTTTCGTTAGATGCCT 58.647 33.333 0.00 0.00 0.00 4.75
397 701 8.352942 AGGATTATTTGATTTTCGTTAGATGCC 58.647 33.333 0.00 0.00 0.00 4.40
403 707 9.991388 CCGTTTAGGATTATTTGATTTTCGTTA 57.009 29.630 0.00 0.00 45.00 3.18
404 708 8.732531 TCCGTTTAGGATTATTTGATTTTCGTT 58.267 29.630 0.00 0.00 45.98 3.85
405 709 8.271312 TCCGTTTAGGATTATTTGATTTTCGT 57.729 30.769 0.00 0.00 45.98 3.85
421 725 1.079503 GTGCAGCTCTTCCGTTTAGG 58.920 55.000 0.00 0.00 42.97 2.69
422 726 0.716108 CGTGCAGCTCTTCCGTTTAG 59.284 55.000 0.00 0.00 0.00 1.85
423 727 0.669318 CCGTGCAGCTCTTCCGTTTA 60.669 55.000 0.00 0.00 0.00 2.01
424 728 1.961277 CCGTGCAGCTCTTCCGTTT 60.961 57.895 0.00 0.00 0.00 3.60
425 729 2.357517 CCGTGCAGCTCTTCCGTT 60.358 61.111 0.00 0.00 0.00 4.44
426 730 3.303135 TCCGTGCAGCTCTTCCGT 61.303 61.111 0.00 0.00 0.00 4.69
427 731 2.811317 GTCCGTGCAGCTCTTCCG 60.811 66.667 0.00 0.00 0.00 4.30
428 732 2.811317 CGTCCGTGCAGCTCTTCC 60.811 66.667 0.00 0.00 0.00 3.46
429 733 2.089349 GTCGTCCGTGCAGCTCTTC 61.089 63.158 0.00 0.00 0.00 2.87
430 734 2.049063 GTCGTCCGTGCAGCTCTT 60.049 61.111 0.00 0.00 0.00 2.85
431 735 3.295273 TGTCGTCCGTGCAGCTCT 61.295 61.111 0.00 0.00 0.00 4.09
432 736 2.196382 TAGTGTCGTCCGTGCAGCTC 62.196 60.000 0.00 0.00 0.00 4.09
433 737 2.201436 CTAGTGTCGTCCGTGCAGCT 62.201 60.000 0.00 0.00 0.00 4.24
434 738 1.801913 CTAGTGTCGTCCGTGCAGC 60.802 63.158 0.00 0.00 0.00 5.25
435 739 0.454620 GACTAGTGTCGTCCGTGCAG 60.455 60.000 0.00 0.00 33.15 4.41
436 740 1.577922 GACTAGTGTCGTCCGTGCA 59.422 57.895 0.00 0.00 33.15 4.57
437 741 1.154073 GGACTAGTGTCGTCCGTGC 60.154 63.158 0.00 0.00 43.79 5.34
442 746 0.601558 TTGGCTGGACTAGTGTCGTC 59.398 55.000 0.00 0.00 43.79 4.20
443 747 1.045407 TTTGGCTGGACTAGTGTCGT 58.955 50.000 0.00 0.00 43.79 4.34
444 748 1.798813 GTTTTGGCTGGACTAGTGTCG 59.201 52.381 0.00 0.00 43.79 4.35
445 749 2.846193 TGTTTTGGCTGGACTAGTGTC 58.154 47.619 0.00 0.00 42.22 3.67
446 750 3.149196 CATGTTTTGGCTGGACTAGTGT 58.851 45.455 0.00 0.00 0.00 3.55
447 751 2.095059 GCATGTTTTGGCTGGACTAGTG 60.095 50.000 0.00 0.00 0.00 2.74
448 752 2.162681 GCATGTTTTGGCTGGACTAGT 58.837 47.619 0.00 0.00 0.00 2.57
449 753 2.095059 GTGCATGTTTTGGCTGGACTAG 60.095 50.000 0.00 0.00 0.00 2.57
450 754 1.885887 GTGCATGTTTTGGCTGGACTA 59.114 47.619 0.00 0.00 0.00 2.59
451 755 0.675633 GTGCATGTTTTGGCTGGACT 59.324 50.000 0.00 0.00 0.00 3.85
452 756 0.664166 CGTGCATGTTTTGGCTGGAC 60.664 55.000 0.00 0.00 0.00 4.02
453 757 0.821301 TCGTGCATGTTTTGGCTGGA 60.821 50.000 5.68 0.00 0.00 3.86
454 758 0.664166 GTCGTGCATGTTTTGGCTGG 60.664 55.000 5.68 0.00 0.00 4.85
455 759 0.030504 TGTCGTGCATGTTTTGGCTG 59.969 50.000 5.68 0.00 0.00 4.85
456 760 0.961019 ATGTCGTGCATGTTTTGGCT 59.039 45.000 5.68 0.00 36.26 4.75
457 761 3.495124 ATGTCGTGCATGTTTTGGC 57.505 47.368 5.68 0.00 36.26 4.52
476 780 1.394266 AAATGGATGGTGCGATGGGC 61.394 55.000 0.00 0.00 43.96 5.36
477 781 0.386476 CAAATGGATGGTGCGATGGG 59.614 55.000 0.00 0.00 0.00 4.00
478 782 0.249155 GCAAATGGATGGTGCGATGG 60.249 55.000 0.00 0.00 0.00 3.51
479 783 0.742505 AGCAAATGGATGGTGCGATG 59.257 50.000 0.00 0.00 43.16 3.84
480 784 2.224606 CTAGCAAATGGATGGTGCGAT 58.775 47.619 0.00 0.00 43.16 4.58
481 785 1.667236 CTAGCAAATGGATGGTGCGA 58.333 50.000 0.00 0.00 43.16 5.10
482 786 0.029834 GCTAGCAAATGGATGGTGCG 59.970 55.000 10.63 0.00 43.16 5.34
483 787 0.386838 GGCTAGCAAATGGATGGTGC 59.613 55.000 18.24 0.00 38.59 5.01
484 788 2.062971 AGGCTAGCAAATGGATGGTG 57.937 50.000 18.24 0.00 32.43 4.17
485 789 3.048600 TCTAGGCTAGCAAATGGATGGT 58.951 45.455 18.24 0.00 34.89 3.55
486 790 3.181451 TGTCTAGGCTAGCAAATGGATGG 60.181 47.826 18.24 0.00 0.00 3.51
487 791 4.063689 CTGTCTAGGCTAGCAAATGGATG 58.936 47.826 18.24 3.55 0.00 3.51
488 792 3.495806 GCTGTCTAGGCTAGCAAATGGAT 60.496 47.826 18.24 0.00 37.40 3.41
489 793 2.158900 GCTGTCTAGGCTAGCAAATGGA 60.159 50.000 18.24 6.43 37.40 3.41
490 794 2.216898 GCTGTCTAGGCTAGCAAATGG 58.783 52.381 18.24 3.95 37.40 3.16
491 795 2.871022 CTGCTGTCTAGGCTAGCAAATG 59.129 50.000 18.24 7.71 45.73 2.32
492 796 2.744494 GCTGCTGTCTAGGCTAGCAAAT 60.744 50.000 18.24 4.22 45.73 2.32
493 797 1.406069 GCTGCTGTCTAGGCTAGCAAA 60.406 52.381 18.24 2.25 45.73 3.68
494 798 0.176680 GCTGCTGTCTAGGCTAGCAA 59.823 55.000 18.24 6.27 45.73 3.91
495 799 0.972471 TGCTGCTGTCTAGGCTAGCA 60.972 55.000 18.24 16.89 44.45 3.49
496 800 0.392336 ATGCTGCTGTCTAGGCTAGC 59.608 55.000 16.85 6.04 37.93 3.42
497 801 1.873069 GCATGCTGCTGTCTAGGCTAG 60.873 57.143 15.56 15.56 40.96 3.42
498 802 0.105593 GCATGCTGCTGTCTAGGCTA 59.894 55.000 11.37 0.00 40.96 3.93
499 803 1.153208 GCATGCTGCTGTCTAGGCT 60.153 57.895 11.37 0.00 40.96 4.58
500 804 2.532256 CGCATGCTGCTGTCTAGGC 61.532 63.158 17.13 0.00 42.25 3.93
501 805 1.886313 CCGCATGCTGCTGTCTAGG 60.886 63.158 17.13 1.80 42.25 3.02
502 806 1.153489 ACCGCATGCTGCTGTCTAG 60.153 57.895 17.13 0.00 35.99 2.43
503 807 1.448365 CACCGCATGCTGCTGTCTA 60.448 57.895 17.13 0.00 38.77 2.59
504 808 2.745100 CACCGCATGCTGCTGTCT 60.745 61.111 17.13 0.00 38.77 3.41
505 809 2.743538 TCACCGCATGCTGCTGTC 60.744 61.111 17.13 0.00 38.77 3.51
506 810 2.532465 ATCTCACCGCATGCTGCTGT 62.532 55.000 17.13 4.68 41.49 4.40
507 811 1.374343 AATCTCACCGCATGCTGCTG 61.374 55.000 17.13 10.24 42.25 4.41
508 812 0.178767 TAATCTCACCGCATGCTGCT 59.821 50.000 17.13 0.00 42.25 4.24
509 813 0.585357 CTAATCTCACCGCATGCTGC 59.415 55.000 17.13 0.00 40.69 5.25
510 814 0.585357 GCTAATCTCACCGCATGCTG 59.415 55.000 17.13 12.36 0.00 4.41
511 815 0.467384 AGCTAATCTCACCGCATGCT 59.533 50.000 17.13 0.00 0.00 3.79
512 816 0.585357 CAGCTAATCTCACCGCATGC 59.415 55.000 7.91 7.91 0.00 4.06
513 817 1.863454 GACAGCTAATCTCACCGCATG 59.137 52.381 0.00 0.00 0.00 4.06
514 818 1.536922 CGACAGCTAATCTCACCGCAT 60.537 52.381 0.00 0.00 0.00 4.73
515 819 0.179137 CGACAGCTAATCTCACCGCA 60.179 55.000 0.00 0.00 0.00 5.69
516 820 0.179134 ACGACAGCTAATCTCACCGC 60.179 55.000 0.00 0.00 0.00 5.68
517 821 1.550065 CACGACAGCTAATCTCACCG 58.450 55.000 0.00 0.00 0.00 4.94
518 822 1.281899 GCACGACAGCTAATCTCACC 58.718 55.000 0.00 0.00 0.00 4.02
519 823 1.996292 TGCACGACAGCTAATCTCAC 58.004 50.000 0.00 0.00 34.99 3.51
520 824 2.094026 ACATGCACGACAGCTAATCTCA 60.094 45.455 0.00 0.00 34.99 3.27
521 825 2.283617 CACATGCACGACAGCTAATCTC 59.716 50.000 0.00 0.00 34.99 2.75
522 826 2.274437 CACATGCACGACAGCTAATCT 58.726 47.619 0.00 0.00 34.99 2.40
523 827 2.002586 ACACATGCACGACAGCTAATC 58.997 47.619 0.00 0.00 34.99 1.75
524 828 2.002586 GACACATGCACGACAGCTAAT 58.997 47.619 0.00 0.00 34.99 1.73
525 829 1.428448 GACACATGCACGACAGCTAA 58.572 50.000 0.00 0.00 34.99 3.09
526 830 0.732538 CGACACATGCACGACAGCTA 60.733 55.000 0.00 0.00 34.99 3.32
527 831 2.023771 CGACACATGCACGACAGCT 61.024 57.895 0.00 0.00 34.99 4.24
528 832 1.831389 AACGACACATGCACGACAGC 61.831 55.000 12.34 0.00 0.00 4.40
529 833 0.161658 GAACGACACATGCACGACAG 59.838 55.000 12.34 0.00 0.00 3.51
530 834 0.528684 TGAACGACACATGCACGACA 60.529 50.000 12.34 9.28 0.00 4.35
531 835 0.161658 CTGAACGACACATGCACGAC 59.838 55.000 12.34 7.41 0.00 4.34
532 836 1.556591 GCTGAACGACACATGCACGA 61.557 55.000 12.34 0.00 0.00 4.35
533 837 1.154599 GCTGAACGACACATGCACG 60.155 57.895 0.00 0.00 0.00 5.34
534 838 0.307453 TTGCTGAACGACACATGCAC 59.693 50.000 0.00 0.00 0.00 4.57
535 839 1.020437 TTTGCTGAACGACACATGCA 58.980 45.000 0.00 0.00 0.00 3.96
536 840 1.780860 GTTTTGCTGAACGACACATGC 59.219 47.619 0.00 0.00 0.00 4.06
545 849 0.382636 CGGACGACGTTTTGCTGAAC 60.383 55.000 0.13 0.00 37.93 3.18
546 850 1.928653 CGGACGACGTTTTGCTGAA 59.071 52.632 0.13 0.00 37.93 3.02
547 851 2.591311 GCGGACGACGTTTTGCTGA 61.591 57.895 0.13 0.00 46.52 4.26
548 852 2.127758 GCGGACGACGTTTTGCTG 60.128 61.111 0.13 0.00 46.52 4.41
549 853 3.698463 CGCGGACGACGTTTTGCT 61.698 61.111 0.13 0.00 46.52 3.91
550 854 3.694394 TCGCGGACGACGTTTTGC 61.694 61.111 6.13 5.96 45.12 3.68
559 863 1.866496 CGGAAGTACTTCGCGGACG 60.866 63.158 25.44 19.42 40.37 4.79
560 864 0.109597 TTCGGAAGTACTTCGCGGAC 60.110 55.000 29.57 17.42 40.37 4.79
561 865 0.813184 ATTCGGAAGTACTTCGCGGA 59.187 50.000 29.57 26.00 40.37 5.54
562 866 1.197910 GATTCGGAAGTACTTCGCGG 58.802 55.000 29.57 21.52 40.37 6.46
563 867 1.197910 GGATTCGGAAGTACTTCGCG 58.802 55.000 26.96 26.96 40.37 5.87
564 868 1.134907 TGGGATTCGGAAGTACTTCGC 60.135 52.381 25.44 18.11 40.37 4.70
565 869 2.953466 TGGGATTCGGAAGTACTTCG 57.047 50.000 25.44 20.52 40.37 3.79
566 870 4.395231 CCTTTTGGGATTCGGAAGTACTTC 59.605 45.833 24.73 24.73 36.68 3.01
567 871 4.332828 CCTTTTGGGATTCGGAAGTACTT 58.667 43.478 8.13 8.13 37.23 2.24
568 872 3.872630 GCCTTTTGGGATTCGGAAGTACT 60.873 47.826 0.00 0.00 40.82 2.73
569 873 2.422479 GCCTTTTGGGATTCGGAAGTAC 59.578 50.000 0.00 0.00 40.82 2.73
570 874 2.307686 AGCCTTTTGGGATTCGGAAGTA 59.692 45.455 0.00 0.00 40.82 2.24
571 875 1.075536 AGCCTTTTGGGATTCGGAAGT 59.924 47.619 0.00 0.00 40.82 3.01
572 876 1.839424 AGCCTTTTGGGATTCGGAAG 58.161 50.000 0.00 0.00 40.82 3.46
573 877 3.086282 GTTAGCCTTTTGGGATTCGGAA 58.914 45.455 0.00 0.00 40.82 4.30
574 878 2.718563 GTTAGCCTTTTGGGATTCGGA 58.281 47.619 0.00 0.00 40.82 4.55
575 879 1.400494 CGTTAGCCTTTTGGGATTCGG 59.600 52.381 0.00 0.00 40.82 4.30
576 880 2.352388 TCGTTAGCCTTTTGGGATTCG 58.648 47.619 0.00 0.00 40.82 3.34
577 881 4.776795 TTTCGTTAGCCTTTTGGGATTC 57.223 40.909 0.00 0.00 40.82 2.52
578 882 5.245075 TGATTTTCGTTAGCCTTTTGGGATT 59.755 36.000 0.00 0.00 40.82 3.01
579 883 4.770010 TGATTTTCGTTAGCCTTTTGGGAT 59.230 37.500 0.00 0.00 40.82 3.85
580 884 4.145807 TGATTTTCGTTAGCCTTTTGGGA 58.854 39.130 0.00 0.00 40.82 4.37
581 885 4.513198 TGATTTTCGTTAGCCTTTTGGG 57.487 40.909 0.00 0.00 40.82 4.12
582 886 5.983118 ACTTTGATTTTCGTTAGCCTTTTGG 59.017 36.000 0.00 0.00 44.18 3.28
583 887 8.073768 TCTACTTTGATTTTCGTTAGCCTTTTG 58.926 33.333 0.00 0.00 0.00 2.44
584 888 8.161699 TCTACTTTGATTTTCGTTAGCCTTTT 57.838 30.769 0.00 0.00 0.00 2.27
585 889 7.660208 TCTCTACTTTGATTTTCGTTAGCCTTT 59.340 33.333 0.00 0.00 0.00 3.11
586 890 7.159372 TCTCTACTTTGATTTTCGTTAGCCTT 58.841 34.615 0.00 0.00 0.00 4.35
587 891 6.698380 TCTCTACTTTGATTTTCGTTAGCCT 58.302 36.000 0.00 0.00 0.00 4.58
588 892 6.590677 ACTCTCTACTTTGATTTTCGTTAGCC 59.409 38.462 0.00 0.00 0.00 3.93
589 893 7.583860 ACTCTCTACTTTGATTTTCGTTAGC 57.416 36.000 0.00 0.00 0.00 3.09
590 894 8.366666 CGAACTCTCTACTTTGATTTTCGTTAG 58.633 37.037 0.00 0.00 0.00 2.34
591 895 7.864379 ACGAACTCTCTACTTTGATTTTCGTTA 59.136 33.333 0.00 0.00 0.00 3.18
592 896 6.700520 ACGAACTCTCTACTTTGATTTTCGTT 59.299 34.615 0.00 0.00 0.00 3.85
593 897 6.144080 CACGAACTCTCTACTTTGATTTTCGT 59.856 38.462 0.00 0.00 0.00 3.85
594 898 6.144080 ACACGAACTCTCTACTTTGATTTTCG 59.856 38.462 0.00 0.00 0.00 3.46
595 899 7.284351 CACACGAACTCTCTACTTTGATTTTC 58.716 38.462 0.00 0.00 0.00 2.29
596 900 6.202954 CCACACGAACTCTCTACTTTGATTTT 59.797 38.462 0.00 0.00 0.00 1.82
597 901 5.696724 CCACACGAACTCTCTACTTTGATTT 59.303 40.000 0.00 0.00 0.00 2.17
598 902 5.221461 ACCACACGAACTCTCTACTTTGATT 60.221 40.000 0.00 0.00 0.00 2.57
599 903 4.281182 ACCACACGAACTCTCTACTTTGAT 59.719 41.667 0.00 0.00 0.00 2.57
600 904 3.635373 ACCACACGAACTCTCTACTTTGA 59.365 43.478 0.00 0.00 0.00 2.69
601 905 3.978687 ACCACACGAACTCTCTACTTTG 58.021 45.455 0.00 0.00 0.00 2.77
602 906 5.118642 GTACCACACGAACTCTCTACTTT 57.881 43.478 0.00 0.00 0.00 2.66
603 907 4.762956 GTACCACACGAACTCTCTACTT 57.237 45.455 0.00 0.00 0.00 2.24
615 919 9.914419 CAAAGCTAATTTGGATCGTACCACACG 62.914 44.444 3.17 0.00 46.47 4.49
621 925 5.957796 CGTTCAAAGCTAATTTGGATCGTAC 59.042 40.000 0.00 0.00 46.93 3.67
678 985 3.932089 GCTCAGTGAAAGAAGGCTTAGAG 59.068 47.826 0.00 0.00 32.98 2.43
685 992 2.260844 TGGTGCTCAGTGAAAGAAGG 57.739 50.000 0.00 0.00 0.00 3.46
686 993 3.369147 CGTATGGTGCTCAGTGAAAGAAG 59.631 47.826 0.00 0.00 0.00 2.85
687 994 3.244078 ACGTATGGTGCTCAGTGAAAGAA 60.244 43.478 0.00 0.00 0.00 2.52
688 995 2.299013 ACGTATGGTGCTCAGTGAAAGA 59.701 45.455 0.00 0.00 0.00 2.52
788 1096 3.565910 GAGATCCAGCTAGGCCGCG 62.566 68.421 0.00 0.00 37.29 6.46
791 1099 1.256812 GAGAGAGATCCAGCTAGGCC 58.743 60.000 0.00 0.00 37.29 5.19
793 1101 1.549950 GGGGAGAGAGATCCAGCTAGG 60.550 61.905 0.00 0.00 41.52 3.02
794 1102 1.428912 AGGGGAGAGAGATCCAGCTAG 59.571 57.143 0.00 0.00 41.52 3.42
796 1104 0.641601 AAGGGGAGAGAGATCCAGCT 59.358 55.000 0.00 0.00 41.52 4.24
797 1105 1.047801 GAAGGGGAGAGAGATCCAGC 58.952 60.000 0.00 0.00 41.52 4.85
798 1106 1.133637 TCGAAGGGGAGAGAGATCCAG 60.134 57.143 0.00 0.00 41.52 3.86
800 1108 2.074729 TTCGAAGGGGAGAGAGATCC 57.925 55.000 0.00 0.00 38.76 3.36
801 1109 4.376146 CAAATTCGAAGGGGAGAGAGATC 58.624 47.826 3.35 0.00 0.00 2.75
802 1110 3.432890 GCAAATTCGAAGGGGAGAGAGAT 60.433 47.826 3.35 0.00 0.00 2.75
803 1111 2.093447 GCAAATTCGAAGGGGAGAGAGA 60.093 50.000 3.35 0.00 0.00 3.10
804 1112 2.284190 GCAAATTCGAAGGGGAGAGAG 58.716 52.381 3.35 0.00 0.00 3.20
805 1113 1.065418 GGCAAATTCGAAGGGGAGAGA 60.065 52.381 3.35 0.00 0.00 3.10
806 1114 1.340017 TGGCAAATTCGAAGGGGAGAG 60.340 52.381 3.35 0.00 0.00 3.20
807 1115 0.695924 TGGCAAATTCGAAGGGGAGA 59.304 50.000 3.35 0.00 0.00 3.71
808 1116 1.544724 TTGGCAAATTCGAAGGGGAG 58.455 50.000 3.35 0.00 0.00 4.30
1007 1317 2.418910 GGCTCCGAGCAGTAGCAGA 61.419 63.158 21.76 0.00 44.75 4.26
1066 1376 4.473520 CTGCAGCCTGGGGTACGG 62.474 72.222 0.00 0.00 0.00 4.02
2098 2530 2.277501 GAATGCGCATGCCACGAC 60.278 61.111 26.09 6.07 41.78 4.34
2274 2718 2.125147 TTGATCCTCGCCGCCTTG 60.125 61.111 0.00 0.00 0.00 3.61
2358 2802 2.511600 CACATCCCGCGGAAGTCC 60.512 66.667 30.73 0.00 30.77 3.85
2496 2940 3.832237 CTTGCCACCGTCCACAGCT 62.832 63.158 0.00 0.00 0.00 4.24
2498 2942 1.669115 CTCTTGCCACCGTCCACAG 60.669 63.158 0.00 0.00 0.00 3.66
2697 3141 0.248377 GATCGCAGCTTGTCATTGCC 60.248 55.000 0.00 0.00 34.42 4.52
2793 3237 3.187022 ACGTTTAATTTGTACACCGGCTC 59.813 43.478 0.00 0.00 0.00 4.70
2853 3297 6.090763 GGGAAATTAAAAGAGATTGTTTGGCG 59.909 38.462 0.00 0.00 0.00 5.69
2879 3323 1.069227 CACCGCGGGAAAAGAGAAAAG 60.069 52.381 31.76 0.00 0.00 2.27
2884 3328 0.108138 AGATCACCGCGGGAAAAGAG 60.108 55.000 31.76 9.81 0.00 2.85
2885 3329 0.108329 GAGATCACCGCGGGAAAAGA 60.108 55.000 31.76 18.50 0.00 2.52
2886 3330 0.108138 AGAGATCACCGCGGGAAAAG 60.108 55.000 31.76 13.55 0.00 2.27
2954 3398 1.134946 GAATTTCGGCTTCCACCATGG 59.865 52.381 11.19 11.19 39.43 3.66
3014 3458 4.862574 CACATGCCAGATGATGAAAGTTTG 59.137 41.667 0.00 0.00 0.00 2.93
3125 3600 1.754745 GACACAGAGGGCTTGACCA 59.245 57.895 0.00 0.00 42.05 4.02
3134 3609 0.976641 TGCTGTTAGGGACACAGAGG 59.023 55.000 4.23 0.00 43.90 3.69
3238 3724 3.667497 TCTGTACAGCAACAAGGAGAG 57.333 47.619 18.45 0.00 0.00 3.20
3246 3732 6.554334 TTGGAAGTTTATCTGTACAGCAAC 57.446 37.500 18.45 18.12 0.00 4.17
3296 3782 0.812811 CTCCATCATCACTGCCACCG 60.813 60.000 0.00 0.00 0.00 4.94
3297 3783 0.254178 ACTCCATCATCACTGCCACC 59.746 55.000 0.00 0.00 0.00 4.61
3298 3784 1.376543 CACTCCATCATCACTGCCAC 58.623 55.000 0.00 0.00 0.00 5.01
3299 3785 0.253894 CCACTCCATCATCACTGCCA 59.746 55.000 0.00 0.00 0.00 4.92
3300 3786 0.254178 ACCACTCCATCATCACTGCC 59.746 55.000 0.00 0.00 0.00 4.85
3301 3787 1.376543 CACCACTCCATCATCACTGC 58.623 55.000 0.00 0.00 0.00 4.40
3302 3788 1.280133 ACCACCACTCCATCATCACTG 59.720 52.381 0.00 0.00 0.00 3.66
3303 3789 1.661463 ACCACCACTCCATCATCACT 58.339 50.000 0.00 0.00 0.00 3.41
3305 3791 2.439135 CCATACCACCACTCCATCATCA 59.561 50.000 0.00 0.00 0.00 3.07
3306 3792 2.439507 ACCATACCACCACTCCATCATC 59.560 50.000 0.00 0.00 0.00 2.92
3307 3793 2.492025 ACCATACCACCACTCCATCAT 58.508 47.619 0.00 0.00 0.00 2.45
3319 3805 1.138069 CTGTGTGCCGATACCATACCA 59.862 52.381 0.00 0.00 0.00 3.25
3320 3806 1.411246 TCTGTGTGCCGATACCATACC 59.589 52.381 0.00 0.00 0.00 2.73
3321 3807 2.882927 TCTGTGTGCCGATACCATAC 57.117 50.000 0.00 0.00 0.00 2.39
3322 3808 3.056821 GCTATCTGTGTGCCGATACCATA 60.057 47.826 0.00 0.00 0.00 2.74
3323 3809 2.289072 GCTATCTGTGTGCCGATACCAT 60.289 50.000 0.00 0.00 0.00 3.55
3355 3841 3.519107 TCACCAAACTCCATAGAGCATGA 59.481 43.478 0.00 0.00 44.65 3.07
3424 3910 0.318107 CACGCCTTGAAAACTGGCAG 60.318 55.000 14.16 14.16 46.39 4.85
3479 3965 4.336993 GGTGAGTCTGATGGAGTACAGTAG 59.663 50.000 0.00 0.00 35.84 2.57
3495 3981 1.757699 GGTAGAGTGGGATGGTGAGTC 59.242 57.143 0.00 0.00 0.00 3.36
3496 3982 1.078823 TGGTAGAGTGGGATGGTGAGT 59.921 52.381 0.00 0.00 0.00 3.41
3497 3983 1.759445 CTGGTAGAGTGGGATGGTGAG 59.241 57.143 0.00 0.00 0.00 3.51
3499 3985 1.573108 ACTGGTAGAGTGGGATGGTG 58.427 55.000 0.00 0.00 31.75 4.17
3500 3986 2.043939 TGTACTGGTAGAGTGGGATGGT 59.956 50.000 0.00 0.00 35.96 3.55
3501 3987 2.695666 CTGTACTGGTAGAGTGGGATGG 59.304 54.545 0.00 0.00 35.96 3.51
3502 3988 2.695666 CCTGTACTGGTAGAGTGGGATG 59.304 54.545 10.53 0.00 35.96 3.51
3503 3989 2.955461 GCCTGTACTGGTAGAGTGGGAT 60.955 54.545 18.89 0.00 35.96 3.85
3504 3990 1.618888 GCCTGTACTGGTAGAGTGGGA 60.619 57.143 18.89 0.00 35.96 4.37
3505 3991 0.824759 GCCTGTACTGGTAGAGTGGG 59.175 60.000 18.89 0.00 35.96 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.