Multiple sequence alignment - TraesCS5A01G312000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G312000 chr5A 100.000 2086 0 0 1 2086 523617451 523615366 0.000000e+00 3853
1 TraesCS5A01G312000 chr5A 100.000 294 0 0 2436 2729 523615016 523614723 6.650000e-151 544
2 TraesCS5A01G312000 chr5A 82.562 281 44 4 1111 1390 523587996 523587720 2.710000e-60 243
3 TraesCS5A01G312000 chr5A 82.890 263 45 0 1128 1390 523567065 523566803 1.260000e-58 237
4 TraesCS5A01G312000 chr5A 82.692 260 43 2 1132 1390 523609453 523609195 2.110000e-56 230
5 TraesCS5A01G312000 chr5D 87.625 1398 78 32 598 1928 411846445 411845076 0.000000e+00 1535
6 TraesCS5A01G312000 chr5D 84.564 447 30 18 1 447 411846844 411846437 9.100000e-110 407
7 TraesCS5A01G312000 chr5D 85.130 269 39 1 1122 1390 410444212 410444479 9.630000e-70 274
8 TraesCS5A01G312000 chr5D 83.712 264 40 3 1128 1390 411743061 411742800 2.100000e-61 246
9 TraesCS5A01G312000 chr5B 87.060 1391 86 40 598 1926 494316472 494315114 0.000000e+00 1485
10 TraesCS5A01G312000 chr5B 83.885 453 52 12 1 447 494316901 494316464 1.960000e-111 412
11 TraesCS5A01G312000 chr5B 85.874 269 38 0 1122 1390 492619507 492619775 1.240000e-73 287
12 TraesCS5A01G312000 chr5B 100.000 148 0 0 446 593 680361166 680361313 9.630000e-70 274
13 TraesCS5A01G312000 chr5B 94.444 144 8 0 454 597 493519048 493518905 3.540000e-54 222
14 TraesCS5A01G312000 chr5B 82.937 252 32 9 1125 1372 493169006 493168762 1.650000e-52 217
15 TraesCS5A01G312000 chr5B 82.969 229 17 6 2518 2729 494313599 494313376 1.290000e-43 187
16 TraesCS5A01G312000 chr4A 100.000 151 0 0 447 597 229490623 229490473 2.070000e-71 279
17 TraesCS5A01G312000 chr4A 95.652 138 6 0 454 591 490918571 490918708 3.540000e-54 222
18 TraesCS5A01G312000 chr4A 95.035 141 7 0 454 594 599465765 599465905 3.540000e-54 222
19 TraesCS5A01G312000 chr3D 100.000 150 0 0 448 597 175658172 175658321 7.440000e-71 278
20 TraesCS5A01G312000 chr3D 94.483 145 8 0 454 598 275613549 275613693 9.830000e-55 224
21 TraesCS5A01G312000 chr6B 95.973 149 6 0 454 602 493062726 493062578 2.710000e-60 243
22 TraesCS5A01G312000 chr7A 95.139 144 7 0 454 597 516497757 516497900 7.600000e-56 228


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G312000 chr5A 523614723 523617451 2728 True 2198.500000 3853 100.0000 1 2729 2 chr5A.!!$R4 2728
1 TraesCS5A01G312000 chr5D 411845076 411846844 1768 True 971.000000 1535 86.0945 1 1928 2 chr5D.!!$R2 1927
2 TraesCS5A01G312000 chr5B 494313376 494316901 3525 True 694.666667 1485 84.6380 1 2729 3 chr5B.!!$R3 2728

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
159 162 0.031585 TTGAAGTCGGTCACCACGAG 59.968 55.0 0.0 0.0 41.5 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1936 2049 0.033504 AGACGCGTGGAGATGTGTTT 59.966 50.0 20.7 0.0 31.74 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 1.065551 ACTGCAGGCGAAGTGAAAAAC 59.934 47.619 19.93 0.00 0.00 2.43
52 53 0.383949 TGCAGGCGAAGTGAAAAACC 59.616 50.000 0.00 0.00 0.00 3.27
61 62 4.496175 GCGAAGTGAAAAACCCGTCTAAAA 60.496 41.667 0.00 0.00 0.00 1.52
62 63 4.965762 CGAAGTGAAAAACCCGTCTAAAAC 59.034 41.667 0.00 0.00 0.00 2.43
63 64 4.906065 AGTGAAAAACCCGTCTAAAACC 57.094 40.909 0.00 0.00 0.00 3.27
64 65 3.633525 AGTGAAAAACCCGTCTAAAACCC 59.366 43.478 0.00 0.00 0.00 4.11
65 66 2.617774 TGAAAAACCCGTCTAAAACCCG 59.382 45.455 0.00 0.00 0.00 5.28
66 67 2.636647 AAAACCCGTCTAAAACCCGA 57.363 45.000 0.00 0.00 0.00 5.14
67 68 2.174363 AAACCCGTCTAAAACCCGAG 57.826 50.000 0.00 0.00 0.00 4.63
68 69 1.051008 AACCCGTCTAAAACCCGAGT 58.949 50.000 0.00 0.00 0.00 4.18
69 70 1.923356 ACCCGTCTAAAACCCGAGTA 58.077 50.000 0.00 0.00 0.00 2.59
70 71 1.546029 ACCCGTCTAAAACCCGAGTAC 59.454 52.381 0.00 0.00 0.00 2.73
71 72 1.821136 CCCGTCTAAAACCCGAGTACT 59.179 52.381 0.00 0.00 0.00 2.73
76 77 4.406943 GTCTAAAACCCGAGTACTGTACG 58.593 47.826 11.97 0.00 0.00 3.67
84 85 3.671928 CCCGAGTACTGTACGAAACAAAG 59.328 47.826 11.97 0.30 37.74 2.77
85 86 3.671928 CCGAGTACTGTACGAAACAAAGG 59.328 47.826 11.97 4.97 37.74 3.11
87 88 4.615961 CGAGTACTGTACGAAACAAAGGAG 59.384 45.833 11.97 0.00 37.74 3.69
88 89 5.561532 CGAGTACTGTACGAAACAAAGGAGA 60.562 44.000 11.97 0.00 37.74 3.71
109 112 1.347707 TGGTGACACTGATTCCAGGTC 59.652 52.381 5.39 0.00 44.60 3.85
157 160 1.194547 CAATTGAAGTCGGTCACCACG 59.805 52.381 0.00 0.00 0.00 4.94
159 162 0.031585 TTGAAGTCGGTCACCACGAG 59.968 55.000 0.00 0.00 41.50 4.18
165 168 4.394712 GGTCACCACGAGCCCCAG 62.395 72.222 0.00 0.00 36.04 4.45
222 225 2.408050 CACTCTTGGTCTCCAACGAAG 58.592 52.381 0.00 0.00 43.07 3.79
244 247 4.866486 AGGAATGCGAATTCTGATTTTTGC 59.134 37.500 15.79 6.27 0.00 3.68
247 250 4.771590 TGCGAATTCTGATTTTTGCTCT 57.228 36.364 3.52 0.00 0.00 4.09
249 252 3.302699 GCGAATTCTGATTTTTGCTCTGC 59.697 43.478 3.52 0.00 0.00 4.26
250 253 4.478699 CGAATTCTGATTTTTGCTCTGCA 58.521 39.130 3.52 0.00 36.47 4.41
251 254 4.557690 CGAATTCTGATTTTTGCTCTGCAG 59.442 41.667 7.63 7.63 40.61 4.41
298 301 3.499048 TGATCAGCTTCGACGTTAAGAC 58.501 45.455 13.90 6.78 0.00 3.01
299 302 2.342910 TCAGCTTCGACGTTAAGACC 57.657 50.000 13.90 0.16 0.00 3.85
343 346 4.210331 CATCTAGACCCCATCCAAAAAGG 58.790 47.826 0.00 0.00 39.47 3.11
357 360 5.856156 TCCAAAAAGGAATCGTACTACACA 58.144 37.500 0.00 0.00 45.65 3.72
358 361 5.929992 TCCAAAAAGGAATCGTACTACACAG 59.070 40.000 0.00 0.00 45.65 3.66
359 362 5.121768 CCAAAAAGGAATCGTACTACACAGG 59.878 44.000 0.00 0.00 41.22 4.00
360 363 3.521947 AAGGAATCGTACTACACAGGC 57.478 47.619 0.00 0.00 0.00 4.85
361 364 2.453521 AGGAATCGTACTACACAGGCA 58.546 47.619 0.00 0.00 0.00 4.75
362 365 2.165845 AGGAATCGTACTACACAGGCAC 59.834 50.000 0.00 0.00 0.00 5.01
363 366 2.537401 GAATCGTACTACACAGGCACC 58.463 52.381 0.00 0.00 0.00 5.01
364 367 1.552578 ATCGTACTACACAGGCACCA 58.447 50.000 0.00 0.00 0.00 4.17
368 393 2.735444 CGTACTACACAGGCACCAGATG 60.735 54.545 0.00 0.00 0.00 2.90
393 418 2.619646 TCAGCTAAACCAAAACCCGAAC 59.380 45.455 0.00 0.00 0.00 3.95
395 420 2.882761 AGCTAAACCAAAACCCGAACTC 59.117 45.455 0.00 0.00 0.00 3.01
428 455 5.230182 GGCTCCAAAGAAACCATTAACAAG 58.770 41.667 0.00 0.00 0.00 3.16
438 468 2.224670 ACCATTAACAAGGACGAGGCAA 60.225 45.455 0.00 0.00 0.00 4.52
439 469 2.817258 CCATTAACAAGGACGAGGCAAA 59.183 45.455 0.00 0.00 0.00 3.68
440 470 3.119849 CCATTAACAAGGACGAGGCAAAG 60.120 47.826 0.00 0.00 0.00 2.77
441 471 2.922740 TAACAAGGACGAGGCAAAGT 57.077 45.000 0.00 0.00 0.00 2.66
442 472 2.922740 AACAAGGACGAGGCAAAGTA 57.077 45.000 0.00 0.00 0.00 2.24
443 473 2.922740 ACAAGGACGAGGCAAAGTAA 57.077 45.000 0.00 0.00 0.00 2.24
444 474 3.202829 ACAAGGACGAGGCAAAGTAAA 57.797 42.857 0.00 0.00 0.00 2.01
445 475 3.547746 ACAAGGACGAGGCAAAGTAAAA 58.452 40.909 0.00 0.00 0.00 1.52
446 476 3.314357 ACAAGGACGAGGCAAAGTAAAAC 59.686 43.478 0.00 0.00 0.00 2.43
447 477 2.501261 AGGACGAGGCAAAGTAAAACC 58.499 47.619 0.00 0.00 0.00 3.27
448 478 2.158726 AGGACGAGGCAAAGTAAAACCA 60.159 45.455 0.00 0.00 0.00 3.67
449 479 2.225727 GGACGAGGCAAAGTAAAACCAG 59.774 50.000 0.00 0.00 0.00 4.00
450 480 2.876550 GACGAGGCAAAGTAAAACCAGT 59.123 45.455 0.00 0.00 0.00 4.00
451 481 4.060205 GACGAGGCAAAGTAAAACCAGTA 58.940 43.478 0.00 0.00 0.00 2.74
452 482 4.062991 ACGAGGCAAAGTAAAACCAGTAG 58.937 43.478 0.00 0.00 0.00 2.57
453 483 4.062991 CGAGGCAAAGTAAAACCAGTAGT 58.937 43.478 0.00 0.00 0.00 2.73
454 484 4.084013 CGAGGCAAAGTAAAACCAGTAGTG 60.084 45.833 0.00 0.00 0.00 2.74
455 485 3.568430 AGGCAAAGTAAAACCAGTAGTGC 59.432 43.478 0.00 0.00 0.00 4.40
456 486 3.568430 GGCAAAGTAAAACCAGTAGTGCT 59.432 43.478 0.00 0.00 0.00 4.40
457 487 4.758165 GGCAAAGTAAAACCAGTAGTGCTA 59.242 41.667 0.00 0.00 0.00 3.49
458 488 5.414765 GGCAAAGTAAAACCAGTAGTGCTAT 59.585 40.000 0.00 0.00 0.00 2.97
459 489 6.596497 GGCAAAGTAAAACCAGTAGTGCTATA 59.404 38.462 0.00 0.00 0.00 1.31
460 490 7.413767 GGCAAAGTAAAACCAGTAGTGCTATAC 60.414 40.741 0.00 0.00 0.00 1.47
461 491 7.118680 GCAAAGTAAAACCAGTAGTGCTATACA 59.881 37.037 0.00 0.00 0.00 2.29
475 505 4.180817 TGCTATACACACGACAAGATTGG 58.819 43.478 0.00 0.00 0.00 3.16
476 506 4.081917 TGCTATACACACGACAAGATTGGA 60.082 41.667 0.00 0.00 0.00 3.53
477 507 4.267928 GCTATACACACGACAAGATTGGAC 59.732 45.833 0.00 0.00 0.00 4.02
478 508 1.497991 ACACACGACAAGATTGGACG 58.502 50.000 10.96 10.96 37.79 4.79
479 509 1.067974 ACACACGACAAGATTGGACGA 59.932 47.619 16.67 0.00 36.50 4.20
480 510 2.288825 ACACACGACAAGATTGGACGAT 60.289 45.455 16.67 6.06 36.50 3.73
481 511 2.345641 CACACGACAAGATTGGACGATC 59.654 50.000 16.67 0.00 36.50 3.69
482 512 2.231478 ACACGACAAGATTGGACGATCT 59.769 45.455 16.67 0.00 37.99 2.75
483 513 3.254060 CACGACAAGATTGGACGATCTT 58.746 45.455 16.67 8.64 44.94 2.40
484 514 3.679980 CACGACAAGATTGGACGATCTTT 59.320 43.478 11.24 4.93 42.24 2.52
485 515 3.679980 ACGACAAGATTGGACGATCTTTG 59.320 43.478 11.24 9.77 42.24 2.77
486 516 3.062639 CGACAAGATTGGACGATCTTTGG 59.937 47.826 11.24 5.41 42.24 3.28
487 517 4.253685 GACAAGATTGGACGATCTTTGGA 58.746 43.478 11.24 0.00 42.24 3.53
488 518 4.003648 ACAAGATTGGACGATCTTTGGAC 58.996 43.478 11.24 0.00 42.24 4.02
489 519 2.893637 AGATTGGACGATCTTTGGACG 58.106 47.619 0.00 0.00 32.54 4.79
490 520 2.496070 AGATTGGACGATCTTTGGACGA 59.504 45.455 0.00 0.00 32.54 4.20
491 521 3.133003 AGATTGGACGATCTTTGGACGAT 59.867 43.478 0.00 0.00 32.54 3.73
492 522 2.293677 TGGACGATCTTTGGACGATG 57.706 50.000 0.00 0.00 0.00 3.84
493 523 0.931005 GGACGATCTTTGGACGATGC 59.069 55.000 0.00 0.00 0.00 3.91
494 524 1.640428 GACGATCTTTGGACGATGCA 58.360 50.000 0.00 0.00 0.00 3.96
495 525 1.590238 GACGATCTTTGGACGATGCAG 59.410 52.381 0.00 0.00 0.00 4.41
496 526 0.302890 CGATCTTTGGACGATGCAGC 59.697 55.000 0.00 0.00 0.00 5.25
497 527 1.372582 GATCTTTGGACGATGCAGCA 58.627 50.000 1.53 0.00 0.00 4.41
498 528 1.063174 GATCTTTGGACGATGCAGCAC 59.937 52.381 1.53 0.00 0.00 4.40
499 529 0.250252 TCTTTGGACGATGCAGCACA 60.250 50.000 1.53 0.00 0.00 4.57
500 530 0.806868 CTTTGGACGATGCAGCACAT 59.193 50.000 1.53 0.00 43.54 3.21
507 537 2.512286 ATGCAGCACATCCGACCG 60.512 61.111 0.00 0.00 31.52 4.79
508 538 3.315142 ATGCAGCACATCCGACCGT 62.315 57.895 0.00 0.00 31.52 4.83
509 539 1.955495 ATGCAGCACATCCGACCGTA 61.955 55.000 0.00 0.00 31.52 4.02
510 540 2.165301 GCAGCACATCCGACCGTAC 61.165 63.158 0.00 0.00 0.00 3.67
511 541 1.872234 CAGCACATCCGACCGTACG 60.872 63.158 8.69 8.69 0.00 3.67
512 542 2.180017 GCACATCCGACCGTACGT 59.820 61.111 15.21 2.02 0.00 3.57
513 543 1.026182 AGCACATCCGACCGTACGTA 61.026 55.000 15.21 0.00 0.00 3.57
514 544 0.863119 GCACATCCGACCGTACGTAC 60.863 60.000 15.90 15.90 0.00 3.67
523 553 4.445573 CGTACGTACGCAGAGCAA 57.554 55.556 32.36 0.00 43.14 3.91
524 554 2.715758 CGTACGTACGCAGAGCAAA 58.284 52.632 32.36 0.00 43.14 3.68
525 555 1.054574 CGTACGTACGCAGAGCAAAA 58.945 50.000 32.36 0.00 43.14 2.44
526 556 1.452773 CGTACGTACGCAGAGCAAAAA 59.547 47.619 32.36 0.00 43.14 1.94
527 557 2.716704 CGTACGTACGCAGAGCAAAAAC 60.717 50.000 32.36 0.00 43.14 2.43
528 558 1.578583 ACGTACGCAGAGCAAAAACT 58.421 45.000 16.72 0.00 0.00 2.66
529 559 1.260561 ACGTACGCAGAGCAAAAACTG 59.739 47.619 16.72 0.00 37.22 3.16
530 560 1.398451 CGTACGCAGAGCAAAAACTGG 60.398 52.381 0.52 0.00 35.05 4.00
531 561 1.871039 GTACGCAGAGCAAAAACTGGA 59.129 47.619 0.00 0.00 35.05 3.86
532 562 1.609208 ACGCAGAGCAAAAACTGGAT 58.391 45.000 0.00 0.00 35.05 3.41
533 563 1.267806 ACGCAGAGCAAAAACTGGATG 59.732 47.619 0.00 0.00 35.05 3.51
534 564 1.706443 GCAGAGCAAAAACTGGATGC 58.294 50.000 0.00 0.00 40.34 3.91
535 565 1.000060 GCAGAGCAAAAACTGGATGCA 60.000 47.619 0.00 0.00 42.45 3.96
536 566 2.669364 CAGAGCAAAAACTGGATGCAC 58.331 47.619 0.00 0.00 42.45 4.57
537 567 1.615392 AGAGCAAAAACTGGATGCACC 59.385 47.619 0.00 0.00 42.45 5.01
538 568 0.314935 AGCAAAAACTGGATGCACCG 59.685 50.000 0.00 0.00 42.45 4.94
539 569 0.031994 GCAAAAACTGGATGCACCGT 59.968 50.000 0.00 0.00 42.61 4.83
540 570 1.930371 GCAAAAACTGGATGCACCGTC 60.930 52.381 0.00 0.00 42.61 4.79
541 571 1.336440 CAAAAACTGGATGCACCGTCA 59.664 47.619 0.00 0.00 42.61 4.35
542 572 1.686355 AAAACTGGATGCACCGTCAA 58.314 45.000 0.00 0.00 42.61 3.18
543 573 1.909700 AAACTGGATGCACCGTCAAT 58.090 45.000 0.00 0.00 42.61 2.57
544 574 1.453155 AACTGGATGCACCGTCAATC 58.547 50.000 0.00 0.00 42.61 2.67
545 575 0.324614 ACTGGATGCACCGTCAATCA 59.675 50.000 0.00 0.00 42.61 2.57
546 576 1.065199 ACTGGATGCACCGTCAATCAT 60.065 47.619 0.00 0.00 42.61 2.45
547 577 1.600957 CTGGATGCACCGTCAATCATC 59.399 52.381 0.00 0.00 42.61 2.92
548 578 0.947244 GGATGCACCGTCAATCATCC 59.053 55.000 4.59 4.59 45.39 3.51
549 579 0.583438 GATGCACCGTCAATCATCCG 59.417 55.000 0.00 0.00 31.62 4.18
550 580 0.107703 ATGCACCGTCAATCATCCGT 60.108 50.000 0.00 0.00 0.00 4.69
551 581 0.739462 TGCACCGTCAATCATCCGTC 60.739 55.000 0.00 0.00 0.00 4.79
552 582 1.752501 GCACCGTCAATCATCCGTCG 61.753 60.000 0.00 0.00 0.00 5.12
553 583 0.457853 CACCGTCAATCATCCGTCGT 60.458 55.000 0.00 0.00 0.00 4.34
554 584 0.179145 ACCGTCAATCATCCGTCGTC 60.179 55.000 0.00 0.00 0.00 4.20
555 585 0.870307 CCGTCAATCATCCGTCGTCC 60.870 60.000 0.00 0.00 0.00 4.79
556 586 0.100682 CGTCAATCATCCGTCGTCCT 59.899 55.000 0.00 0.00 0.00 3.85
557 587 1.469251 CGTCAATCATCCGTCGTCCTT 60.469 52.381 0.00 0.00 0.00 3.36
558 588 2.223409 CGTCAATCATCCGTCGTCCTTA 60.223 50.000 0.00 0.00 0.00 2.69
559 589 3.372954 GTCAATCATCCGTCGTCCTTAG 58.627 50.000 0.00 0.00 0.00 2.18
560 590 3.021695 TCAATCATCCGTCGTCCTTAGT 58.978 45.455 0.00 0.00 0.00 2.24
561 591 3.446161 TCAATCATCCGTCGTCCTTAGTT 59.554 43.478 0.00 0.00 0.00 2.24
562 592 3.712091 ATCATCCGTCGTCCTTAGTTC 57.288 47.619 0.00 0.00 0.00 3.01
563 593 1.399440 TCATCCGTCGTCCTTAGTTCG 59.601 52.381 0.00 0.00 0.00 3.95
564 594 1.131883 CATCCGTCGTCCTTAGTTCGT 59.868 52.381 0.00 0.00 0.00 3.85
565 595 0.518636 TCCGTCGTCCTTAGTTCGTG 59.481 55.000 0.00 0.00 0.00 4.35
566 596 1.069378 CCGTCGTCCTTAGTTCGTGC 61.069 60.000 0.00 0.00 0.00 5.34
567 597 1.393597 CGTCGTCCTTAGTTCGTGCG 61.394 60.000 0.00 0.00 0.00 5.34
568 598 1.069378 GTCGTCCTTAGTTCGTGCGG 61.069 60.000 0.00 0.00 0.00 5.69
569 599 1.804326 CGTCCTTAGTTCGTGCGGG 60.804 63.158 0.00 0.00 0.00 6.13
570 600 2.098831 GTCCTTAGTTCGTGCGGGC 61.099 63.158 0.00 0.00 0.00 6.13
571 601 2.047655 CCTTAGTTCGTGCGGGCA 60.048 61.111 0.00 0.00 0.00 5.36
572 602 1.669760 CCTTAGTTCGTGCGGGCAA 60.670 57.895 0.00 0.00 0.00 4.52
573 603 1.231958 CCTTAGTTCGTGCGGGCAAA 61.232 55.000 0.00 0.00 0.00 3.68
574 604 0.110373 CTTAGTTCGTGCGGGCAAAC 60.110 55.000 0.00 0.00 0.00 2.93
575 605 0.533308 TTAGTTCGTGCGGGCAAACT 60.533 50.000 13.43 13.43 33.32 2.66
576 606 1.225376 TAGTTCGTGCGGGCAAACTG 61.225 55.000 16.87 0.49 31.76 3.16
577 607 2.515057 TTCGTGCGGGCAAACTGT 60.515 55.556 0.00 0.00 0.00 3.55
578 608 2.539338 TTCGTGCGGGCAAACTGTC 61.539 57.895 0.00 0.00 0.00 3.51
579 609 4.368808 CGTGCGGGCAAACTGTCG 62.369 66.667 0.00 0.00 0.00 4.35
580 610 3.276846 GTGCGGGCAAACTGTCGT 61.277 61.111 0.00 0.00 0.00 4.34
581 611 2.970324 TGCGGGCAAACTGTCGTC 60.970 61.111 0.00 0.00 0.00 4.20
582 612 3.723348 GCGGGCAAACTGTCGTCC 61.723 66.667 0.00 0.00 0.00 4.79
583 613 3.411351 CGGGCAAACTGTCGTCCG 61.411 66.667 8.53 8.53 0.00 4.79
584 614 3.723348 GGGCAAACTGTCGTCCGC 61.723 66.667 0.00 0.00 0.00 5.54
585 615 2.970324 GGCAAACTGTCGTCCGCA 60.970 61.111 0.00 0.00 0.00 5.69
586 616 2.248431 GCAAACTGTCGTCCGCAC 59.752 61.111 0.00 0.00 0.00 5.34
587 617 2.530497 GCAAACTGTCGTCCGCACA 61.530 57.895 0.00 0.00 0.00 4.57
588 618 1.564622 CAAACTGTCGTCCGCACAG 59.435 57.895 13.76 13.76 45.86 3.66
591 621 4.459973 CTGTCGTCCGCACAGTAG 57.540 61.111 9.57 0.00 37.15 2.57
592 622 1.579932 CTGTCGTCCGCACAGTAGT 59.420 57.895 9.57 0.00 37.15 2.73
593 623 0.039437 CTGTCGTCCGCACAGTAGTT 60.039 55.000 9.57 0.00 37.15 2.24
594 624 0.386476 TGTCGTCCGCACAGTAGTTT 59.614 50.000 0.00 0.00 0.00 2.66
595 625 1.058404 GTCGTCCGCACAGTAGTTTC 58.942 55.000 0.00 0.00 0.00 2.78
596 626 0.386352 TCGTCCGCACAGTAGTTTCG 60.386 55.000 0.00 0.00 0.00 3.46
613 643 0.879400 TCGAAGTAAAACGGCCGCAA 60.879 50.000 28.58 4.91 0.00 4.85
617 647 1.154543 GTAAAACGGCCGCAAGACG 60.155 57.895 28.58 0.00 41.94 4.18
646 676 2.357881 CGCAAGTGAGCAGGAGCA 60.358 61.111 0.00 0.00 45.49 4.26
726 784 0.528470 GGGGTCACTCTCGAAGTCTG 59.472 60.000 0.00 0.00 35.45 3.51
730 788 2.095466 GGTCACTCTCGAAGTCTGTCAG 60.095 54.545 0.00 0.00 35.45 3.51
801 860 0.179100 CGTATCCAGCCTGTGTCCTG 60.179 60.000 0.00 0.00 0.00 3.86
802 861 0.462759 GTATCCAGCCTGTGTCCTGC 60.463 60.000 0.00 0.00 0.00 4.85
809 875 2.575993 CTGTGTCCTGCCCTCTCG 59.424 66.667 0.00 0.00 0.00 4.04
836 914 1.836604 GCTTTGCCCCCTGGTTTCA 60.837 57.895 0.00 0.00 0.00 2.69
867 945 0.319297 CCGCCACCTATAAGTACGCC 60.319 60.000 0.00 0.00 0.00 5.68
876 954 1.793134 ATAAGTACGCCGCTCCCGAG 61.793 60.000 0.00 0.00 36.29 4.63
906 984 3.373130 TGCTCAAATTTCTCATCGCAGAG 59.627 43.478 0.00 0.00 43.63 3.35
936 1017 0.179234 TCACACTCGAGCAACCCAAA 59.821 50.000 13.61 0.00 0.00 3.28
937 1018 1.021202 CACACTCGAGCAACCCAAAA 58.979 50.000 13.61 0.00 0.00 2.44
938 1019 1.002468 CACACTCGAGCAACCCAAAAG 60.002 52.381 13.61 0.00 0.00 2.27
939 1020 0.040067 CACTCGAGCAACCCAAAAGC 60.040 55.000 13.61 0.00 0.00 3.51
940 1021 0.465460 ACTCGAGCAACCCAAAAGCA 60.465 50.000 13.61 0.00 0.00 3.91
941 1022 0.883833 CTCGAGCAACCCAAAAGCAT 59.116 50.000 0.00 0.00 0.00 3.79
942 1023 0.881118 TCGAGCAACCCAAAAGCATC 59.119 50.000 0.00 0.00 0.00 3.91
943 1024 0.109132 CGAGCAACCCAAAAGCATCC 60.109 55.000 0.00 0.00 0.00 3.51
944 1025 1.260544 GAGCAACCCAAAAGCATCCT 58.739 50.000 0.00 0.00 0.00 3.24
945 1026 1.203287 GAGCAACCCAAAAGCATCCTC 59.797 52.381 0.00 0.00 0.00 3.71
950 1031 1.259609 CCCAAAAGCATCCTCAGCAA 58.740 50.000 0.00 0.00 0.00 3.91
952 1033 1.614903 CCAAAAGCATCCTCAGCAACA 59.385 47.619 0.00 0.00 0.00 3.33
955 1036 2.574006 AAGCATCCTCAGCAACAAGA 57.426 45.000 0.00 0.00 0.00 3.02
962 1043 1.072965 CCTCAGCAACAAGAACCTCCT 59.927 52.381 0.00 0.00 0.00 3.69
983 1064 1.302832 CCGGCCAAGAAACAGAGCT 60.303 57.895 2.24 0.00 0.00 4.09
988 1069 1.884235 CCAAGAAACAGAGCTTCCGT 58.116 50.000 0.00 0.00 0.00 4.69
989 1070 2.222027 CCAAGAAACAGAGCTTCCGTT 58.778 47.619 0.00 0.00 0.00 4.44
991 1072 1.884235 AGAAACAGAGCTTCCGTTGG 58.116 50.000 0.00 0.00 0.00 3.77
993 1074 1.531578 GAAACAGAGCTTCCGTTGGAC 59.468 52.381 0.00 0.00 0.00 4.02
995 1076 0.034059 ACAGAGCTTCCGTTGGACAG 59.966 55.000 0.00 0.00 0.00 3.51
1035 1134 2.725008 GAGATGAGCGGGGAGTCG 59.275 66.667 0.00 0.00 0.00 4.18
1070 1169 1.743252 GCAGCGGGGAGAACTTCTG 60.743 63.158 0.00 0.00 0.00 3.02
1080 1179 1.807573 GAACTTCTGCTCGCCCTCG 60.808 63.158 0.00 0.00 0.00 4.63
1081 1180 3.302347 AACTTCTGCTCGCCCTCGG 62.302 63.158 0.00 0.00 36.13 4.63
1325 1424 2.583319 CGACGCCGTCATGCTCAT 60.583 61.111 18.40 0.00 32.09 2.90
1330 1429 2.879070 GCCGTCATGCTCATGCTCG 61.879 63.158 5.04 11.10 38.65 5.03
1413 1512 2.759973 TCCTCCTACCGCAGCCTG 60.760 66.667 0.00 0.00 0.00 4.85
1596 1695 2.505777 CAGGACGTGCTGAGCGAG 60.506 66.667 30.88 3.05 0.00 5.03
1688 1790 4.963428 CGGCGATTACGGGGAGGC 62.963 72.222 0.00 0.00 40.15 4.70
1689 1791 3.547513 GGCGATTACGGGGAGGCT 61.548 66.667 0.00 0.00 40.15 4.58
1690 1792 2.029221 GCGATTACGGGGAGGCTC 59.971 66.667 5.78 5.78 40.15 4.70
1691 1793 2.792947 GCGATTACGGGGAGGCTCA 61.793 63.158 17.69 0.00 40.15 4.26
1692 1794 1.067582 CGATTACGGGGAGGCTCAC 59.932 63.158 17.69 13.55 35.72 3.51
1693 1795 1.446366 GATTACGGGGAGGCTCACC 59.554 63.158 26.43 26.43 36.31 4.02
1752 1854 1.467556 CTAGTTCGCGCTGCTTCGAG 61.468 60.000 5.56 0.00 36.02 4.04
1758 1862 0.246912 CGCGCTGCTTCGAGTTTTAG 60.247 55.000 5.56 0.00 0.00 1.85
1764 1868 3.668226 GCTGCTTCGAGTTTTAGCTTTCC 60.668 47.826 7.50 0.00 35.93 3.13
1832 1937 1.005037 TGTAGGGTCACTGCTTGCG 60.005 57.895 0.00 0.00 32.41 4.85
1901 2014 5.560966 TTTGACTCTTGACTTTCCACAAC 57.439 39.130 0.00 0.00 0.00 3.32
1928 2041 2.768833 TTCGCGCTGTATAGAACGAT 57.231 45.000 5.56 0.00 34.31 3.73
1929 2042 3.883631 TTCGCGCTGTATAGAACGATA 57.116 42.857 5.56 0.00 34.31 2.92
1930 2043 4.414999 TTCGCGCTGTATAGAACGATAT 57.585 40.909 5.56 0.00 34.31 1.63
1931 2044 3.743886 TCGCGCTGTATAGAACGATATG 58.256 45.455 5.56 0.00 30.90 1.78
1932 2045 3.434299 TCGCGCTGTATAGAACGATATGA 59.566 43.478 5.56 0.00 30.90 2.15
1933 2046 4.094442 TCGCGCTGTATAGAACGATATGAT 59.906 41.667 5.56 0.00 30.90 2.45
1934 2047 4.203160 CGCGCTGTATAGAACGATATGATG 59.797 45.833 5.56 0.00 0.00 3.07
1936 2049 5.676331 GCGCTGTATAGAACGATATGATGGA 60.676 44.000 0.00 0.00 0.00 3.41
1938 2051 6.806739 CGCTGTATAGAACGATATGATGGAAA 59.193 38.462 0.00 0.00 0.00 3.13
1951 2064 2.927004 TGGAAACACATCTCCACGC 58.073 52.632 0.00 0.00 36.79 5.34
1953 2066 0.949105 GGAAACACATCTCCACGCGT 60.949 55.000 5.58 5.58 0.00 6.01
1955 2068 0.033504 AAACACATCTCCACGCGTCT 59.966 50.000 9.86 0.00 0.00 4.18
1958 2071 1.154016 ACATCTCCACGCGTCTTCG 60.154 57.895 9.86 0.00 40.37 3.79
1960 2073 2.044555 ATCTCCACGCGTCTTCGGA 61.045 57.895 9.86 12.83 37.56 4.55
1961 2074 2.267681 ATCTCCACGCGTCTTCGGAC 62.268 60.000 9.86 0.00 41.27 4.79
1969 2082 4.571250 GTCTTCGGACGATGCACA 57.429 55.556 0.00 0.00 35.10 4.57
1972 2085 1.135489 GTCTTCGGACGATGCACAGTA 60.135 52.381 0.00 0.00 35.10 2.74
1973 2086 1.749063 TCTTCGGACGATGCACAGTAT 59.251 47.619 0.00 0.00 0.00 2.12
1974 2087 1.854743 CTTCGGACGATGCACAGTATG 59.145 52.381 0.00 0.00 46.00 2.39
1992 2105 2.609825 GCTAGGTGCATCATCGTGG 58.390 57.895 0.00 0.00 42.31 4.94
1993 2106 1.502163 GCTAGGTGCATCATCGTGGC 61.502 60.000 0.00 0.00 42.31 5.01
1994 2107 1.217585 CTAGGTGCATCATCGTGGCG 61.218 60.000 0.00 0.00 0.00 5.69
1996 2109 3.576356 GTGCATCATCGTGGCGGG 61.576 66.667 0.00 0.00 0.00 6.13
1997 2110 4.854924 TGCATCATCGTGGCGGGG 62.855 66.667 0.00 0.00 0.00 5.73
1998 2111 4.545706 GCATCATCGTGGCGGGGA 62.546 66.667 0.00 0.00 0.00 4.81
1999 2112 2.427320 CATCATCGTGGCGGGGAT 59.573 61.111 0.00 0.00 0.00 3.85
2000 2113 1.671166 CATCATCGTGGCGGGGATA 59.329 57.895 0.00 0.00 0.00 2.59
2001 2114 0.034756 CATCATCGTGGCGGGGATAA 59.965 55.000 0.00 0.00 0.00 1.75
2002 2115 0.762418 ATCATCGTGGCGGGGATAAA 59.238 50.000 0.00 0.00 0.00 1.40
2003 2116 0.542333 TCATCGTGGCGGGGATAAAA 59.458 50.000 0.00 0.00 0.00 1.52
2006 2119 0.253610 TCGTGGCGGGGATAAAATGT 59.746 50.000 0.00 0.00 0.00 2.71
2007 2120 0.380378 CGTGGCGGGGATAAAATGTG 59.620 55.000 0.00 0.00 0.00 3.21
2008 2121 0.744281 GTGGCGGGGATAAAATGTGG 59.256 55.000 0.00 0.00 0.00 4.17
2013 2126 2.572290 CGGGGATAAAATGTGGGAGAC 58.428 52.381 0.00 0.00 0.00 3.36
2014 2127 2.572290 GGGGATAAAATGTGGGAGACG 58.428 52.381 0.00 0.00 0.00 4.18
2016 2129 3.617284 GGGATAAAATGTGGGAGACGTT 58.383 45.455 0.00 0.00 35.11 3.99
2017 2130 4.014406 GGGATAAAATGTGGGAGACGTTT 58.986 43.478 0.00 0.00 44.27 3.60
2040 2153 1.003116 TCTATTAAGAGACGTCGCCGC 60.003 52.381 16.07 4.28 37.70 6.53
2041 2154 1.002684 CTATTAAGAGACGTCGCCGCT 60.003 52.381 16.07 6.57 37.70 5.52
2042 2155 0.525668 ATTAAGAGACGTCGCCGCTG 60.526 55.000 16.07 0.00 37.70 5.18
2050 2163 2.817834 GTCGCCGCTGCCACATAA 60.818 61.111 0.00 0.00 0.00 1.90
2051 2164 2.817834 TCGCCGCTGCCACATAAC 60.818 61.111 0.00 0.00 0.00 1.89
2055 2168 2.045438 CGCTGCCACATAACCCCA 60.045 61.111 0.00 0.00 0.00 4.96
2056 2169 1.677300 CGCTGCCACATAACCCCAA 60.677 57.895 0.00 0.00 0.00 4.12
2057 2170 1.890174 GCTGCCACATAACCCCAAC 59.110 57.895 0.00 0.00 0.00 3.77
2059 2172 0.251564 CTGCCACATAACCCCAACCA 60.252 55.000 0.00 0.00 0.00 3.67
2060 2173 0.540830 TGCCACATAACCCCAACCAC 60.541 55.000 0.00 0.00 0.00 4.16
2061 2174 0.251608 GCCACATAACCCCAACCACT 60.252 55.000 0.00 0.00 0.00 4.00
2064 2177 3.086282 CCACATAACCCCAACCACTAAC 58.914 50.000 0.00 0.00 0.00 2.34
2065 2178 2.745281 CACATAACCCCAACCACTAACG 59.255 50.000 0.00 0.00 0.00 3.18
2069 2182 1.373435 CCCCAACCACTAACGCTGA 59.627 57.895 0.00 0.00 0.00 4.26
2070 2183 0.250553 CCCCAACCACTAACGCTGAA 60.251 55.000 0.00 0.00 0.00 3.02
2071 2184 1.613255 CCCCAACCACTAACGCTGAAT 60.613 52.381 0.00 0.00 0.00 2.57
2072 2185 1.737793 CCCAACCACTAACGCTGAATC 59.262 52.381 0.00 0.00 0.00 2.52
2073 2186 2.615493 CCCAACCACTAACGCTGAATCT 60.615 50.000 0.00 0.00 0.00 2.40
2074 2187 3.369052 CCCAACCACTAACGCTGAATCTA 60.369 47.826 0.00 0.00 0.00 1.98
2075 2188 4.250464 CCAACCACTAACGCTGAATCTAA 58.750 43.478 0.00 0.00 0.00 2.10
2076 2189 4.092968 CCAACCACTAACGCTGAATCTAAC 59.907 45.833 0.00 0.00 0.00 2.34
2077 2190 4.530710 ACCACTAACGCTGAATCTAACA 57.469 40.909 0.00 0.00 0.00 2.41
2078 2191 4.890088 ACCACTAACGCTGAATCTAACAA 58.110 39.130 0.00 0.00 0.00 2.83
2079 2192 5.302360 ACCACTAACGCTGAATCTAACAAA 58.698 37.500 0.00 0.00 0.00 2.83
2081 2194 6.261381 ACCACTAACGCTGAATCTAACAAAAA 59.739 34.615 0.00 0.00 0.00 1.94
2082 2195 7.040686 ACCACTAACGCTGAATCTAACAAAAAT 60.041 33.333 0.00 0.00 0.00 1.82
2084 2197 8.015087 CACTAACGCTGAATCTAACAAAAATGA 58.985 33.333 0.00 0.00 0.00 2.57
2085 2198 8.564574 ACTAACGCTGAATCTAACAAAAATGAA 58.435 29.630 0.00 0.00 0.00 2.57
2465 2578 4.445699 GGCTGCACCGATAGAAGG 57.554 61.111 0.50 0.00 39.76 3.46
2467 2580 0.249657 GGCTGCACCGATAGAAGGAG 60.250 60.000 0.50 0.00 39.76 3.69
2469 2582 1.137086 GCTGCACCGATAGAAGGAGAA 59.863 52.381 0.00 0.00 39.76 2.87
2470 2583 2.801342 GCTGCACCGATAGAAGGAGAAG 60.801 54.545 0.00 0.00 39.76 2.85
2472 2585 2.690497 TGCACCGATAGAAGGAGAAGAG 59.310 50.000 0.00 0.00 39.76 2.85
2474 2587 2.035321 CACCGATAGAAGGAGAAGAGGC 59.965 54.545 0.00 0.00 39.76 4.70
2485 3170 5.109500 AGGAGAAGAGGCTTTTCTTATGG 57.891 43.478 19.93 0.00 37.53 2.74
2486 3171 4.785376 AGGAGAAGAGGCTTTTCTTATGGA 59.215 41.667 19.93 0.00 37.53 3.41
2487 3172 5.104569 AGGAGAAGAGGCTTTTCTTATGGAG 60.105 44.000 19.93 0.00 37.53 3.86
2491 3176 3.457749 AGAGGCTTTTCTTATGGAGGGAG 59.542 47.826 0.00 0.00 0.00 4.30
2492 3177 2.511637 AGGCTTTTCTTATGGAGGGAGG 59.488 50.000 0.00 0.00 0.00 4.30
2493 3178 2.509964 GGCTTTTCTTATGGAGGGAGGA 59.490 50.000 0.00 0.00 0.00 3.71
2494 3179 3.434310 GGCTTTTCTTATGGAGGGAGGAG 60.434 52.174 0.00 0.00 0.00 3.69
2497 3182 3.795755 TTCTTATGGAGGGAGGAGGAA 57.204 47.619 0.00 0.00 0.00 3.36
2498 3183 3.795755 TCTTATGGAGGGAGGAGGAAA 57.204 47.619 0.00 0.00 0.00 3.13
2500 3185 5.434003 TCTTATGGAGGGAGGAGGAAATA 57.566 43.478 0.00 0.00 0.00 1.40
2501 3186 5.407049 TCTTATGGAGGGAGGAGGAAATAG 58.593 45.833 0.00 0.00 0.00 1.73
2502 3187 5.137949 TCTTATGGAGGGAGGAGGAAATAGA 59.862 44.000 0.00 0.00 0.00 1.98
2503 3188 4.516953 ATGGAGGGAGGAGGAAATAGAT 57.483 45.455 0.00 0.00 0.00 1.98
2505 3190 4.753186 TGGAGGGAGGAGGAAATAGATAC 58.247 47.826 0.00 0.00 0.00 2.24
2507 3192 3.166679 AGGGAGGAGGAAATAGATACGC 58.833 50.000 0.00 0.00 0.00 4.42
2508 3193 3.166679 GGGAGGAGGAAATAGATACGCT 58.833 50.000 0.00 0.00 0.00 5.07
2510 3195 4.322123 GGGAGGAGGAAATAGATACGCTTC 60.322 50.000 0.00 0.00 0.00 3.86
2511 3196 4.477780 GAGGAGGAAATAGATACGCTTCG 58.522 47.826 0.00 0.00 0.00 3.79
2512 3197 3.890147 AGGAGGAAATAGATACGCTTCGT 59.110 43.478 0.00 0.00 44.35 3.85
2514 3199 5.048507 GGAGGAAATAGATACGCTTCGTTT 58.951 41.667 0.00 0.00 41.54 3.60
2515 3200 5.522824 GGAGGAAATAGATACGCTTCGTTTT 59.477 40.000 0.00 0.00 41.54 2.43
2516 3201 6.292221 GGAGGAAATAGATACGCTTCGTTTTC 60.292 42.308 0.00 1.66 41.54 2.29
2517 3202 5.231568 AGGAAATAGATACGCTTCGTTTTCG 59.768 40.000 0.00 0.00 41.54 3.46
2548 3584 0.030235 GTCGTTCTGTTTTGGCCACC 59.970 55.000 3.88 0.00 0.00 4.61
2559 3595 2.047179 GGCCACCTCCGTTCTCAC 60.047 66.667 0.00 0.00 0.00 3.51
2573 3617 2.479566 TCTCACCAGCCTTCATGAAC 57.520 50.000 3.38 0.00 0.00 3.18
2591 3635 4.393834 TGAACCATGACTTCCATTTCGAA 58.606 39.130 0.00 0.00 31.94 3.71
2594 3638 3.753272 ACCATGACTTCCATTTCGAACTG 59.247 43.478 8.45 8.45 31.94 3.16
2596 3640 2.151202 TGACTTCCATTTCGAACTGGC 58.849 47.619 25.41 14.22 32.30 4.85
2597 3641 2.151202 GACTTCCATTTCGAACTGGCA 58.849 47.619 25.41 16.49 32.30 4.92
2601 3645 2.288666 TCCATTTCGAACTGGCATAGC 58.711 47.619 25.41 0.00 32.30 2.97
2603 3647 2.423185 CCATTTCGAACTGGCATAGCAA 59.577 45.455 20.09 0.00 0.00 3.91
2606 3650 3.829886 TTCGAACTGGCATAGCAAAAG 57.170 42.857 0.00 0.00 0.00 2.27
2611 3655 5.088739 CGAACTGGCATAGCAAAAGTAAAG 58.911 41.667 0.00 0.00 0.00 1.85
2614 3658 4.280677 ACTGGCATAGCAAAAGTAAAGCAA 59.719 37.500 0.00 0.00 0.00 3.91
2672 3725 2.283604 TGAGGGCGGTGCTGACTA 60.284 61.111 0.00 0.00 0.00 2.59
2701 3754 1.956477 ACCAAATCACTTGCTGACCAC 59.044 47.619 0.00 0.00 33.27 4.16
2702 3755 1.270550 CCAAATCACTTGCTGACCACC 59.729 52.381 0.00 0.00 33.27 4.61
2707 3760 3.057969 TCACTTGCTGACCACCATTAG 57.942 47.619 0.00 0.00 0.00 1.73
2709 3762 2.744202 CACTTGCTGACCACCATTAGTC 59.256 50.000 0.00 0.00 0.00 2.59
2710 3763 2.290323 ACTTGCTGACCACCATTAGTCC 60.290 50.000 0.00 0.00 31.76 3.85
2719 3772 2.105477 CCACCATTAGTCCTCTCCCATG 59.895 54.545 0.00 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.742053 TCACTTCGCCTGCAGTATTTTC 59.258 45.455 13.81 0.00 0.00 2.29
51 52 1.821136 AGTACTCGGGTTTTAGACGGG 59.179 52.381 0.00 0.00 0.00 5.28
52 53 2.229784 ACAGTACTCGGGTTTTAGACGG 59.770 50.000 0.00 0.00 0.00 4.79
61 62 2.229792 TGTTTCGTACAGTACTCGGGT 58.770 47.619 9.10 0.00 31.68 5.28
62 63 2.995466 TGTTTCGTACAGTACTCGGG 57.005 50.000 9.10 0.00 31.68 5.14
63 64 3.671928 CCTTTGTTTCGTACAGTACTCGG 59.328 47.826 9.10 0.00 38.19 4.63
64 65 4.539870 TCCTTTGTTTCGTACAGTACTCG 58.460 43.478 9.10 0.00 38.19 4.18
65 66 5.766222 TCTCCTTTGTTTCGTACAGTACTC 58.234 41.667 9.10 0.00 38.19 2.59
66 67 5.779529 TCTCCTTTGTTTCGTACAGTACT 57.220 39.130 9.10 0.00 38.19 2.73
67 68 5.347907 CCATCTCCTTTGTTTCGTACAGTAC 59.652 44.000 0.00 0.00 38.19 2.73
68 69 5.011329 ACCATCTCCTTTGTTTCGTACAGTA 59.989 40.000 0.00 0.00 38.19 2.74
69 70 4.202326 ACCATCTCCTTTGTTTCGTACAGT 60.202 41.667 0.00 0.00 38.19 3.55
70 71 4.152402 CACCATCTCCTTTGTTTCGTACAG 59.848 45.833 0.00 0.00 38.19 2.74
71 72 4.062293 CACCATCTCCTTTGTTTCGTACA 58.938 43.478 0.00 0.00 34.12 2.90
76 77 4.023707 CAGTGTCACCATCTCCTTTGTTTC 60.024 45.833 0.00 0.00 0.00 2.78
84 85 2.237143 TGGAATCAGTGTCACCATCTCC 59.763 50.000 0.00 2.39 0.00 3.71
85 86 3.529533 CTGGAATCAGTGTCACCATCTC 58.470 50.000 0.00 0.00 36.30 2.75
87 88 2.026822 ACCTGGAATCAGTGTCACCATC 60.027 50.000 0.00 0.00 39.31 3.51
88 89 1.988107 ACCTGGAATCAGTGTCACCAT 59.012 47.619 0.00 0.00 39.31 3.55
222 225 4.866486 AGCAAAAATCAGAATTCGCATTCC 59.134 37.500 4.07 0.00 39.95 3.01
273 276 5.637810 TCTTAACGTCGAAGCTGATCATTTT 59.362 36.000 0.00 0.00 0.00 1.82
298 301 4.680237 TGCTGCTTGACGTCCGGG 62.680 66.667 14.12 4.15 0.00 5.73
299 302 3.414700 GTGCTGCTTGACGTCCGG 61.415 66.667 14.12 6.80 0.00 5.14
343 346 2.094390 TGGTGCCTGTGTAGTACGATTC 60.094 50.000 0.00 0.00 0.00 2.52
344 347 1.897133 TGGTGCCTGTGTAGTACGATT 59.103 47.619 0.00 0.00 0.00 3.34
345 348 1.476891 CTGGTGCCTGTGTAGTACGAT 59.523 52.381 0.00 0.00 0.00 3.73
346 349 0.885879 CTGGTGCCTGTGTAGTACGA 59.114 55.000 0.00 0.00 0.00 3.43
347 350 0.885879 TCTGGTGCCTGTGTAGTACG 59.114 55.000 0.00 0.00 0.00 3.67
348 351 2.893637 CATCTGGTGCCTGTGTAGTAC 58.106 52.381 0.00 0.00 0.00 2.73
360 363 0.543277 TTAGCTGAGGGCATCTGGTG 59.457 55.000 18.73 0.24 44.79 4.17
361 364 1.065126 GTTTAGCTGAGGGCATCTGGT 60.065 52.381 14.71 14.71 44.79 4.00
362 365 1.673168 GTTTAGCTGAGGGCATCTGG 58.327 55.000 8.11 0.00 44.79 3.86
363 366 1.065199 TGGTTTAGCTGAGGGCATCTG 60.065 52.381 0.00 0.39 44.79 2.90
364 367 1.289160 TGGTTTAGCTGAGGGCATCT 58.711 50.000 0.00 0.00 44.79 2.90
368 393 1.272490 GGTTTTGGTTTAGCTGAGGGC 59.728 52.381 0.00 0.00 42.19 5.19
374 399 2.882761 GAGTTCGGGTTTTGGTTTAGCT 59.117 45.455 0.00 0.00 0.00 3.32
428 455 2.223745 TGGTTTTACTTTGCCTCGTCC 58.776 47.619 0.00 0.00 0.00 4.79
453 483 4.081917 TCCAATCTTGTCGTGTGTATAGCA 60.082 41.667 0.00 0.00 0.00 3.49
454 484 4.267928 GTCCAATCTTGTCGTGTGTATAGC 59.732 45.833 0.00 0.00 0.00 2.97
455 485 4.499399 CGTCCAATCTTGTCGTGTGTATAG 59.501 45.833 0.00 0.00 0.00 1.31
456 486 4.156373 TCGTCCAATCTTGTCGTGTGTATA 59.844 41.667 5.27 0.00 0.00 1.47
457 487 3.057104 TCGTCCAATCTTGTCGTGTGTAT 60.057 43.478 5.27 0.00 0.00 2.29
458 488 2.293955 TCGTCCAATCTTGTCGTGTGTA 59.706 45.455 5.27 0.00 0.00 2.90
459 489 1.067974 TCGTCCAATCTTGTCGTGTGT 59.932 47.619 5.27 0.00 0.00 3.72
460 490 1.778334 TCGTCCAATCTTGTCGTGTG 58.222 50.000 5.27 0.00 0.00 3.82
461 491 2.231478 AGATCGTCCAATCTTGTCGTGT 59.769 45.455 0.00 0.00 31.89 4.49
462 492 2.881074 AGATCGTCCAATCTTGTCGTG 58.119 47.619 0.00 0.00 31.89 4.35
463 493 3.594603 AAGATCGTCCAATCTTGTCGT 57.405 42.857 0.00 0.00 42.88 4.34
464 494 3.062639 CCAAAGATCGTCCAATCTTGTCG 59.937 47.826 0.22 0.00 43.53 4.35
465 495 4.093556 GTCCAAAGATCGTCCAATCTTGTC 59.906 45.833 0.22 0.00 43.53 3.18
466 496 4.003648 GTCCAAAGATCGTCCAATCTTGT 58.996 43.478 0.22 0.00 43.53 3.16
467 497 3.062639 CGTCCAAAGATCGTCCAATCTTG 59.937 47.826 0.22 0.00 43.53 3.02
468 498 3.056107 TCGTCCAAAGATCGTCCAATCTT 60.056 43.478 0.00 0.00 45.67 2.40
469 499 2.496070 TCGTCCAAAGATCGTCCAATCT 59.504 45.455 0.00 0.00 37.61 2.40
470 500 2.888594 TCGTCCAAAGATCGTCCAATC 58.111 47.619 0.00 0.00 0.00 2.67
471 501 3.198068 CATCGTCCAAAGATCGTCCAAT 58.802 45.455 0.00 0.00 0.00 3.16
472 502 2.616960 CATCGTCCAAAGATCGTCCAA 58.383 47.619 0.00 0.00 0.00 3.53
473 503 1.739035 GCATCGTCCAAAGATCGTCCA 60.739 52.381 0.00 0.00 0.00 4.02
474 504 0.931005 GCATCGTCCAAAGATCGTCC 59.069 55.000 0.00 0.00 0.00 4.79
475 505 1.590238 CTGCATCGTCCAAAGATCGTC 59.410 52.381 0.00 0.00 0.00 4.20
476 506 1.645034 CTGCATCGTCCAAAGATCGT 58.355 50.000 0.00 0.00 0.00 3.73
477 507 0.302890 GCTGCATCGTCCAAAGATCG 59.697 55.000 0.00 0.00 0.00 3.69
478 508 1.063174 GTGCTGCATCGTCCAAAGATC 59.937 52.381 5.27 0.00 0.00 2.75
479 509 1.089920 GTGCTGCATCGTCCAAAGAT 58.910 50.000 5.27 0.00 0.00 2.40
480 510 0.250252 TGTGCTGCATCGTCCAAAGA 60.250 50.000 5.27 0.00 0.00 2.52
481 511 0.806868 ATGTGCTGCATCGTCCAAAG 59.193 50.000 5.27 0.00 30.67 2.77
482 512 0.804364 GATGTGCTGCATCGTCCAAA 59.196 50.000 5.27 0.00 43.75 3.28
483 513 2.470156 GATGTGCTGCATCGTCCAA 58.530 52.632 5.27 0.00 43.75 3.53
484 514 4.206958 GATGTGCTGCATCGTCCA 57.793 55.556 5.27 0.00 43.75 4.02
490 520 1.955495 TACGGTCGGATGTGCTGCAT 61.955 55.000 5.27 0.00 41.24 3.96
491 521 2.641277 TACGGTCGGATGTGCTGCA 61.641 57.895 0.00 0.00 0.00 4.41
492 522 2.165301 GTACGGTCGGATGTGCTGC 61.165 63.158 0.00 0.00 0.00 5.25
493 523 1.872234 CGTACGGTCGGATGTGCTG 60.872 63.158 7.57 0.00 0.00 4.41
494 524 1.026182 TACGTACGGTCGGATGTGCT 61.026 55.000 21.06 0.00 34.94 4.40
495 525 0.863119 GTACGTACGGTCGGATGTGC 60.863 60.000 21.06 5.57 34.94 4.57
496 526 0.587242 CGTACGTACGGTCGGATGTG 60.587 60.000 34.54 7.76 45.30 3.21
497 527 1.715585 CGTACGTACGGTCGGATGT 59.284 57.895 34.54 5.73 45.30 3.06
498 528 4.576843 CGTACGTACGGTCGGATG 57.423 61.111 34.54 9.16 45.30 3.51
507 537 2.473984 AGTTTTTGCTCTGCGTACGTAC 59.526 45.455 17.90 15.90 0.00 3.67
508 538 2.473609 CAGTTTTTGCTCTGCGTACGTA 59.526 45.455 17.90 12.02 0.00 3.57
509 539 1.260561 CAGTTTTTGCTCTGCGTACGT 59.739 47.619 17.90 0.00 0.00 3.57
510 540 1.398451 CCAGTTTTTGCTCTGCGTACG 60.398 52.381 11.84 11.84 0.00 3.67
511 541 1.871039 TCCAGTTTTTGCTCTGCGTAC 59.129 47.619 0.00 0.00 0.00 3.67
512 542 2.248280 TCCAGTTTTTGCTCTGCGTA 57.752 45.000 0.00 0.00 0.00 4.42
513 543 1.267806 CATCCAGTTTTTGCTCTGCGT 59.732 47.619 0.00 0.00 0.00 5.24
514 544 1.973138 CATCCAGTTTTTGCTCTGCG 58.027 50.000 0.00 0.00 0.00 5.18
515 545 1.000060 TGCATCCAGTTTTTGCTCTGC 60.000 47.619 0.00 0.00 37.28 4.26
516 546 2.608752 GGTGCATCCAGTTTTTGCTCTG 60.609 50.000 0.00 0.00 37.28 3.35
517 547 1.615392 GGTGCATCCAGTTTTTGCTCT 59.385 47.619 0.00 0.00 37.28 4.09
518 548 1.666888 CGGTGCATCCAGTTTTTGCTC 60.667 52.381 0.00 0.00 37.28 4.26
519 549 0.314935 CGGTGCATCCAGTTTTTGCT 59.685 50.000 0.00 0.00 37.28 3.91
520 550 0.031994 ACGGTGCATCCAGTTTTTGC 59.968 50.000 0.00 0.00 36.91 3.68
521 551 1.336440 TGACGGTGCATCCAGTTTTTG 59.664 47.619 0.00 0.00 35.57 2.44
522 552 1.686355 TGACGGTGCATCCAGTTTTT 58.314 45.000 0.00 0.00 35.57 1.94
523 553 1.686355 TTGACGGTGCATCCAGTTTT 58.314 45.000 0.00 0.00 35.57 2.43
524 554 1.812571 GATTGACGGTGCATCCAGTTT 59.187 47.619 0.00 0.00 35.57 2.66
525 555 1.271325 TGATTGACGGTGCATCCAGTT 60.271 47.619 0.00 0.00 35.57 3.16
526 556 0.324614 TGATTGACGGTGCATCCAGT 59.675 50.000 0.00 0.00 35.57 4.00
527 557 1.600957 GATGATTGACGGTGCATCCAG 59.399 52.381 0.00 0.00 35.57 3.86
528 558 1.667236 GATGATTGACGGTGCATCCA 58.333 50.000 0.00 0.00 35.57 3.41
529 559 0.947244 GGATGATTGACGGTGCATCC 59.053 55.000 0.00 0.00 46.84 3.51
530 560 0.583438 CGGATGATTGACGGTGCATC 59.417 55.000 0.00 0.00 37.11 3.91
531 561 0.107703 ACGGATGATTGACGGTGCAT 60.108 50.000 0.00 0.00 0.00 3.96
532 562 0.739462 GACGGATGATTGACGGTGCA 60.739 55.000 0.00 0.00 0.00 4.57
533 563 1.752501 CGACGGATGATTGACGGTGC 61.753 60.000 0.00 0.00 0.00 5.01
534 564 0.457853 ACGACGGATGATTGACGGTG 60.458 55.000 0.00 0.00 0.00 4.94
535 565 0.179145 GACGACGGATGATTGACGGT 60.179 55.000 0.00 0.00 0.00 4.83
536 566 0.870307 GGACGACGGATGATTGACGG 60.870 60.000 0.00 0.00 0.00 4.79
537 567 0.100682 AGGACGACGGATGATTGACG 59.899 55.000 0.00 0.00 0.00 4.35
538 568 2.295253 AAGGACGACGGATGATTGAC 57.705 50.000 0.00 0.00 0.00 3.18
539 569 3.021695 ACTAAGGACGACGGATGATTGA 58.978 45.455 0.00 0.00 0.00 2.57
540 570 3.438297 ACTAAGGACGACGGATGATTG 57.562 47.619 0.00 0.00 0.00 2.67
541 571 3.488721 CGAACTAAGGACGACGGATGATT 60.489 47.826 0.00 0.00 0.00 2.57
542 572 2.033049 CGAACTAAGGACGACGGATGAT 59.967 50.000 0.00 0.00 0.00 2.45
543 573 1.399440 CGAACTAAGGACGACGGATGA 59.601 52.381 0.00 0.00 0.00 2.92
544 574 1.131883 ACGAACTAAGGACGACGGATG 59.868 52.381 0.00 0.00 0.00 3.51
545 575 1.131883 CACGAACTAAGGACGACGGAT 59.868 52.381 0.00 0.00 0.00 4.18
546 576 0.518636 CACGAACTAAGGACGACGGA 59.481 55.000 0.00 0.00 0.00 4.69
547 577 1.069378 GCACGAACTAAGGACGACGG 61.069 60.000 0.00 0.00 0.00 4.79
548 578 1.393597 CGCACGAACTAAGGACGACG 61.394 60.000 0.00 0.00 0.00 5.12
549 579 1.069378 CCGCACGAACTAAGGACGAC 61.069 60.000 0.00 0.00 0.00 4.34
550 580 1.210931 CCGCACGAACTAAGGACGA 59.789 57.895 0.00 0.00 0.00 4.20
551 581 1.804326 CCCGCACGAACTAAGGACG 60.804 63.158 0.00 0.00 0.00 4.79
552 582 2.098831 GCCCGCACGAACTAAGGAC 61.099 63.158 0.00 0.00 0.00 3.85
553 583 2.102109 TTGCCCGCACGAACTAAGGA 62.102 55.000 0.00 0.00 0.00 3.36
554 584 1.231958 TTTGCCCGCACGAACTAAGG 61.232 55.000 0.00 0.00 0.00 2.69
555 585 0.110373 GTTTGCCCGCACGAACTAAG 60.110 55.000 0.00 0.00 32.16 2.18
556 586 0.533308 AGTTTGCCCGCACGAACTAA 60.533 50.000 5.21 0.00 41.52 2.24
557 587 1.070105 AGTTTGCCCGCACGAACTA 59.930 52.632 5.21 0.00 41.52 2.24
558 588 2.203153 AGTTTGCCCGCACGAACT 60.203 55.556 1.74 1.74 39.07 3.01
559 589 2.051345 CAGTTTGCCCGCACGAAC 60.051 61.111 0.00 0.00 34.64 3.95
560 590 2.515057 ACAGTTTGCCCGCACGAA 60.515 55.556 0.00 0.00 0.00 3.85
561 591 2.970324 GACAGTTTGCCCGCACGA 60.970 61.111 0.00 0.00 0.00 4.35
562 592 4.368808 CGACAGTTTGCCCGCACG 62.369 66.667 0.00 0.00 0.00 5.34
563 593 3.236618 GACGACAGTTTGCCCGCAC 62.237 63.158 0.00 0.00 0.00 5.34
564 594 2.970324 GACGACAGTTTGCCCGCA 60.970 61.111 0.00 0.00 0.00 5.69
565 595 3.723348 GGACGACAGTTTGCCCGC 61.723 66.667 0.00 0.00 0.00 6.13
566 596 3.411351 CGGACGACAGTTTGCCCG 61.411 66.667 0.00 0.00 0.00 6.13
567 597 3.723348 GCGGACGACAGTTTGCCC 61.723 66.667 0.00 0.00 0.00 5.36
568 598 2.970324 TGCGGACGACAGTTTGCC 60.970 61.111 0.00 0.00 32.17 4.52
569 599 2.248431 GTGCGGACGACAGTTTGC 59.752 61.111 0.00 0.00 0.00 3.68
570 600 1.564622 CTGTGCGGACGACAGTTTG 59.435 57.895 1.60 0.00 36.79 2.93
571 601 4.027755 CTGTGCGGACGACAGTTT 57.972 55.556 1.60 0.00 36.79 2.66
574 604 0.039437 AACTACTGTGCGGACGACAG 60.039 55.000 16.79 16.79 45.39 3.51
575 605 0.386476 AAACTACTGTGCGGACGACA 59.614 50.000 1.60 0.00 0.00 4.35
576 606 1.058404 GAAACTACTGTGCGGACGAC 58.942 55.000 1.60 0.00 0.00 4.34
577 607 0.386352 CGAAACTACTGTGCGGACGA 60.386 55.000 1.60 0.00 0.00 4.20
578 608 0.386352 TCGAAACTACTGTGCGGACG 60.386 55.000 1.60 0.00 0.00 4.79
579 609 1.719780 CTTCGAAACTACTGTGCGGAC 59.280 52.381 0.00 0.00 0.00 4.79
580 610 1.338973 ACTTCGAAACTACTGTGCGGA 59.661 47.619 0.00 0.00 0.00 5.54
581 611 1.779569 ACTTCGAAACTACTGTGCGG 58.220 50.000 0.00 0.00 0.00 5.69
582 612 4.959631 TTTACTTCGAAACTACTGTGCG 57.040 40.909 0.00 0.00 0.00 5.34
583 613 5.128468 CGTTTTACTTCGAAACTACTGTGC 58.872 41.667 0.00 0.00 35.40 4.57
584 614 5.663292 CCGTTTTACTTCGAAACTACTGTG 58.337 41.667 0.00 0.00 35.40 3.66
585 615 4.209911 GCCGTTTTACTTCGAAACTACTGT 59.790 41.667 0.00 0.00 35.40 3.55
586 616 4.376717 GGCCGTTTTACTTCGAAACTACTG 60.377 45.833 0.00 0.00 35.40 2.74
587 617 3.742882 GGCCGTTTTACTTCGAAACTACT 59.257 43.478 0.00 0.00 35.40 2.57
588 618 3.422214 CGGCCGTTTTACTTCGAAACTAC 60.422 47.826 19.50 0.00 35.40 2.73
589 619 2.730928 CGGCCGTTTTACTTCGAAACTA 59.269 45.455 19.50 0.00 35.40 2.24
590 620 1.528161 CGGCCGTTTTACTTCGAAACT 59.472 47.619 19.50 0.00 35.40 2.66
591 621 1.941276 CGGCCGTTTTACTTCGAAAC 58.059 50.000 19.50 0.00 34.48 2.78
592 622 0.235404 GCGGCCGTTTTACTTCGAAA 59.765 50.000 28.70 0.00 0.00 3.46
593 623 0.879400 TGCGGCCGTTTTACTTCGAA 60.879 50.000 28.70 0.00 0.00 3.71
594 624 0.879400 TTGCGGCCGTTTTACTTCGA 60.879 50.000 28.70 3.73 0.00 3.71
595 625 0.452122 CTTGCGGCCGTTTTACTTCG 60.452 55.000 28.70 0.00 0.00 3.79
596 626 0.869730 TCTTGCGGCCGTTTTACTTC 59.130 50.000 28.70 7.68 0.00 3.01
628 658 3.797546 GCTCCTGCTCACTTGCGC 61.798 66.667 0.00 0.00 36.03 6.09
646 676 1.746470 CCCTTATCGTTTTCCGCCTT 58.254 50.000 0.00 0.00 36.19 4.35
699 757 2.714793 TCGAGAGTGACCCCAGGATATA 59.285 50.000 0.00 0.00 0.00 0.86
701 759 0.924090 TCGAGAGTGACCCCAGGATA 59.076 55.000 0.00 0.00 0.00 2.59
705 763 0.528470 GACTTCGAGAGTGACCCCAG 59.472 60.000 5.20 0.00 39.19 4.45
876 954 2.489722 GAGAAATTTGAGCAGGGTGGTC 59.510 50.000 0.00 0.00 44.54 4.02
884 962 3.337358 TCTGCGATGAGAAATTTGAGCA 58.663 40.909 0.00 0.00 0.00 4.26
906 984 1.557443 CGAGTGTGAGGTGGTTTCGC 61.557 60.000 0.00 0.00 0.00 4.70
908 986 1.784525 CTCGAGTGTGAGGTGGTTTC 58.215 55.000 3.62 0.00 32.18 2.78
916 994 0.249868 TTGGGTTGCTCGAGTGTGAG 60.250 55.000 15.13 0.00 39.05 3.51
936 1017 2.555757 GTTCTTGTTGCTGAGGATGCTT 59.444 45.455 0.00 0.00 0.00 3.91
937 1018 2.157738 GTTCTTGTTGCTGAGGATGCT 58.842 47.619 0.00 0.00 0.00 3.79
938 1019 1.200948 GGTTCTTGTTGCTGAGGATGC 59.799 52.381 0.00 0.00 0.00 3.91
939 1020 2.746362 GAGGTTCTTGTTGCTGAGGATG 59.254 50.000 0.00 0.00 0.00 3.51
940 1021 2.290577 GGAGGTTCTTGTTGCTGAGGAT 60.291 50.000 0.00 0.00 0.00 3.24
941 1022 1.072331 GGAGGTTCTTGTTGCTGAGGA 59.928 52.381 0.00 0.00 0.00 3.71
942 1023 1.072965 AGGAGGTTCTTGTTGCTGAGG 59.927 52.381 0.00 0.00 0.00 3.86
943 1024 2.557920 AGGAGGTTCTTGTTGCTGAG 57.442 50.000 0.00 0.00 0.00 3.35
944 1025 2.289694 GCTAGGAGGTTCTTGTTGCTGA 60.290 50.000 0.00 0.00 0.00 4.26
945 1026 2.079925 GCTAGGAGGTTCTTGTTGCTG 58.920 52.381 0.00 0.00 0.00 4.41
950 1031 1.900545 GCCGGCTAGGAGGTTCTTGT 61.901 60.000 22.15 0.00 45.00 3.16
952 1033 2.368011 GGCCGGCTAGGAGGTTCTT 61.368 63.158 28.56 0.00 45.00 2.52
955 1036 2.609610 TTGGCCGGCTAGGAGGTT 60.610 61.111 28.56 0.00 45.00 3.50
962 1043 0.036388 CTCTGTTTCTTGGCCGGCTA 60.036 55.000 28.56 19.98 0.00 3.93
983 1064 1.202758 ACATCTTGCTGTCCAACGGAA 60.203 47.619 0.00 0.00 31.38 4.30
991 1072 1.929836 GATCGGACACATCTTGCTGTC 59.070 52.381 0.00 0.00 36.78 3.51
993 1074 2.014335 TGATCGGACACATCTTGCTG 57.986 50.000 0.00 0.00 0.00 4.41
995 1076 2.606725 CTCTTGATCGGACACATCTTGC 59.393 50.000 0.00 0.00 0.00 4.01
1316 1415 2.586914 CGGCGAGCATGAGCATGA 60.587 61.111 14.27 0.00 45.49 3.07
1344 1443 3.793144 GCGAAGTTGAGGCAGGCG 61.793 66.667 0.00 0.00 0.00 5.52
1346 1445 3.121030 CGGCGAAGTTGAGGCAGG 61.121 66.667 0.00 0.00 0.00 4.85
1391 1490 4.392166 TGCGGTAGGAGGAGGCCA 62.392 66.667 5.01 0.00 0.00 5.36
1519 1618 3.812019 CTCGTCGTCGGTGAGGGG 61.812 72.222 1.55 0.00 37.69 4.79
1580 1679 2.049185 ATCTCGCTCAGCACGTCCT 61.049 57.895 0.00 0.00 0.00 3.85
1596 1695 0.983378 AGTACAGGTCCCAGCCCATC 60.983 60.000 0.00 0.00 0.00 3.51
1697 1799 3.633094 CTCCAGAGTGGCACGTCGG 62.633 68.421 12.71 13.40 37.47 4.79
1701 1803 1.153745 GTAGCTCCAGAGTGGCACG 60.154 63.158 12.71 0.00 37.47 5.34
1731 1833 2.803713 GAAGCAGCGCGAACTAGCC 61.804 63.158 12.10 0.00 0.00 3.93
1744 1846 3.740115 AGGAAAGCTAAAACTCGAAGCA 58.260 40.909 8.64 0.00 38.75 3.91
1745 1847 4.750952 AAGGAAAGCTAAAACTCGAAGC 57.249 40.909 0.00 0.00 36.48 3.86
1746 1848 6.017852 ACAGAAAGGAAAGCTAAAACTCGAAG 60.018 38.462 0.00 0.00 0.00 3.79
1752 1854 5.419760 ACGACAGAAAGGAAAGCTAAAAC 57.580 39.130 0.00 0.00 0.00 2.43
1758 1862 1.456165 GACGACGACAGAAAGGAAAGC 59.544 52.381 0.00 0.00 0.00 3.51
1764 1868 0.784778 GCCAAGACGACGACAGAAAG 59.215 55.000 0.00 0.00 0.00 2.62
1832 1937 3.119495 GCACCATCACATTACCAGAAACC 60.119 47.826 0.00 0.00 0.00 3.27
1928 2041 4.441792 CGTGGAGATGTGTTTCCATCATA 58.558 43.478 4.20 0.00 44.74 2.15
1929 2042 3.273434 CGTGGAGATGTGTTTCCATCAT 58.727 45.455 4.20 0.00 44.74 2.45
1930 2043 2.698803 CGTGGAGATGTGTTTCCATCA 58.301 47.619 4.20 0.00 44.74 3.07
1931 2044 1.398390 GCGTGGAGATGTGTTTCCATC 59.602 52.381 0.00 0.00 44.74 3.51
1932 2045 1.453155 GCGTGGAGATGTGTTTCCAT 58.547 50.000 0.00 0.00 44.74 3.41
1933 2046 0.948623 CGCGTGGAGATGTGTTTCCA 60.949 55.000 0.00 0.00 41.06 3.53
1934 2047 0.949105 ACGCGTGGAGATGTGTTTCC 60.949 55.000 12.93 0.00 0.00 3.13
1936 2049 0.033504 AGACGCGTGGAGATGTGTTT 59.966 50.000 20.70 0.00 31.74 2.83
1938 2051 0.388649 GAAGACGCGTGGAGATGTGT 60.389 55.000 20.70 0.00 34.40 3.72
1940 2053 1.154016 CGAAGACGCGTGGAGATGT 60.154 57.895 20.70 0.00 0.00 3.06
1941 2054 1.874019 CCGAAGACGCGTGGAGATG 60.874 63.158 20.70 0.47 38.29 2.90
1942 2055 2.044555 TCCGAAGACGCGTGGAGAT 61.045 57.895 20.70 0.00 38.29 2.75
1943 2056 2.670592 TCCGAAGACGCGTGGAGA 60.671 61.111 20.70 2.79 38.29 3.71
1944 2057 2.504244 GTCCGAAGACGCGTGGAG 60.504 66.667 20.70 4.90 38.29 3.86
1953 2066 1.170442 TACTGTGCATCGTCCGAAGA 58.830 50.000 0.00 0.00 0.00 2.87
1955 2068 1.921243 CATACTGTGCATCGTCCGAA 58.079 50.000 0.00 0.00 0.00 4.30
1974 2087 1.502163 GCCACGATGATGCACCTAGC 61.502 60.000 0.00 0.00 45.96 3.42
1975 2088 1.217585 CGCCACGATGATGCACCTAG 61.218 60.000 0.00 0.00 0.00 3.02
1976 2089 1.227234 CGCCACGATGATGCACCTA 60.227 57.895 0.00 0.00 0.00 3.08
1978 2091 3.576356 CCGCCACGATGATGCACC 61.576 66.667 0.00 0.00 0.00 5.01
1979 2092 3.576356 CCCGCCACGATGATGCAC 61.576 66.667 0.00 0.00 0.00 4.57
1980 2093 4.854924 CCCCGCCACGATGATGCA 62.855 66.667 0.00 0.00 0.00 3.96
1981 2094 2.449031 TATCCCCGCCACGATGATGC 62.449 60.000 0.00 0.00 0.00 3.91
1983 2096 0.762418 TTTATCCCCGCCACGATGAT 59.238 50.000 0.00 0.00 0.00 2.45
1984 2097 0.542333 TTTTATCCCCGCCACGATGA 59.458 50.000 0.00 0.00 0.00 2.92
1985 2098 1.266718 CATTTTATCCCCGCCACGATG 59.733 52.381 0.00 0.00 0.00 3.84
1986 2099 1.133915 ACATTTTATCCCCGCCACGAT 60.134 47.619 0.00 0.00 0.00 3.73
1987 2100 0.253610 ACATTTTATCCCCGCCACGA 59.746 50.000 0.00 0.00 0.00 4.35
1988 2101 0.380378 CACATTTTATCCCCGCCACG 59.620 55.000 0.00 0.00 0.00 4.94
1989 2102 0.744281 CCACATTTTATCCCCGCCAC 59.256 55.000 0.00 0.00 0.00 5.01
1990 2103 0.396417 CCCACATTTTATCCCCGCCA 60.396 55.000 0.00 0.00 0.00 5.69
1991 2104 0.106419 TCCCACATTTTATCCCCGCC 60.106 55.000 0.00 0.00 0.00 6.13
1992 2105 1.133915 TCTCCCACATTTTATCCCCGC 60.134 52.381 0.00 0.00 0.00 6.13
1993 2106 2.572290 GTCTCCCACATTTTATCCCCG 58.428 52.381 0.00 0.00 0.00 5.73
1994 2107 2.092592 ACGTCTCCCACATTTTATCCCC 60.093 50.000 0.00 0.00 0.00 4.81
1996 2109 5.638596 AAAACGTCTCCCACATTTTATCC 57.361 39.130 0.00 0.00 0.00 2.59
2034 2147 2.817834 GTTATGTGGCAGCGGCGA 60.818 61.111 12.98 0.00 42.47 5.54
2035 2148 3.876198 GGTTATGTGGCAGCGGCG 61.876 66.667 0.51 0.51 42.47 6.46
2036 2149 3.518068 GGGTTATGTGGCAGCGGC 61.518 66.667 0.00 0.00 40.13 6.53
2037 2150 2.828549 GGGGTTATGTGGCAGCGG 60.829 66.667 0.00 0.00 0.00 5.52
2040 2153 0.251564 TGGTTGGGGTTATGTGGCAG 60.252 55.000 0.00 0.00 0.00 4.85
2041 2154 0.540830 GTGGTTGGGGTTATGTGGCA 60.541 55.000 0.00 0.00 0.00 4.92
2042 2155 0.251608 AGTGGTTGGGGTTATGTGGC 60.252 55.000 0.00 0.00 0.00 5.01
2044 2157 2.745281 CGTTAGTGGTTGGGGTTATGTG 59.255 50.000 0.00 0.00 0.00 3.21
2046 2159 1.741145 GCGTTAGTGGTTGGGGTTATG 59.259 52.381 0.00 0.00 0.00 1.90
2047 2160 1.631898 AGCGTTAGTGGTTGGGGTTAT 59.368 47.619 0.00 0.00 0.00 1.89
2048 2161 1.058284 AGCGTTAGTGGTTGGGGTTA 58.942 50.000 0.00 0.00 0.00 2.85
2049 2162 0.536460 CAGCGTTAGTGGTTGGGGTT 60.536 55.000 0.00 0.00 0.00 4.11
2050 2163 1.072505 CAGCGTTAGTGGTTGGGGT 59.927 57.895 0.00 0.00 0.00 4.95
2051 2164 0.250553 TTCAGCGTTAGTGGTTGGGG 60.251 55.000 0.00 0.00 0.00 4.96
2055 2168 4.890088 TGTTAGATTCAGCGTTAGTGGTT 58.110 39.130 0.00 0.00 0.00 3.67
2056 2169 4.530710 TGTTAGATTCAGCGTTAGTGGT 57.469 40.909 0.00 0.00 0.00 4.16
2057 2170 5.856126 TTTGTTAGATTCAGCGTTAGTGG 57.144 39.130 0.00 0.00 0.00 4.00
2059 2172 8.094798 TCATTTTTGTTAGATTCAGCGTTAGT 57.905 30.769 0.00 0.00 0.00 2.24
2060 2173 8.948853 TTCATTTTTGTTAGATTCAGCGTTAG 57.051 30.769 0.00 0.00 0.00 2.34
2448 2561 0.249657 CTCCTTCTATCGGTGCAGCC 60.250 60.000 10.90 2.64 0.00 4.85
2449 2562 0.747255 TCTCCTTCTATCGGTGCAGC 59.253 55.000 5.64 5.64 0.00 5.25
2450 2563 2.690497 TCTTCTCCTTCTATCGGTGCAG 59.310 50.000 0.00 0.00 0.00 4.41
2451 2564 2.690497 CTCTTCTCCTTCTATCGGTGCA 59.310 50.000 0.00 0.00 0.00 4.57
2452 2565 2.035321 CCTCTTCTCCTTCTATCGGTGC 59.965 54.545 0.00 0.00 0.00 5.01
2453 2566 2.035321 GCCTCTTCTCCTTCTATCGGTG 59.965 54.545 0.00 0.00 0.00 4.94
2455 2568 2.593026 AGCCTCTTCTCCTTCTATCGG 58.407 52.381 0.00 0.00 0.00 4.18
2456 2569 4.664150 AAAGCCTCTTCTCCTTCTATCG 57.336 45.455 0.00 0.00 0.00 2.92
2458 2571 6.634889 AAGAAAAGCCTCTTCTCCTTCTAT 57.365 37.500 0.00 0.00 31.85 1.98
2459 2572 7.365117 CCATAAGAAAAGCCTCTTCTCCTTCTA 60.365 40.741 0.00 0.00 36.95 2.10
2460 2573 4.991789 AAGAAAAGCCTCTTCTCCTTCT 57.008 40.909 0.00 0.00 31.85 2.85
2461 2574 5.588246 CCATAAGAAAAGCCTCTTCTCCTTC 59.412 44.000 0.00 0.00 36.95 3.46
2462 2575 5.251700 TCCATAAGAAAAGCCTCTTCTCCTT 59.748 40.000 0.00 0.00 36.95 3.36
2464 2577 5.104259 TCCATAAGAAAAGCCTCTTCTCC 57.896 43.478 0.00 0.00 36.95 3.71
2465 2578 5.122519 CCTCCATAAGAAAAGCCTCTTCTC 58.877 45.833 0.00 0.00 36.95 2.87
2467 2580 4.080299 TCCCTCCATAAGAAAAGCCTCTTC 60.080 45.833 0.00 0.00 36.95 2.87
2469 2582 3.457749 CTCCCTCCATAAGAAAAGCCTCT 59.542 47.826 0.00 0.00 0.00 3.69
2470 2583 3.434310 CCTCCCTCCATAAGAAAAGCCTC 60.434 52.174 0.00 0.00 0.00 4.70
2472 2585 2.509964 TCCTCCCTCCATAAGAAAAGCC 59.490 50.000 0.00 0.00 0.00 4.35
2474 2587 4.040755 TCCTCCTCCCTCCATAAGAAAAG 58.959 47.826 0.00 0.00 0.00 2.27
2485 3170 3.193903 GCGTATCTATTTCCTCCTCCCTC 59.806 52.174 0.00 0.00 0.00 4.30
2486 3171 3.166679 GCGTATCTATTTCCTCCTCCCT 58.833 50.000 0.00 0.00 0.00 4.20
2487 3172 3.166679 AGCGTATCTATTTCCTCCTCCC 58.833 50.000 0.00 0.00 0.00 4.30
2491 3176 4.240175 ACGAAGCGTATCTATTTCCTCC 57.760 45.455 0.00 0.00 38.73 4.30
2492 3177 6.559886 CGAAAACGAAGCGTATCTATTTCCTC 60.560 42.308 0.00 0.00 39.99 3.71
2493 3178 5.231568 CGAAAACGAAGCGTATCTATTTCCT 59.768 40.000 0.00 0.00 39.99 3.36
2494 3179 5.230726 TCGAAAACGAAGCGTATCTATTTCC 59.769 40.000 0.00 0.00 39.99 3.13
2497 3182 5.803967 AGTTCGAAAACGAAGCGTATCTATT 59.196 36.000 0.00 0.00 39.99 1.73
2498 3183 5.229469 CAGTTCGAAAACGAAGCGTATCTAT 59.771 40.000 0.00 0.00 39.99 1.98
2500 3185 3.364023 CAGTTCGAAAACGAAGCGTATCT 59.636 43.478 0.00 0.00 39.99 1.98
2501 3186 3.646303 CAGTTCGAAAACGAAGCGTATC 58.354 45.455 0.00 0.00 39.99 2.24
2502 3187 2.159881 GCAGTTCGAAAACGAAGCGTAT 60.160 45.455 0.00 0.00 39.99 3.06
2503 3188 1.190763 GCAGTTCGAAAACGAAGCGTA 59.809 47.619 0.00 0.00 39.99 4.42
2505 3190 1.047542 CGCAGTTCGAAAACGAAGCG 61.048 55.000 18.33 18.33 43.66 4.68
2548 3584 0.390472 GAAGGCTGGTGAGAACGGAG 60.390 60.000 0.00 0.00 0.00 4.63
2559 3595 2.133281 TCATGGTTCATGAAGGCTGG 57.867 50.000 8.80 0.00 46.17 4.85
2573 3617 3.127548 CCAGTTCGAAATGGAAGTCATGG 59.872 47.826 35.02 8.52 46.59 3.66
2591 3635 3.826157 TGCTTTACTTTTGCTATGCCAGT 59.174 39.130 0.00 0.00 0.00 4.00
2594 3638 4.809673 ACTTGCTTTACTTTTGCTATGCC 58.190 39.130 0.00 0.00 0.00 4.40
2596 3640 7.649306 ACTTTGACTTGCTTTACTTTTGCTATG 59.351 33.333 0.00 0.00 0.00 2.23
2597 3641 7.716612 ACTTTGACTTGCTTTACTTTTGCTAT 58.283 30.769 0.00 0.00 0.00 2.97
2601 3645 7.810766 TTGACTTTGACTTGCTTTACTTTTG 57.189 32.000 0.00 0.00 0.00 2.44
2603 3647 6.531594 GCTTTGACTTTGACTTGCTTTACTTT 59.468 34.615 0.00 0.00 0.00 2.66
2606 3650 4.437820 CGCTTTGACTTTGACTTGCTTTAC 59.562 41.667 0.00 0.00 0.00 2.01
2611 3655 1.123655 GCGCTTTGACTTTGACTTGC 58.876 50.000 0.00 0.00 0.00 4.01
2614 3658 1.604278 GAAGGCGCTTTGACTTTGACT 59.396 47.619 10.44 0.00 46.68 3.41
2672 3725 3.005791 GCAAGTGATTTGGTTACCAAGCT 59.994 43.478 16.81 8.79 44.84 3.74
2675 3728 4.037446 GTCAGCAAGTGATTTGGTTACCAA 59.963 41.667 13.44 13.44 44.75 3.67
2683 3736 1.955778 TGGTGGTCAGCAAGTGATTTG 59.044 47.619 0.00 0.00 37.56 2.32
2701 3754 2.486191 GCACATGGGAGAGGACTAATGG 60.486 54.545 0.00 0.00 0.00 3.16
2702 3755 2.437281 AGCACATGGGAGAGGACTAATG 59.563 50.000 0.00 0.00 0.00 1.90
2707 3760 3.567478 ATTTAGCACATGGGAGAGGAC 57.433 47.619 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.