Multiple sequence alignment - TraesCS5A01G312100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G312100 chr5A 100.000 2210 0 0 1 2210 523742691 523744900 0.000000e+00 4082.0
1 TraesCS5A01G312100 chr6A 94.767 1051 51 3 418 1466 561851106 561850058 0.000000e+00 1633.0
2 TraesCS5A01G312100 chr7D 91.403 1105 63 8 1030 2130 7881638 7882714 0.000000e+00 1485.0
3 TraesCS5A01G312100 chr7D 88.100 479 34 8 565 1032 7881043 7881509 4.150000e-152 547.0
4 TraesCS5A01G312100 chr7D 90.816 98 6 3 415 512 584452786 584452692 6.400000e-26 128.0
5 TraesCS5A01G312100 chr7D 100.000 37 0 0 2173 2209 7882700 7882736 3.940000e-08 69.4
6 TraesCS5A01G312100 chr2D 92.373 236 16 2 168 402 392786554 392786788 3.520000e-88 335.0
7 TraesCS5A01G312100 chr2D 94.495 109 2 4 416 524 542747178 542747074 4.880000e-37 165.0
8 TraesCS5A01G312100 chr5B 89.451 237 24 1 168 403 412784280 412784516 4.610000e-77 298.0
9 TraesCS5A01G312100 chr5B 89.855 138 14 0 1 138 494654624 494654761 6.270000e-41 178.0
10 TraesCS5A01G312100 chr5B 93.333 45 1 2 2129 2172 681766128 681766085 5.090000e-07 65.8
11 TraesCS5A01G312100 chr3D 97.849 93 2 0 415 507 103814958 103814866 6.310000e-36 161.0
12 TraesCS5A01G312100 chr3D 97.468 79 2 0 429 507 141494726 141494804 3.830000e-28 135.0
13 TraesCS5A01G312100 chr3D 96.341 82 2 1 430 511 29379996 29380076 1.380000e-27 134.0
14 TraesCS5A01G312100 chr1D 95.789 95 2 2 415 507 440870647 440870741 3.800000e-33 152.0
15 TraesCS5A01G312100 chr5D 93.258 89 5 1 427 515 419464048 419464135 1.780000e-26 130.0
16 TraesCS5A01G312100 chr5D 97.727 44 1 0 2129 2172 456815264 456815307 2.350000e-10 76.8
17 TraesCS5A01G312100 chr7A 91.398 93 6 2 415 507 66747383 66747473 2.300000e-25 126.0
18 TraesCS5A01G312100 chr1B 81.600 125 19 4 178 299 286707202 286707079 1.400000e-17 100.0
19 TraesCS5A01G312100 chr1B 97.727 44 1 0 2129 2172 614682400 614682357 2.350000e-10 76.8
20 TraesCS5A01G312100 chr1A 80.000 125 21 4 178 299 252485425 252485302 3.020000e-14 89.8
21 TraesCS5A01G312100 chrUn 95.556 45 1 1 2129 2172 110475902 110475858 1.090000e-08 71.3
22 TraesCS5A01G312100 chr4B 95.349 43 2 0 2130 2172 495118314 495118272 3.940000e-08 69.4
23 TraesCS5A01G312100 chr4A 91.489 47 4 0 2126 2172 743567021 743566975 5.090000e-07 65.8
24 TraesCS5A01G312100 chr3B 91.489 47 4 0 2126 2172 763294751 763294705 5.090000e-07 65.8
25 TraesCS5A01G312100 chr2A 93.333 45 2 1 2129 2172 765578705 765578661 5.090000e-07 65.8
26 TraesCS5A01G312100 chr2A 89.796 49 4 1 2125 2172 621027454 621027406 6.590000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G312100 chr5A 523742691 523744900 2209 False 4082.000000 4082 100.000000 1 2210 1 chr5A.!!$F1 2209
1 TraesCS5A01G312100 chr6A 561850058 561851106 1048 True 1633.000000 1633 94.767000 418 1466 1 chr6A.!!$R1 1048
2 TraesCS5A01G312100 chr7D 7881043 7882736 1693 False 700.466667 1485 93.167667 565 2209 3 chr7D.!!$F1 1644

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
405 406 0.03759 CTCACCGTTTCATCCCCCAA 59.962 55.0 0.0 0.0 0.0 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1628 1772 0.1791 AGGCGACTGTTGATCCATCG 60.179 55.0 0.0 0.0 41.13 3.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 1.525941 CATGCACATGCGGATATCCA 58.474 50.000 21.70 3.25 45.83 3.41
41 42 1.881324 CATGCACATGCGGATATCCAA 59.119 47.619 21.70 9.46 45.83 3.53
42 43 1.308047 TGCACATGCGGATATCCAAC 58.692 50.000 21.70 13.04 45.83 3.77
43 44 0.593128 GCACATGCGGATATCCAACC 59.407 55.000 21.70 9.48 35.14 3.77
48 49 2.032071 CGGATATCCAACCGGGCC 59.968 66.667 21.70 0.00 44.59 5.80
49 50 2.032071 GGATATCCAACCGGGCCG 59.968 66.667 21.46 21.46 36.21 6.13
50 51 3.546714 GGATATCCAACCGGGCCGG 62.547 68.421 41.89 41.89 44.00 6.13
63 64 4.776647 GCCGGCCAATGTTGCGAC 62.777 66.667 18.11 0.00 0.00 5.19
64 65 3.055719 CCGGCCAATGTTGCGACT 61.056 61.111 2.24 0.00 0.00 4.18
65 66 2.176546 CGGCCAATGTTGCGACTG 59.823 61.111 2.24 0.00 0.00 3.51
66 67 2.616330 CGGCCAATGTTGCGACTGT 61.616 57.895 2.24 0.00 0.00 3.55
67 68 1.295357 CGGCCAATGTTGCGACTGTA 61.295 55.000 2.24 0.00 0.00 2.74
68 69 0.447801 GGCCAATGTTGCGACTGTAG 59.552 55.000 5.50 0.00 0.00 2.74
69 70 1.438651 GCCAATGTTGCGACTGTAGA 58.561 50.000 5.50 0.00 0.00 2.59
70 71 1.804151 GCCAATGTTGCGACTGTAGAA 59.196 47.619 5.50 0.00 0.00 2.10
71 72 2.412847 GCCAATGTTGCGACTGTAGAAC 60.413 50.000 5.50 0.00 0.00 3.01
72 73 3.067106 CCAATGTTGCGACTGTAGAACT 58.933 45.455 5.50 0.00 0.00 3.01
73 74 4.242475 CCAATGTTGCGACTGTAGAACTA 58.758 43.478 5.50 0.00 0.00 2.24
74 75 4.688879 CCAATGTTGCGACTGTAGAACTAA 59.311 41.667 5.50 0.00 0.00 2.24
75 76 5.178623 CCAATGTTGCGACTGTAGAACTAAA 59.821 40.000 5.50 0.00 0.00 1.85
76 77 6.293190 CCAATGTTGCGACTGTAGAACTAAAA 60.293 38.462 5.50 0.00 0.00 1.52
77 78 6.854496 ATGTTGCGACTGTAGAACTAAAAA 57.146 33.333 5.50 0.00 0.00 1.94
97 98 4.411256 AAAAAGTCACGTTCTGTAGGGA 57.589 40.909 0.00 0.00 0.00 4.20
98 99 4.618920 AAAAGTCACGTTCTGTAGGGAT 57.381 40.909 0.00 0.00 0.00 3.85
99 100 3.870633 AAGTCACGTTCTGTAGGGATC 57.129 47.619 0.00 0.00 0.00 3.36
100 101 2.803956 AGTCACGTTCTGTAGGGATCA 58.196 47.619 0.00 0.00 0.00 2.92
101 102 3.162666 AGTCACGTTCTGTAGGGATCAA 58.837 45.455 0.00 0.00 0.00 2.57
102 103 3.193691 AGTCACGTTCTGTAGGGATCAAG 59.806 47.826 0.00 0.00 0.00 3.02
103 104 2.094182 TCACGTTCTGTAGGGATCAAGC 60.094 50.000 0.00 0.00 0.00 4.01
104 105 1.135083 ACGTTCTGTAGGGATCAAGCG 60.135 52.381 0.00 0.00 0.00 4.68
105 106 1.291132 GTTCTGTAGGGATCAAGCGC 58.709 55.000 0.00 0.00 0.00 5.92
106 107 0.901827 TTCTGTAGGGATCAAGCGCA 59.098 50.000 11.47 0.00 0.00 6.09
107 108 0.461548 TCTGTAGGGATCAAGCGCAG 59.538 55.000 11.47 0.72 0.00 5.18
108 109 0.531532 CTGTAGGGATCAAGCGCAGG 60.532 60.000 11.47 0.00 0.00 4.85
109 110 1.264749 TGTAGGGATCAAGCGCAGGT 61.265 55.000 11.47 0.00 44.60 4.00
110 111 0.811616 GTAGGGATCAAGCGCAGGTG 60.812 60.000 11.47 4.57 39.47 4.00
111 112 2.593468 TAGGGATCAAGCGCAGGTGC 62.593 60.000 11.47 2.55 39.47 5.01
113 114 2.467826 GGATCAAGCGCAGGTGCTC 61.468 63.158 11.47 5.60 46.60 4.26
114 115 2.437359 ATCAAGCGCAGGTGCTCC 60.437 61.111 11.47 0.00 46.60 4.70
115 116 3.258228 ATCAAGCGCAGGTGCTCCA 62.258 57.895 11.47 0.00 46.60 3.86
116 117 2.753009 ATCAAGCGCAGGTGCTCCAA 62.753 55.000 11.47 0.00 46.60 3.53
117 118 2.034687 AAGCGCAGGTGCTCCAAT 59.965 55.556 11.47 0.00 46.60 3.16
118 119 1.604593 AAGCGCAGGTGCTCCAATT 60.605 52.632 11.47 0.00 46.60 2.32
119 120 1.589716 AAGCGCAGGTGCTCCAATTC 61.590 55.000 11.47 0.00 46.60 2.17
120 121 2.042831 GCGCAGGTGCTCCAATTCT 61.043 57.895 0.30 0.00 39.32 2.40
121 122 0.744414 GCGCAGGTGCTCCAATTCTA 60.744 55.000 0.30 0.00 39.32 2.10
122 123 1.737838 CGCAGGTGCTCCAATTCTAA 58.262 50.000 7.70 0.00 39.32 2.10
123 124 2.083774 CGCAGGTGCTCCAATTCTAAA 58.916 47.619 7.70 0.00 39.32 1.85
124 125 2.487762 CGCAGGTGCTCCAATTCTAAAA 59.512 45.455 7.70 0.00 39.32 1.52
125 126 3.670627 CGCAGGTGCTCCAATTCTAAAAC 60.671 47.826 7.70 0.00 39.32 2.43
126 127 3.255642 GCAGGTGCTCCAATTCTAAAACA 59.744 43.478 7.70 0.00 38.21 2.83
127 128 4.798574 CAGGTGCTCCAATTCTAAAACAC 58.201 43.478 7.70 0.00 35.89 3.32
128 129 3.826729 AGGTGCTCCAATTCTAAAACACC 59.173 43.478 7.70 0.00 45.26 4.16
129 130 3.826729 GGTGCTCCAATTCTAAAACACCT 59.173 43.478 0.00 0.00 42.38 4.00
130 131 4.321230 GGTGCTCCAATTCTAAAACACCTG 60.321 45.833 0.00 0.00 42.38 4.00
131 132 3.255642 TGCTCCAATTCTAAAACACCTGC 59.744 43.478 0.00 0.00 0.00 4.85
132 133 3.507622 GCTCCAATTCTAAAACACCTGCT 59.492 43.478 0.00 0.00 0.00 4.24
133 134 4.700213 GCTCCAATTCTAAAACACCTGCTA 59.300 41.667 0.00 0.00 0.00 3.49
134 135 5.358160 GCTCCAATTCTAAAACACCTGCTAT 59.642 40.000 0.00 0.00 0.00 2.97
135 136 6.127619 GCTCCAATTCTAAAACACCTGCTATT 60.128 38.462 0.00 0.00 0.00 1.73
136 137 7.067008 GCTCCAATTCTAAAACACCTGCTATTA 59.933 37.037 0.00 0.00 0.00 0.98
137 138 8.276252 TCCAATTCTAAAACACCTGCTATTAC 57.724 34.615 0.00 0.00 0.00 1.89
138 139 8.107095 TCCAATTCTAAAACACCTGCTATTACT 58.893 33.333 0.00 0.00 0.00 2.24
139 140 9.391006 CCAATTCTAAAACACCTGCTATTACTA 57.609 33.333 0.00 0.00 0.00 1.82
141 142 9.614792 AATTCTAAAACACCTGCTATTACTAGG 57.385 33.333 0.00 0.00 37.61 3.02
142 143 7.729124 TCTAAAACACCTGCTATTACTAGGT 57.271 36.000 0.00 0.00 45.36 3.08
143 144 7.779073 TCTAAAACACCTGCTATTACTAGGTC 58.221 38.462 0.00 0.00 42.72 3.85
144 145 6.622427 AAAACACCTGCTATTACTAGGTCT 57.378 37.500 0.00 0.00 42.72 3.85
145 146 5.599999 AACACCTGCTATTACTAGGTCTG 57.400 43.478 0.00 0.00 42.72 3.51
146 147 3.961408 ACACCTGCTATTACTAGGTCTGG 59.039 47.826 0.00 0.00 42.72 3.86
147 148 3.322254 CACCTGCTATTACTAGGTCTGGG 59.678 52.174 0.00 0.00 42.72 4.45
148 149 2.300437 CCTGCTATTACTAGGTCTGGGC 59.700 54.545 0.00 0.00 0.00 5.36
149 150 1.961394 TGCTATTACTAGGTCTGGGCG 59.039 52.381 0.00 0.00 0.00 6.13
150 151 1.962100 GCTATTACTAGGTCTGGGCGT 59.038 52.381 0.00 0.00 0.00 5.68
151 152 2.364647 GCTATTACTAGGTCTGGGCGTT 59.635 50.000 0.00 0.00 0.00 4.84
152 153 3.552478 GCTATTACTAGGTCTGGGCGTTC 60.552 52.174 0.00 0.00 0.00 3.95
153 154 0.813184 TTACTAGGTCTGGGCGTTCG 59.187 55.000 0.00 0.00 0.00 3.95
154 155 1.033746 TACTAGGTCTGGGCGTTCGG 61.034 60.000 0.00 0.00 0.00 4.30
155 156 2.283388 TAGGTCTGGGCGTTCGGT 60.283 61.111 0.00 0.00 0.00 4.69
156 157 1.001020 TAGGTCTGGGCGTTCGGTA 60.001 57.895 0.00 0.00 0.00 4.02
157 158 1.033746 TAGGTCTGGGCGTTCGGTAG 61.034 60.000 0.00 0.00 0.00 3.18
158 159 2.345760 GGTCTGGGCGTTCGGTAGA 61.346 63.158 0.00 0.00 0.00 2.59
159 160 1.588082 GTCTGGGCGTTCGGTAGAA 59.412 57.895 0.00 0.00 0.00 2.10
160 161 0.037975 GTCTGGGCGTTCGGTAGAAA 60.038 55.000 0.00 0.00 38.23 2.52
161 162 0.037975 TCTGGGCGTTCGGTAGAAAC 60.038 55.000 0.00 0.00 38.23 2.78
162 163 1.004679 TGGGCGTTCGGTAGAAACC 60.005 57.895 0.00 0.00 42.95 3.27
196 197 8.514136 TTTTATGAATTCGGTTAGCAAAAGTG 57.486 30.769 0.04 0.00 0.00 3.16
197 198 5.957842 ATGAATTCGGTTAGCAAAAGTGA 57.042 34.783 0.04 0.00 0.00 3.41
198 199 5.759506 TGAATTCGGTTAGCAAAAGTGAA 57.240 34.783 0.04 0.00 0.00 3.18
199 200 6.137794 TGAATTCGGTTAGCAAAAGTGAAA 57.862 33.333 0.04 0.00 0.00 2.69
200 201 6.565234 TGAATTCGGTTAGCAAAAGTGAAAA 58.435 32.000 0.04 0.00 0.00 2.29
201 202 6.474102 TGAATTCGGTTAGCAAAAGTGAAAAC 59.526 34.615 0.04 0.00 0.00 2.43
202 203 4.295857 TCGGTTAGCAAAAGTGAAAACC 57.704 40.909 0.00 0.00 37.55 3.27
204 205 4.295857 GGTTAGCAAAAGTGAAAACCGA 57.704 40.909 0.00 0.00 33.78 4.69
205 206 4.674475 GGTTAGCAAAAGTGAAAACCGAA 58.326 39.130 0.00 0.00 33.78 4.30
206 207 5.103687 GGTTAGCAAAAGTGAAAACCGAAA 58.896 37.500 0.00 0.00 33.78 3.46
207 208 5.751509 GGTTAGCAAAAGTGAAAACCGAAAT 59.248 36.000 0.00 0.00 33.78 2.17
208 209 6.256975 GGTTAGCAAAAGTGAAAACCGAAATT 59.743 34.615 0.00 0.00 33.78 1.82
209 210 7.435784 GGTTAGCAAAAGTGAAAACCGAAATTA 59.564 33.333 0.00 0.00 33.78 1.40
210 211 8.809478 GTTAGCAAAAGTGAAAACCGAAATTAA 58.191 29.630 0.00 0.00 0.00 1.40
211 212 7.229228 AGCAAAAGTGAAAACCGAAATTAAC 57.771 32.000 0.00 0.00 0.00 2.01
212 213 6.814146 AGCAAAAGTGAAAACCGAAATTAACA 59.186 30.769 0.00 0.00 0.00 2.41
213 214 7.332182 AGCAAAAGTGAAAACCGAAATTAACAA 59.668 29.630 0.00 0.00 0.00 2.83
214 215 7.958025 GCAAAAGTGAAAACCGAAATTAACAAA 59.042 29.630 0.00 0.00 0.00 2.83
215 216 9.813080 CAAAAGTGAAAACCGAAATTAACAAAA 57.187 25.926 0.00 0.00 0.00 2.44
245 246 9.733219 TCAACTAACCAAAAATTTAGTTAACCG 57.267 29.630 0.88 0.00 43.52 4.44
246 247 9.733219 CAACTAACCAAAAATTTAGTTAACCGA 57.267 29.630 0.88 0.00 43.52 4.69
268 269 2.453983 TTTTCGGTTCGGTATTCGGT 57.546 45.000 0.00 0.00 39.77 4.69
269 270 2.453983 TTTCGGTTCGGTATTCGGTT 57.546 45.000 0.00 0.00 39.77 4.44
270 271 2.453983 TTCGGTTCGGTATTCGGTTT 57.546 45.000 0.00 0.00 39.77 3.27
271 272 2.453983 TCGGTTCGGTATTCGGTTTT 57.546 45.000 0.00 0.00 39.77 2.43
272 273 3.584406 TCGGTTCGGTATTCGGTTTTA 57.416 42.857 0.00 0.00 39.77 1.52
273 274 3.510719 TCGGTTCGGTATTCGGTTTTAG 58.489 45.455 0.00 0.00 39.77 1.85
274 275 2.029606 CGGTTCGGTATTCGGTTTTAGC 59.970 50.000 0.00 0.00 39.77 3.09
275 276 2.352651 GGTTCGGTATTCGGTTTTAGCC 59.647 50.000 0.00 0.00 39.77 3.93
286 287 2.569059 GGTTTTAGCCGATTAGGGACC 58.431 52.381 0.00 0.00 41.48 4.46
287 288 2.092807 GGTTTTAGCCGATTAGGGACCA 60.093 50.000 0.00 0.00 41.48 4.02
288 289 3.434596 GGTTTTAGCCGATTAGGGACCAT 60.435 47.826 0.00 0.00 41.48 3.55
289 290 4.202388 GGTTTTAGCCGATTAGGGACCATA 60.202 45.833 0.00 0.00 41.48 2.74
290 291 5.514310 GGTTTTAGCCGATTAGGGACCATAT 60.514 44.000 0.00 0.00 41.48 1.78
291 292 6.296030 GGTTTTAGCCGATTAGGGACCATATA 60.296 42.308 0.00 0.00 41.48 0.86
292 293 5.927281 TTAGCCGATTAGGGACCATATAC 57.073 43.478 0.00 0.00 41.48 1.47
293 294 3.786553 AGCCGATTAGGGACCATATACA 58.213 45.455 0.00 0.00 41.48 2.29
294 295 3.769844 AGCCGATTAGGGACCATATACAG 59.230 47.826 0.00 0.00 41.48 2.74
295 296 3.767673 GCCGATTAGGGACCATATACAGA 59.232 47.826 0.00 0.00 41.48 3.41
296 297 4.222145 GCCGATTAGGGACCATATACAGAA 59.778 45.833 0.00 0.00 41.48 3.02
297 298 5.279809 GCCGATTAGGGACCATATACAGAAA 60.280 44.000 0.00 0.00 41.48 2.52
298 299 6.743208 GCCGATTAGGGACCATATACAGAAAA 60.743 42.308 0.00 0.00 41.48 2.29
299 300 6.649557 CCGATTAGGGACCATATACAGAAAAC 59.350 42.308 0.00 0.00 35.97 2.43
300 301 7.214381 CGATTAGGGACCATATACAGAAAACA 58.786 38.462 0.00 0.00 0.00 2.83
301 302 7.878127 CGATTAGGGACCATATACAGAAAACAT 59.122 37.037 0.00 0.00 0.00 2.71
306 307 9.936329 AGGGACCATATACAGAAAACATATTTT 57.064 29.630 0.00 0.00 40.83 1.82
317 318 9.474920 ACAGAAAACATATTTTTACACCATGTG 57.525 29.630 0.00 0.00 38.17 3.21
318 319 9.474920 CAGAAAACATATTTTTACACCATGTGT 57.525 29.630 5.12 5.12 42.66 3.72
326 327 7.784633 ATTTTTACACCATGTGTTTTCTTGG 57.215 32.000 5.06 0.00 45.08 3.61
327 328 2.888834 ACACCATGTGTTTTCTTGGC 57.111 45.000 0.00 0.00 45.08 4.52
328 329 1.412343 ACACCATGTGTTTTCTTGGCC 59.588 47.619 0.00 0.00 45.08 5.36
329 330 1.047801 ACCATGTGTTTTCTTGGCCC 58.952 50.000 0.00 0.00 36.49 5.80
330 331 1.047002 CCATGTGTTTTCTTGGCCCA 58.953 50.000 0.00 0.00 0.00 5.36
331 332 1.415659 CCATGTGTTTTCTTGGCCCAA 59.584 47.619 0.00 0.00 0.00 4.12
332 333 2.548493 CCATGTGTTTTCTTGGCCCAAG 60.548 50.000 17.74 17.74 42.25 3.61
333 334 0.463620 TGTGTTTTCTTGGCCCAAGC 59.536 50.000 19.00 5.27 40.84 4.01
334 335 0.752658 GTGTTTTCTTGGCCCAAGCT 59.247 50.000 19.00 0.00 40.84 3.74
335 336 1.960689 GTGTTTTCTTGGCCCAAGCTA 59.039 47.619 19.00 6.33 40.84 3.32
336 337 2.364002 GTGTTTTCTTGGCCCAAGCTAA 59.636 45.455 19.00 12.01 40.84 3.09
337 338 2.364002 TGTTTTCTTGGCCCAAGCTAAC 59.636 45.455 19.00 21.47 40.84 2.34
338 339 2.628178 GTTTTCTTGGCCCAAGCTAACT 59.372 45.455 19.00 0.00 40.84 2.24
339 340 1.909700 TTCTTGGCCCAAGCTAACTG 58.090 50.000 19.00 0.00 40.84 3.16
340 341 0.609131 TCTTGGCCCAAGCTAACTGC 60.609 55.000 19.00 0.00 40.84 4.40
350 351 3.845625 GCTAACTGCTTTGCACGTT 57.154 47.368 0.00 10.39 38.95 3.99
351 352 2.961522 GCTAACTGCTTTGCACGTTA 57.038 45.000 0.00 11.17 38.95 3.18
352 353 3.471495 GCTAACTGCTTTGCACGTTAT 57.529 42.857 11.71 0.00 34.47 1.89
353 354 3.821841 GCTAACTGCTTTGCACGTTATT 58.178 40.909 11.71 0.00 34.47 1.40
354 355 3.846335 GCTAACTGCTTTGCACGTTATTC 59.154 43.478 11.71 6.71 34.47 1.75
355 356 2.989422 ACTGCTTTGCACGTTATTCC 57.011 45.000 0.00 0.00 33.79 3.01
356 357 2.504367 ACTGCTTTGCACGTTATTCCT 58.496 42.857 0.00 0.00 33.79 3.36
357 358 3.670625 ACTGCTTTGCACGTTATTCCTA 58.329 40.909 0.00 0.00 33.79 2.94
358 359 3.435671 ACTGCTTTGCACGTTATTCCTAC 59.564 43.478 0.00 0.00 33.79 3.18
359 360 2.745281 TGCTTTGCACGTTATTCCTACC 59.255 45.455 0.00 0.00 31.71 3.18
360 361 3.007635 GCTTTGCACGTTATTCCTACCT 58.992 45.455 0.00 0.00 0.00 3.08
361 362 3.181510 GCTTTGCACGTTATTCCTACCTG 60.182 47.826 0.00 0.00 0.00 4.00
362 363 3.965379 TTGCACGTTATTCCTACCTGA 57.035 42.857 0.00 0.00 0.00 3.86
363 364 3.520290 TGCACGTTATTCCTACCTGAG 57.480 47.619 0.00 0.00 0.00 3.35
364 365 2.202566 GCACGTTATTCCTACCTGAGC 58.797 52.381 0.00 0.00 0.00 4.26
365 366 2.822764 CACGTTATTCCTACCTGAGCC 58.177 52.381 0.00 0.00 0.00 4.70
366 367 2.431057 CACGTTATTCCTACCTGAGCCT 59.569 50.000 0.00 0.00 0.00 4.58
367 368 2.431057 ACGTTATTCCTACCTGAGCCTG 59.569 50.000 0.00 0.00 0.00 4.85
368 369 2.803492 CGTTATTCCTACCTGAGCCTGC 60.803 54.545 0.00 0.00 0.00 4.85
369 370 1.424638 TATTCCTACCTGAGCCTGCC 58.575 55.000 0.00 0.00 0.00 4.85
370 371 0.327000 ATTCCTACCTGAGCCTGCCT 60.327 55.000 0.00 0.00 0.00 4.75
371 372 0.547712 TTCCTACCTGAGCCTGCCTT 60.548 55.000 0.00 0.00 0.00 4.35
372 373 0.978146 TCCTACCTGAGCCTGCCTTC 60.978 60.000 0.00 0.00 0.00 3.46
373 374 0.980231 CCTACCTGAGCCTGCCTTCT 60.980 60.000 0.00 0.00 0.00 2.85
374 375 0.908198 CTACCTGAGCCTGCCTTCTT 59.092 55.000 0.00 0.00 0.00 2.52
375 376 2.111384 CTACCTGAGCCTGCCTTCTTA 58.889 52.381 0.00 0.00 0.00 2.10
376 377 1.362224 ACCTGAGCCTGCCTTCTTAA 58.638 50.000 0.00 0.00 0.00 1.85
377 378 1.280421 ACCTGAGCCTGCCTTCTTAAG 59.720 52.381 0.00 0.00 0.00 1.85
378 379 1.280421 CCTGAGCCTGCCTTCTTAAGT 59.720 52.381 1.63 0.00 0.00 2.24
379 380 2.501723 CCTGAGCCTGCCTTCTTAAGTA 59.498 50.000 1.63 0.00 0.00 2.24
380 381 3.055094 CCTGAGCCTGCCTTCTTAAGTAA 60.055 47.826 1.63 0.00 0.00 2.24
381 382 3.935828 CTGAGCCTGCCTTCTTAAGTAAC 59.064 47.826 1.63 0.00 0.00 2.50
382 383 3.271729 GAGCCTGCCTTCTTAAGTAACC 58.728 50.000 1.63 0.00 0.00 2.85
383 384 2.642807 AGCCTGCCTTCTTAAGTAACCA 59.357 45.455 1.63 0.00 0.00 3.67
384 385 3.073946 AGCCTGCCTTCTTAAGTAACCAA 59.926 43.478 1.63 0.00 0.00 3.67
385 386 4.017126 GCCTGCCTTCTTAAGTAACCAAT 58.983 43.478 1.63 0.00 0.00 3.16
386 387 4.096532 GCCTGCCTTCTTAAGTAACCAATC 59.903 45.833 1.63 0.00 0.00 2.67
387 388 5.501156 CCTGCCTTCTTAAGTAACCAATCT 58.499 41.667 1.63 0.00 0.00 2.40
388 389 5.586643 CCTGCCTTCTTAAGTAACCAATCTC 59.413 44.000 1.63 0.00 0.00 2.75
389 390 6.121776 TGCCTTCTTAAGTAACCAATCTCA 57.878 37.500 1.63 0.00 0.00 3.27
390 391 5.938125 TGCCTTCTTAAGTAACCAATCTCAC 59.062 40.000 1.63 0.00 0.00 3.51
391 392 5.354513 GCCTTCTTAAGTAACCAATCTCACC 59.645 44.000 1.63 0.00 0.00 4.02
392 393 5.581085 CCTTCTTAAGTAACCAATCTCACCG 59.419 44.000 1.63 0.00 0.00 4.94
393 394 5.733620 TCTTAAGTAACCAATCTCACCGT 57.266 39.130 1.63 0.00 0.00 4.83
394 395 6.105397 TCTTAAGTAACCAATCTCACCGTT 57.895 37.500 1.63 0.00 0.00 4.44
395 396 6.527423 TCTTAAGTAACCAATCTCACCGTTT 58.473 36.000 1.63 0.00 0.00 3.60
396 397 6.647895 TCTTAAGTAACCAATCTCACCGTTTC 59.352 38.462 1.63 0.00 0.00 2.78
397 398 4.345859 AGTAACCAATCTCACCGTTTCA 57.654 40.909 0.00 0.00 0.00 2.69
398 399 4.906618 AGTAACCAATCTCACCGTTTCAT 58.093 39.130 0.00 0.00 0.00 2.57
399 400 4.935808 AGTAACCAATCTCACCGTTTCATC 59.064 41.667 0.00 0.00 0.00 2.92
400 401 2.711542 ACCAATCTCACCGTTTCATCC 58.288 47.619 0.00 0.00 0.00 3.51
401 402 2.017049 CCAATCTCACCGTTTCATCCC 58.983 52.381 0.00 0.00 0.00 3.85
402 403 2.017049 CAATCTCACCGTTTCATCCCC 58.983 52.381 0.00 0.00 0.00 4.81
403 404 0.546598 ATCTCACCGTTTCATCCCCC 59.453 55.000 0.00 0.00 0.00 5.40
404 405 0.838554 TCTCACCGTTTCATCCCCCA 60.839 55.000 0.00 0.00 0.00 4.96
405 406 0.037590 CTCACCGTTTCATCCCCCAA 59.962 55.000 0.00 0.00 0.00 4.12
406 407 0.701731 TCACCGTTTCATCCCCCAAT 59.298 50.000 0.00 0.00 0.00 3.16
407 408 1.102978 CACCGTTTCATCCCCCAATC 58.897 55.000 0.00 0.00 0.00 2.67
408 409 0.999712 ACCGTTTCATCCCCCAATCT 59.000 50.000 0.00 0.00 0.00 2.40
409 410 1.357761 ACCGTTTCATCCCCCAATCTT 59.642 47.619 0.00 0.00 0.00 2.40
410 411 2.225267 ACCGTTTCATCCCCCAATCTTT 60.225 45.455 0.00 0.00 0.00 2.52
411 412 2.427095 CCGTTTCATCCCCCAATCTTTC 59.573 50.000 0.00 0.00 0.00 2.62
412 413 3.356290 CGTTTCATCCCCCAATCTTTCT 58.644 45.455 0.00 0.00 0.00 2.52
413 414 3.378427 CGTTTCATCCCCCAATCTTTCTC 59.622 47.826 0.00 0.00 0.00 2.87
414 415 4.604156 GTTTCATCCCCCAATCTTTCTCT 58.396 43.478 0.00 0.00 0.00 3.10
415 416 5.629133 CGTTTCATCCCCCAATCTTTCTCTA 60.629 44.000 0.00 0.00 0.00 2.43
416 417 6.187682 GTTTCATCCCCCAATCTTTCTCTAA 58.812 40.000 0.00 0.00 0.00 2.10
456 457 3.354089 AAAGCACGGATTGACTTTGTG 57.646 42.857 0.00 0.00 33.18 3.33
462 463 1.539827 CGGATTGACTTTGTGGGGTTC 59.460 52.381 0.00 0.00 0.00 3.62
476 477 1.073177 GGGTTCACCGTCACAATACG 58.927 55.000 0.00 0.00 42.49 3.06
478 479 1.425412 GTTCACCGTCACAATACGCT 58.575 50.000 0.00 0.00 41.51 5.07
480 481 1.705256 TCACCGTCACAATACGCTTC 58.295 50.000 0.00 0.00 41.51 3.86
481 482 1.271379 TCACCGTCACAATACGCTTCT 59.729 47.619 0.00 0.00 41.51 2.85
483 484 2.478894 CACCGTCACAATACGCTTCTTT 59.521 45.455 0.00 0.00 41.51 2.52
484 485 2.735134 ACCGTCACAATACGCTTCTTTC 59.265 45.455 0.00 0.00 41.51 2.62
495 496 6.730960 ATACGCTTCTTTCCGTGAATTTAA 57.269 33.333 0.00 0.00 38.28 1.52
507 508 6.435428 TCCGTGAATTTAAGCTTTCAGTTTC 58.565 36.000 3.20 2.58 32.79 2.78
510 511 7.435192 CCGTGAATTTAAGCTTTCAGTTTCTTT 59.565 33.333 3.20 0.00 32.79 2.52
521 522 7.329471 AGCTTTCAGTTTCTTTTTCTTCAACAC 59.671 33.333 0.00 0.00 0.00 3.32
589 590 5.712917 TCTTGCCTTATTTGGTTTTCCGTAT 59.287 36.000 0.00 0.00 44.36 3.06
615 617 2.038269 CCGGCTATGCGTGGTTGTT 61.038 57.895 0.00 0.00 0.00 2.83
728 731 3.863142 ATAGAACGTCACGGTTAGCTT 57.137 42.857 0.35 0.00 0.00 3.74
745 748 3.825328 AGCTTATCCCATCGATTTGCTT 58.175 40.909 0.00 0.00 35.89 3.91
849 861 3.590643 AGAGTACGGGCTCTTGCTA 57.409 52.632 5.36 0.00 42.69 3.49
924 936 4.680237 CCACACGAGGCTTGCCGA 62.680 66.667 5.95 0.00 0.00 5.54
1086 1229 1.078848 CCTCCTTGCCTCCTTCACG 60.079 63.158 0.00 0.00 0.00 4.35
1305 1448 0.739462 TGACCTTACGCGGCAAGATG 60.739 55.000 20.38 9.81 0.00 2.90
1397 1541 6.069440 TGTTCCCTTGACCATAGATTGATTCT 60.069 38.462 0.00 0.00 38.57 2.40
1474 1618 3.882888 TGCACAAGCTAGCTTTGTACTTT 59.117 39.130 27.34 0.71 42.74 2.66
1496 1640 2.612219 GATTGGTTCCCGCGGCATTG 62.612 60.000 22.85 6.13 0.00 2.82
1502 1646 4.260355 CCCGCGGCATTGCATCAG 62.260 66.667 22.85 0.00 34.15 2.90
1537 1681 2.288395 CCTGGTTTTGCAGATCGCTTTT 60.288 45.455 10.16 0.00 43.06 2.27
1541 1685 2.892373 TTTGCAGATCGCTTTTACCG 57.108 45.000 10.16 0.00 43.06 4.02
1563 1707 3.450578 GAAAGTACGACACAACTGGACA 58.549 45.455 0.00 0.00 0.00 4.02
1564 1708 2.795175 AGTACGACACAACTGGACAG 57.205 50.000 0.00 0.00 0.00 3.51
1567 1711 1.935933 ACGACACAACTGGACAGAAC 58.064 50.000 6.29 0.00 0.00 3.01
1568 1712 1.206132 ACGACACAACTGGACAGAACA 59.794 47.619 6.29 0.00 0.00 3.18
1579 1723 4.244066 CTGGACAGAACATCTCAGTGAAG 58.756 47.826 0.00 0.00 0.00 3.02
1628 1772 6.642950 CGTGAGTCATTATCTATGTTCTTCCC 59.357 42.308 0.00 0.00 35.64 3.97
1630 1774 6.549736 TGAGTCATTATCTATGTTCTTCCCGA 59.450 38.462 0.00 0.00 35.64 5.14
1671 1815 1.134371 GGGAGAACCATGAGTACAGGC 60.134 57.143 0.00 0.00 39.85 4.85
1676 1820 0.686441 ACCATGAGTACAGGCGCCTA 60.686 55.000 32.30 12.88 0.00 3.93
1729 1876 3.182967 CGGTCCTTTCTCTCGAATTCTG 58.817 50.000 3.52 0.00 0.00 3.02
1739 1886 0.817013 TCGAATTCTGCCCAAATGCC 59.183 50.000 3.52 0.00 0.00 4.40
1743 1890 0.041535 ATTCTGCCCAAATGCCTCCA 59.958 50.000 0.00 0.00 0.00 3.86
1753 1900 3.516700 CCAAATGCCTCCAAATTTCTCCT 59.483 43.478 0.00 0.00 0.00 3.69
1824 1972 6.786967 AATTATACAGTACTCGGTCTGGTT 57.213 37.500 0.00 0.00 36.17 3.67
1840 1988 8.425703 TCGGTCTGGTTATGATAATTGATTGTA 58.574 33.333 0.00 0.00 0.00 2.41
1857 2005 2.985896 TGTATGCTAGAAGGTTGGCAC 58.014 47.619 0.00 0.00 37.52 5.01
1867 2015 0.550914 AGGTTGGCACAGACCTTTCA 59.449 50.000 3.47 0.00 43.58 2.69
1871 2019 0.249868 TGGCACAGACCTTTCAGTCG 60.250 55.000 0.00 0.00 41.83 4.18
1883 2031 5.120399 ACCTTTCAGTCGTCAATTGTACAA 58.880 37.500 11.41 11.41 0.00 2.41
1885 2033 6.262273 ACCTTTCAGTCGTCAATTGTACAAAT 59.738 34.615 13.23 0.25 0.00 2.32
1924 2072 9.753674 ATCTTATTGACAAAAAGACTATTCCCA 57.246 29.630 0.00 0.00 32.38 4.37
1925 2073 9.753674 TCTTATTGACAAAAAGACTATTCCCAT 57.246 29.630 0.00 0.00 0.00 4.00
1929 2077 9.710900 ATTGACAAAAAGACTATTCCCATTTTC 57.289 29.630 0.00 0.00 0.00 2.29
1937 2085 6.180472 AGACTATTCCCATTTTCACGACATT 58.820 36.000 0.00 0.00 0.00 2.71
1996 2144 6.729187 GGCAACTGATATGGTTCTTTATCAC 58.271 40.000 0.00 0.00 32.75 3.06
2033 2181 7.343691 CGTAACCACGTGTTAATTAAAGTTCA 58.656 34.615 15.65 0.00 41.00 3.18
2046 2194 9.906660 TTAATTAAAGTTCAAGTGCAGGTATTG 57.093 29.630 0.00 0.00 0.00 1.90
2070 2218 6.102663 GCAGTGAGTCGGATATGCTAATTAT 58.897 40.000 0.00 0.00 0.00 1.28
2116 2264 9.733556 ACTAAATGTTAGTACAATGGATTGACA 57.266 29.630 6.37 0.61 40.14 3.58
2118 2266 8.862325 AAATGTTAGTACAATGGATTGACAGA 57.138 30.769 6.37 0.00 40.14 3.41
2119 2267 9.466497 AAATGTTAGTACAATGGATTGACAGAT 57.534 29.630 6.37 0.00 40.14 2.90
2120 2268 7.848223 TGTTAGTACAATGGATTGACAGATG 57.152 36.000 6.37 0.00 40.14 2.90
2121 2269 7.619965 TGTTAGTACAATGGATTGACAGATGA 58.380 34.615 6.37 0.00 40.14 2.92
2122 2270 8.267183 TGTTAGTACAATGGATTGACAGATGAT 58.733 33.333 6.37 0.00 40.14 2.45
2123 2271 9.764363 GTTAGTACAATGGATTGACAGATGATA 57.236 33.333 6.37 0.00 40.14 2.15
2129 2277 9.857656 ACAATGGATTGACAGATGATATTACTT 57.142 29.630 6.37 0.00 40.14 2.24
2209 2357 2.356535 GGCCTGACACTCATGATTTCCT 60.357 50.000 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.525941 TGGATATCCGCATGTGCATG 58.474 50.000 17.04 7.74 42.21 4.06
22 23 1.881973 GTTGGATATCCGCATGTGCAT 59.118 47.619 17.04 0.00 42.21 3.96
23 24 1.308047 GTTGGATATCCGCATGTGCA 58.692 50.000 17.04 0.00 42.21 4.57
24 25 0.593128 GGTTGGATATCCGCATGTGC 59.407 55.000 17.04 0.00 39.43 4.57
25 26 0.867746 CGGTTGGATATCCGCATGTG 59.132 55.000 17.04 0.00 40.28 3.21
26 27 0.250295 CCGGTTGGATATCCGCATGT 60.250 55.000 17.04 0.00 44.63 3.21
27 28 0.955428 CCCGGTTGGATATCCGCATG 60.955 60.000 17.04 7.03 44.63 4.06
28 29 1.374947 CCCGGTTGGATATCCGCAT 59.625 57.895 17.04 0.00 44.63 4.73
29 30 2.825982 CCCGGTTGGATATCCGCA 59.174 61.111 17.04 3.26 44.63 5.69
30 31 2.668550 GCCCGGTTGGATATCCGC 60.669 66.667 17.04 11.79 44.63 5.54
31 32 2.032071 GGCCCGGTTGGATATCCG 59.968 66.667 17.04 5.45 45.42 4.18
32 33 2.032071 CGGCCCGGTTGGATATCC 59.968 66.667 15.39 15.39 37.49 2.59
33 34 2.032071 CCGGCCCGGTTGGATATC 59.968 66.667 15.86 0.00 42.73 1.63
46 47 4.776647 GTCGCAACATTGGCCGGC 62.777 66.667 21.18 21.18 0.00 6.13
47 48 3.055719 AGTCGCAACATTGGCCGG 61.056 61.111 0.00 0.00 0.00 6.13
48 49 1.295357 TACAGTCGCAACATTGGCCG 61.295 55.000 0.00 0.00 0.00 6.13
49 50 0.447801 CTACAGTCGCAACATTGGCC 59.552 55.000 0.00 0.00 0.00 5.36
50 51 1.438651 TCTACAGTCGCAACATTGGC 58.561 50.000 0.00 0.00 0.00 4.52
51 52 3.067106 AGTTCTACAGTCGCAACATTGG 58.933 45.455 0.00 0.00 0.00 3.16
52 53 5.839262 TTAGTTCTACAGTCGCAACATTG 57.161 39.130 0.00 0.00 0.00 2.82
53 54 6.854496 TTTTAGTTCTACAGTCGCAACATT 57.146 33.333 0.00 0.00 0.00 2.71
54 55 6.854496 TTTTTAGTTCTACAGTCGCAACAT 57.146 33.333 0.00 0.00 0.00 2.71
76 77 4.411256 TCCCTACAGAACGTGACTTTTT 57.589 40.909 0.00 0.00 0.00 1.94
77 78 4.039973 TGATCCCTACAGAACGTGACTTTT 59.960 41.667 0.00 0.00 0.00 2.27
78 79 3.576982 TGATCCCTACAGAACGTGACTTT 59.423 43.478 0.00 0.00 0.00 2.66
79 80 3.162666 TGATCCCTACAGAACGTGACTT 58.837 45.455 0.00 0.00 0.00 3.01
80 81 2.803956 TGATCCCTACAGAACGTGACT 58.196 47.619 0.00 0.00 0.00 3.41
81 82 3.512680 CTTGATCCCTACAGAACGTGAC 58.487 50.000 0.00 0.00 0.00 3.67
82 83 2.094182 GCTTGATCCCTACAGAACGTGA 60.094 50.000 0.00 0.00 0.00 4.35
83 84 2.271800 GCTTGATCCCTACAGAACGTG 58.728 52.381 0.00 0.00 0.00 4.49
84 85 1.135083 CGCTTGATCCCTACAGAACGT 60.135 52.381 0.00 0.00 0.00 3.99
85 86 1.560923 CGCTTGATCCCTACAGAACG 58.439 55.000 0.00 0.00 0.00 3.95
86 87 1.291132 GCGCTTGATCCCTACAGAAC 58.709 55.000 0.00 0.00 0.00 3.01
87 88 0.901827 TGCGCTTGATCCCTACAGAA 59.098 50.000 9.73 0.00 0.00 3.02
88 89 0.461548 CTGCGCTTGATCCCTACAGA 59.538 55.000 9.73 0.00 0.00 3.41
89 90 0.531532 CCTGCGCTTGATCCCTACAG 60.532 60.000 9.73 0.00 0.00 2.74
90 91 1.264749 ACCTGCGCTTGATCCCTACA 61.265 55.000 9.73 0.00 0.00 2.74
91 92 0.811616 CACCTGCGCTTGATCCCTAC 60.812 60.000 9.73 0.00 0.00 3.18
92 93 1.522092 CACCTGCGCTTGATCCCTA 59.478 57.895 9.73 0.00 0.00 3.53
93 94 2.270205 CACCTGCGCTTGATCCCT 59.730 61.111 9.73 0.00 0.00 4.20
94 95 3.512516 GCACCTGCGCTTGATCCC 61.513 66.667 9.73 0.00 0.00 3.85
95 96 2.467826 GAGCACCTGCGCTTGATCC 61.468 63.158 9.73 0.00 44.01 3.36
96 97 2.467826 GGAGCACCTGCGCTTGATC 61.468 63.158 9.73 11.32 44.01 2.92
97 98 2.437359 GGAGCACCTGCGCTTGAT 60.437 61.111 9.73 1.06 44.01 2.57
98 99 2.753009 ATTGGAGCACCTGCGCTTGA 62.753 55.000 9.73 0.00 44.01 3.02
99 100 1.870055 AATTGGAGCACCTGCGCTTG 61.870 55.000 9.73 4.24 44.01 4.01
100 101 1.589716 GAATTGGAGCACCTGCGCTT 61.590 55.000 9.73 0.00 44.01 4.68
104 105 3.255642 TGTTTTAGAATTGGAGCACCTGC 59.744 43.478 0.71 0.00 42.49 4.85
105 106 4.321230 GGTGTTTTAGAATTGGAGCACCTG 60.321 45.833 0.71 0.00 41.16 4.00
106 107 3.826729 GGTGTTTTAGAATTGGAGCACCT 59.173 43.478 0.71 0.00 41.16 4.00
107 108 3.826729 AGGTGTTTTAGAATTGGAGCACC 59.173 43.478 0.00 0.00 43.74 5.01
108 109 4.798574 CAGGTGTTTTAGAATTGGAGCAC 58.201 43.478 0.00 0.00 0.00 4.40
109 110 3.255642 GCAGGTGTTTTAGAATTGGAGCA 59.744 43.478 0.00 0.00 0.00 4.26
110 111 3.507622 AGCAGGTGTTTTAGAATTGGAGC 59.492 43.478 0.00 0.00 0.00 4.70
111 112 7.396540 AATAGCAGGTGTTTTAGAATTGGAG 57.603 36.000 0.00 0.00 0.00 3.86
112 113 8.107095 AGTAATAGCAGGTGTTTTAGAATTGGA 58.893 33.333 0.00 0.00 0.00 3.53
113 114 8.281212 AGTAATAGCAGGTGTTTTAGAATTGG 57.719 34.615 0.00 0.00 0.00 3.16
115 116 9.614792 CCTAGTAATAGCAGGTGTTTTAGAATT 57.385 33.333 0.00 0.00 0.00 2.17
116 117 8.769359 ACCTAGTAATAGCAGGTGTTTTAGAAT 58.231 33.333 0.00 0.00 41.18 2.40
117 118 8.142485 ACCTAGTAATAGCAGGTGTTTTAGAA 57.858 34.615 0.00 0.00 41.18 2.10
118 119 7.618512 AGACCTAGTAATAGCAGGTGTTTTAGA 59.381 37.037 0.00 0.00 42.78 2.10
119 120 7.707035 CAGACCTAGTAATAGCAGGTGTTTTAG 59.293 40.741 0.00 0.00 42.78 1.85
120 121 7.364408 CCAGACCTAGTAATAGCAGGTGTTTTA 60.364 40.741 0.00 0.00 42.78 1.52
121 122 6.407202 CAGACCTAGTAATAGCAGGTGTTTT 58.593 40.000 0.00 0.00 42.78 2.43
122 123 5.104900 CCAGACCTAGTAATAGCAGGTGTTT 60.105 44.000 0.00 0.00 42.78 2.83
123 124 4.406003 CCAGACCTAGTAATAGCAGGTGTT 59.594 45.833 0.00 0.00 42.78 3.32
124 125 3.961408 CCAGACCTAGTAATAGCAGGTGT 59.039 47.826 0.00 0.00 42.78 4.16
125 126 3.322254 CCCAGACCTAGTAATAGCAGGTG 59.678 52.174 0.00 0.00 42.78 4.00
126 127 3.577919 CCCAGACCTAGTAATAGCAGGT 58.422 50.000 0.00 0.00 45.42 4.00
127 128 2.300437 GCCCAGACCTAGTAATAGCAGG 59.700 54.545 0.00 0.00 35.45 4.85
128 129 2.029828 CGCCCAGACCTAGTAATAGCAG 60.030 54.545 0.00 0.00 0.00 4.24
129 130 1.961394 CGCCCAGACCTAGTAATAGCA 59.039 52.381 0.00 0.00 0.00 3.49
130 131 1.962100 ACGCCCAGACCTAGTAATAGC 59.038 52.381 0.00 0.00 0.00 2.97
131 132 3.304525 CGAACGCCCAGACCTAGTAATAG 60.305 52.174 0.00 0.00 0.00 1.73
132 133 2.620115 CGAACGCCCAGACCTAGTAATA 59.380 50.000 0.00 0.00 0.00 0.98
133 134 1.407979 CGAACGCCCAGACCTAGTAAT 59.592 52.381 0.00 0.00 0.00 1.89
134 135 0.813184 CGAACGCCCAGACCTAGTAA 59.187 55.000 0.00 0.00 0.00 2.24
135 136 1.033746 CCGAACGCCCAGACCTAGTA 61.034 60.000 0.00 0.00 0.00 1.82
136 137 2.348888 CCGAACGCCCAGACCTAGT 61.349 63.158 0.00 0.00 0.00 2.57
137 138 1.033746 TACCGAACGCCCAGACCTAG 61.034 60.000 0.00 0.00 0.00 3.02
138 139 1.001020 TACCGAACGCCCAGACCTA 60.001 57.895 0.00 0.00 0.00 3.08
139 140 2.283388 TACCGAACGCCCAGACCT 60.283 61.111 0.00 0.00 0.00 3.85
140 141 1.880819 TTCTACCGAACGCCCAGACC 61.881 60.000 0.00 0.00 0.00 3.85
141 142 0.037975 TTTCTACCGAACGCCCAGAC 60.038 55.000 0.00 0.00 0.00 3.51
142 143 0.037975 GTTTCTACCGAACGCCCAGA 60.038 55.000 0.00 0.00 0.00 3.86
143 144 1.017701 GGTTTCTACCGAACGCCCAG 61.018 60.000 0.00 0.00 34.01 4.45
144 145 1.004679 GGTTTCTACCGAACGCCCA 60.005 57.895 0.00 0.00 34.01 5.36
145 146 3.880591 GGTTTCTACCGAACGCCC 58.119 61.111 0.00 0.00 34.01 6.13
158 159 9.349145 CCGAATTCATAAAATAACTTTCGGTTT 57.651 29.630 6.22 0.00 45.58 3.27
159 160 8.905103 CCGAATTCATAAAATAACTTTCGGTT 57.095 30.769 6.22 0.00 45.58 4.44
170 171 9.139174 CACTTTTGCTAACCGAATTCATAAAAT 57.861 29.630 6.22 0.00 0.00 1.82
171 172 8.353684 TCACTTTTGCTAACCGAATTCATAAAA 58.646 29.630 6.22 1.94 0.00 1.52
172 173 7.877003 TCACTTTTGCTAACCGAATTCATAAA 58.123 30.769 6.22 0.00 0.00 1.40
173 174 7.441890 TCACTTTTGCTAACCGAATTCATAA 57.558 32.000 6.22 0.00 0.00 1.90
174 175 7.441890 TTCACTTTTGCTAACCGAATTCATA 57.558 32.000 6.22 0.00 0.00 2.15
175 176 5.957842 TCACTTTTGCTAACCGAATTCAT 57.042 34.783 6.22 0.00 0.00 2.57
176 177 5.759506 TTCACTTTTGCTAACCGAATTCA 57.240 34.783 6.22 0.00 0.00 2.57
177 178 6.074516 GGTTTTCACTTTTGCTAACCGAATTC 60.075 38.462 0.00 0.00 30.83 2.17
178 179 5.751509 GGTTTTCACTTTTGCTAACCGAATT 59.248 36.000 0.00 0.00 30.83 2.17
179 180 5.286438 GGTTTTCACTTTTGCTAACCGAAT 58.714 37.500 0.00 0.00 30.83 3.34
180 181 4.674475 GGTTTTCACTTTTGCTAACCGAA 58.326 39.130 0.00 0.00 30.83 4.30
181 182 4.295857 GGTTTTCACTTTTGCTAACCGA 57.704 40.909 0.00 0.00 30.83 4.69
182 183 3.040099 CGGTTTTCACTTTTGCTAACCG 58.960 45.455 9.43 9.43 44.99 4.44
183 184 4.295857 TCGGTTTTCACTTTTGCTAACC 57.704 40.909 0.00 0.00 34.76 2.85
184 185 6.822073 ATTTCGGTTTTCACTTTTGCTAAC 57.178 33.333 0.00 0.00 0.00 2.34
185 186 8.809478 GTTAATTTCGGTTTTCACTTTTGCTAA 58.191 29.630 0.00 0.00 0.00 3.09
186 187 7.974501 TGTTAATTTCGGTTTTCACTTTTGCTA 59.025 29.630 0.00 0.00 0.00 3.49
187 188 6.814146 TGTTAATTTCGGTTTTCACTTTTGCT 59.186 30.769 0.00 0.00 0.00 3.91
188 189 6.994992 TGTTAATTTCGGTTTTCACTTTTGC 58.005 32.000 0.00 0.00 0.00 3.68
189 190 9.813080 TTTTGTTAATTTCGGTTTTCACTTTTG 57.187 25.926 0.00 0.00 0.00 2.44
219 220 9.733219 CGGTTAACTAAATTTTTGGTTAGTTGA 57.267 29.630 15.59 7.57 42.41 3.18
220 221 9.733219 TCGGTTAACTAAATTTTTGGTTAGTTG 57.267 29.630 15.59 6.38 42.41 3.16
248 249 2.765122 ACCGAATACCGAACCGAAAAA 58.235 42.857 0.00 0.00 41.76 1.94
249 250 2.453983 ACCGAATACCGAACCGAAAA 57.546 45.000 0.00 0.00 41.76 2.29
250 251 2.453983 AACCGAATACCGAACCGAAA 57.546 45.000 0.00 0.00 41.76 3.46
251 252 2.453983 AAACCGAATACCGAACCGAA 57.546 45.000 0.00 0.00 41.76 4.30
252 253 2.453983 AAAACCGAATACCGAACCGA 57.546 45.000 0.00 0.00 41.76 4.69
253 254 2.029606 GCTAAAACCGAATACCGAACCG 59.970 50.000 0.00 0.00 41.76 4.44
254 255 2.352651 GGCTAAAACCGAATACCGAACC 59.647 50.000 0.00 0.00 41.76 3.62
255 256 3.663464 GGCTAAAACCGAATACCGAAC 57.337 47.619 0.00 0.00 41.76 3.95
266 267 2.092807 TGGTCCCTAATCGGCTAAAACC 60.093 50.000 0.00 0.00 0.00 3.27
267 268 3.271055 TGGTCCCTAATCGGCTAAAAC 57.729 47.619 0.00 0.00 0.00 2.43
268 269 5.836024 ATATGGTCCCTAATCGGCTAAAA 57.164 39.130 0.00 0.00 0.00 1.52
269 270 5.781306 TGTATATGGTCCCTAATCGGCTAAA 59.219 40.000 0.00 0.00 0.00 1.85
270 271 5.335261 TGTATATGGTCCCTAATCGGCTAA 58.665 41.667 0.00 0.00 0.00 3.09
271 272 4.938028 TGTATATGGTCCCTAATCGGCTA 58.062 43.478 0.00 0.00 0.00 3.93
272 273 3.769844 CTGTATATGGTCCCTAATCGGCT 59.230 47.826 0.00 0.00 0.00 5.52
273 274 3.767673 TCTGTATATGGTCCCTAATCGGC 59.232 47.826 0.00 0.00 0.00 5.54
274 275 5.995565 TTCTGTATATGGTCCCTAATCGG 57.004 43.478 0.00 0.00 0.00 4.18
275 276 7.214381 TGTTTTCTGTATATGGTCCCTAATCG 58.786 38.462 0.00 0.00 0.00 3.34
280 281 9.936329 AAAATATGTTTTCTGTATATGGTCCCT 57.064 29.630 0.00 0.00 32.14 4.20
291 292 9.474920 CACATGGTGTAAAAATATGTTTTCTGT 57.525 29.630 0.25 0.00 36.55 3.41
292 293 9.474920 ACACATGGTGTAAAAATATGTTTTCTG 57.525 29.630 0.00 0.00 45.56 3.02
300 301 9.487790 CCAAGAAAACACATGGTGTAAAAATAT 57.512 29.630 2.00 0.00 46.79 1.28
301 302 7.439655 GCCAAGAAAACACATGGTGTAAAAATA 59.560 33.333 2.00 0.00 46.79 1.40
302 303 6.259829 GCCAAGAAAACACATGGTGTAAAAAT 59.740 34.615 2.00 0.00 46.79 1.82
303 304 5.582665 GCCAAGAAAACACATGGTGTAAAAA 59.417 36.000 2.00 0.00 46.79 1.94
304 305 5.112686 GCCAAGAAAACACATGGTGTAAAA 58.887 37.500 2.00 0.00 46.79 1.52
305 306 4.442192 GGCCAAGAAAACACATGGTGTAAA 60.442 41.667 0.00 0.00 46.79 2.01
306 307 3.068873 GGCCAAGAAAACACATGGTGTAA 59.931 43.478 0.00 0.00 46.79 2.41
307 308 2.625790 GGCCAAGAAAACACATGGTGTA 59.374 45.455 0.00 0.00 46.79 2.90
309 310 1.270252 GGGCCAAGAAAACACATGGTG 60.270 52.381 4.39 0.00 39.75 4.17
310 311 1.047801 GGGCCAAGAAAACACATGGT 58.952 50.000 4.39 0.00 35.34 3.55
311 312 1.047002 TGGGCCAAGAAAACACATGG 58.953 50.000 2.13 0.00 36.00 3.66
312 313 2.758009 CTTGGGCCAAGAAAACACATG 58.242 47.619 37.45 10.35 43.42 3.21
313 314 1.070601 GCTTGGGCCAAGAAAACACAT 59.929 47.619 42.69 0.00 43.42 3.21
314 315 0.463620 GCTTGGGCCAAGAAAACACA 59.536 50.000 42.69 9.59 43.42 3.72
315 316 0.752658 AGCTTGGGCCAAGAAAACAC 59.247 50.000 42.69 26.27 43.42 3.32
316 317 2.364002 GTTAGCTTGGGCCAAGAAAACA 59.636 45.455 42.69 22.03 43.42 2.83
317 318 2.628178 AGTTAGCTTGGGCCAAGAAAAC 59.372 45.455 42.69 37.67 43.42 2.43
318 319 2.627699 CAGTTAGCTTGGGCCAAGAAAA 59.372 45.455 42.69 31.70 43.42 2.29
319 320 2.238521 CAGTTAGCTTGGGCCAAGAAA 58.761 47.619 42.69 32.01 43.42 2.52
320 321 1.909700 CAGTTAGCTTGGGCCAAGAA 58.090 50.000 42.69 28.55 43.42 2.52
321 322 0.609131 GCAGTTAGCTTGGGCCAAGA 60.609 55.000 42.69 24.77 43.42 3.02
322 323 1.885871 GCAGTTAGCTTGGGCCAAG 59.114 57.895 36.47 36.47 43.57 3.61
323 324 4.095590 GCAGTTAGCTTGGGCCAA 57.904 55.556 19.68 19.68 41.15 4.52
332 333 2.961522 TAACGTGCAAAGCAGTTAGC 57.038 45.000 0.00 0.00 40.08 3.09
333 334 4.154195 AGGAATAACGTGCAAAGCAGTTAG 59.846 41.667 14.47 2.86 40.08 2.34
334 335 4.069304 AGGAATAACGTGCAAAGCAGTTA 58.931 39.130 12.73 12.73 40.08 2.24
335 336 2.884639 AGGAATAACGTGCAAAGCAGTT 59.115 40.909 0.00 10.16 40.08 3.16
336 337 2.504367 AGGAATAACGTGCAAAGCAGT 58.496 42.857 0.00 0.00 40.08 4.40
337 338 3.181510 GGTAGGAATAACGTGCAAAGCAG 60.182 47.826 0.00 0.00 40.08 4.24
338 339 2.745281 GGTAGGAATAACGTGCAAAGCA 59.255 45.455 0.00 0.00 35.60 3.91
339 340 3.007635 AGGTAGGAATAACGTGCAAAGC 58.992 45.455 0.00 0.00 0.00 3.51
340 341 4.250464 TCAGGTAGGAATAACGTGCAAAG 58.750 43.478 0.00 0.00 33.78 2.77
341 342 4.250464 CTCAGGTAGGAATAACGTGCAAA 58.750 43.478 0.00 0.00 33.78 3.68
342 343 3.857052 CTCAGGTAGGAATAACGTGCAA 58.143 45.455 0.00 0.00 33.78 4.08
343 344 2.418197 GCTCAGGTAGGAATAACGTGCA 60.418 50.000 0.00 0.00 33.78 4.57
344 345 2.202566 GCTCAGGTAGGAATAACGTGC 58.797 52.381 0.00 0.00 33.78 5.34
345 346 2.431057 AGGCTCAGGTAGGAATAACGTG 59.569 50.000 0.00 0.00 34.78 4.49
346 347 2.431057 CAGGCTCAGGTAGGAATAACGT 59.569 50.000 0.00 0.00 0.00 3.99
347 348 2.803492 GCAGGCTCAGGTAGGAATAACG 60.803 54.545 0.00 0.00 0.00 3.18
348 349 2.485657 GGCAGGCTCAGGTAGGAATAAC 60.486 54.545 0.00 0.00 0.00 1.89
349 350 1.768870 GGCAGGCTCAGGTAGGAATAA 59.231 52.381 0.00 0.00 0.00 1.40
350 351 1.062121 AGGCAGGCTCAGGTAGGAATA 60.062 52.381 0.00 0.00 0.00 1.75
351 352 0.327000 AGGCAGGCTCAGGTAGGAAT 60.327 55.000 0.00 0.00 0.00 3.01
352 353 0.547712 AAGGCAGGCTCAGGTAGGAA 60.548 55.000 0.00 0.00 0.00 3.36
353 354 0.978146 GAAGGCAGGCTCAGGTAGGA 60.978 60.000 0.00 0.00 0.00 2.94
354 355 0.980231 AGAAGGCAGGCTCAGGTAGG 60.980 60.000 0.00 0.00 0.00 3.18
355 356 0.908198 AAGAAGGCAGGCTCAGGTAG 59.092 55.000 0.00 0.00 0.00 3.18
356 357 2.247699 TAAGAAGGCAGGCTCAGGTA 57.752 50.000 0.00 0.00 0.00 3.08
357 358 1.280421 CTTAAGAAGGCAGGCTCAGGT 59.720 52.381 0.00 0.00 0.00 4.00
358 359 1.280421 ACTTAAGAAGGCAGGCTCAGG 59.720 52.381 10.09 0.00 0.00 3.86
359 360 2.777832 ACTTAAGAAGGCAGGCTCAG 57.222 50.000 10.09 0.00 0.00 3.35
360 361 3.307480 GGTTACTTAAGAAGGCAGGCTCA 60.307 47.826 10.09 0.00 0.00 4.26
361 362 3.271729 GGTTACTTAAGAAGGCAGGCTC 58.728 50.000 10.09 0.00 0.00 4.70
362 363 2.642807 TGGTTACTTAAGAAGGCAGGCT 59.357 45.455 10.09 0.00 0.00 4.58
363 364 3.067684 TGGTTACTTAAGAAGGCAGGC 57.932 47.619 10.09 0.00 0.00 4.85
364 365 5.501156 AGATTGGTTACTTAAGAAGGCAGG 58.499 41.667 10.09 0.00 0.00 4.85
365 366 6.092807 GTGAGATTGGTTACTTAAGAAGGCAG 59.907 42.308 10.09 0.00 0.00 4.85
366 367 5.938125 GTGAGATTGGTTACTTAAGAAGGCA 59.062 40.000 10.09 0.00 0.00 4.75
367 368 5.354513 GGTGAGATTGGTTACTTAAGAAGGC 59.645 44.000 10.09 0.00 0.00 4.35
368 369 5.581085 CGGTGAGATTGGTTACTTAAGAAGG 59.419 44.000 10.09 0.00 0.00 3.46
369 370 6.164176 ACGGTGAGATTGGTTACTTAAGAAG 58.836 40.000 10.09 0.00 0.00 2.85
370 371 6.105397 ACGGTGAGATTGGTTACTTAAGAA 57.895 37.500 10.09 0.00 0.00 2.52
371 372 5.733620 ACGGTGAGATTGGTTACTTAAGA 57.266 39.130 10.09 0.00 0.00 2.10
372 373 6.425721 TGAAACGGTGAGATTGGTTACTTAAG 59.574 38.462 0.00 0.00 0.00 1.85
373 374 6.289834 TGAAACGGTGAGATTGGTTACTTAA 58.710 36.000 0.00 0.00 0.00 1.85
374 375 5.856156 TGAAACGGTGAGATTGGTTACTTA 58.144 37.500 0.00 0.00 0.00 2.24
375 376 4.710324 TGAAACGGTGAGATTGGTTACTT 58.290 39.130 0.00 0.00 0.00 2.24
376 377 4.345859 TGAAACGGTGAGATTGGTTACT 57.654 40.909 0.00 0.00 0.00 2.24
377 378 4.094442 GGATGAAACGGTGAGATTGGTTAC 59.906 45.833 0.00 0.00 0.00 2.50
378 379 4.258543 GGATGAAACGGTGAGATTGGTTA 58.741 43.478 0.00 0.00 0.00 2.85
379 380 3.081804 GGATGAAACGGTGAGATTGGTT 58.918 45.455 0.00 0.00 0.00 3.67
380 381 2.618045 GGGATGAAACGGTGAGATTGGT 60.618 50.000 0.00 0.00 0.00 3.67
381 382 2.017049 GGGATGAAACGGTGAGATTGG 58.983 52.381 0.00 0.00 0.00 3.16
382 383 2.017049 GGGGATGAAACGGTGAGATTG 58.983 52.381 0.00 0.00 0.00 2.67
383 384 1.064685 GGGGGATGAAACGGTGAGATT 60.065 52.381 0.00 0.00 0.00 2.40
384 385 0.546598 GGGGGATGAAACGGTGAGAT 59.453 55.000 0.00 0.00 0.00 2.75
385 386 0.838554 TGGGGGATGAAACGGTGAGA 60.839 55.000 0.00 0.00 0.00 3.27
386 387 0.037590 TTGGGGGATGAAACGGTGAG 59.962 55.000 0.00 0.00 0.00 3.51
387 388 0.701731 ATTGGGGGATGAAACGGTGA 59.298 50.000 0.00 0.00 0.00 4.02
388 389 1.102978 GATTGGGGGATGAAACGGTG 58.897 55.000 0.00 0.00 0.00 4.94
389 390 0.999712 AGATTGGGGGATGAAACGGT 59.000 50.000 0.00 0.00 0.00 4.83
390 391 2.143876 AAGATTGGGGGATGAAACGG 57.856 50.000 0.00 0.00 0.00 4.44
391 392 3.356290 AGAAAGATTGGGGGATGAAACG 58.644 45.455 0.00 0.00 0.00 3.60
392 393 4.604156 AGAGAAAGATTGGGGGATGAAAC 58.396 43.478 0.00 0.00 0.00 2.78
393 394 4.953781 AGAGAAAGATTGGGGGATGAAA 57.046 40.909 0.00 0.00 0.00 2.69
394 395 6.596869 ATTAGAGAAAGATTGGGGGATGAA 57.403 37.500 0.00 0.00 0.00 2.57
395 396 7.705912 TTATTAGAGAAAGATTGGGGGATGA 57.294 36.000 0.00 0.00 0.00 2.92
443 444 2.296190 GTGAACCCCACAAAGTCAATCC 59.704 50.000 0.00 0.00 45.03 3.01
456 457 1.445871 GTATTGTGACGGTGAACCCC 58.554 55.000 0.00 0.00 0.00 4.95
476 477 5.048153 AGCTTAAATTCACGGAAAGAAGC 57.952 39.130 15.06 15.06 36.12 3.86
478 479 7.033530 TGAAAGCTTAAATTCACGGAAAGAA 57.966 32.000 0.00 0.00 30.94 2.52
480 481 6.438763 ACTGAAAGCTTAAATTCACGGAAAG 58.561 36.000 0.00 0.00 37.60 2.62
481 482 6.385649 ACTGAAAGCTTAAATTCACGGAAA 57.614 33.333 0.00 0.00 37.60 3.13
483 484 6.262273 AGAAACTGAAAGCTTAAATTCACGGA 59.738 34.615 0.00 0.00 37.60 4.69
484 485 6.438763 AGAAACTGAAAGCTTAAATTCACGG 58.561 36.000 0.00 0.00 37.60 4.94
495 496 7.329471 GTGTTGAAGAAAAAGAAACTGAAAGCT 59.671 33.333 0.00 0.00 37.60 3.74
507 508 5.050702 GGAGAGAGACGTGTTGAAGAAAAAG 60.051 44.000 0.00 0.00 0.00 2.27
510 511 3.243771 GGGAGAGAGACGTGTTGAAGAAA 60.244 47.826 0.00 0.00 0.00 2.52
521 522 3.319689 GGGAAAGATTAGGGAGAGAGACG 59.680 52.174 0.00 0.00 0.00 4.18
728 731 4.687901 TGAGAAGCAAATCGATGGGATA 57.312 40.909 0.00 0.00 34.08 2.59
745 748 7.257790 TCTATTCTCCTGGTTTGATTTGAGA 57.742 36.000 0.00 0.00 0.00 3.27
754 757 7.621796 ACGATTAGTTTCTATTCTCCTGGTTT 58.378 34.615 0.00 0.00 0.00 3.27
849 861 2.370445 ATGGCAGGCGAGGCTTAGT 61.370 57.895 0.00 0.00 34.73 2.24
924 936 2.172483 AACTCCTCGCAATCGCTGGT 62.172 55.000 0.00 0.00 35.30 4.00
979 991 3.047280 GTGCGACGGTCATTGCCA 61.047 61.111 9.10 0.00 0.00 4.92
1086 1229 1.218316 CTCGTTGAGTGGGTAGCCC 59.782 63.158 8.85 0.62 45.71 5.19
1239 1382 1.107114 AGAGGTGTGTGATCGCTAGG 58.893 55.000 7.94 0.00 0.00 3.02
1305 1448 2.737039 GCTAGCTCCTCTACACTTGCAC 60.737 54.545 7.70 0.00 32.30 4.57
1314 1457 3.824001 ATCCATCAGCTAGCTCCTCTA 57.176 47.619 16.15 0.76 0.00 2.43
1397 1541 0.451383 GCGCAAAGTACATCATGCCA 59.549 50.000 0.30 0.00 35.41 4.92
1430 1574 1.747355 CCAGATCAATCCACCTGCAAC 59.253 52.381 0.00 0.00 0.00 4.17
1496 1640 1.372087 CTCCGTTTGCTCCCTGATGC 61.372 60.000 0.00 0.00 0.00 3.91
1502 1646 2.747855 CAGGCTCCGTTTGCTCCC 60.748 66.667 0.00 0.00 0.00 4.30
1537 1681 2.622942 AGTTGTGTCGTACTTTCCGGTA 59.377 45.455 0.00 0.00 0.00 4.02
1541 1685 2.798847 GTCCAGTTGTGTCGTACTTTCC 59.201 50.000 0.00 0.00 0.00 3.13
1563 1707 5.221722 TGCTTTACCTTCACTGAGATGTTCT 60.222 40.000 0.00 0.00 0.00 3.01
1564 1708 4.997395 TGCTTTACCTTCACTGAGATGTTC 59.003 41.667 0.00 0.00 0.00 3.18
1567 1711 4.318332 TGTGCTTTACCTTCACTGAGATG 58.682 43.478 0.00 0.00 0.00 2.90
1568 1712 4.040952 ACTGTGCTTTACCTTCACTGAGAT 59.959 41.667 0.00 0.00 34.91 2.75
1579 1723 1.066430 TGATCCGGACTGTGCTTTACC 60.066 52.381 6.12 0.00 0.00 2.85
1628 1772 0.179100 AGGCGACTGTTGATCCATCG 60.179 55.000 0.00 0.00 41.13 3.84
1630 1774 2.496899 AAAGGCGACTGTTGATCCAT 57.503 45.000 0.00 0.00 42.68 3.41
1671 1815 2.846039 TCTCTCTTAAAGCGTAGGCG 57.154 50.000 1.05 0.00 46.35 5.52
1676 1820 3.059800 GCGTTGTTTCTCTCTTAAAGCGT 60.060 43.478 0.00 0.00 0.00 5.07
1729 1876 2.026915 AGAAATTTGGAGGCATTTGGGC 60.027 45.455 0.00 0.00 43.80 5.36
1739 1886 5.205759 AGCAAACAAGGAGAAATTTGGAG 57.794 39.130 0.00 0.00 33.55 3.86
1809 1957 7.287005 TCAATTATCATAACCAGACCGAGTACT 59.713 37.037 0.00 0.00 0.00 2.73
1840 1988 1.630369 TCTGTGCCAACCTTCTAGCAT 59.370 47.619 0.00 0.00 37.60 3.79
1845 1993 2.544768 AGGTCTGTGCCAACCTTCT 58.455 52.632 0.00 0.00 43.45 2.85
1857 2005 3.809832 ACAATTGACGACTGAAAGGTCTG 59.190 43.478 13.59 0.00 39.30 3.51
1867 2015 7.678194 CAAACAATTTGTACAATTGACGACT 57.322 32.000 24.78 9.57 39.36 4.18
1883 2031 9.814899 TGTCAATAAGATTGAACACAAACAATT 57.185 25.926 3.53 0.00 36.94 2.32
1885 2033 9.645059 TTTGTCAATAAGATTGAACACAAACAA 57.355 25.926 3.53 1.10 0.00 2.83
1904 2052 8.700051 TGAAAATGGGAATAGTCTTTTTGTCAA 58.300 29.630 0.00 0.00 0.00 3.18
1923 2071 6.429624 TCTGTTCTTCAATGTCGTGAAAATG 58.570 36.000 0.00 0.00 37.08 2.32
1924 2072 6.293626 CCTCTGTTCTTCAATGTCGTGAAAAT 60.294 38.462 0.00 0.00 37.08 1.82
1925 2073 5.007626 CCTCTGTTCTTCAATGTCGTGAAAA 59.992 40.000 0.00 0.00 37.08 2.29
1926 2074 4.511454 CCTCTGTTCTTCAATGTCGTGAAA 59.489 41.667 0.00 0.00 37.08 2.69
1927 2075 4.058124 CCTCTGTTCTTCAATGTCGTGAA 58.942 43.478 0.00 0.00 36.15 3.18
1928 2076 3.554960 CCCTCTGTTCTTCAATGTCGTGA 60.555 47.826 0.00 0.00 0.00 4.35
1929 2077 2.738846 CCCTCTGTTCTTCAATGTCGTG 59.261 50.000 0.00 0.00 0.00 4.35
1937 2085 4.136796 CACATGAAACCCTCTGTTCTTCA 58.863 43.478 0.00 0.00 35.67 3.02
1982 2130 3.124636 GTCGCAACGTGATAAAGAACCAT 59.875 43.478 0.00 0.00 0.00 3.55
1991 2139 2.054687 ACGAAAGTCGCAACGTGATA 57.945 45.000 0.00 0.00 45.12 2.15
1996 2144 0.854062 TGGTTACGAAAGTCGCAACG 59.146 50.000 7.45 0.00 44.58 4.10
2046 2194 3.371102 TTAGCATATCCGACTCACTGC 57.629 47.619 0.00 0.00 0.00 4.40
2051 2199 9.856488 TCACTTAATAATTAGCATATCCGACTC 57.144 33.333 0.00 0.00 0.00 3.36
2096 2244 7.619965 TCATCTGTCAATCCATTGTACTAACA 58.380 34.615 0.00 0.00 38.84 2.41
2151 2299 9.860898 CATCTGATTGGTATCTTCACGATATTA 57.139 33.333 0.00 0.00 36.99 0.98
2152 2300 8.588472 TCATCTGATTGGTATCTTCACGATATT 58.412 33.333 0.00 0.00 36.99 1.28
2153 2301 8.127150 TCATCTGATTGGTATCTTCACGATAT 57.873 34.615 0.00 0.00 36.99 1.63
2154 2302 7.524717 TCATCTGATTGGTATCTTCACGATA 57.475 36.000 0.00 0.00 33.48 2.92
2155 2303 6.410942 TCATCTGATTGGTATCTTCACGAT 57.589 37.500 0.00 0.00 36.11 3.73
2156 2304 5.852282 TCATCTGATTGGTATCTTCACGA 57.148 39.130 0.00 0.00 0.00 4.35
2157 2305 8.768957 AATATCATCTGATTGGTATCTTCACG 57.231 34.615 0.00 0.00 36.05 4.35
2163 2311 9.388506 CCCAAGTAATATCATCTGATTGGTATC 57.611 37.037 0.00 0.00 36.05 2.24
2164 2312 7.831193 GCCCAAGTAATATCATCTGATTGGTAT 59.169 37.037 0.00 0.00 36.05 2.73
2165 2313 7.168219 GCCCAAGTAATATCATCTGATTGGTA 58.832 38.462 0.00 0.00 36.05 3.25
2166 2314 6.006449 GCCCAAGTAATATCATCTGATTGGT 58.994 40.000 0.00 0.00 36.05 3.67
2167 2315 5.416952 GGCCCAAGTAATATCATCTGATTGG 59.583 44.000 0.00 0.17 36.05 3.16
2168 2316 6.150641 CAGGCCCAAGTAATATCATCTGATTG 59.849 42.308 0.00 0.00 36.05 2.67
2169 2317 6.044754 TCAGGCCCAAGTAATATCATCTGATT 59.955 38.462 0.00 0.00 36.05 2.57
2170 2318 5.549228 TCAGGCCCAAGTAATATCATCTGAT 59.451 40.000 0.00 0.00 38.51 2.90
2171 2319 4.907269 TCAGGCCCAAGTAATATCATCTGA 59.093 41.667 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.