Multiple sequence alignment - TraesCS5A01G311000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G311000 chr5A 100.000 2663 0 0 1 2663 522869825 522867163 0.000000e+00 4918.0
1 TraesCS5A01G311000 chr5A 84.013 907 102 26 966 1845 522357688 522356798 0.000000e+00 832.0
2 TraesCS5A01G311000 chr5A 82.565 889 91 27 995 1843 522124624 522123760 0.000000e+00 725.0
3 TraesCS5A01G311000 chr5A 74.026 308 57 17 1511 1812 522605072 522604782 1.300000e-18 104.0
4 TraesCS5A01G311000 chr5A 77.564 156 32 3 1487 1642 522224376 522224528 1.020000e-14 91.6
5 TraesCS5A01G311000 chr5A 85.542 83 11 1 2565 2647 135538212 135538131 4.720000e-13 86.1
6 TraesCS5A01G311000 chr5A 92.683 41 1 2 2239 2277 568267642 568267682 1.030000e-04 58.4
7 TraesCS5A01G311000 chr5D 97.602 1001 23 1 845 1845 410874376 410873377 0.000000e+00 1714.0
8 TraesCS5A01G311000 chr5D 90.335 776 35 13 1901 2663 410873378 410872630 0.000000e+00 981.0
9 TraesCS5A01G311000 chr5D 84.286 910 97 29 966 1845 410638272 410637379 0.000000e+00 846.0
10 TraesCS5A01G311000 chr5D 82.735 892 85 31 995 1845 410607146 410606283 0.000000e+00 730.0
11 TraesCS5A01G311000 chr5D 88.235 306 29 5 2270 2571 61612303 61612605 2.520000e-95 359.0
12 TraesCS5A01G311000 chr5D 92.667 150 11 0 54 203 410874561 410874412 1.610000e-52 217.0
13 TraesCS5A01G311000 chr5D 89.286 84 9 0 1511 1594 410842794 410842711 3.630000e-19 106.0
14 TraesCS5A01G311000 chr5D 77.848 158 32 3 1485 1642 410620974 410621128 7.850000e-16 95.3
15 TraesCS5A01G311000 chr5D 85.393 89 13 0 1501 1589 410491456 410491544 2.820000e-15 93.5
16 TraesCS5A01G311000 chr5D 94.444 54 2 1 249 302 410874416 410874364 6.110000e-12 82.4
17 TraesCS5A01G311000 chr5B 95.737 868 37 0 851 1718 493286773 493285906 0.000000e+00 1399.0
18 TraesCS5A01G311000 chr5B 84.174 872 94 24 966 1807 493125430 493124573 0.000000e+00 806.0
19 TraesCS5A01G311000 chr5B 83.511 843 80 24 995 1806 492820193 492819379 0.000000e+00 732.0
20 TraesCS5A01G311000 chr5B 83.333 384 60 2 1050 1432 492782523 492782903 4.220000e-93 351.0
21 TraesCS5A01G311000 chr5B 86.780 295 22 6 11 297 493290109 493289824 1.990000e-81 313.0
22 TraesCS5A01G311000 chr5B 94.146 205 8 1 2070 2274 493284880 493284680 2.570000e-80 309.0
23 TraesCS5A01G311000 chr5B 95.484 155 6 1 1931 2085 493285359 493285206 2.050000e-61 246.0
24 TraesCS5A01G311000 chr5B 87.143 210 21 5 360 567 570515486 570515281 1.590000e-57 233.0
25 TraesCS5A01G311000 chr5B 97.778 135 2 1 1712 1845 493285508 493285374 5.730000e-57 231.0
26 TraesCS5A01G311000 chr5B 89.286 84 9 0 1511 1594 493159576 493159493 3.630000e-19 106.0
27 TraesCS5A01G311000 chr5B 85.393 89 13 0 1501 1589 492783146 492783234 2.820000e-15 93.5
28 TraesCS5A01G311000 chr3D 89.145 304 23 7 2268 2565 296989409 296989708 1.160000e-98 370.0
29 TraesCS5A01G311000 chr1D 87.578 322 32 4 2250 2568 317683655 317683971 1.510000e-97 366.0
30 TraesCS5A01G311000 chr4D 88.963 299 28 4 2273 2568 109373651 109373355 5.420000e-97 364.0
31 TraesCS5A01G311000 chr4D 88.629 299 28 3 2273 2568 220605737 220605442 2.520000e-95 359.0
32 TraesCS5A01G311000 chr4D 87.179 78 6 3 2565 2640 509823332 509823407 4.720000e-13 86.1
33 TraesCS5A01G311000 chr2B 88.487 304 26 7 2275 2574 256846367 256846069 2.520000e-95 359.0
34 TraesCS5A01G311000 chr2B 87.622 307 30 6 2272 2574 362908759 362908457 1.520000e-92 350.0
35 TraesCS5A01G311000 chr2B 87.736 212 20 5 358 567 39411705 39411498 2.650000e-60 243.0
36 TraesCS5A01G311000 chr2B 86.256 211 22 5 358 567 364788123 364787919 3.450000e-54 222.0
37 TraesCS5A01G311000 chr2B 86.256 211 22 5 358 567 456053580 456053784 3.450000e-54 222.0
38 TraesCS5A01G311000 chr2B 100.000 30 0 0 766 795 644222427 644222456 3.700000e-04 56.5
39 TraesCS5A01G311000 chr7D 87.821 312 27 5 2273 2580 1525545 1525241 3.260000e-94 355.0
40 TraesCS5A01G311000 chr7D 82.586 379 43 4 308 665 2337194 2336818 1.990000e-81 313.0
41 TraesCS5A01G311000 chr2A 78.063 506 69 18 358 841 519871360 519870875 5.610000e-72 281.0
42 TraesCS5A01G311000 chr2A 86.747 83 9 2 2565 2646 763245519 763245438 1.020000e-14 91.6
43 TraesCS5A01G311000 chr7A 80.994 342 43 12 502 842 411627926 411627606 4.400000e-63 252.0
44 TraesCS5A01G311000 chr7A 86.747 83 8 3 2565 2645 61815943 61816024 3.650000e-14 89.8
45 TraesCS5A01G311000 chr7A 86.047 86 8 4 2565 2647 67509717 67509633 3.650000e-14 89.8
46 TraesCS5A01G311000 chr3A 80.682 352 38 19 502 849 208461038 208461363 2.050000e-61 246.0
47 TraesCS5A01G311000 chr4A 80.059 341 48 10 502 841 701933989 701934310 4.430000e-58 235.0
48 TraesCS5A01G311000 chr4A 94.444 36 2 0 2238 2273 703218551 703218586 3.700000e-04 56.5
49 TraesCS5A01G311000 chr3B 86.730 211 24 3 358 567 28635285 28635492 5.730000e-57 231.0
50 TraesCS5A01G311000 chr3B 79.942 344 44 16 502 841 496458288 496458610 2.060000e-56 230.0
51 TraesCS5A01G311000 chr3B 97.222 36 0 1 2243 2277 291303166 291303131 2.860000e-05 60.2
52 TraesCS5A01G311000 chr3B 89.130 46 3 2 2230 2273 448755532 448755577 3.700000e-04 56.5
53 TraesCS5A01G311000 chr4B 86.667 210 22 5 360 567 618107654 618107449 7.420000e-56 228.0
54 TraesCS5A01G311000 chr4B 94.595 37 1 1 2242 2277 520466296 520466332 3.700000e-04 56.5
55 TraesCS5A01G311000 chr7B 86.256 211 24 4 358 567 212825049 212825255 9.590000e-55 224.0
56 TraesCS5A01G311000 chr7B 88.000 75 7 2 2567 2640 40192300 40192373 1.310000e-13 87.9
57 TraesCS5A01G311000 chr2D 78.947 342 49 12 502 841 637345668 637345988 7.470000e-51 211.0
58 TraesCS5A01G311000 chr6A 89.610 77 6 2 2565 2640 137532412 137532487 2.180000e-16 97.1
59 TraesCS5A01G311000 chr6A 87.013 77 8 2 2565 2640 168121793 168121868 4.720000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G311000 chr5A 522867163 522869825 2662 True 4918.00 4918 100.000 1 2663 1 chr5A.!!$R5 2662
1 TraesCS5A01G311000 chr5A 522356798 522357688 890 True 832.00 832 84.013 966 1845 1 chr5A.!!$R3 879
2 TraesCS5A01G311000 chr5A 522123760 522124624 864 True 725.00 725 82.565 995 1843 1 chr5A.!!$R2 848
3 TraesCS5A01G311000 chr5D 410637379 410638272 893 True 846.00 846 84.286 966 1845 1 chr5D.!!$R2 879
4 TraesCS5A01G311000 chr5D 410872630 410874561 1931 True 748.60 1714 93.762 54 2663 4 chr5D.!!$R4 2609
5 TraesCS5A01G311000 chr5D 410606283 410607146 863 True 730.00 730 82.735 995 1845 1 chr5D.!!$R1 850
6 TraesCS5A01G311000 chr5B 493124573 493125430 857 True 806.00 806 84.174 966 1807 1 chr5B.!!$R2 841
7 TraesCS5A01G311000 chr5B 492819379 492820193 814 True 732.00 732 83.511 995 1806 1 chr5B.!!$R1 811
8 TraesCS5A01G311000 chr5B 493284680 493290109 5429 True 499.60 1399 93.985 11 2274 5 chr5B.!!$R5 2263
9 TraesCS5A01G311000 chr5B 492782523 492783234 711 False 222.25 351 84.363 1050 1589 2 chr5B.!!$F1 539

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
373 382 0.031721 GAGCTTACCCATACCCGTCG 59.968 60.0 0.0 0.0 0.0 5.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2304 5945 0.037697 TTGGTCGCGATGTACAAGCT 60.038 50.0 14.06 0.0 0.0 3.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 3.640029 TCCGTAAGTATCCCATGAAGACC 59.360 47.826 0.00 0.00 0.00 3.85
46 47 3.641906 CCGTAAGTATCCCATGAAGACCT 59.358 47.826 0.00 0.00 0.00 3.85
47 48 4.831155 CCGTAAGTATCCCATGAAGACCTA 59.169 45.833 0.00 0.00 0.00 3.08
48 49 5.278858 CCGTAAGTATCCCATGAAGACCTAC 60.279 48.000 0.00 0.00 0.00 3.18
49 50 5.278858 CGTAAGTATCCCATGAAGACCTACC 60.279 48.000 0.00 0.00 0.00 3.18
50 51 4.280789 AGTATCCCATGAAGACCTACCA 57.719 45.455 0.00 0.00 0.00 3.25
51 52 4.631234 AGTATCCCATGAAGACCTACCAA 58.369 43.478 0.00 0.00 0.00 3.67
52 53 5.227593 AGTATCCCATGAAGACCTACCAAT 58.772 41.667 0.00 0.00 0.00 3.16
61 62 4.466370 TGAAGACCTACCAATCTACCACTG 59.534 45.833 0.00 0.00 0.00 3.66
92 100 0.445043 GAAACCCATACGTGAACCGC 59.555 55.000 0.00 0.00 41.42 5.68
100 108 0.747644 TACGTGAACCGCCGGATCTA 60.748 55.000 11.71 0.00 41.42 1.98
162 170 1.426751 CACCCCGGGCCTAGTTATAA 58.573 55.000 17.73 0.00 0.00 0.98
197 205 4.022676 GCCTCGGGATTTTTCTGTAAAACA 60.023 41.667 0.00 0.00 38.48 2.83
209 217 5.163302 TCTGTAAAACACACGAAATGGTG 57.837 39.130 0.00 0.00 43.54 4.17
241 249 3.555168 GCCACCCCTTAGATTACAGATCG 60.555 52.174 0.00 0.00 0.00 3.69
242 250 3.895656 CCACCCCTTAGATTACAGATCGA 59.104 47.826 0.00 0.00 0.00 3.59
243 251 4.262079 CCACCCCTTAGATTACAGATCGAC 60.262 50.000 0.00 0.00 0.00 4.20
244 252 3.568853 ACCCCTTAGATTACAGATCGACG 59.431 47.826 0.00 0.00 0.00 5.12
246 254 3.566523 CCTTAGATTACAGATCGACGGC 58.433 50.000 0.00 0.00 0.00 5.68
247 255 3.253677 CCTTAGATTACAGATCGACGGCT 59.746 47.826 0.00 0.00 0.00 5.52
249 257 2.298610 AGATTACAGATCGACGGCTCA 58.701 47.619 0.00 0.00 0.00 4.26
250 258 2.033550 AGATTACAGATCGACGGCTCAC 59.966 50.000 0.00 0.00 0.00 3.51
294 303 3.134804 CGGGATACTTCCTCCATCAAGTT 59.865 47.826 0.00 0.00 42.20 2.66
297 306 6.464465 CGGGATACTTCCTCCATCAAGTTTAT 60.464 42.308 0.00 0.00 42.20 1.40
298 307 6.712547 GGGATACTTCCTCCATCAAGTTTATG 59.287 42.308 0.00 0.00 42.20 1.90
299 308 6.712547 GGATACTTCCTCCATCAAGTTTATGG 59.287 42.308 9.48 9.48 39.14 2.74
309 318 4.280436 TCAAGTTTATGGATGACACGGT 57.720 40.909 0.00 0.00 0.00 4.83
311 320 5.067273 TCAAGTTTATGGATGACACGGTTT 58.933 37.500 0.00 0.00 0.00 3.27
312 321 5.533154 TCAAGTTTATGGATGACACGGTTTT 59.467 36.000 0.00 0.00 0.00 2.43
313 322 5.371115 AGTTTATGGATGACACGGTTTTG 57.629 39.130 0.00 0.00 0.00 2.44
315 324 2.286365 ATGGATGACACGGTTTTGGT 57.714 45.000 0.00 0.00 0.00 3.67
316 325 2.932855 TGGATGACACGGTTTTGGTA 57.067 45.000 0.00 0.00 0.00 3.25
317 326 2.496111 TGGATGACACGGTTTTGGTAC 58.504 47.619 0.00 0.00 0.00 3.34
319 328 1.461897 GATGACACGGTTTTGGTACGG 59.538 52.381 0.00 0.00 0.00 4.02
320 329 0.532417 TGACACGGTTTTGGTACGGG 60.532 55.000 0.00 0.00 37.00 5.28
322 331 0.814812 ACACGGTTTTGGTACGGGTG 60.815 55.000 0.00 0.00 43.37 4.61
323 332 0.532417 CACGGTTTTGGTACGGGTGA 60.532 55.000 0.00 0.00 0.00 4.02
324 333 0.179936 ACGGTTTTGGTACGGGTGAA 59.820 50.000 0.00 0.00 0.00 3.18
325 334 0.869730 CGGTTTTGGTACGGGTGAAG 59.130 55.000 0.00 0.00 0.00 3.02
326 335 0.594602 GGTTTTGGTACGGGTGAAGC 59.405 55.000 0.00 0.00 0.00 3.86
328 337 0.183014 TTTTGGTACGGGTGAAGCCA 59.817 50.000 0.00 0.00 39.65 4.75
338 347 3.478540 GTGAAGCCACCTCATACCC 57.521 57.895 0.00 0.00 37.33 3.69
339 348 0.912486 GTGAAGCCACCTCATACCCT 59.088 55.000 0.00 0.00 37.33 4.34
341 350 2.504175 GTGAAGCCACCTCATACCCTTA 59.496 50.000 0.00 0.00 37.33 2.69
342 351 2.504175 TGAAGCCACCTCATACCCTTAC 59.496 50.000 0.00 0.00 0.00 2.34
343 352 1.508256 AGCCACCTCATACCCTTACC 58.492 55.000 0.00 0.00 0.00 2.85
346 355 2.478292 CCACCTCATACCCTTACCTGT 58.522 52.381 0.00 0.00 0.00 4.00
347 356 2.434702 CCACCTCATACCCTTACCTGTC 59.565 54.545 0.00 0.00 0.00 3.51
348 357 3.375699 CACCTCATACCCTTACCTGTCT 58.624 50.000 0.00 0.00 0.00 3.41
349 358 3.385111 CACCTCATACCCTTACCTGTCTC 59.615 52.174 0.00 0.00 0.00 3.36
350 359 2.623889 CCTCATACCCTTACCTGTCTCG 59.376 54.545 0.00 0.00 0.00 4.04
351 360 3.288964 CTCATACCCTTACCTGTCTCGT 58.711 50.000 0.00 0.00 0.00 4.18
352 361 3.285484 TCATACCCTTACCTGTCTCGTC 58.715 50.000 0.00 0.00 0.00 4.20
353 362 3.053842 TCATACCCTTACCTGTCTCGTCT 60.054 47.826 0.00 0.00 0.00 4.18
354 363 1.546961 ACCCTTACCTGTCTCGTCTG 58.453 55.000 0.00 0.00 0.00 3.51
355 364 1.075050 ACCCTTACCTGTCTCGTCTGA 59.925 52.381 0.00 0.00 0.00 3.27
356 365 1.746220 CCCTTACCTGTCTCGTCTGAG 59.254 57.143 0.00 0.00 43.99 3.35
357 366 1.133407 CCTTACCTGTCTCGTCTGAGC 59.867 57.143 0.00 0.00 42.26 4.26
358 367 2.088423 CTTACCTGTCTCGTCTGAGCT 58.912 52.381 0.00 0.00 42.26 4.09
361 370 1.813786 ACCTGTCTCGTCTGAGCTTAC 59.186 52.381 0.00 0.00 42.26 2.34
363 372 1.133407 CTGTCTCGTCTGAGCTTACCC 59.867 57.143 0.00 0.00 42.26 3.69
365 374 1.751924 GTCTCGTCTGAGCTTACCCAT 59.248 52.381 0.00 0.00 42.26 4.00
366 375 2.950309 GTCTCGTCTGAGCTTACCCATA 59.050 50.000 0.00 0.00 42.26 2.74
367 376 2.950309 TCTCGTCTGAGCTTACCCATAC 59.050 50.000 0.00 0.00 42.26 2.39
368 377 2.029623 TCGTCTGAGCTTACCCATACC 58.970 52.381 0.00 0.00 0.00 2.73
369 378 1.068741 CGTCTGAGCTTACCCATACCC 59.931 57.143 0.00 0.00 0.00 3.69
370 379 1.068741 GTCTGAGCTTACCCATACCCG 59.931 57.143 0.00 0.00 0.00 5.28
372 381 1.068741 CTGAGCTTACCCATACCCGTC 59.931 57.143 0.00 0.00 0.00 4.79
373 382 0.031721 GAGCTTACCCATACCCGTCG 59.968 60.000 0.00 0.00 0.00 5.12
374 383 0.396139 AGCTTACCCATACCCGTCGA 60.396 55.000 0.00 0.00 0.00 4.20
375 384 0.677842 GCTTACCCATACCCGTCGAT 59.322 55.000 0.00 0.00 0.00 3.59
376 385 1.604693 GCTTACCCATACCCGTCGATG 60.605 57.143 0.00 0.00 0.00 3.84
377 386 1.000506 CTTACCCATACCCGTCGATGG 59.999 57.143 17.27 17.27 42.06 3.51
385 394 3.772619 CCCGTCGATGGGTACAATT 57.227 52.632 31.46 0.00 44.76 2.32
406 415 4.637387 TTTTTCTCATACCCGTTACCCA 57.363 40.909 0.00 0.00 0.00 4.51
408 417 3.615224 TTCTCATACCCGTTACCCAAC 57.385 47.619 0.00 0.00 0.00 3.77
409 418 2.538222 TCTCATACCCGTTACCCAACA 58.462 47.619 0.00 0.00 34.05 3.33
410 419 2.498481 TCTCATACCCGTTACCCAACAG 59.502 50.000 0.00 0.00 34.05 3.16
411 420 1.555992 TCATACCCGTTACCCAACAGG 59.444 52.381 0.00 0.00 38.08 4.00
422 431 1.887797 CCCAACAGGGTAGATGGGTA 58.112 55.000 1.45 0.00 44.26 3.69
423 432 1.489230 CCCAACAGGGTAGATGGGTAC 59.511 57.143 1.45 0.00 44.26 3.34
424 433 3.818131 CCCAACAGGGTAGATGGGTACC 61.818 59.091 2.17 2.17 44.26 3.34
445 711 4.274978 CCCACGGGTAAAATTTCCTATGT 58.725 43.478 0.00 0.00 0.00 2.29
447 713 5.186215 CCCACGGGTAAAATTTCCTATGTTT 59.814 40.000 0.00 0.00 0.00 2.83
449 715 5.575218 CACGGGTAAAATTTCCTATGTTTGC 59.425 40.000 0.00 0.00 0.00 3.68
451 717 6.159988 CGGGTAAAATTTCCTATGTTTGCAA 58.840 36.000 0.00 0.00 0.00 4.08
457 723 7.671495 AAATTTCCTATGTTTGCAAACCATC 57.329 32.000 33.33 14.21 38.11 3.51
463 729 6.649973 TCCTATGTTTGCAAACCATCAATTTG 59.350 34.615 33.33 17.43 39.57 2.32
465 731 6.939132 ATGTTTGCAAACCATCAATTTGAA 57.061 29.167 33.33 14.86 39.01 2.69
466 732 6.939132 TGTTTGCAAACCATCAATTTGAAT 57.061 29.167 33.33 0.00 39.01 2.57
469 735 8.341173 TGTTTGCAAACCATCAATTTGAATAAC 58.659 29.630 33.33 8.79 39.01 1.89
471 737 7.887996 TGCAAACCATCAATTTGAATAACTC 57.112 32.000 2.68 0.00 39.01 3.01
472 738 7.440198 TGCAAACCATCAATTTGAATAACTCA 58.560 30.769 2.68 0.00 39.01 3.41
474 740 9.585099 GCAAACCATCAATTTGAATAACTCATA 57.415 29.630 2.68 0.00 39.01 2.15
478 744 8.830580 ACCATCAATTTGAATAACTCATAGTCG 58.169 33.333 2.68 0.00 32.78 4.18
488 754 9.478768 TGAATAACTCATAGTCGTAAACAACAA 57.521 29.630 0.00 0.00 31.22 2.83
489 755 9.737025 GAATAACTCATAGTCGTAAACAACAAC 57.263 33.333 0.00 0.00 0.00 3.32
490 756 8.821147 ATAACTCATAGTCGTAAACAACAACA 57.179 30.769 0.00 0.00 0.00 3.33
492 758 8.821147 AACTCATAGTCGTAAACAACAACATA 57.179 30.769 0.00 0.00 0.00 2.29
493 759 8.997621 ACTCATAGTCGTAAACAACAACATAT 57.002 30.769 0.00 0.00 0.00 1.78
565 892 6.856494 TTGTAAACGACAACACATCAAAAC 57.144 33.333 0.00 0.00 43.30 2.43
566 893 5.939457 TGTAAACGACAACACATCAAAACA 58.061 33.333 0.00 0.00 34.15 2.83
568 895 7.694886 TGTAAACGACAACACATCAAAACATA 58.305 30.769 0.00 0.00 34.15 2.29
569 896 8.182227 TGTAAACGACAACACATCAAAACATAA 58.818 29.630 0.00 0.00 34.15 1.90
571 898 7.851822 AACGACAACACATCAAAACATAATC 57.148 32.000 0.00 0.00 0.00 1.75
572 899 6.378582 ACGACAACACATCAAAACATAATCC 58.621 36.000 0.00 0.00 0.00 3.01
573 900 5.799936 CGACAACACATCAAAACATAATCCC 59.200 40.000 0.00 0.00 0.00 3.85
574 901 6.569418 CGACAACACATCAAAACATAATCCCA 60.569 38.462 0.00 0.00 0.00 4.37
575 902 7.243604 ACAACACATCAAAACATAATCCCAT 57.756 32.000 0.00 0.00 0.00 4.00
576 903 8.359875 ACAACACATCAAAACATAATCCCATA 57.640 30.769 0.00 0.00 0.00 2.74
577 904 8.250332 ACAACACATCAAAACATAATCCCATAC 58.750 33.333 0.00 0.00 0.00 2.39
578 905 8.469200 CAACACATCAAAACATAATCCCATACT 58.531 33.333 0.00 0.00 0.00 2.12
579 906 8.225603 ACACATCAAAACATAATCCCATACTC 57.774 34.615 0.00 0.00 0.00 2.59
580 907 7.012327 ACACATCAAAACATAATCCCATACTCG 59.988 37.037 0.00 0.00 0.00 4.18
581 908 7.012327 CACATCAAAACATAATCCCATACTCGT 59.988 37.037 0.00 0.00 0.00 4.18
582 909 8.208224 ACATCAAAACATAATCCCATACTCGTA 58.792 33.333 0.00 0.00 0.00 3.43
583 910 8.495949 CATCAAAACATAATCCCATACTCGTAC 58.504 37.037 0.00 0.00 0.00 3.67
584 911 7.557724 TCAAAACATAATCCCATACTCGTACA 58.442 34.615 0.00 0.00 0.00 2.90
585 912 8.208224 TCAAAACATAATCCCATACTCGTACAT 58.792 33.333 0.00 0.00 0.00 2.29
586 913 8.836413 CAAAACATAATCCCATACTCGTACATT 58.164 33.333 0.00 0.00 0.00 2.71
587 914 8.974060 AAACATAATCCCATACTCGTACATTT 57.026 30.769 0.00 0.00 0.00 2.32
588 915 8.974060 AACATAATCCCATACTCGTACATTTT 57.026 30.769 0.00 0.00 0.00 1.82
589 916 8.974060 ACATAATCCCATACTCGTACATTTTT 57.026 30.769 0.00 0.00 0.00 1.94
594 921 8.658499 ATCCCATACTCGTACATTTTTAGTTC 57.342 34.615 0.00 0.00 0.00 3.01
595 922 7.613585 TCCCATACTCGTACATTTTTAGTTCA 58.386 34.615 0.00 0.00 0.00 3.18
596 923 7.546667 TCCCATACTCGTACATTTTTAGTTCAC 59.453 37.037 0.00 0.00 0.00 3.18
597 924 7.332430 CCCATACTCGTACATTTTTAGTTCACA 59.668 37.037 0.00 0.00 0.00 3.58
598 925 8.714179 CCATACTCGTACATTTTTAGTTCACAA 58.286 33.333 0.00 0.00 0.00 3.33
602 929 9.659830 ACTCGTACATTTTTAGTTCACAAATTC 57.340 29.630 0.00 0.00 0.00 2.17
603 930 9.658475 CTCGTACATTTTTAGTTCACAAATTCA 57.342 29.630 0.00 0.00 0.00 2.57
608 935 9.814899 ACATTTTTAGTTCACAAATTCATGACA 57.185 25.926 0.00 0.00 0.00 3.58
612 939 9.868277 TTTTAGTTCACAAATTCATGACAAAGT 57.132 25.926 0.00 0.00 0.00 2.66
613 940 8.854979 TTAGTTCACAAATTCATGACAAAGTG 57.145 30.769 0.00 3.05 0.00 3.16
614 941 7.099266 AGTTCACAAATTCATGACAAAGTGA 57.901 32.000 13.28 13.28 33.44 3.41
615 942 7.546358 AGTTCACAAATTCATGACAAAGTGAA 58.454 30.769 20.33 20.33 40.98 3.18
616 943 7.703621 AGTTCACAAATTCATGACAAAGTGAAG 59.296 33.333 22.83 7.22 43.00 3.02
617 944 7.332213 TCACAAATTCATGACAAAGTGAAGA 57.668 32.000 14.37 3.76 37.72 2.87
618 945 7.420002 TCACAAATTCATGACAAAGTGAAGAG 58.580 34.615 14.37 0.00 37.72 2.85
619 946 7.282901 TCACAAATTCATGACAAAGTGAAGAGA 59.717 33.333 14.37 0.00 37.72 3.10
620 947 8.080417 CACAAATTCATGACAAAGTGAAGAGAT 58.920 33.333 10.44 0.00 37.72 2.75
621 948 9.288576 ACAAATTCATGACAAAGTGAAGAGATA 57.711 29.630 0.00 0.00 37.72 1.98
630 957 9.342308 TGACAAAGTGAAGAGATAATTTTGAGT 57.658 29.630 0.00 0.00 0.00 3.41
664 991 9.755804 GATATGATATGAGTACATGGGTATGTG 57.244 37.037 0.00 0.00 46.63 3.21
665 992 6.358974 TGATATGAGTACATGGGTATGTGG 57.641 41.667 0.00 0.00 46.63 4.17
666 993 5.248248 TGATATGAGTACATGGGTATGTGGG 59.752 44.000 0.00 0.00 46.63 4.61
667 994 2.840511 TGAGTACATGGGTATGTGGGT 58.159 47.619 0.00 0.00 46.63 4.51
668 995 2.503765 TGAGTACATGGGTATGTGGGTG 59.496 50.000 0.00 0.00 46.63 4.61
669 996 2.504175 GAGTACATGGGTATGTGGGTGT 59.496 50.000 0.00 0.00 46.63 4.16
670 997 2.238646 AGTACATGGGTATGTGGGTGTG 59.761 50.000 0.00 0.00 46.63 3.82
671 998 0.331278 ACATGGGTATGTGGGTGTGG 59.669 55.000 0.00 0.00 45.54 4.17
672 999 0.395586 CATGGGTATGTGGGTGTGGG 60.396 60.000 0.00 0.00 0.00 4.61
673 1000 0.849094 ATGGGTATGTGGGTGTGGGT 60.849 55.000 0.00 0.00 0.00 4.51
674 1001 1.001393 GGGTATGTGGGTGTGGGTG 60.001 63.158 0.00 0.00 0.00 4.61
675 1002 1.765074 GGTATGTGGGTGTGGGTGT 59.235 57.895 0.00 0.00 0.00 4.16
676 1003 0.608035 GGTATGTGGGTGTGGGTGTG 60.608 60.000 0.00 0.00 0.00 3.82
677 1004 0.608035 GTATGTGGGTGTGGGTGTGG 60.608 60.000 0.00 0.00 0.00 4.17
678 1005 1.784301 TATGTGGGTGTGGGTGTGGG 61.784 60.000 0.00 0.00 0.00 4.61
679 1006 3.816090 GTGGGTGTGGGTGTGGGT 61.816 66.667 0.00 0.00 0.00 4.51
680 1007 3.024356 TGGGTGTGGGTGTGGGTT 61.024 61.111 0.00 0.00 0.00 4.11
681 1008 1.696674 TGGGTGTGGGTGTGGGTTA 60.697 57.895 0.00 0.00 0.00 2.85
682 1009 1.068943 TGGGTGTGGGTGTGGGTTAT 61.069 55.000 0.00 0.00 0.00 1.89
683 1010 0.113580 GGGTGTGGGTGTGGGTTATT 59.886 55.000 0.00 0.00 0.00 1.40
684 1011 1.541379 GGTGTGGGTGTGGGTTATTC 58.459 55.000 0.00 0.00 0.00 1.75
685 1012 1.202952 GGTGTGGGTGTGGGTTATTCA 60.203 52.381 0.00 0.00 0.00 2.57
686 1013 2.556559 GGTGTGGGTGTGGGTTATTCAT 60.557 50.000 0.00 0.00 0.00 2.57
687 1014 2.752903 GTGTGGGTGTGGGTTATTCATC 59.247 50.000 0.00 0.00 0.00 2.92
688 1015 2.376855 TGTGGGTGTGGGTTATTCATCA 59.623 45.455 0.00 0.00 0.00 3.07
689 1016 2.752903 GTGGGTGTGGGTTATTCATCAC 59.247 50.000 0.00 0.00 0.00 3.06
690 1017 2.376855 TGGGTGTGGGTTATTCATCACA 59.623 45.455 0.00 0.00 37.73 3.58
691 1018 3.181428 TGGGTGTGGGTTATTCATCACAA 60.181 43.478 0.00 0.00 41.05 3.33
692 1019 3.829601 GGGTGTGGGTTATTCATCACAAA 59.170 43.478 0.00 0.00 41.05 2.83
693 1020 4.466015 GGGTGTGGGTTATTCATCACAAAT 59.534 41.667 0.00 0.00 41.05 2.32
694 1021 5.046663 GGGTGTGGGTTATTCATCACAAATT 60.047 40.000 0.00 0.00 41.05 1.82
695 1022 6.099341 GGTGTGGGTTATTCATCACAAATTC 58.901 40.000 0.00 0.00 41.05 2.17
696 1023 5.799936 GTGTGGGTTATTCATCACAAATTCG 59.200 40.000 0.00 0.00 41.05 3.34
697 1024 5.475220 TGTGGGTTATTCATCACAAATTCGT 59.525 36.000 0.00 0.00 37.22 3.85
698 1025 6.015856 TGTGGGTTATTCATCACAAATTCGTT 60.016 34.615 0.00 0.00 37.22 3.85
699 1026 6.526674 GTGGGTTATTCATCACAAATTCGTTC 59.473 38.462 0.00 0.00 0.00 3.95
700 1027 6.033966 GGGTTATTCATCACAAATTCGTTCC 58.966 40.000 0.00 0.00 0.00 3.62
701 1028 6.033966 GGTTATTCATCACAAATTCGTTCCC 58.966 40.000 0.00 0.00 0.00 3.97
702 1029 3.822594 TTCATCACAAATTCGTTCCCG 57.177 42.857 0.00 0.00 0.00 5.14
703 1030 2.773487 TCATCACAAATTCGTTCCCGT 58.227 42.857 0.00 0.00 35.01 5.28
704 1031 3.927854 TCATCACAAATTCGTTCCCGTA 58.072 40.909 0.00 0.00 35.01 4.02
705 1032 3.680937 TCATCACAAATTCGTTCCCGTAC 59.319 43.478 0.00 0.00 35.01 3.67
706 1033 2.415776 TCACAAATTCGTTCCCGTACC 58.584 47.619 0.00 0.00 35.01 3.34
707 1034 2.037511 TCACAAATTCGTTCCCGTACCT 59.962 45.455 0.00 0.00 35.01 3.08
708 1035 3.257873 TCACAAATTCGTTCCCGTACCTA 59.742 43.478 0.00 0.00 35.01 3.08
709 1036 4.081531 TCACAAATTCGTTCCCGTACCTAT 60.082 41.667 0.00 0.00 35.01 2.57
710 1037 5.126869 TCACAAATTCGTTCCCGTACCTATA 59.873 40.000 0.00 0.00 35.01 1.31
711 1038 5.987347 CACAAATTCGTTCCCGTACCTATAT 59.013 40.000 0.00 0.00 35.01 0.86
712 1039 6.145048 CACAAATTCGTTCCCGTACCTATATC 59.855 42.308 0.00 0.00 35.01 1.63
713 1040 5.397142 AATTCGTTCCCGTACCTATATCC 57.603 43.478 0.00 0.00 35.01 2.59
714 1041 2.426522 TCGTTCCCGTACCTATATCCG 58.573 52.381 0.00 0.00 35.01 4.18
715 1042 1.135575 CGTTCCCGTACCTATATCCGC 60.136 57.143 0.00 0.00 0.00 5.54
716 1043 2.165998 GTTCCCGTACCTATATCCGCT 58.834 52.381 0.00 0.00 0.00 5.52
717 1044 2.119801 TCCCGTACCTATATCCGCTC 57.880 55.000 0.00 0.00 0.00 5.03
718 1045 1.632409 TCCCGTACCTATATCCGCTCT 59.368 52.381 0.00 0.00 0.00 4.09
719 1046 2.840038 TCCCGTACCTATATCCGCTCTA 59.160 50.000 0.00 0.00 0.00 2.43
720 1047 2.941720 CCCGTACCTATATCCGCTCTAC 59.058 54.545 0.00 0.00 0.00 2.59
721 1048 2.941720 CCGTACCTATATCCGCTCTACC 59.058 54.545 0.00 0.00 0.00 3.18
722 1049 2.941720 CGTACCTATATCCGCTCTACCC 59.058 54.545 0.00 0.00 0.00 3.69
723 1050 2.125773 ACCTATATCCGCTCTACCCG 57.874 55.000 0.00 0.00 0.00 5.28
724 1051 1.632409 ACCTATATCCGCTCTACCCGA 59.368 52.381 0.00 0.00 0.00 5.14
725 1052 2.015587 CCTATATCCGCTCTACCCGAC 58.984 57.143 0.00 0.00 0.00 4.79
726 1053 1.664659 CTATATCCGCTCTACCCGACG 59.335 57.143 0.00 0.00 0.00 5.12
727 1054 0.959372 ATATCCGCTCTACCCGACGG 60.959 60.000 6.99 6.99 46.97 4.79
741 1068 2.095110 CCCGACGGGTTTAATGTTTTCC 60.095 50.000 25.54 0.00 38.25 3.13
747 1074 7.148272 CCGACGGGTTTAATGTTTTCCTATTTA 60.148 37.037 5.81 0.00 0.00 1.40
748 1075 8.400186 CGACGGGTTTAATGTTTTCCTATTTAT 58.600 33.333 0.00 0.00 0.00 1.40
817 1144 4.029472 CCTGCAGGGTACGTAGGT 57.971 61.111 26.14 0.00 0.00 3.08
819 1146 1.477553 CCTGCAGGGTACGTAGGTTA 58.522 55.000 26.14 0.00 0.00 2.85
820 1147 2.037144 CCTGCAGGGTACGTAGGTTAT 58.963 52.381 26.14 0.00 0.00 1.89
821 1148 2.223971 CCTGCAGGGTACGTAGGTTATG 60.224 54.545 26.14 0.00 0.00 1.90
822 1149 1.758280 TGCAGGGTACGTAGGTTATGG 59.242 52.381 0.00 0.00 0.00 2.74
823 1150 1.069668 GCAGGGTACGTAGGTTATGGG 59.930 57.143 0.00 0.00 0.00 4.00
824 1151 2.391678 CAGGGTACGTAGGTTATGGGT 58.608 52.381 0.00 0.00 0.00 4.51
826 1153 3.571401 CAGGGTACGTAGGTTATGGGTAG 59.429 52.174 0.00 0.00 0.00 3.18
828 1155 2.958355 GGTACGTAGGTTATGGGTAGCA 59.042 50.000 0.00 0.00 33.21 3.49
830 1157 4.039609 GGTACGTAGGTTATGGGTAGCATT 59.960 45.833 0.00 0.00 33.21 3.56
832 1159 2.806244 CGTAGGTTATGGGTAGCATTGC 59.194 50.000 0.00 0.00 0.00 3.56
833 1160 2.364972 AGGTTATGGGTAGCATTGCC 57.635 50.000 4.70 0.00 0.00 4.52
834 1161 1.568597 AGGTTATGGGTAGCATTGCCA 59.431 47.619 4.70 0.00 0.00 4.92
835 1162 2.177669 AGGTTATGGGTAGCATTGCCAT 59.822 45.455 4.70 4.29 0.00 4.40
836 1163 2.558359 GGTTATGGGTAGCATTGCCATC 59.442 50.000 4.70 0.00 0.00 3.51
839 1166 1.288508 TGGGTAGCATTGCCATCCCT 61.289 55.000 24.01 3.68 35.45 4.20
840 1167 0.771127 GGGTAGCATTGCCATCCCTA 59.229 55.000 19.53 0.00 33.11 3.53
841 1168 1.271597 GGGTAGCATTGCCATCCCTAG 60.272 57.143 19.53 0.00 33.11 3.02
843 1170 2.307098 GGTAGCATTGCCATCCCTAGAT 59.693 50.000 4.70 0.00 0.00 1.98
844 1171 3.245052 GGTAGCATTGCCATCCCTAGATT 60.245 47.826 4.70 0.00 0.00 2.40
846 1173 2.444388 AGCATTGCCATCCCTAGATTCA 59.556 45.455 4.70 0.00 0.00 2.57
847 1174 3.117398 AGCATTGCCATCCCTAGATTCAA 60.117 43.478 4.70 0.00 31.06 2.69
848 1175 3.255149 GCATTGCCATCCCTAGATTCAAG 59.745 47.826 0.00 0.00 30.41 3.02
943 3606 2.099263 TGAACATACTACTGCCTCGCTC 59.901 50.000 0.00 0.00 0.00 5.03
981 3644 1.106944 CCAACACCACAACCCACTCC 61.107 60.000 0.00 0.00 0.00 3.85
1442 4297 1.001764 CATTCCAGGAGCAGCACCA 60.002 57.895 11.90 0.00 0.00 4.17
1527 4406 2.480416 GGACGACGAGCTCTTGATTGAT 60.480 50.000 12.85 0.00 0.00 2.57
1669 4555 2.089980 TGTGGAGCTACTAGTTCGACC 58.910 52.381 0.00 1.34 34.30 4.79
1845 5139 8.803235 ACTTGGGGTTCTTTCTTTATTCAATAC 58.197 33.333 0.00 0.00 0.00 1.89
1846 5140 8.950007 TTGGGGTTCTTTCTTTATTCAATACT 57.050 30.769 0.00 0.00 0.00 2.12
1847 5141 8.950007 TGGGGTTCTTTCTTTATTCAATACTT 57.050 30.769 0.00 0.00 0.00 2.24
1848 5142 9.374711 TGGGGTTCTTTCTTTATTCAATACTTT 57.625 29.630 0.00 0.00 0.00 2.66
1849 5143 9.856488 GGGGTTCTTTCTTTATTCAATACTTTC 57.144 33.333 0.00 0.00 0.00 2.62
1862 5156 8.854614 ATTCAATACTTTCTACTTCAAGCAGT 57.145 30.769 0.00 0.00 0.00 4.40
1863 5157 7.658179 TCAATACTTTCTACTTCAAGCAGTG 57.342 36.000 0.00 0.00 0.00 3.66
1864 5158 7.217200 TCAATACTTTCTACTTCAAGCAGTGT 58.783 34.615 0.00 0.00 0.00 3.55
1865 5159 8.364894 TCAATACTTTCTACTTCAAGCAGTGTA 58.635 33.333 0.00 0.00 0.00 2.90
1866 5160 8.988934 CAATACTTTCTACTTCAAGCAGTGTAA 58.011 33.333 0.00 0.00 0.00 2.41
1867 5161 9.555727 AATACTTTCTACTTCAAGCAGTGTAAA 57.444 29.630 0.00 0.00 0.00 2.01
1868 5162 7.859325 ACTTTCTACTTCAAGCAGTGTAAAA 57.141 32.000 0.00 0.00 0.00 1.52
1869 5163 8.451908 ACTTTCTACTTCAAGCAGTGTAAAAT 57.548 30.769 0.00 0.00 0.00 1.82
1870 5164 8.903820 ACTTTCTACTTCAAGCAGTGTAAAATT 58.096 29.630 0.00 0.00 0.00 1.82
1871 5165 9.736023 CTTTCTACTTCAAGCAGTGTAAAATTT 57.264 29.630 0.00 0.00 0.00 1.82
1877 5171 8.682710 ACTTCAAGCAGTGTAAAATTTTAGACA 58.317 29.630 29.39 17.96 38.83 3.41
1878 5172 9.173939 CTTCAAGCAGTGTAAAATTTTAGACAG 57.826 33.333 29.39 24.68 38.83 3.51
1879 5173 8.220755 TCAAGCAGTGTAAAATTTTAGACAGT 57.779 30.769 29.39 19.39 38.83 3.55
1880 5174 8.682710 TCAAGCAGTGTAAAATTTTAGACAGTT 58.317 29.630 29.39 21.00 38.83 3.16
1881 5175 8.745837 CAAGCAGTGTAAAATTTTAGACAGTTG 58.254 33.333 29.39 24.34 38.83 3.16
1882 5176 7.996385 AGCAGTGTAAAATTTTAGACAGTTGT 58.004 30.769 29.39 13.42 38.83 3.32
1883 5177 8.466798 AGCAGTGTAAAATTTTAGACAGTTGTT 58.533 29.630 29.39 18.76 38.83 2.83
1884 5178 8.531530 GCAGTGTAAAATTTTAGACAGTTGTTG 58.468 33.333 29.39 21.29 38.83 3.33
1885 5179 9.567848 CAGTGTAAAATTTTAGACAGTTGTTGT 57.432 29.630 29.39 11.74 44.55 3.32
1891 5185 7.875327 AATTTTAGACAGTTGTTGTACCAGT 57.125 32.000 0.00 0.00 41.05 4.00
1892 5186 8.967664 AATTTTAGACAGTTGTTGTACCAGTA 57.032 30.769 0.00 0.00 41.05 2.74
1893 5187 8.603242 ATTTTAGACAGTTGTTGTACCAGTAG 57.397 34.615 0.00 0.00 41.05 2.57
1894 5188 3.991367 AGACAGTTGTTGTACCAGTAGC 58.009 45.455 0.00 0.00 41.05 3.58
1895 5189 3.641906 AGACAGTTGTTGTACCAGTAGCT 59.358 43.478 0.00 0.00 41.05 3.32
1896 5190 4.831155 AGACAGTTGTTGTACCAGTAGCTA 59.169 41.667 0.00 0.00 41.05 3.32
1897 5191 5.047943 AGACAGTTGTTGTACCAGTAGCTAG 60.048 44.000 0.00 0.00 41.05 3.42
1898 5192 4.587684 ACAGTTGTTGTACCAGTAGCTAGT 59.412 41.667 0.00 0.00 38.56 2.57
1899 5193 4.923871 CAGTTGTTGTACCAGTAGCTAGTG 59.076 45.833 19.93 19.93 0.00 2.74
1900 5194 4.587684 AGTTGTTGTACCAGTAGCTAGTGT 59.412 41.667 23.78 15.41 0.00 3.55
1901 5195 5.771666 AGTTGTTGTACCAGTAGCTAGTGTA 59.228 40.000 23.78 14.57 0.00 2.90
1974 5268 4.520111 TGAGCAGTTGTAGTGCAATCATTT 59.480 37.500 8.99 0.00 46.65 2.32
2001 5304 3.623060 CACGGAGACCAACCAAATATCTG 59.377 47.826 0.00 0.00 0.00 2.90
2085 5388 1.261097 GCTCGACGCTACTCTGTTTC 58.739 55.000 0.00 0.00 35.14 2.78
2086 5389 1.897641 CTCGACGCTACTCTGTTTCC 58.102 55.000 0.00 0.00 0.00 3.13
2087 5390 0.167470 TCGACGCTACTCTGTTTCCG 59.833 55.000 0.00 0.00 0.00 4.30
2088 5391 0.167470 CGACGCTACTCTGTTTCCGA 59.833 55.000 0.00 0.00 0.00 4.55
2089 5392 1.615502 GACGCTACTCTGTTTCCGAC 58.384 55.000 0.00 0.00 0.00 4.79
2090 5393 0.243095 ACGCTACTCTGTTTCCGACC 59.757 55.000 0.00 0.00 0.00 4.79
2106 5747 0.808847 GACCGGACGGCCTAACAATC 60.809 60.000 9.46 0.00 39.32 2.67
2276 5917 4.439968 CCTCCGTCCCAAAATAAGTACTC 58.560 47.826 0.00 0.00 0.00 2.59
2282 5923 5.570034 CGTCCCAAAATAAGTACTCCCTTCA 60.570 44.000 0.00 0.00 0.00 3.02
2288 5929 8.705594 CCAAAATAAGTACTCCCTTCATCTAGA 58.294 37.037 0.00 0.00 0.00 2.43
2296 5937 9.747898 AGTACTCCCTTCATCTAGATGTATAAG 57.252 37.037 27.80 22.89 39.72 1.73
2297 5938 9.523168 GTACTCCCTTCATCTAGATGTATAAGT 57.477 37.037 27.80 24.24 39.72 2.24
2298 5939 8.644374 ACTCCCTTCATCTAGATGTATAAGTC 57.356 38.462 27.80 0.00 39.72 3.01
2299 5940 8.228206 ACTCCCTTCATCTAGATGTATAAGTCA 58.772 37.037 27.80 13.52 39.72 3.41
2300 5941 9.253832 CTCCCTTCATCTAGATGTATAAGTCAT 57.746 37.037 27.80 0.00 39.72 3.06
2301 5942 9.249053 TCCCTTCATCTAGATGTATAAGTCATC 57.751 37.037 27.80 0.00 41.11 2.92
2320 5961 2.793933 TCTTAGCTTGTACATCGCGAC 58.206 47.619 12.93 0.00 0.00 5.19
2325 5966 1.990799 CTTGTACATCGCGACCAAGA 58.009 50.000 24.05 6.51 35.64 3.02
2352 5993 8.082242 CGGAGTGGAAAATGAGAAAACTTAATT 58.918 33.333 0.00 0.00 0.00 1.40
2421 6062 5.068198 ACTGCATGTCATGTTTGAAAGTCTT 59.932 36.000 14.26 0.00 32.48 3.01
2424 6065 7.140705 TGCATGTCATGTTTGAAAGTCTTAAG 58.859 34.615 14.26 0.00 32.48 1.85
2441 6082 8.059798 AGTCTTAAGTCATTAAAAGCATGCAT 57.940 30.769 21.98 4.57 30.59 3.96
2450 6091 1.340088 AAAGCATGCATGACCCACAA 58.660 45.000 30.64 0.00 0.00 3.33
2480 6121 5.605564 TGGTTGATATGTCACGAAACAAG 57.394 39.130 0.00 0.00 33.11 3.16
2485 6126 6.852858 TGATATGTCACGAAACAAGAAACA 57.147 33.333 0.00 0.00 31.81 2.83
2486 6127 6.887368 TGATATGTCACGAAACAAGAAACAG 58.113 36.000 0.00 0.00 31.81 3.16
2487 6128 6.704050 TGATATGTCACGAAACAAGAAACAGA 59.296 34.615 0.00 0.00 31.81 3.41
2496 6140 6.766467 ACGAAACAAGAAACAGAGGAGTTAAT 59.234 34.615 0.00 0.00 0.00 1.40
2500 6144 9.574516 AAACAAGAAACAGAGGAGTTAATGTAT 57.425 29.630 0.00 0.00 0.00 2.29
2517 6161 4.377911 TGTATCGTGCGTAAGTGTTTTG 57.622 40.909 0.00 0.00 41.68 2.44
2523 6167 3.305110 GTGCGTAAGTGTTTTGGGATTG 58.695 45.455 0.00 0.00 41.68 2.67
2557 6201 6.074544 GTAAGATGACTTACGCACCTAGAT 57.925 41.667 0.00 0.00 45.47 1.98
2633 6277 5.302059 TGACAACATTTATTTTGGGACGGAA 59.698 36.000 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 0.466922 TACGGAGGCTACAGGGTAGC 60.467 60.000 17.71 17.71 39.70 3.58
10 11 1.955080 CTTACGGAGGCTACAGGGTAG 59.045 57.143 0.00 0.00 0.00 3.18
11 12 1.285962 ACTTACGGAGGCTACAGGGTA 59.714 52.381 0.00 0.00 0.00 3.69
12 13 0.040794 ACTTACGGAGGCTACAGGGT 59.959 55.000 0.00 0.00 0.00 4.34
13 14 2.062971 TACTTACGGAGGCTACAGGG 57.937 55.000 0.00 0.00 0.00 4.45
14 15 2.557490 GGATACTTACGGAGGCTACAGG 59.443 54.545 0.00 0.00 0.00 4.00
15 16 2.557490 GGGATACTTACGGAGGCTACAG 59.443 54.545 0.00 0.00 0.00 2.74
16 17 2.091720 TGGGATACTTACGGAGGCTACA 60.092 50.000 0.00 0.00 0.00 2.74
45 46 3.543680 CCACCAGTGGTAGATTGGTAG 57.456 52.381 16.22 0.00 42.70 3.18
61 62 1.228769 GGGTTTCCAGGGTTCCACC 60.229 63.158 0.00 0.00 37.60 4.61
92 100 2.222027 GAGCCCACATTTTAGATCCGG 58.778 52.381 0.00 0.00 0.00 5.14
100 108 3.173953 TCAATCAGGAGCCCACATTTT 57.826 42.857 0.00 0.00 0.00 1.82
152 160 6.096846 AGGCCTTGTGCAAAATTATAACTAGG 59.903 38.462 0.00 0.00 43.89 3.02
162 170 1.535204 CCCGAGGCCTTGTGCAAAAT 61.535 55.000 19.14 0.00 43.89 1.82
197 205 2.026356 TCATCCATCCACCATTTCGTGT 60.026 45.455 0.00 0.00 31.47 4.49
241 249 0.878961 AAACTTCACCGTGAGCCGTC 60.879 55.000 0.64 0.00 33.66 4.79
242 250 0.463116 AAAACTTCACCGTGAGCCGT 60.463 50.000 0.64 0.00 33.66 5.68
243 251 0.234884 GAAAACTTCACCGTGAGCCG 59.765 55.000 0.64 0.00 0.00 5.52
244 252 1.305201 TGAAAACTTCACCGTGAGCC 58.695 50.000 0.64 0.00 34.08 4.70
246 254 4.552166 AACATGAAAACTTCACCGTGAG 57.448 40.909 0.00 0.00 43.48 3.51
247 255 4.201970 GGAAACATGAAAACTTCACCGTGA 60.202 41.667 0.00 0.00 43.48 4.35
249 257 3.697045 TGGAAACATGAAAACTTCACCGT 59.303 39.130 0.00 0.00 43.48 4.83
250 258 4.041723 GTGGAAACATGAAAACTTCACCG 58.958 43.478 0.00 0.00 46.14 4.94
294 303 3.757270 ACCAAAACCGTGTCATCCATAA 58.243 40.909 0.00 0.00 0.00 1.90
297 306 2.496111 GTACCAAAACCGTGTCATCCA 58.504 47.619 0.00 0.00 0.00 3.41
298 307 1.461897 CGTACCAAAACCGTGTCATCC 59.538 52.381 0.00 0.00 0.00 3.51
299 308 1.461897 CCGTACCAAAACCGTGTCATC 59.538 52.381 0.00 0.00 0.00 2.92
300 309 1.515081 CCGTACCAAAACCGTGTCAT 58.485 50.000 0.00 0.00 0.00 3.06
301 310 0.532417 CCCGTACCAAAACCGTGTCA 60.532 55.000 0.00 0.00 0.00 3.58
302 311 0.532640 ACCCGTACCAAAACCGTGTC 60.533 55.000 0.00 0.00 0.00 3.67
303 312 0.814812 CACCCGTACCAAAACCGTGT 60.815 55.000 0.00 0.00 0.00 4.49
304 313 0.532417 TCACCCGTACCAAAACCGTG 60.532 55.000 0.00 0.00 0.00 4.94
305 314 0.179936 TTCACCCGTACCAAAACCGT 59.820 50.000 0.00 0.00 0.00 4.83
306 315 0.869730 CTTCACCCGTACCAAAACCG 59.130 55.000 0.00 0.00 0.00 4.44
309 318 0.183014 TGGCTTCACCCGTACCAAAA 59.817 50.000 0.00 0.00 37.83 2.44
311 320 1.071814 GTGGCTTCACCCGTACCAA 59.928 57.895 0.00 0.00 37.83 3.67
312 321 2.745037 GTGGCTTCACCCGTACCA 59.255 61.111 0.00 0.00 37.83 3.25
320 329 0.912486 AGGGTATGAGGTGGCTTCAC 59.088 55.000 0.00 0.00 40.52 3.18
322 331 2.158798 GGTAAGGGTATGAGGTGGCTTC 60.159 54.545 0.00 0.00 0.00 3.86
323 332 1.844497 GGTAAGGGTATGAGGTGGCTT 59.156 52.381 0.00 0.00 0.00 4.35
324 333 1.009675 AGGTAAGGGTATGAGGTGGCT 59.990 52.381 0.00 0.00 0.00 4.75
325 334 1.141053 CAGGTAAGGGTATGAGGTGGC 59.859 57.143 0.00 0.00 0.00 5.01
326 335 2.434702 GACAGGTAAGGGTATGAGGTGG 59.565 54.545 0.00 0.00 0.00 4.61
328 337 3.644335 GAGACAGGTAAGGGTATGAGGT 58.356 50.000 0.00 0.00 0.00 3.85
331 340 3.053842 AGACGAGACAGGTAAGGGTATGA 60.054 47.826 0.00 0.00 0.00 2.15
332 341 3.066900 CAGACGAGACAGGTAAGGGTATG 59.933 52.174 0.00 0.00 0.00 2.39
333 342 3.053842 TCAGACGAGACAGGTAAGGGTAT 60.054 47.826 0.00 0.00 0.00 2.73
335 344 1.075050 TCAGACGAGACAGGTAAGGGT 59.925 52.381 0.00 0.00 0.00 4.34
336 345 1.746220 CTCAGACGAGACAGGTAAGGG 59.254 57.143 0.00 0.00 42.34 3.95
338 347 2.088423 AGCTCAGACGAGACAGGTAAG 58.912 52.381 0.00 0.00 42.34 2.34
339 348 2.201921 AGCTCAGACGAGACAGGTAA 57.798 50.000 0.00 0.00 42.34 2.85
341 350 1.813786 GTAAGCTCAGACGAGACAGGT 59.186 52.381 0.00 0.00 42.34 4.00
342 351 1.133407 GGTAAGCTCAGACGAGACAGG 59.867 57.143 0.00 0.00 42.34 4.00
343 352 1.133407 GGGTAAGCTCAGACGAGACAG 59.867 57.143 0.00 0.00 42.34 3.51
346 355 2.145397 ATGGGTAAGCTCAGACGAGA 57.855 50.000 0.00 0.00 42.34 4.04
347 356 2.034812 GGTATGGGTAAGCTCAGACGAG 59.965 54.545 0.00 0.00 38.15 4.18
348 357 2.029623 GGTATGGGTAAGCTCAGACGA 58.970 52.381 0.00 0.00 38.15 4.20
349 358 1.068741 GGGTATGGGTAAGCTCAGACG 59.931 57.143 0.00 0.00 38.15 4.18
350 359 1.068741 CGGGTATGGGTAAGCTCAGAC 59.931 57.143 0.00 0.00 36.63 3.51
351 360 1.342674 ACGGGTATGGGTAAGCTCAGA 60.343 52.381 0.00 0.00 0.00 3.27
352 361 1.068741 GACGGGTATGGGTAAGCTCAG 59.931 57.143 0.00 0.00 0.00 3.35
353 362 1.117150 GACGGGTATGGGTAAGCTCA 58.883 55.000 0.00 0.00 0.00 4.26
354 363 0.031721 CGACGGGTATGGGTAAGCTC 59.968 60.000 0.00 0.00 0.00 4.09
355 364 0.396139 TCGACGGGTATGGGTAAGCT 60.396 55.000 0.00 0.00 0.00 3.74
356 365 0.677842 ATCGACGGGTATGGGTAAGC 59.322 55.000 0.00 0.00 0.00 3.09
357 366 1.000506 CCATCGACGGGTATGGGTAAG 59.999 57.143 6.22 0.00 39.23 2.34
358 367 1.042229 CCATCGACGGGTATGGGTAA 58.958 55.000 6.22 0.00 39.23 2.85
385 394 4.637387 TGGGTAACGGGTATGAGAAAAA 57.363 40.909 0.00 0.00 37.60 1.94
390 399 2.901249 CTGTTGGGTAACGGGTATGAG 58.099 52.381 0.00 0.00 39.11 2.90
404 413 1.489230 GGTACCCATCTACCCTGTTGG 59.511 57.143 0.00 0.00 41.37 3.77
423 432 4.274978 ACATAGGAAATTTTACCCGTGGG 58.725 43.478 2.58 2.58 42.03 4.61
424 433 5.907866 AACATAGGAAATTTTACCCGTGG 57.092 39.130 0.00 0.00 0.00 4.94
425 434 5.575218 GCAAACATAGGAAATTTTACCCGTG 59.425 40.000 0.00 0.00 0.00 4.94
426 435 5.244178 TGCAAACATAGGAAATTTTACCCGT 59.756 36.000 0.00 0.00 0.00 5.28
427 436 5.715070 TGCAAACATAGGAAATTTTACCCG 58.285 37.500 0.00 0.00 0.00 5.28
428 437 7.094975 GGTTTGCAAACATAGGAAATTTTACCC 60.095 37.037 35.95 14.54 40.63 3.69
429 438 7.442666 TGGTTTGCAAACATAGGAAATTTTACC 59.557 33.333 35.95 18.83 40.63 2.85
434 700 6.767456 TGATGGTTTGCAAACATAGGAAATT 58.233 32.000 35.95 13.80 40.63 1.82
440 706 7.655236 TCAAATTGATGGTTTGCAAACATAG 57.345 32.000 35.95 19.32 40.63 2.23
441 707 8.618702 ATTCAAATTGATGGTTTGCAAACATA 57.381 26.923 35.95 26.47 40.63 2.29
445 711 8.674263 AGTTATTCAAATTGATGGTTTGCAAA 57.326 26.923 8.05 8.05 36.69 3.68
447 713 7.440198 TGAGTTATTCAAATTGATGGTTTGCA 58.560 30.769 0.00 0.00 36.69 4.08
463 729 9.737025 GTTGTTGTTTACGACTATGAGTTATTC 57.263 33.333 0.00 0.00 38.02 1.75
465 731 8.821147 TGTTGTTGTTTACGACTATGAGTTAT 57.179 30.769 0.00 0.00 41.11 1.89
466 732 8.821147 ATGTTGTTGTTTACGACTATGAGTTA 57.179 30.769 0.00 0.00 41.11 2.24
542 869 6.379386 TGTTTTGATGTGTTGTCGTTTACAA 58.621 32.000 0.00 0.00 45.90 2.41
543 870 5.939457 TGTTTTGATGTGTTGTCGTTTACA 58.061 33.333 0.00 0.00 35.88 2.41
544 871 8.549777 TTATGTTTTGATGTGTTGTCGTTTAC 57.450 30.769 0.00 0.00 0.00 2.01
545 872 9.388346 GATTATGTTTTGATGTGTTGTCGTTTA 57.612 29.630 0.00 0.00 0.00 2.01
547 874 6.861055 GGATTATGTTTTGATGTGTTGTCGTT 59.139 34.615 0.00 0.00 0.00 3.85
548 875 6.378582 GGATTATGTTTTGATGTGTTGTCGT 58.621 36.000 0.00 0.00 0.00 4.34
549 876 5.799936 GGGATTATGTTTTGATGTGTTGTCG 59.200 40.000 0.00 0.00 0.00 4.35
552 879 8.469200 AGTATGGGATTATGTTTTGATGTGTTG 58.531 33.333 0.00 0.00 0.00 3.33
553 880 8.593945 AGTATGGGATTATGTTTTGATGTGTT 57.406 30.769 0.00 0.00 0.00 3.32
554 881 7.012327 CGAGTATGGGATTATGTTTTGATGTGT 59.988 37.037 0.00 0.00 0.00 3.72
555 882 7.012327 ACGAGTATGGGATTATGTTTTGATGTG 59.988 37.037 0.00 0.00 0.00 3.21
556 883 7.054124 ACGAGTATGGGATTATGTTTTGATGT 58.946 34.615 0.00 0.00 0.00 3.06
557 884 7.496529 ACGAGTATGGGATTATGTTTTGATG 57.503 36.000 0.00 0.00 0.00 3.07
558 885 8.208224 TGTACGAGTATGGGATTATGTTTTGAT 58.792 33.333 0.00 0.00 0.00 2.57
560 887 7.780008 TGTACGAGTATGGGATTATGTTTTG 57.220 36.000 0.00 0.00 0.00 2.44
562 889 8.974060 AAATGTACGAGTATGGGATTATGTTT 57.026 30.769 0.00 0.00 0.00 2.83
563 890 8.974060 AAAATGTACGAGTATGGGATTATGTT 57.026 30.769 0.00 0.00 0.00 2.71
564 891 8.974060 AAAAATGTACGAGTATGGGATTATGT 57.026 30.769 0.00 0.00 0.00 2.29
568 895 9.106070 GAACTAAAAATGTACGAGTATGGGATT 57.894 33.333 0.00 0.00 0.00 3.01
569 896 8.262227 TGAACTAAAAATGTACGAGTATGGGAT 58.738 33.333 0.00 0.00 0.00 3.85
571 898 7.332430 TGTGAACTAAAAATGTACGAGTATGGG 59.668 37.037 0.00 0.00 0.00 4.00
572 899 8.246908 TGTGAACTAAAAATGTACGAGTATGG 57.753 34.615 0.00 0.00 0.00 2.74
576 903 9.659830 GAATTTGTGAACTAAAAATGTACGAGT 57.340 29.630 0.00 0.00 0.00 4.18
577 904 9.658475 TGAATTTGTGAACTAAAAATGTACGAG 57.342 29.630 0.00 0.00 0.00 4.18
582 909 9.814899 TGTCATGAATTTGTGAACTAAAAATGT 57.185 25.926 0.00 0.00 0.00 2.71
586 913 9.868277 ACTTTGTCATGAATTTGTGAACTAAAA 57.132 25.926 0.00 0.00 0.00 1.52
587 914 9.299963 CACTTTGTCATGAATTTGTGAACTAAA 57.700 29.630 0.00 0.00 0.00 1.85
588 915 8.681806 TCACTTTGTCATGAATTTGTGAACTAA 58.318 29.630 15.72 0.00 31.49 2.24
589 916 8.219546 TCACTTTGTCATGAATTTGTGAACTA 57.780 30.769 15.72 0.44 31.49 2.24
590 917 7.099266 TCACTTTGTCATGAATTTGTGAACT 57.901 32.000 15.72 0.00 31.49 3.01
591 918 7.701924 TCTTCACTTTGTCATGAATTTGTGAAC 59.298 33.333 21.27 1.37 37.97 3.18
592 919 7.770201 TCTTCACTTTGTCATGAATTTGTGAA 58.230 30.769 22.55 22.55 39.73 3.18
593 920 7.282901 TCTCTTCACTTTGTCATGAATTTGTGA 59.717 33.333 14.69 14.69 34.43 3.58
594 921 7.420002 TCTCTTCACTTTGTCATGAATTTGTG 58.580 34.615 0.00 5.46 34.43 3.33
595 922 7.572523 TCTCTTCACTTTGTCATGAATTTGT 57.427 32.000 0.00 0.00 34.43 2.83
604 931 9.342308 ACTCAAAATTATCTCTTCACTTTGTCA 57.658 29.630 0.00 0.00 0.00 3.58
637 964 9.720874 ACATACCCATGTACTCATATCATATCT 57.279 33.333 0.00 0.00 43.74 1.98
638 965 9.755804 CACATACCCATGTACTCATATCATATC 57.244 37.037 0.00 0.00 43.73 1.63
639 966 8.708378 CCACATACCCATGTACTCATATCATAT 58.292 37.037 0.00 0.00 43.73 1.78
640 967 7.125659 CCCACATACCCATGTACTCATATCATA 59.874 40.741 0.00 0.00 43.73 2.15
641 968 6.070021 CCCACATACCCATGTACTCATATCAT 60.070 42.308 0.00 0.00 43.73 2.45
642 969 5.248248 CCCACATACCCATGTACTCATATCA 59.752 44.000 0.00 0.00 43.73 2.15
643 970 5.248477 ACCCACATACCCATGTACTCATATC 59.752 44.000 0.00 0.00 43.73 1.63
644 971 5.013079 CACCCACATACCCATGTACTCATAT 59.987 44.000 0.00 0.00 43.73 1.78
645 972 4.346709 CACCCACATACCCATGTACTCATA 59.653 45.833 0.00 0.00 43.73 2.15
646 973 3.136443 CACCCACATACCCATGTACTCAT 59.864 47.826 0.00 0.00 43.73 2.90
647 974 2.503765 CACCCACATACCCATGTACTCA 59.496 50.000 0.00 0.00 43.73 3.41
648 975 2.504175 ACACCCACATACCCATGTACTC 59.496 50.000 0.00 0.00 43.73 2.59
649 976 2.238646 CACACCCACATACCCATGTACT 59.761 50.000 0.00 0.00 43.73 2.73
650 977 2.639065 CACACCCACATACCCATGTAC 58.361 52.381 0.00 0.00 43.73 2.90
651 978 1.562008 CCACACCCACATACCCATGTA 59.438 52.381 0.00 0.00 43.73 2.29
652 979 0.331278 CCACACCCACATACCCATGT 59.669 55.000 0.00 0.00 46.58 3.21
653 980 0.395586 CCCACACCCACATACCCATG 60.396 60.000 0.00 0.00 38.21 3.66
654 981 0.849094 ACCCACACCCACATACCCAT 60.849 55.000 0.00 0.00 0.00 4.00
655 982 1.464395 ACCCACACCCACATACCCA 60.464 57.895 0.00 0.00 0.00 4.51
656 983 1.001393 CACCCACACCCACATACCC 60.001 63.158 0.00 0.00 0.00 3.69
657 984 0.608035 CACACCCACACCCACATACC 60.608 60.000 0.00 0.00 0.00 2.73
658 985 0.608035 CCACACCCACACCCACATAC 60.608 60.000 0.00 0.00 0.00 2.39
659 986 1.764422 CCACACCCACACCCACATA 59.236 57.895 0.00 0.00 0.00 2.29
660 987 2.520458 CCACACCCACACCCACAT 59.480 61.111 0.00 0.00 0.00 3.21
661 988 3.814906 CCCACACCCACACCCACA 61.815 66.667 0.00 0.00 0.00 4.17
662 989 1.997256 TAACCCACACCCACACCCAC 61.997 60.000 0.00 0.00 0.00 4.61
663 990 1.068943 ATAACCCACACCCACACCCA 61.069 55.000 0.00 0.00 0.00 4.51
664 991 0.113580 AATAACCCACACCCACACCC 59.886 55.000 0.00 0.00 0.00 4.61
665 992 1.202952 TGAATAACCCACACCCACACC 60.203 52.381 0.00 0.00 0.00 4.16
666 993 2.279935 TGAATAACCCACACCCACAC 57.720 50.000 0.00 0.00 0.00 3.82
667 994 2.376855 TGATGAATAACCCACACCCACA 59.623 45.455 0.00 0.00 0.00 4.17
668 995 2.752903 GTGATGAATAACCCACACCCAC 59.247 50.000 0.00 0.00 0.00 4.61
669 996 2.376855 TGTGATGAATAACCCACACCCA 59.623 45.455 0.00 0.00 34.96 4.51
670 997 3.080300 TGTGATGAATAACCCACACCC 57.920 47.619 0.00 0.00 34.96 4.61
671 998 5.659440 ATTTGTGATGAATAACCCACACC 57.341 39.130 0.00 0.00 38.99 4.16
672 999 5.799936 CGAATTTGTGATGAATAACCCACAC 59.200 40.000 0.00 0.00 38.99 3.82
673 1000 5.475220 ACGAATTTGTGATGAATAACCCACA 59.525 36.000 0.00 0.00 37.70 4.17
674 1001 5.949735 ACGAATTTGTGATGAATAACCCAC 58.050 37.500 0.00 0.00 0.00 4.61
675 1002 6.349777 GGAACGAATTTGTGATGAATAACCCA 60.350 38.462 0.00 0.00 0.00 4.51
676 1003 6.033966 GGAACGAATTTGTGATGAATAACCC 58.966 40.000 0.00 0.00 0.00 4.11
677 1004 6.033966 GGGAACGAATTTGTGATGAATAACC 58.966 40.000 0.00 0.00 0.00 2.85
696 1023 2.163211 GAGCGGATATAGGTACGGGAAC 59.837 54.545 0.00 0.00 0.00 3.62
697 1024 2.040813 AGAGCGGATATAGGTACGGGAA 59.959 50.000 0.00 0.00 0.00 3.97
698 1025 1.632409 AGAGCGGATATAGGTACGGGA 59.368 52.381 0.00 0.00 0.00 5.14
699 1026 2.125773 AGAGCGGATATAGGTACGGG 57.874 55.000 0.00 0.00 0.00 5.28
700 1027 2.941720 GGTAGAGCGGATATAGGTACGG 59.058 54.545 0.00 0.00 0.00 4.02
701 1028 2.941720 GGGTAGAGCGGATATAGGTACG 59.058 54.545 0.00 0.00 0.00 3.67
702 1029 2.941720 CGGGTAGAGCGGATATAGGTAC 59.058 54.545 0.00 0.00 0.00 3.34
703 1030 2.840038 TCGGGTAGAGCGGATATAGGTA 59.160 50.000 0.00 0.00 0.00 3.08
704 1031 1.632409 TCGGGTAGAGCGGATATAGGT 59.368 52.381 0.00 0.00 0.00 3.08
705 1032 2.015587 GTCGGGTAGAGCGGATATAGG 58.984 57.143 0.00 0.00 0.00 2.57
706 1033 1.664659 CGTCGGGTAGAGCGGATATAG 59.335 57.143 0.00 0.00 0.00 1.31
707 1034 1.676916 CCGTCGGGTAGAGCGGATATA 60.677 57.143 2.34 0.00 42.23 0.86
708 1035 0.959372 CCGTCGGGTAGAGCGGATAT 60.959 60.000 2.34 0.00 42.23 1.63
709 1036 1.598962 CCGTCGGGTAGAGCGGATA 60.599 63.158 2.34 0.00 42.23 2.59
710 1037 2.905880 CCGTCGGGTAGAGCGGAT 60.906 66.667 2.34 0.00 42.23 4.18
721 1048 2.815503 AGGAAAACATTAAACCCGTCGG 59.184 45.455 3.60 3.60 0.00 4.79
722 1049 5.806366 ATAGGAAAACATTAAACCCGTCG 57.194 39.130 0.00 0.00 0.00 5.12
800 1127 1.477553 TAACCTACGTACCCTGCAGG 58.522 55.000 26.87 26.87 43.78 4.85
801 1128 2.223971 CCATAACCTACGTACCCTGCAG 60.224 54.545 6.78 6.78 0.00 4.41
802 1129 1.758280 CCATAACCTACGTACCCTGCA 59.242 52.381 0.00 0.00 0.00 4.41
803 1130 1.069668 CCCATAACCTACGTACCCTGC 59.930 57.143 0.00 0.00 0.00 4.85
804 1131 2.391678 ACCCATAACCTACGTACCCTG 58.608 52.381 0.00 0.00 0.00 4.45
805 1132 2.854736 ACCCATAACCTACGTACCCT 57.145 50.000 0.00 0.00 0.00 4.34
806 1133 2.297315 GCTACCCATAACCTACGTACCC 59.703 54.545 0.00 0.00 0.00 3.69
807 1134 2.958355 TGCTACCCATAACCTACGTACC 59.042 50.000 0.00 0.00 0.00 3.34
808 1135 4.861102 ATGCTACCCATAACCTACGTAC 57.139 45.455 0.00 0.00 30.69 3.67
809 1136 4.501915 GCAATGCTACCCATAACCTACGTA 60.502 45.833 0.00 0.00 32.67 3.57
811 1138 2.806244 GCAATGCTACCCATAACCTACG 59.194 50.000 0.00 0.00 32.67 3.51
812 1139 3.146847 GGCAATGCTACCCATAACCTAC 58.853 50.000 4.82 0.00 32.67 3.18
813 1140 2.780592 TGGCAATGCTACCCATAACCTA 59.219 45.455 4.82 0.00 32.74 3.08
814 1141 1.568597 TGGCAATGCTACCCATAACCT 59.431 47.619 4.82 0.00 32.74 3.50
815 1142 2.065899 TGGCAATGCTACCCATAACC 57.934 50.000 4.82 0.00 32.67 2.85
817 1144 2.490718 GGGATGGCAATGCTACCCATAA 60.491 50.000 21.86 0.00 39.36 1.90
819 1146 0.178953 GGGATGGCAATGCTACCCAT 60.179 55.000 21.86 11.04 41.83 4.00
820 1147 1.229927 GGGATGGCAATGCTACCCA 59.770 57.895 21.86 7.10 36.14 4.51
821 1148 0.771127 TAGGGATGGCAATGCTACCC 59.229 55.000 20.25 20.25 36.25 3.69
822 1149 1.699634 TCTAGGGATGGCAATGCTACC 59.300 52.381 4.82 6.28 0.00 3.18
823 1150 3.710209 ATCTAGGGATGGCAATGCTAC 57.290 47.619 4.82 0.00 0.00 3.58
824 1151 3.652387 TGAATCTAGGGATGGCAATGCTA 59.348 43.478 4.82 0.00 31.75 3.49
826 1153 2.867624 TGAATCTAGGGATGGCAATGC 58.132 47.619 0.00 0.00 31.75 3.56
828 1155 4.803329 ACTTGAATCTAGGGATGGCAAT 57.197 40.909 0.00 0.00 31.46 3.56
830 1157 5.912149 ATAACTTGAATCTAGGGATGGCA 57.088 39.130 0.00 0.00 31.75 4.92
834 1161 9.756571 ACGTATCTATAACTTGAATCTAGGGAT 57.243 33.333 0.00 0.00 0.00 3.85
835 1162 9.011095 CACGTATCTATAACTTGAATCTAGGGA 57.989 37.037 0.00 0.00 0.00 4.20
836 1163 7.755822 GCACGTATCTATAACTTGAATCTAGGG 59.244 40.741 0.00 0.00 0.00 3.53
839 1166 8.173542 TGGCACGTATCTATAACTTGAATCTA 57.826 34.615 0.00 0.00 0.00 1.98
840 1167 7.050970 TGGCACGTATCTATAACTTGAATCT 57.949 36.000 0.00 0.00 0.00 2.40
841 1168 7.063544 GGATGGCACGTATCTATAACTTGAATC 59.936 40.741 0.00 0.00 0.00 2.52
843 1170 6.041637 AGGATGGCACGTATCTATAACTTGAA 59.958 38.462 0.00 0.00 0.00 2.69
844 1171 5.538813 AGGATGGCACGTATCTATAACTTGA 59.461 40.000 0.00 0.00 0.00 3.02
846 1173 5.047235 GGAGGATGGCACGTATCTATAACTT 60.047 44.000 0.00 0.00 0.00 2.66
847 1174 4.463186 GGAGGATGGCACGTATCTATAACT 59.537 45.833 0.00 0.00 0.00 2.24
848 1175 4.463186 AGGAGGATGGCACGTATCTATAAC 59.537 45.833 0.00 0.00 0.00 1.89
922 3585 2.099263 GAGCGAGGCAGTAGTATGTTCA 59.901 50.000 0.00 0.00 0.00 3.18
960 3623 0.040499 AGTGGGTTGTGGTGTTGGTT 59.960 50.000 0.00 0.00 0.00 3.67
962 3625 1.106944 GGAGTGGGTTGTGGTGTTGG 61.107 60.000 0.00 0.00 0.00 3.77
1022 3685 0.251077 CTCTTGCCCCTCAAACTGCT 60.251 55.000 0.00 0.00 33.65 4.24
1613 4495 3.474230 AAGCCGTCGTCGTGTTCGT 62.474 57.895 0.71 0.00 38.33 3.85
1669 4555 8.015087 TGTCTAAAAATTTACACTGCTTGATCG 58.985 33.333 0.00 0.00 0.00 3.69
1845 5139 9.736023 AAATTTTACACTGCTTGAAGTAGAAAG 57.264 29.630 17.16 8.57 32.00 2.62
1851 5145 8.682710 TGTCTAAAATTTTACACTGCTTGAAGT 58.317 29.630 14.81 0.00 0.00 3.01
1852 5146 9.173939 CTGTCTAAAATTTTACACTGCTTGAAG 57.826 33.333 14.81 0.00 0.00 3.02
1853 5147 8.682710 ACTGTCTAAAATTTTACACTGCTTGAA 58.317 29.630 17.26 0.00 0.00 2.69
1854 5148 8.220755 ACTGTCTAAAATTTTACACTGCTTGA 57.779 30.769 17.26 5.92 0.00 3.02
1855 5149 8.745837 CAACTGTCTAAAATTTTACACTGCTTG 58.254 33.333 17.26 15.93 0.00 4.01
1856 5150 8.466798 ACAACTGTCTAAAATTTTACACTGCTT 58.533 29.630 17.26 11.07 0.00 3.91
1857 5151 7.996385 ACAACTGTCTAAAATTTTACACTGCT 58.004 30.769 17.26 7.73 0.00 4.24
1858 5152 8.531530 CAACAACTGTCTAAAATTTTACACTGC 58.468 33.333 17.26 5.09 0.00 4.40
1859 5153 9.567848 ACAACAACTGTCTAAAATTTTACACTG 57.432 29.630 16.33 16.33 29.87 3.66
1865 5159 8.745590 ACTGGTACAACAACTGTCTAAAATTTT 58.254 29.630 8.75 8.75 38.70 1.82
1866 5160 8.288689 ACTGGTACAACAACTGTCTAAAATTT 57.711 30.769 0.00 0.00 38.70 1.82
1867 5161 7.875327 ACTGGTACAACAACTGTCTAAAATT 57.125 32.000 0.00 0.00 38.70 1.82
1868 5162 7.172703 GCTACTGGTACAACAACTGTCTAAAAT 59.827 37.037 0.00 0.00 38.70 1.82
1869 5163 6.480981 GCTACTGGTACAACAACTGTCTAAAA 59.519 38.462 0.00 0.00 38.70 1.52
1870 5164 5.987347 GCTACTGGTACAACAACTGTCTAAA 59.013 40.000 0.00 0.00 38.70 1.85
1871 5165 5.303589 AGCTACTGGTACAACAACTGTCTAA 59.696 40.000 0.00 0.00 38.70 2.10
1872 5166 4.831155 AGCTACTGGTACAACAACTGTCTA 59.169 41.667 0.00 0.00 38.70 2.59
1873 5167 3.641906 AGCTACTGGTACAACAACTGTCT 59.358 43.478 0.00 0.00 38.70 3.41
1874 5168 3.991367 AGCTACTGGTACAACAACTGTC 58.009 45.455 0.00 0.00 38.70 3.51
1875 5169 4.587684 ACTAGCTACTGGTACAACAACTGT 59.412 41.667 0.00 0.00 38.70 3.55
1876 5170 4.923871 CACTAGCTACTGGTACAACAACTG 59.076 45.833 0.00 0.00 38.70 3.16
1877 5171 4.587684 ACACTAGCTACTGGTACAACAACT 59.412 41.667 5.52 0.00 38.70 3.16
1878 5172 4.879598 ACACTAGCTACTGGTACAACAAC 58.120 43.478 5.52 0.00 38.70 3.32
1879 5173 6.653526 TTACACTAGCTACTGGTACAACAA 57.346 37.500 5.52 0.00 38.70 2.83
1880 5174 6.434965 TCATTACACTAGCTACTGGTACAACA 59.565 38.462 5.52 0.00 38.70 3.33
1881 5175 6.860080 TCATTACACTAGCTACTGGTACAAC 58.140 40.000 5.52 0.00 38.70 3.32
1882 5176 6.096423 CCTCATTACACTAGCTACTGGTACAA 59.904 42.308 5.52 0.00 38.70 2.41
1883 5177 5.593095 CCTCATTACACTAGCTACTGGTACA 59.407 44.000 5.52 0.00 0.00 2.90
1884 5178 5.826737 TCCTCATTACACTAGCTACTGGTAC 59.173 44.000 5.52 0.00 0.00 3.34
1885 5179 6.009908 TCCTCATTACACTAGCTACTGGTA 57.990 41.667 5.52 0.00 0.00 3.25
1886 5180 4.868268 TCCTCATTACACTAGCTACTGGT 58.132 43.478 5.52 0.00 0.00 4.00
1887 5181 5.854010 TTCCTCATTACACTAGCTACTGG 57.146 43.478 5.52 0.00 0.00 4.00
1888 5182 6.703607 CCATTTCCTCATTACACTAGCTACTG 59.296 42.308 0.00 0.00 0.00 2.74
1889 5183 6.183361 CCCATTTCCTCATTACACTAGCTACT 60.183 42.308 0.00 0.00 0.00 2.57
1890 5184 5.992217 CCCATTTCCTCATTACACTAGCTAC 59.008 44.000 0.00 0.00 0.00 3.58
1891 5185 5.454755 GCCCATTTCCTCATTACACTAGCTA 60.455 44.000 0.00 0.00 0.00 3.32
1892 5186 4.687219 GCCCATTTCCTCATTACACTAGCT 60.687 45.833 0.00 0.00 0.00 3.32
1893 5187 3.565902 GCCCATTTCCTCATTACACTAGC 59.434 47.826 0.00 0.00 0.00 3.42
1894 5188 4.780815 TGCCCATTTCCTCATTACACTAG 58.219 43.478 0.00 0.00 0.00 2.57
1895 5189 4.473196 TCTGCCCATTTCCTCATTACACTA 59.527 41.667 0.00 0.00 0.00 2.74
1896 5190 3.266772 TCTGCCCATTTCCTCATTACACT 59.733 43.478 0.00 0.00 0.00 3.55
1897 5191 3.620488 TCTGCCCATTTCCTCATTACAC 58.380 45.455 0.00 0.00 0.00 2.90
1898 5192 4.524802 ATCTGCCCATTTCCTCATTACA 57.475 40.909 0.00 0.00 0.00 2.41
1899 5193 7.530426 AAATATCTGCCCATTTCCTCATTAC 57.470 36.000 0.00 0.00 0.00 1.89
1900 5194 9.827198 ATAAAATATCTGCCCATTTCCTCATTA 57.173 29.630 0.00 0.00 0.00 1.90
1901 5195 8.731591 ATAAAATATCTGCCCATTTCCTCATT 57.268 30.769 0.00 0.00 0.00 2.57
1974 5268 2.741092 GTTGGTCTCCGTGGAGCA 59.259 61.111 11.17 1.71 41.71 4.26
1981 5275 3.206150 CCAGATATTTGGTTGGTCTCCG 58.794 50.000 4.06 0.00 33.38 4.63
2001 5304 1.989706 TACCTTGGTTTCTGTTGCCC 58.010 50.000 0.00 0.00 0.00 5.36
2086 5389 2.567564 ATTGTTAGGCCGTCCGGTCG 62.568 60.000 14.43 14.43 46.16 4.79
2087 5390 0.808847 GATTGTTAGGCCGTCCGGTC 60.809 60.000 1.21 1.21 40.91 4.79
2088 5391 1.219935 GATTGTTAGGCCGTCCGGT 59.780 57.895 7.66 0.00 37.47 5.28
2089 5392 0.810031 CAGATTGTTAGGCCGTCCGG 60.810 60.000 0.24 0.24 37.47 5.14
2090 5393 0.174845 TCAGATTGTTAGGCCGTCCG 59.825 55.000 0.00 0.00 37.47 4.79
2292 5933 6.642950 GCGATGTACAAGCTAAGATGACTTAT 59.357 38.462 16.46 0.00 37.85 1.73
2293 5934 5.977725 GCGATGTACAAGCTAAGATGACTTA 59.022 40.000 16.46 0.00 37.53 2.24
2294 5935 4.806247 GCGATGTACAAGCTAAGATGACTT 59.194 41.667 16.46 0.00 39.81 3.01
2295 5936 4.363999 GCGATGTACAAGCTAAGATGACT 58.636 43.478 16.46 0.00 0.00 3.41
2296 5937 3.180584 CGCGATGTACAAGCTAAGATGAC 59.819 47.826 19.81 0.00 0.00 3.06
2297 5938 3.066203 TCGCGATGTACAAGCTAAGATGA 59.934 43.478 19.81 9.28 0.00 2.92
2298 5939 3.180584 GTCGCGATGTACAAGCTAAGATG 59.819 47.826 14.06 7.54 0.00 2.90
2299 5940 3.372954 GTCGCGATGTACAAGCTAAGAT 58.627 45.455 14.06 0.00 0.00 2.40
2300 5941 2.479049 GGTCGCGATGTACAAGCTAAGA 60.479 50.000 14.06 10.38 0.00 2.10
2301 5942 1.852895 GGTCGCGATGTACAAGCTAAG 59.147 52.381 14.06 8.65 0.00 2.18
2302 5943 1.202817 TGGTCGCGATGTACAAGCTAA 59.797 47.619 14.06 8.94 0.00 3.09
2303 5944 0.812549 TGGTCGCGATGTACAAGCTA 59.187 50.000 14.06 10.00 0.00 3.32
2304 5945 0.037697 TTGGTCGCGATGTACAAGCT 60.038 50.000 14.06 0.00 0.00 3.74
2305 5946 0.370273 CTTGGTCGCGATGTACAAGC 59.630 55.000 22.97 14.45 33.12 4.01
2306 5947 1.654105 GTCTTGGTCGCGATGTACAAG 59.346 52.381 25.98 25.98 39.76 3.16
2307 5948 1.705256 GTCTTGGTCGCGATGTACAA 58.295 50.000 14.06 14.40 0.00 2.41
2308 5949 0.455464 CGTCTTGGTCGCGATGTACA 60.455 55.000 14.06 6.89 0.00 2.90
2309 5950 1.138047 CCGTCTTGGTCGCGATGTAC 61.138 60.000 14.06 6.03 0.00 2.90
2310 5951 1.138036 CCGTCTTGGTCGCGATGTA 59.862 57.895 14.06 0.00 0.00 2.29
2311 5952 2.126071 CCGTCTTGGTCGCGATGT 60.126 61.111 14.06 0.00 0.00 3.06
2320 5961 2.744202 CTCATTTTCCACTCCGTCTTGG 59.256 50.000 0.00 0.00 40.09 3.61
2325 5966 4.461198 AGTTTTCTCATTTTCCACTCCGT 58.539 39.130 0.00 0.00 0.00 4.69
2401 6042 8.344831 TGACTTAAGACTTTCAAACATGACATG 58.655 33.333 14.02 14.02 0.00 3.21
2421 6062 6.405731 GGGTCATGCATGCTTTTAATGACTTA 60.406 38.462 30.99 7.75 44.17 2.24
2424 6065 4.114794 GGGTCATGCATGCTTTTAATGAC 58.885 43.478 27.56 27.56 44.06 3.06
2430 6071 1.340088 TGTGGGTCATGCATGCTTTT 58.660 45.000 22.25 0.46 0.00 2.27
2441 6082 4.141287 CAACCAATAAGAGTTGTGGGTCA 58.859 43.478 0.00 0.00 38.81 4.02
2450 6091 6.873997 TCGTGACATATCAACCAATAAGAGT 58.126 36.000 0.00 0.00 36.31 3.24
2480 6121 6.237861 GCACGATACATTAACTCCTCTGTTTC 60.238 42.308 0.00 0.00 0.00 2.78
2485 6126 3.380637 ACGCACGATACATTAACTCCTCT 59.619 43.478 0.00 0.00 0.00 3.69
2486 6127 3.703420 ACGCACGATACATTAACTCCTC 58.297 45.455 0.00 0.00 0.00 3.71
2487 6128 3.795623 ACGCACGATACATTAACTCCT 57.204 42.857 0.00 0.00 0.00 3.69
2496 6140 3.184783 CCAAAACACTTACGCACGATACA 59.815 43.478 0.00 0.00 0.00 2.29
2500 6144 0.938713 CCCAAAACACTTACGCACGA 59.061 50.000 0.00 0.00 0.00 4.35
2517 6161 5.441709 TCTTACGAAAACCAAACAATCCC 57.558 39.130 0.00 0.00 0.00 3.85
2557 6201 4.624913 ACAAAGATGAGATACTCCCTCCA 58.375 43.478 0.00 0.00 0.00 3.86
2600 6244 9.607285 CCAAAATAAATGTTGTCACTGTAGTAC 57.393 33.333 0.00 0.00 0.00 2.73
2610 6254 5.379732 TCCGTCCCAAAATAAATGTTGTC 57.620 39.130 0.00 0.00 0.00 3.18
2611 6255 5.279256 CCTTCCGTCCCAAAATAAATGTTGT 60.279 40.000 0.00 0.00 0.00 3.32
2617 6261 4.376225 ACTCCTTCCGTCCCAAAATAAA 57.624 40.909 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.