Multiple sequence alignment - TraesCS5A01G310300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G310300 chr5A 100.000 2396 0 0 1 2396 522112834 522110439 0.000000e+00 4425
1 TraesCS5A01G310300 chr4B 98.631 1753 19 4 647 2396 618614002 618615752 0.000000e+00 3099
2 TraesCS5A01G310300 chr7A 90.541 1459 111 12 947 2391 44449189 44450634 0.000000e+00 1905
3 TraesCS5A01G310300 chr7A 88.820 161 12 2 647 801 44448471 44448631 2.430000e-45 193
4 TraesCS5A01G310300 chr3B 97.665 985 19 2 1416 2396 525237489 525238473 0.000000e+00 1688
5 TraesCS5A01G310300 chr3B 79.669 846 145 17 1565 2395 68292181 68291348 3.430000e-163 584
6 TraesCS5A01G310300 chr3B 97.842 278 5 1 646 922 525236590 525236867 1.670000e-131 479
7 TraesCS5A01G310300 chr3B 82.198 455 69 6 1943 2386 53567659 53568112 4.830000e-102 381
8 TraesCS5A01G310300 chr2B 82.146 1277 190 21 1134 2396 608200196 608201448 0.000000e+00 1061
9 TraesCS5A01G310300 chr2B 86.422 626 58 12 1782 2395 132060422 132059812 0.000000e+00 660
10 TraesCS5A01G310300 chr7B 79.932 1475 213 41 981 2396 270535646 270534196 0.000000e+00 1007
11 TraesCS5A01G310300 chr6B 89.515 763 66 5 1646 2396 86411644 86410884 0.000000e+00 953
12 TraesCS5A01G310300 chr6B 84.018 682 91 9 966 1644 86439872 86439206 7.220000e-180 640
13 TraesCS5A01G310300 chr5D 85.185 891 99 15 1520 2395 432215391 432216263 0.000000e+00 883
14 TraesCS5A01G310300 chr5D 88.154 650 65 7 1 645 410604664 410604022 0.000000e+00 763
15 TraesCS5A01G310300 chr5D 84.848 264 36 4 1630 1891 480815967 480816228 1.830000e-66 263
16 TraesCS5A01G310300 chr5B 83.230 161 23 3 647 805 625035730 625035888 6.900000e-31 145
17 TraesCS5A01G310300 chr5B 85.714 133 19 0 647 779 628606456 628606588 8.930000e-30 141


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G310300 chr5A 522110439 522112834 2395 True 4425.0 4425 100.0000 1 2396 1 chr5A.!!$R1 2395
1 TraesCS5A01G310300 chr4B 618614002 618615752 1750 False 3099.0 3099 98.6310 647 2396 1 chr4B.!!$F1 1749
2 TraesCS5A01G310300 chr7A 44448471 44450634 2163 False 1049.0 1905 89.6805 647 2391 2 chr7A.!!$F1 1744
3 TraesCS5A01G310300 chr3B 525236590 525238473 1883 False 1083.5 1688 97.7535 646 2396 2 chr3B.!!$F2 1750
4 TraesCS5A01G310300 chr3B 68291348 68292181 833 True 584.0 584 79.6690 1565 2395 1 chr3B.!!$R1 830
5 TraesCS5A01G310300 chr2B 608200196 608201448 1252 False 1061.0 1061 82.1460 1134 2396 1 chr2B.!!$F1 1262
6 TraesCS5A01G310300 chr2B 132059812 132060422 610 True 660.0 660 86.4220 1782 2395 1 chr2B.!!$R1 613
7 TraesCS5A01G310300 chr7B 270534196 270535646 1450 True 1007.0 1007 79.9320 981 2396 1 chr7B.!!$R1 1415
8 TraesCS5A01G310300 chr6B 86410884 86411644 760 True 953.0 953 89.5150 1646 2396 1 chr6B.!!$R1 750
9 TraesCS5A01G310300 chr6B 86439206 86439872 666 True 640.0 640 84.0180 966 1644 1 chr6B.!!$R2 678
10 TraesCS5A01G310300 chr5D 432215391 432216263 872 False 883.0 883 85.1850 1520 2395 1 chr5D.!!$F1 875
11 TraesCS5A01G310300 chr5D 410604022 410604664 642 True 763.0 763 88.1540 1 645 1 chr5D.!!$R1 644

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
397 400 0.036732 GAGTGCACCAACCCATCTGA 59.963 55.0 14.63 0.0 0.0 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1435 1958 2.414559 CGTTCAGAGCCATGCGATTTTT 60.415 45.455 0.0 0.0 0.0 1.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 6.179756 TGGATCTTTGCTAGTTGATTGCTAA 58.820 36.000 0.00 0.00 0.00 3.09
61 62 7.053498 TGCTAGTTGATTGCTAATCATACCAA 58.947 34.615 10.89 0.00 46.50 3.67
76 77 8.534954 AATCATACCAAGTGCTACTCTACTAA 57.465 34.615 0.00 0.00 0.00 2.24
88 89 9.518906 GTGCTACTCTACTAACTTATTCTTTCC 57.481 37.037 0.00 0.00 0.00 3.13
145 146 5.913137 TCATGGTTTACCTTATTTGCAGG 57.087 39.130 0.00 0.00 37.45 4.85
153 154 7.042321 GGTTTACCTTATTTGCAGGAAAACAAC 60.042 37.037 0.00 0.00 35.14 3.32
157 158 5.174943 CCTTATTTGCAGGAAAACAACGAAC 59.825 40.000 0.00 0.00 32.41 3.95
161 162 1.864029 GCAGGAAAACAACGAACTGGC 60.864 52.381 0.00 0.00 0.00 4.85
172 173 4.273480 ACAACGAACTGGCTTGATATATGC 59.727 41.667 0.00 0.00 0.00 3.14
177 178 6.710295 ACGAACTGGCTTGATATATGCATAAA 59.290 34.615 11.13 0.00 0.00 1.40
231 234 8.946797 AGTCTACTCAAAGGTACCTTAAGTTA 57.053 34.615 31.91 22.85 34.84 2.24
243 246 7.551617 AGGTACCTTAAGTTACATGCACATTAC 59.448 37.037 9.21 0.00 0.00 1.89
304 307 3.363178 GCATACGCAAATACTTGAAGCC 58.637 45.455 0.00 0.00 38.36 4.35
305 308 3.065371 GCATACGCAAATACTTGAAGCCT 59.935 43.478 0.00 0.00 38.36 4.58
306 309 4.591202 CATACGCAAATACTTGAAGCCTG 58.409 43.478 0.00 0.00 34.14 4.85
307 310 2.504367 ACGCAAATACTTGAAGCCTGT 58.496 42.857 0.00 0.00 34.14 4.00
308 311 2.226437 ACGCAAATACTTGAAGCCTGTG 59.774 45.455 0.00 0.00 34.14 3.66
309 312 2.226437 CGCAAATACTTGAAGCCTGTGT 59.774 45.455 0.00 0.00 34.14 3.72
310 313 3.667960 CGCAAATACTTGAAGCCTGTGTC 60.668 47.826 0.00 0.00 34.14 3.67
311 314 3.503748 GCAAATACTTGAAGCCTGTGTCT 59.496 43.478 0.00 0.00 34.14 3.41
312 315 4.022849 GCAAATACTTGAAGCCTGTGTCTT 60.023 41.667 0.00 0.00 34.14 3.01
313 316 5.455392 CAAATACTTGAAGCCTGTGTCTTG 58.545 41.667 0.00 0.00 34.14 3.02
314 317 1.972872 ACTTGAAGCCTGTGTCTTGG 58.027 50.000 0.00 0.00 0.00 3.61
315 318 1.212935 ACTTGAAGCCTGTGTCTTGGT 59.787 47.619 0.00 0.00 0.00 3.67
316 319 1.605710 CTTGAAGCCTGTGTCTTGGTG 59.394 52.381 0.00 0.00 0.00 4.17
317 320 0.546122 TGAAGCCTGTGTCTTGGTGT 59.454 50.000 0.00 0.00 0.00 4.16
318 321 1.765904 TGAAGCCTGTGTCTTGGTGTA 59.234 47.619 0.00 0.00 0.00 2.90
319 322 2.224281 TGAAGCCTGTGTCTTGGTGTAG 60.224 50.000 0.00 0.00 0.00 2.74
320 323 1.717032 AGCCTGTGTCTTGGTGTAGA 58.283 50.000 0.00 0.00 0.00 2.59
321 324 2.260822 AGCCTGTGTCTTGGTGTAGAT 58.739 47.619 0.00 0.00 0.00 1.98
322 325 2.027745 AGCCTGTGTCTTGGTGTAGATG 60.028 50.000 0.00 0.00 0.00 2.90
323 326 2.289694 GCCTGTGTCTTGGTGTAGATGT 60.290 50.000 0.00 0.00 0.00 3.06
324 327 3.329386 CCTGTGTCTTGGTGTAGATGTG 58.671 50.000 0.00 0.00 0.00 3.21
325 328 3.329386 CTGTGTCTTGGTGTAGATGTGG 58.671 50.000 0.00 0.00 0.00 4.17
326 329 2.076863 GTGTCTTGGTGTAGATGTGGC 58.923 52.381 0.00 0.00 0.00 5.01
327 330 1.696884 TGTCTTGGTGTAGATGTGGCA 59.303 47.619 0.00 0.00 0.00 4.92
328 331 2.289631 TGTCTTGGTGTAGATGTGGCAG 60.290 50.000 0.00 0.00 0.00 4.85
329 332 2.028112 GTCTTGGTGTAGATGTGGCAGA 60.028 50.000 0.00 0.00 0.00 4.26
330 333 2.840038 TCTTGGTGTAGATGTGGCAGAT 59.160 45.455 0.00 0.00 0.00 2.90
331 334 3.264193 TCTTGGTGTAGATGTGGCAGATT 59.736 43.478 0.00 0.00 0.00 2.40
332 335 2.989909 TGGTGTAGATGTGGCAGATTG 58.010 47.619 0.00 0.00 0.00 2.67
333 336 2.571202 TGGTGTAGATGTGGCAGATTGA 59.429 45.455 0.00 0.00 0.00 2.57
334 337 3.200605 TGGTGTAGATGTGGCAGATTGAT 59.799 43.478 0.00 0.00 0.00 2.57
335 338 4.408596 TGGTGTAGATGTGGCAGATTGATA 59.591 41.667 0.00 0.00 0.00 2.15
336 339 4.993584 GGTGTAGATGTGGCAGATTGATAG 59.006 45.833 0.00 0.00 0.00 2.08
337 340 5.221521 GGTGTAGATGTGGCAGATTGATAGA 60.222 44.000 0.00 0.00 0.00 1.98
338 341 6.283694 GTGTAGATGTGGCAGATTGATAGAA 58.716 40.000 0.00 0.00 0.00 2.10
339 342 6.423302 GTGTAGATGTGGCAGATTGATAGAAG 59.577 42.308 0.00 0.00 0.00 2.85
340 343 4.387598 AGATGTGGCAGATTGATAGAAGC 58.612 43.478 0.00 0.00 0.00 3.86
341 344 3.920231 TGTGGCAGATTGATAGAAGCT 57.080 42.857 0.00 0.00 0.00 3.74
342 345 5.306419 AGATGTGGCAGATTGATAGAAGCTA 59.694 40.000 0.00 0.00 0.00 3.32
343 346 4.953667 TGTGGCAGATTGATAGAAGCTAG 58.046 43.478 0.00 0.00 0.00 3.42
344 347 3.745458 GTGGCAGATTGATAGAAGCTAGC 59.255 47.826 6.62 6.62 0.00 3.42
345 348 3.389002 TGGCAGATTGATAGAAGCTAGCA 59.611 43.478 18.83 0.00 0.00 3.49
346 349 4.141642 TGGCAGATTGATAGAAGCTAGCAA 60.142 41.667 18.83 7.48 0.00 3.91
347 350 4.213059 GGCAGATTGATAGAAGCTAGCAAC 59.787 45.833 18.83 10.23 0.00 4.17
348 351 4.813161 GCAGATTGATAGAAGCTAGCAACA 59.187 41.667 18.83 4.60 0.00 3.33
349 352 5.469421 GCAGATTGATAGAAGCTAGCAACAT 59.531 40.000 18.83 4.13 0.00 2.71
350 353 6.648310 GCAGATTGATAGAAGCTAGCAACATA 59.352 38.462 18.83 4.49 0.00 2.29
351 354 7.359933 GCAGATTGATAGAAGCTAGCAACATAC 60.360 40.741 18.83 4.83 0.00 2.39
352 355 7.654923 CAGATTGATAGAAGCTAGCAACATACA 59.345 37.037 18.83 7.46 0.00 2.29
353 356 7.655328 AGATTGATAGAAGCTAGCAACATACAC 59.345 37.037 18.83 1.97 0.00 2.90
354 357 6.471233 TGATAGAAGCTAGCAACATACACT 57.529 37.500 18.83 6.40 0.00 3.55
355 358 6.276091 TGATAGAAGCTAGCAACATACACTG 58.724 40.000 18.83 0.00 0.00 3.66
356 359 3.265791 AGAAGCTAGCAACATACACTGC 58.734 45.455 18.83 0.00 38.91 4.40
358 361 4.160439 AGAAGCTAGCAACATACACTGCTA 59.840 41.667 18.83 3.93 46.92 3.49
368 371 8.190784 AGCAACATACACTGCTAAATTTATTCC 58.809 33.333 0.00 0.00 46.92 3.01
369 372 7.435192 GCAACATACACTGCTAAATTTATTCCC 59.565 37.037 0.00 0.00 35.62 3.97
370 373 8.686334 CAACATACACTGCTAAATTTATTCCCT 58.314 33.333 0.00 0.00 0.00 4.20
371 374 8.823220 ACATACACTGCTAAATTTATTCCCTT 57.177 30.769 0.00 0.00 0.00 3.95
372 375 8.686334 ACATACACTGCTAAATTTATTCCCTTG 58.314 33.333 0.00 0.00 0.00 3.61
373 376 8.902806 CATACACTGCTAAATTTATTCCCTTGA 58.097 33.333 0.00 0.00 0.00 3.02
374 377 7.961326 ACACTGCTAAATTTATTCCCTTGAT 57.039 32.000 0.00 0.00 0.00 2.57
375 378 8.366359 ACACTGCTAAATTTATTCCCTTGATT 57.634 30.769 0.00 0.00 0.00 2.57
376 379 8.815912 ACACTGCTAAATTTATTCCCTTGATTT 58.184 29.630 0.00 0.00 0.00 2.17
377 380 9.657419 CACTGCTAAATTTATTCCCTTGATTTT 57.343 29.630 0.00 0.00 0.00 1.82
378 381 9.657419 ACTGCTAAATTTATTCCCTTGATTTTG 57.343 29.630 0.00 0.00 0.00 2.44
379 382 9.874205 CTGCTAAATTTATTCCCTTGATTTTGA 57.126 29.630 0.00 0.00 0.00 2.69
380 383 9.874205 TGCTAAATTTATTCCCTTGATTTTGAG 57.126 29.630 0.00 0.00 0.00 3.02
381 384 9.875691 GCTAAATTTATTCCCTTGATTTTGAGT 57.124 29.630 0.00 0.00 0.00 3.41
383 386 8.552083 AAATTTATTCCCTTGATTTTGAGTGC 57.448 30.769 0.00 0.00 0.00 4.40
384 387 6.662865 TTTATTCCCTTGATTTTGAGTGCA 57.337 33.333 0.00 0.00 0.00 4.57
385 388 4.525912 ATTCCCTTGATTTTGAGTGCAC 57.474 40.909 9.40 9.40 0.00 4.57
386 389 2.238521 TCCCTTGATTTTGAGTGCACC 58.761 47.619 14.63 5.76 0.00 5.01
387 390 1.962807 CCCTTGATTTTGAGTGCACCA 59.037 47.619 14.63 8.65 0.00 4.17
388 391 2.364970 CCCTTGATTTTGAGTGCACCAA 59.635 45.455 14.63 14.48 0.00 3.67
389 392 3.383761 CCTTGATTTTGAGTGCACCAAC 58.616 45.455 14.63 6.28 0.00 3.77
390 393 3.383761 CTTGATTTTGAGTGCACCAACC 58.616 45.455 14.63 9.49 0.00 3.77
391 394 1.686052 TGATTTTGAGTGCACCAACCC 59.314 47.619 14.63 9.19 0.00 4.11
392 395 1.686052 GATTTTGAGTGCACCAACCCA 59.314 47.619 14.63 1.22 0.00 4.51
393 396 1.786937 TTTTGAGTGCACCAACCCAT 58.213 45.000 14.63 0.00 0.00 4.00
394 397 1.327303 TTTGAGTGCACCAACCCATC 58.673 50.000 14.63 2.88 0.00 3.51
395 398 0.478072 TTGAGTGCACCAACCCATCT 59.522 50.000 14.63 0.00 0.00 2.90
396 399 0.250858 TGAGTGCACCAACCCATCTG 60.251 55.000 14.63 0.00 0.00 2.90
397 400 0.036732 GAGTGCACCAACCCATCTGA 59.963 55.000 14.63 0.00 0.00 3.27
398 401 0.700564 AGTGCACCAACCCATCTGAT 59.299 50.000 14.63 0.00 0.00 2.90
399 402 1.915489 AGTGCACCAACCCATCTGATA 59.085 47.619 14.63 0.00 0.00 2.15
400 403 2.092753 AGTGCACCAACCCATCTGATAG 60.093 50.000 14.63 0.00 0.00 2.08
401 404 1.312815 GCACCAACCCATCTGATAGC 58.687 55.000 0.00 0.00 0.00 2.97
402 405 1.408683 GCACCAACCCATCTGATAGCA 60.409 52.381 0.00 0.00 0.00 3.49
403 406 2.292267 CACCAACCCATCTGATAGCAC 58.708 52.381 0.00 0.00 0.00 4.40
404 407 1.915489 ACCAACCCATCTGATAGCACA 59.085 47.619 0.00 0.00 0.00 4.57
405 408 2.511218 ACCAACCCATCTGATAGCACAT 59.489 45.455 0.00 0.00 0.00 3.21
406 409 3.053395 ACCAACCCATCTGATAGCACATT 60.053 43.478 0.00 0.00 0.00 2.71
407 410 3.317149 CCAACCCATCTGATAGCACATTG 59.683 47.826 0.00 0.00 0.00 2.82
408 411 3.939740 ACCCATCTGATAGCACATTGT 57.060 42.857 0.00 0.00 0.00 2.71
409 412 4.240881 ACCCATCTGATAGCACATTGTT 57.759 40.909 0.00 0.00 0.00 2.83
410 413 4.603131 ACCCATCTGATAGCACATTGTTT 58.397 39.130 0.00 0.00 0.00 2.83
411 414 4.400251 ACCCATCTGATAGCACATTGTTTG 59.600 41.667 0.00 0.00 0.00 2.93
412 415 4.202080 CCCATCTGATAGCACATTGTTTGG 60.202 45.833 0.00 0.00 0.00 3.28
413 416 4.202080 CCATCTGATAGCACATTGTTTGGG 60.202 45.833 0.00 0.00 0.00 4.12
414 417 4.032960 TCTGATAGCACATTGTTTGGGT 57.967 40.909 0.00 0.00 0.00 4.51
415 418 3.758023 TCTGATAGCACATTGTTTGGGTG 59.242 43.478 0.00 0.00 35.68 4.61
416 419 3.495331 TGATAGCACATTGTTTGGGTGT 58.505 40.909 0.00 0.00 35.05 4.16
417 420 4.657013 TGATAGCACATTGTTTGGGTGTA 58.343 39.130 0.00 0.00 35.05 2.90
418 421 5.073428 TGATAGCACATTGTTTGGGTGTAA 58.927 37.500 0.00 0.00 35.05 2.41
419 422 5.182950 TGATAGCACATTGTTTGGGTGTAAG 59.817 40.000 0.00 0.00 35.05 2.34
420 423 3.295973 AGCACATTGTTTGGGTGTAAGT 58.704 40.909 0.00 0.00 35.05 2.24
421 424 4.465886 AGCACATTGTTTGGGTGTAAGTA 58.534 39.130 0.00 0.00 35.05 2.24
422 425 4.277423 AGCACATTGTTTGGGTGTAAGTAC 59.723 41.667 0.00 0.00 35.05 2.73
423 426 4.277423 GCACATTGTTTGGGTGTAAGTACT 59.723 41.667 0.00 0.00 35.05 2.73
424 427 5.221165 GCACATTGTTTGGGTGTAAGTACTT 60.221 40.000 13.68 13.68 35.05 2.24
425 428 6.205784 CACATTGTTTGGGTGTAAGTACTTG 58.794 40.000 18.56 0.00 0.00 3.16
426 429 5.889289 ACATTGTTTGGGTGTAAGTACTTGT 59.111 36.000 18.56 0.00 0.00 3.16
427 430 6.378848 ACATTGTTTGGGTGTAAGTACTTGTT 59.621 34.615 18.56 0.00 0.00 2.83
428 431 6.837471 TTGTTTGGGTGTAAGTACTTGTTT 57.163 33.333 18.56 0.00 0.00 2.83
429 432 6.837471 TGTTTGGGTGTAAGTACTTGTTTT 57.163 33.333 18.56 0.00 0.00 2.43
430 433 7.229581 TGTTTGGGTGTAAGTACTTGTTTTT 57.770 32.000 18.56 0.00 0.00 1.94
431 434 8.345724 TGTTTGGGTGTAAGTACTTGTTTTTA 57.654 30.769 18.56 0.00 0.00 1.52
432 435 8.242739 TGTTTGGGTGTAAGTACTTGTTTTTAC 58.757 33.333 18.56 7.63 0.00 2.01
433 436 8.461222 GTTTGGGTGTAAGTACTTGTTTTTACT 58.539 33.333 18.56 0.00 0.00 2.24
434 437 8.578448 TTGGGTGTAAGTACTTGTTTTTACTT 57.422 30.769 18.56 0.00 40.74 2.24
435 438 8.578448 TGGGTGTAAGTACTTGTTTTTACTTT 57.422 30.769 18.56 0.00 38.97 2.66
436 439 8.676401 TGGGTGTAAGTACTTGTTTTTACTTTC 58.324 33.333 18.56 3.06 38.97 2.62
437 440 8.676401 GGGTGTAAGTACTTGTTTTTACTTTCA 58.324 33.333 18.56 0.00 38.97 2.69
444 447 9.646427 AGTACTTGTTTTTACTTTCAATTTGCA 57.354 25.926 0.00 0.00 0.00 4.08
447 450 8.998377 ACTTGTTTTTACTTTCAATTTGCAAGT 58.002 25.926 16.64 16.64 37.57 3.16
448 451 9.824534 CTTGTTTTTACTTTCAATTTGCAAGTT 57.175 25.926 17.44 0.65 35.56 2.66
449 452 9.818796 TTGTTTTTACTTTCAATTTGCAAGTTC 57.181 25.926 17.44 6.72 35.56 3.01
450 453 8.447053 TGTTTTTACTTTCAATTTGCAAGTTCC 58.553 29.630 17.44 5.03 35.56 3.62
451 454 7.546778 TTTTACTTTCAATTTGCAAGTTCCC 57.453 32.000 17.44 0.00 35.56 3.97
452 455 6.478512 TTACTTTCAATTTGCAAGTTCCCT 57.521 33.333 17.44 0.00 35.56 4.20
453 456 7.589958 TTACTTTCAATTTGCAAGTTCCCTA 57.410 32.000 17.44 0.00 35.56 3.53
454 457 6.089249 ACTTTCAATTTGCAAGTTCCCTAG 57.911 37.500 8.38 3.28 29.85 3.02
455 458 5.598417 ACTTTCAATTTGCAAGTTCCCTAGT 59.402 36.000 8.38 3.85 29.85 2.57
456 459 6.098266 ACTTTCAATTTGCAAGTTCCCTAGTT 59.902 34.615 8.38 0.00 29.85 2.24
457 460 5.705609 TCAATTTGCAAGTTCCCTAGTTC 57.294 39.130 3.92 0.00 0.00 3.01
458 461 4.522789 TCAATTTGCAAGTTCCCTAGTTCC 59.477 41.667 3.92 0.00 0.00 3.62
459 462 3.586470 TTTGCAAGTTCCCTAGTTCCA 57.414 42.857 0.00 0.00 0.00 3.53
460 463 3.806949 TTGCAAGTTCCCTAGTTCCAT 57.193 42.857 0.00 0.00 0.00 3.41
461 464 4.919774 TTGCAAGTTCCCTAGTTCCATA 57.080 40.909 0.00 0.00 0.00 2.74
462 465 5.450818 TTGCAAGTTCCCTAGTTCCATAT 57.549 39.130 0.00 0.00 0.00 1.78
463 466 5.036117 TGCAAGTTCCCTAGTTCCATATC 57.964 43.478 0.00 0.00 0.00 1.63
464 467 4.721776 TGCAAGTTCCCTAGTTCCATATCT 59.278 41.667 0.00 0.00 0.00 1.98
465 468 5.059833 GCAAGTTCCCTAGTTCCATATCTG 58.940 45.833 0.00 0.00 0.00 2.90
466 469 4.965200 AGTTCCCTAGTTCCATATCTGC 57.035 45.455 0.00 0.00 0.00 4.26
467 470 4.298626 AGTTCCCTAGTTCCATATCTGCA 58.701 43.478 0.00 0.00 0.00 4.41
468 471 4.910304 AGTTCCCTAGTTCCATATCTGCAT 59.090 41.667 0.00 0.00 0.00 3.96
469 472 6.084738 AGTTCCCTAGTTCCATATCTGCATA 58.915 40.000 0.00 0.00 0.00 3.14
470 473 6.014156 AGTTCCCTAGTTCCATATCTGCATAC 60.014 42.308 0.00 0.00 0.00 2.39
471 474 4.777896 TCCCTAGTTCCATATCTGCATACC 59.222 45.833 0.00 0.00 0.00 2.73
472 475 4.532126 CCCTAGTTCCATATCTGCATACCA 59.468 45.833 0.00 0.00 0.00 3.25
473 476 5.337894 CCCTAGTTCCATATCTGCATACCAG 60.338 48.000 0.00 0.00 43.17 4.00
474 477 5.247110 CCTAGTTCCATATCTGCATACCAGT 59.753 44.000 0.00 0.00 42.38 4.00
475 478 5.636903 AGTTCCATATCTGCATACCAGTT 57.363 39.130 0.00 0.00 42.38 3.16
476 479 5.615289 AGTTCCATATCTGCATACCAGTTC 58.385 41.667 0.00 0.00 42.38 3.01
477 480 4.623932 TCCATATCTGCATACCAGTTCC 57.376 45.455 0.00 0.00 42.38 3.62
478 481 3.327757 TCCATATCTGCATACCAGTTCCC 59.672 47.826 0.00 0.00 42.38 3.97
479 482 3.328931 CCATATCTGCATACCAGTTCCCT 59.671 47.826 0.00 0.00 42.38 4.20
480 483 4.532126 CCATATCTGCATACCAGTTCCCTA 59.468 45.833 0.00 0.00 42.38 3.53
481 484 5.190528 CCATATCTGCATACCAGTTCCCTAT 59.809 44.000 0.00 0.00 42.38 2.57
482 485 6.296662 CCATATCTGCATACCAGTTCCCTATT 60.297 42.308 0.00 0.00 42.38 1.73
483 486 5.653255 ATCTGCATACCAGTTCCCTATTT 57.347 39.130 0.00 0.00 42.38 1.40
484 487 6.763715 ATCTGCATACCAGTTCCCTATTTA 57.236 37.500 0.00 0.00 42.38 1.40
485 488 5.925509 TCTGCATACCAGTTCCCTATTTAC 58.074 41.667 0.00 0.00 42.38 2.01
486 489 5.427157 TCTGCATACCAGTTCCCTATTTACA 59.573 40.000 0.00 0.00 42.38 2.41
487 490 6.068461 TGCATACCAGTTCCCTATTTACAA 57.932 37.500 0.00 0.00 0.00 2.41
488 491 6.119536 TGCATACCAGTTCCCTATTTACAAG 58.880 40.000 0.00 0.00 0.00 3.16
489 492 6.120220 GCATACCAGTTCCCTATTTACAAGT 58.880 40.000 0.00 0.00 0.00 3.16
490 493 6.260271 GCATACCAGTTCCCTATTTACAAGTC 59.740 42.308 0.00 0.00 0.00 3.01
491 494 7.565680 CATACCAGTTCCCTATTTACAAGTCT 58.434 38.462 0.00 0.00 0.00 3.24
492 495 8.701895 CATACCAGTTCCCTATTTACAAGTCTA 58.298 37.037 0.00 0.00 0.00 2.59
493 496 7.184067 ACCAGTTCCCTATTTACAAGTCTAG 57.816 40.000 0.00 0.00 0.00 2.43
494 497 6.958192 ACCAGTTCCCTATTTACAAGTCTAGA 59.042 38.462 0.00 0.00 0.00 2.43
495 498 7.124448 ACCAGTTCCCTATTTACAAGTCTAGAG 59.876 40.741 0.00 0.00 0.00 2.43
496 499 7.342284 CCAGTTCCCTATTTACAAGTCTAGAGA 59.658 40.741 0.00 0.00 0.00 3.10
497 500 8.410141 CAGTTCCCTATTTACAAGTCTAGAGAG 58.590 40.741 0.00 0.00 0.00 3.20
498 501 6.963083 TCCCTATTTACAAGTCTAGAGAGC 57.037 41.667 0.00 0.00 0.00 4.09
499 502 6.432581 TCCCTATTTACAAGTCTAGAGAGCA 58.567 40.000 0.00 0.00 0.00 4.26
500 503 6.895756 TCCCTATTTACAAGTCTAGAGAGCAA 59.104 38.462 0.00 0.00 0.00 3.91
501 504 7.399191 TCCCTATTTACAAGTCTAGAGAGCAAA 59.601 37.037 0.00 0.00 0.00 3.68
502 505 7.492994 CCCTATTTACAAGTCTAGAGAGCAAAC 59.507 40.741 0.00 0.00 0.00 2.93
503 506 8.254508 CCTATTTACAAGTCTAGAGAGCAAACT 58.745 37.037 0.00 0.00 0.00 2.66
507 510 9.998106 TTTACAAGTCTAGAGAGCAAACTATTT 57.002 29.630 0.00 0.00 0.00 1.40
508 511 9.998106 TTACAAGTCTAGAGAGCAAACTATTTT 57.002 29.630 0.00 0.00 0.00 1.82
509 512 8.316640 ACAAGTCTAGAGAGCAAACTATTTTG 57.683 34.615 0.00 1.35 44.42 2.44
510 513 7.934120 ACAAGTCTAGAGAGCAAACTATTTTGT 59.066 33.333 7.31 0.00 43.62 2.83
511 514 8.778358 CAAGTCTAGAGAGCAAACTATTTTGTT 58.222 33.333 7.31 1.31 43.62 2.83
512 515 8.316640 AGTCTAGAGAGCAAACTATTTTGTTG 57.683 34.615 7.31 0.00 43.62 3.33
513 516 7.934120 AGTCTAGAGAGCAAACTATTTTGTTGT 59.066 33.333 7.31 0.13 43.62 3.32
514 517 8.560374 GTCTAGAGAGCAAACTATTTTGTTGTT 58.440 33.333 7.31 0.00 43.62 2.83
515 518 9.120538 TCTAGAGAGCAAACTATTTTGTTGTTT 57.879 29.630 7.31 0.00 43.62 2.83
518 521 9.683069 AGAGAGCAAACTATTTTGTTGTTTATG 57.317 29.630 7.31 0.00 43.62 1.90
519 522 9.463443 GAGAGCAAACTATTTTGTTGTTTATGT 57.537 29.630 7.31 0.00 43.62 2.29
526 529 9.855021 AACTATTTTGTTGTTTATGTAGATGGC 57.145 29.630 0.00 0.00 0.00 4.40
527 530 9.019656 ACTATTTTGTTGTTTATGTAGATGGCA 57.980 29.630 0.00 0.00 0.00 4.92
528 531 9.507280 CTATTTTGTTGTTTATGTAGATGGCAG 57.493 33.333 0.00 0.00 0.00 4.85
529 532 4.963276 TGTTGTTTATGTAGATGGCAGC 57.037 40.909 0.00 0.00 0.00 5.25
530 533 3.694072 TGTTGTTTATGTAGATGGCAGCC 59.306 43.478 3.66 3.66 0.00 4.85
531 534 3.643199 TGTTTATGTAGATGGCAGCCA 57.357 42.857 18.99 18.99 38.19 4.75
533 536 3.884693 TGTTTATGTAGATGGCAGCCATG 59.115 43.478 32.58 0.00 45.26 3.66
534 537 2.865119 TATGTAGATGGCAGCCATGG 57.135 50.000 32.58 7.63 45.26 3.66
535 538 0.538977 ATGTAGATGGCAGCCATGGC 60.539 55.000 32.58 30.12 45.26 4.40
546 549 2.967270 GCCATGGCTTCTTCCAACT 58.033 52.632 29.98 0.00 39.96 3.16
547 550 0.529378 GCCATGGCTTCTTCCAACTG 59.471 55.000 29.98 0.00 39.96 3.16
548 551 0.529378 CCATGGCTTCTTCCAACTGC 59.471 55.000 0.00 0.00 39.96 4.40
549 552 0.169672 CATGGCTTCTTCCAACTGCG 59.830 55.000 0.00 0.00 39.96 5.18
550 553 0.250901 ATGGCTTCTTCCAACTGCGT 60.251 50.000 0.00 0.00 39.96 5.24
551 554 0.465460 TGGCTTCTTCCAACTGCGTT 60.465 50.000 0.00 0.00 32.18 4.84
552 555 1.202710 TGGCTTCTTCCAACTGCGTTA 60.203 47.619 0.00 0.00 32.18 3.18
553 556 2.084546 GGCTTCTTCCAACTGCGTTAT 58.915 47.619 0.00 0.00 0.00 1.89
554 557 2.096013 GGCTTCTTCCAACTGCGTTATC 59.904 50.000 0.00 0.00 0.00 1.75
555 558 3.003480 GCTTCTTCCAACTGCGTTATCT 58.997 45.455 0.00 0.00 0.00 1.98
556 559 3.181516 GCTTCTTCCAACTGCGTTATCTG 60.182 47.826 0.00 0.00 0.00 2.90
557 560 2.346803 TCTTCCAACTGCGTTATCTGC 58.653 47.619 0.00 0.00 0.00 4.26
558 561 2.028112 TCTTCCAACTGCGTTATCTGCT 60.028 45.455 0.00 0.00 0.00 4.24
559 562 2.472695 TCCAACTGCGTTATCTGCTT 57.527 45.000 0.00 0.00 0.00 3.91
560 563 2.778299 TCCAACTGCGTTATCTGCTTT 58.222 42.857 0.00 0.00 0.00 3.51
561 564 2.483877 TCCAACTGCGTTATCTGCTTTG 59.516 45.455 0.00 0.00 0.00 2.77
562 565 2.245096 CAACTGCGTTATCTGCTTTGC 58.755 47.619 0.00 0.00 0.00 3.68
563 566 0.443869 ACTGCGTTATCTGCTTTGCG 59.556 50.000 0.00 0.00 0.00 4.85
564 567 0.443869 CTGCGTTATCTGCTTTGCGT 59.556 50.000 0.00 0.00 0.00 5.24
565 568 0.165727 TGCGTTATCTGCTTTGCGTG 59.834 50.000 0.00 0.00 0.00 5.34
566 569 0.165944 GCGTTATCTGCTTTGCGTGT 59.834 50.000 0.00 0.00 0.00 4.49
567 570 1.869503 CGTTATCTGCTTTGCGTGTG 58.130 50.000 0.00 0.00 0.00 3.82
568 571 1.464023 CGTTATCTGCTTTGCGTGTGG 60.464 52.381 0.00 0.00 0.00 4.17
569 572 1.804151 GTTATCTGCTTTGCGTGTGGA 59.196 47.619 0.00 0.00 0.00 4.02
570 573 1.725641 TATCTGCTTTGCGTGTGGAG 58.274 50.000 0.00 0.00 0.00 3.86
571 574 0.250467 ATCTGCTTTGCGTGTGGAGT 60.250 50.000 0.00 0.00 0.00 3.85
572 575 0.391228 TCTGCTTTGCGTGTGGAGTA 59.609 50.000 0.00 0.00 0.00 2.59
573 576 1.202592 TCTGCTTTGCGTGTGGAGTAA 60.203 47.619 0.00 0.00 0.00 2.24
574 577 0.941542 TGCTTTGCGTGTGGAGTAAC 59.058 50.000 0.00 0.00 0.00 2.50
575 578 0.941542 GCTTTGCGTGTGGAGTAACA 59.058 50.000 0.00 0.00 0.00 2.41
576 579 1.333791 GCTTTGCGTGTGGAGTAACAC 60.334 52.381 0.00 0.00 45.70 3.32
577 580 2.210116 CTTTGCGTGTGGAGTAACACT 58.790 47.619 5.97 0.00 46.73 3.55
578 581 2.319136 TTGCGTGTGGAGTAACACTT 57.681 45.000 5.97 0.00 46.73 3.16
579 582 2.319136 TGCGTGTGGAGTAACACTTT 57.681 45.000 5.97 0.00 46.73 2.66
580 583 2.206750 TGCGTGTGGAGTAACACTTTC 58.793 47.619 5.97 0.00 46.73 2.62
581 584 2.206750 GCGTGTGGAGTAACACTTTCA 58.793 47.619 5.97 0.00 46.73 2.69
582 585 2.806244 GCGTGTGGAGTAACACTTTCAT 59.194 45.455 5.97 0.00 46.73 2.57
583 586 3.363970 GCGTGTGGAGTAACACTTTCATG 60.364 47.826 5.97 0.00 46.73 3.07
584 587 3.807622 CGTGTGGAGTAACACTTTCATGT 59.192 43.478 5.97 0.00 46.73 3.21
585 588 4.272504 CGTGTGGAGTAACACTTTCATGTT 59.727 41.667 5.97 0.00 46.73 2.71
586 589 5.510671 GTGTGGAGTAACACTTTCATGTTG 58.489 41.667 1.46 0.00 45.69 3.33
587 590 5.065988 GTGTGGAGTAACACTTTCATGTTGT 59.934 40.000 1.46 0.00 45.69 3.32
588 591 5.065859 TGTGGAGTAACACTTTCATGTTGTG 59.934 40.000 11.67 11.67 42.74 3.33
589 592 5.065988 GTGGAGTAACACTTTCATGTTGTGT 59.934 40.000 12.65 12.65 45.42 3.72
590 593 5.295787 TGGAGTAACACTTTCATGTTGTGTC 59.704 40.000 16.60 9.05 43.11 3.67
591 594 5.295787 GGAGTAACACTTTCATGTTGTGTCA 59.704 40.000 16.60 5.04 43.11 3.58
592 595 6.183360 GGAGTAACACTTTCATGTTGTGTCAA 60.183 38.462 16.60 9.12 43.11 3.18
593 596 6.551736 AGTAACACTTTCATGTTGTGTCAAC 58.448 36.000 16.60 16.44 43.11 3.18
594 597 5.384063 AACACTTTCATGTTGTGTCAACA 57.616 34.783 15.83 15.83 43.11 3.33
595 598 4.985413 ACACTTTCATGTTGTGTCAACAG 58.015 39.130 17.84 11.41 40.39 3.16
596 599 4.142403 ACACTTTCATGTTGTGTCAACAGG 60.142 41.667 17.29 17.29 40.39 4.00
597 600 4.096231 CACTTTCATGTTGTGTCAACAGGA 59.904 41.667 20.52 20.52 38.90 3.86
598 601 9.644119 AACACTTTCATGTTGTGTCAACAGGAC 62.644 40.741 22.95 1.98 43.11 3.85
607 610 0.171903 GTCAACAGGACATGGCATGC 59.828 55.000 26.70 18.39 46.19 4.06
608 611 0.251253 TCAACAGGACATGGCATGCA 60.251 50.000 26.70 6.13 0.00 3.96
609 612 0.821517 CAACAGGACATGGCATGCAT 59.178 50.000 26.70 14.42 0.00 3.96
610 613 1.206132 CAACAGGACATGGCATGCATT 59.794 47.619 26.70 8.16 0.00 3.56
611 614 2.427812 CAACAGGACATGGCATGCATTA 59.572 45.455 26.70 5.44 0.00 1.90
612 615 2.304092 ACAGGACATGGCATGCATTAG 58.696 47.619 26.70 15.13 0.00 1.73
613 616 2.304092 CAGGACATGGCATGCATTAGT 58.696 47.619 26.70 11.89 0.00 2.24
614 617 3.117926 ACAGGACATGGCATGCATTAGTA 60.118 43.478 26.70 0.00 0.00 1.82
615 618 4.077108 CAGGACATGGCATGCATTAGTAT 58.923 43.478 26.70 4.97 0.00 2.12
616 619 5.221904 ACAGGACATGGCATGCATTAGTATA 60.222 40.000 26.70 0.00 0.00 1.47
617 620 5.884232 CAGGACATGGCATGCATTAGTATAT 59.116 40.000 26.70 3.41 0.00 0.86
618 621 5.884232 AGGACATGGCATGCATTAGTATATG 59.116 40.000 26.70 11.73 0.00 1.78
643 646 9.341078 TGCAATCAAGCAATAATAAGATAGACA 57.659 29.630 0.00 0.00 42.46 3.41
644 647 9.604626 GCAATCAAGCAATAATAAGATAGACAC 57.395 33.333 0.00 0.00 0.00 3.67
1048 1471 4.230657 CGACTTCGAGTTCTTGTCAGATT 58.769 43.478 0.00 0.00 43.02 2.40
1097 1520 7.297936 TCATGATTTCCGCCTTCTATTACTA 57.702 36.000 0.00 0.00 0.00 1.82
1099 1522 8.375506 TCATGATTTCCGCCTTCTATTACTATT 58.624 33.333 0.00 0.00 0.00 1.73
1360 1810 0.698818 AAACGATCCTCAAGCCCCTT 59.301 50.000 0.00 0.00 0.00 3.95
1894 2428 9.499479 CTCTGCCAATGTTCTTATATACAGAAT 57.501 33.333 9.25 0.00 32.86 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 7.780745 AGTTAGTAGAGTAGCACTTGGTATGAT 59.219 37.037 0.00 0.00 0.00 2.45
145 146 3.414549 TCAAGCCAGTTCGTTGTTTTC 57.585 42.857 0.00 0.00 0.00 2.29
153 154 6.726258 TTATGCATATATCAAGCCAGTTCG 57.274 37.500 7.36 0.00 0.00 3.95
157 158 6.432162 ACCACTTTATGCATATATCAAGCCAG 59.568 38.462 7.36 3.66 0.00 4.85
161 162 9.060347 ACTTGACCACTTTATGCATATATCAAG 57.940 33.333 22.91 22.91 43.07 3.02
172 173 7.483307 CAATCCCATAACTTGACCACTTTATG 58.517 38.462 0.00 0.00 33.49 1.90
177 178 3.245229 TGCAATCCCATAACTTGACCACT 60.245 43.478 0.00 0.00 0.00 4.00
288 291 2.226437 ACACAGGCTTCAAGTATTTGCG 59.774 45.455 0.00 0.00 34.21 4.85
296 299 1.605710 CACCAAGACACAGGCTTCAAG 59.394 52.381 0.00 0.00 0.00 3.02
298 301 0.546122 ACACCAAGACACAGGCTTCA 59.454 50.000 0.00 0.00 0.00 3.02
299 302 2.037251 TCTACACCAAGACACAGGCTTC 59.963 50.000 0.00 0.00 0.00 3.86
300 303 2.047061 TCTACACCAAGACACAGGCTT 58.953 47.619 0.00 0.00 0.00 4.35
301 304 1.717032 TCTACACCAAGACACAGGCT 58.283 50.000 0.00 0.00 0.00 4.58
302 305 2.289694 ACATCTACACCAAGACACAGGC 60.290 50.000 0.00 0.00 0.00 4.85
303 306 3.329386 CACATCTACACCAAGACACAGG 58.671 50.000 0.00 0.00 0.00 4.00
304 307 3.329386 CCACATCTACACCAAGACACAG 58.671 50.000 0.00 0.00 0.00 3.66
305 308 2.549992 GCCACATCTACACCAAGACACA 60.550 50.000 0.00 0.00 0.00 3.72
306 309 2.076863 GCCACATCTACACCAAGACAC 58.923 52.381 0.00 0.00 0.00 3.67
307 310 1.696884 TGCCACATCTACACCAAGACA 59.303 47.619 0.00 0.00 0.00 3.41
308 311 2.028112 TCTGCCACATCTACACCAAGAC 60.028 50.000 0.00 0.00 0.00 3.01
309 312 2.256306 TCTGCCACATCTACACCAAGA 58.744 47.619 0.00 0.00 0.00 3.02
310 313 2.768253 TCTGCCACATCTACACCAAG 57.232 50.000 0.00 0.00 0.00 3.61
311 314 3.008923 TCAATCTGCCACATCTACACCAA 59.991 43.478 0.00 0.00 0.00 3.67
312 315 2.571202 TCAATCTGCCACATCTACACCA 59.429 45.455 0.00 0.00 0.00 4.17
313 316 3.266510 TCAATCTGCCACATCTACACC 57.733 47.619 0.00 0.00 0.00 4.16
314 317 5.847304 TCTATCAATCTGCCACATCTACAC 58.153 41.667 0.00 0.00 0.00 2.90
315 318 6.484364 TTCTATCAATCTGCCACATCTACA 57.516 37.500 0.00 0.00 0.00 2.74
316 319 5.407995 GCTTCTATCAATCTGCCACATCTAC 59.592 44.000 0.00 0.00 0.00 2.59
317 320 5.306419 AGCTTCTATCAATCTGCCACATCTA 59.694 40.000 0.00 0.00 0.00 1.98
318 321 4.102838 AGCTTCTATCAATCTGCCACATCT 59.897 41.667 0.00 0.00 0.00 2.90
319 322 4.387598 AGCTTCTATCAATCTGCCACATC 58.612 43.478 0.00 0.00 0.00 3.06
320 323 4.434545 AGCTTCTATCAATCTGCCACAT 57.565 40.909 0.00 0.00 0.00 3.21
321 324 3.920231 AGCTTCTATCAATCTGCCACA 57.080 42.857 0.00 0.00 0.00 4.17
322 325 3.745458 GCTAGCTTCTATCAATCTGCCAC 59.255 47.826 7.70 0.00 0.00 5.01
323 326 3.389002 TGCTAGCTTCTATCAATCTGCCA 59.611 43.478 17.23 0.00 0.00 4.92
324 327 4.000331 TGCTAGCTTCTATCAATCTGCC 58.000 45.455 17.23 0.00 0.00 4.85
325 328 4.813161 TGTTGCTAGCTTCTATCAATCTGC 59.187 41.667 17.23 0.00 0.00 4.26
326 329 7.654923 TGTATGTTGCTAGCTTCTATCAATCTG 59.345 37.037 17.23 0.00 0.00 2.90
327 330 7.655328 GTGTATGTTGCTAGCTTCTATCAATCT 59.345 37.037 17.23 0.00 0.00 2.40
328 331 7.655328 AGTGTATGTTGCTAGCTTCTATCAATC 59.345 37.037 17.23 0.00 0.00 2.67
329 332 7.440556 CAGTGTATGTTGCTAGCTTCTATCAAT 59.559 37.037 17.23 5.57 0.00 2.57
330 333 6.758416 CAGTGTATGTTGCTAGCTTCTATCAA 59.242 38.462 17.23 0.00 0.00 2.57
331 334 6.276091 CAGTGTATGTTGCTAGCTTCTATCA 58.724 40.000 17.23 6.22 0.00 2.15
332 335 5.176590 GCAGTGTATGTTGCTAGCTTCTATC 59.823 44.000 17.23 3.65 37.35 2.08
333 336 5.053145 GCAGTGTATGTTGCTAGCTTCTAT 58.947 41.667 17.23 7.78 37.35 1.98
334 337 4.433615 GCAGTGTATGTTGCTAGCTTCTA 58.566 43.478 17.23 0.00 37.35 2.10
335 338 3.265791 GCAGTGTATGTTGCTAGCTTCT 58.734 45.455 17.23 0.66 37.35 2.85
336 339 3.665173 GCAGTGTATGTTGCTAGCTTC 57.335 47.619 17.23 9.36 37.35 3.86
343 346 7.435192 GGGAATAAATTTAGCAGTGTATGTTGC 59.565 37.037 3.94 0.00 40.57 4.17
344 347 8.686334 AGGGAATAAATTTAGCAGTGTATGTTG 58.314 33.333 3.94 0.00 0.00 3.33
345 348 8.823220 AGGGAATAAATTTAGCAGTGTATGTT 57.177 30.769 3.94 0.00 0.00 2.71
346 349 8.686334 CAAGGGAATAAATTTAGCAGTGTATGT 58.314 33.333 3.94 0.00 0.00 2.29
347 350 8.902806 TCAAGGGAATAAATTTAGCAGTGTATG 58.097 33.333 3.94 0.00 0.00 2.39
348 351 9.646522 ATCAAGGGAATAAATTTAGCAGTGTAT 57.353 29.630 3.94 0.00 0.00 2.29
349 352 9.474313 AATCAAGGGAATAAATTTAGCAGTGTA 57.526 29.630 3.94 0.00 0.00 2.90
350 353 7.961326 ATCAAGGGAATAAATTTAGCAGTGT 57.039 32.000 3.94 0.00 0.00 3.55
351 354 9.657419 AAAATCAAGGGAATAAATTTAGCAGTG 57.343 29.630 3.94 0.00 0.00 3.66
352 355 9.657419 CAAAATCAAGGGAATAAATTTAGCAGT 57.343 29.630 3.94 0.00 0.00 4.40
353 356 9.874205 TCAAAATCAAGGGAATAAATTTAGCAG 57.126 29.630 3.94 0.00 0.00 4.24
354 357 9.874205 CTCAAAATCAAGGGAATAAATTTAGCA 57.126 29.630 3.94 0.00 0.00 3.49
355 358 9.875691 ACTCAAAATCAAGGGAATAAATTTAGC 57.124 29.630 3.94 0.00 0.00 3.09
357 360 9.651913 GCACTCAAAATCAAGGGAATAAATTTA 57.348 29.630 0.00 0.00 0.00 1.40
358 361 8.156165 TGCACTCAAAATCAAGGGAATAAATTT 58.844 29.630 0.00 0.00 0.00 1.82
359 362 7.603784 GTGCACTCAAAATCAAGGGAATAAATT 59.396 33.333 10.32 0.00 0.00 1.82
360 363 7.099120 GTGCACTCAAAATCAAGGGAATAAAT 58.901 34.615 10.32 0.00 0.00 1.40
361 364 6.454795 GTGCACTCAAAATCAAGGGAATAAA 58.545 36.000 10.32 0.00 0.00 1.40
362 365 5.047377 GGTGCACTCAAAATCAAGGGAATAA 60.047 40.000 17.98 0.00 0.00 1.40
363 366 4.462483 GGTGCACTCAAAATCAAGGGAATA 59.538 41.667 17.98 0.00 0.00 1.75
364 367 3.259123 GGTGCACTCAAAATCAAGGGAAT 59.741 43.478 17.98 0.00 0.00 3.01
365 368 2.627699 GGTGCACTCAAAATCAAGGGAA 59.372 45.455 17.98 0.00 0.00 3.97
366 369 2.238521 GGTGCACTCAAAATCAAGGGA 58.761 47.619 17.98 0.00 0.00 4.20
367 370 1.962807 TGGTGCACTCAAAATCAAGGG 59.037 47.619 17.98 0.00 0.00 3.95
368 371 3.383761 GTTGGTGCACTCAAAATCAAGG 58.616 45.455 17.98 0.00 0.00 3.61
369 372 3.383761 GGTTGGTGCACTCAAAATCAAG 58.616 45.455 17.98 0.00 0.00 3.02
370 373 2.102252 GGGTTGGTGCACTCAAAATCAA 59.898 45.455 17.98 7.57 0.00 2.57
371 374 1.686052 GGGTTGGTGCACTCAAAATCA 59.314 47.619 17.98 0.67 0.00 2.57
372 375 1.686052 TGGGTTGGTGCACTCAAAATC 59.314 47.619 17.98 11.56 0.00 2.17
373 376 1.786937 TGGGTTGGTGCACTCAAAAT 58.213 45.000 17.98 0.00 0.00 1.82
374 377 1.686052 GATGGGTTGGTGCACTCAAAA 59.314 47.619 17.98 8.80 28.42 2.44
375 378 1.133513 AGATGGGTTGGTGCACTCAAA 60.134 47.619 17.98 6.43 28.42 2.69
376 379 0.478072 AGATGGGTTGGTGCACTCAA 59.522 50.000 17.98 15.85 28.42 3.02
377 380 0.250858 CAGATGGGTTGGTGCACTCA 60.251 55.000 17.98 10.37 0.00 3.41
378 381 0.036732 TCAGATGGGTTGGTGCACTC 59.963 55.000 17.98 7.60 0.00 3.51
379 382 0.700564 ATCAGATGGGTTGGTGCACT 59.299 50.000 17.98 0.00 0.00 4.40
380 383 2.292267 CTATCAGATGGGTTGGTGCAC 58.708 52.381 8.80 8.80 0.00 4.57
381 384 1.408683 GCTATCAGATGGGTTGGTGCA 60.409 52.381 0.00 0.00 0.00 4.57
382 385 1.312815 GCTATCAGATGGGTTGGTGC 58.687 55.000 0.00 0.00 0.00 5.01
383 386 2.292267 GTGCTATCAGATGGGTTGGTG 58.708 52.381 0.00 0.00 0.00 4.17
384 387 1.915489 TGTGCTATCAGATGGGTTGGT 59.085 47.619 0.00 0.00 0.00 3.67
385 388 2.715749 TGTGCTATCAGATGGGTTGG 57.284 50.000 0.00 0.00 0.00 3.77
386 389 3.949754 ACAATGTGCTATCAGATGGGTTG 59.050 43.478 0.00 0.00 0.00 3.77
387 390 4.240881 ACAATGTGCTATCAGATGGGTT 57.759 40.909 0.00 0.00 0.00 4.11
388 391 3.939740 ACAATGTGCTATCAGATGGGT 57.060 42.857 0.00 0.00 0.00 4.51
389 392 4.202080 CCAAACAATGTGCTATCAGATGGG 60.202 45.833 0.00 0.00 0.00 4.00
390 393 4.202080 CCCAAACAATGTGCTATCAGATGG 60.202 45.833 0.00 0.00 0.00 3.51
391 394 4.400251 ACCCAAACAATGTGCTATCAGATG 59.600 41.667 0.00 0.00 0.00 2.90
392 395 4.400251 CACCCAAACAATGTGCTATCAGAT 59.600 41.667 0.00 0.00 0.00 2.90
393 396 3.758023 CACCCAAACAATGTGCTATCAGA 59.242 43.478 0.00 0.00 0.00 3.27
394 397 3.507233 ACACCCAAACAATGTGCTATCAG 59.493 43.478 0.00 0.00 33.30 2.90
395 398 3.495331 ACACCCAAACAATGTGCTATCA 58.505 40.909 0.00 0.00 33.30 2.15
396 399 5.183140 ACTTACACCCAAACAATGTGCTATC 59.817 40.000 0.00 0.00 33.30 2.08
397 400 5.076873 ACTTACACCCAAACAATGTGCTAT 58.923 37.500 0.00 0.00 33.30 2.97
398 401 4.465886 ACTTACACCCAAACAATGTGCTA 58.534 39.130 0.00 0.00 33.30 3.49
399 402 3.295973 ACTTACACCCAAACAATGTGCT 58.704 40.909 0.00 0.00 33.30 4.40
400 403 3.726291 ACTTACACCCAAACAATGTGC 57.274 42.857 0.00 0.00 33.30 4.57
401 404 6.183360 ACAAGTACTTACACCCAAACAATGTG 60.183 38.462 8.04 0.00 36.11 3.21
402 405 5.889289 ACAAGTACTTACACCCAAACAATGT 59.111 36.000 8.04 0.00 0.00 2.71
403 406 6.385649 ACAAGTACTTACACCCAAACAATG 57.614 37.500 8.04 0.00 0.00 2.82
404 407 7.412853 AAACAAGTACTTACACCCAAACAAT 57.587 32.000 8.04 0.00 0.00 2.71
405 408 6.837471 AAACAAGTACTTACACCCAAACAA 57.163 33.333 8.04 0.00 0.00 2.83
406 409 6.837471 AAAACAAGTACTTACACCCAAACA 57.163 33.333 8.04 0.00 0.00 2.83
407 410 8.461222 AGTAAAAACAAGTACTTACACCCAAAC 58.539 33.333 8.04 1.06 0.00 2.93
408 411 8.578448 AGTAAAAACAAGTACTTACACCCAAA 57.422 30.769 8.04 0.00 0.00 3.28
409 412 8.578448 AAGTAAAAACAAGTACTTACACCCAA 57.422 30.769 8.04 0.00 38.48 4.12
410 413 8.578448 AAAGTAAAAACAAGTACTTACACCCA 57.422 30.769 8.04 0.00 39.15 4.51
411 414 8.676401 TGAAAGTAAAAACAAGTACTTACACCC 58.324 33.333 8.04 0.00 39.15 4.61
418 421 9.646427 TGCAAATTGAAAGTAAAAACAAGTACT 57.354 25.926 0.00 0.00 31.81 2.73
421 424 8.998377 ACTTGCAAATTGAAAGTAAAAACAAGT 58.002 25.926 17.25 9.43 44.18 3.16
422 425 9.824534 AACTTGCAAATTGAAAGTAAAAACAAG 57.175 25.926 18.84 9.71 45.23 3.16
423 426 9.818796 GAACTTGCAAATTGAAAGTAAAAACAA 57.181 25.926 18.84 0.00 45.23 2.83
424 427 8.447053 GGAACTTGCAAATTGAAAGTAAAAACA 58.553 29.630 18.84 0.00 45.23 2.83
425 428 7.908082 GGGAACTTGCAAATTGAAAGTAAAAAC 59.092 33.333 18.84 8.24 45.23 2.43
426 429 7.826744 AGGGAACTTGCAAATTGAAAGTAAAAA 59.173 29.630 18.84 0.00 45.23 1.94
427 430 7.334858 AGGGAACTTGCAAATTGAAAGTAAAA 58.665 30.769 18.84 0.00 45.23 1.52
428 431 6.883744 AGGGAACTTGCAAATTGAAAGTAAA 58.116 32.000 18.84 0.00 45.23 2.01
429 432 6.478512 AGGGAACTTGCAAATTGAAAGTAA 57.521 33.333 18.84 0.00 45.23 2.24
430 433 6.775629 ACTAGGGAACTTGCAAATTGAAAGTA 59.224 34.615 18.84 3.25 45.23 2.24
432 435 6.089249 ACTAGGGAACTTGCAAATTGAAAG 57.911 37.500 12.00 12.00 43.67 2.62
433 436 6.462347 GGAACTAGGGAACTTGCAAATTGAAA 60.462 38.462 0.00 0.00 43.67 2.69
434 437 5.010617 GGAACTAGGGAACTTGCAAATTGAA 59.989 40.000 0.00 0.00 43.67 2.69
435 438 4.522789 GGAACTAGGGAACTTGCAAATTGA 59.477 41.667 0.00 0.00 43.67 2.57
436 439 4.280677 TGGAACTAGGGAACTTGCAAATTG 59.719 41.667 0.00 0.00 43.67 2.32
437 440 4.479158 TGGAACTAGGGAACTTGCAAATT 58.521 39.130 0.00 0.00 43.67 1.82
438 441 4.112634 TGGAACTAGGGAACTTGCAAAT 57.887 40.909 0.00 0.00 43.67 2.32
439 442 3.586470 TGGAACTAGGGAACTTGCAAA 57.414 42.857 0.00 0.00 43.67 3.68
440 443 3.806949 ATGGAACTAGGGAACTTGCAA 57.193 42.857 0.00 0.00 43.67 4.08
441 444 4.721776 AGATATGGAACTAGGGAACTTGCA 59.278 41.667 0.00 0.00 43.67 4.08
442 445 5.059833 CAGATATGGAACTAGGGAACTTGC 58.940 45.833 0.00 0.00 43.67 4.01
443 446 5.059833 GCAGATATGGAACTAGGGAACTTG 58.940 45.833 0.00 0.00 43.67 3.16
444 447 4.721776 TGCAGATATGGAACTAGGGAACTT 59.278 41.667 0.00 0.00 43.67 2.66
446 449 4.689612 TGCAGATATGGAACTAGGGAAC 57.310 45.455 0.00 0.00 0.00 3.62
447 450 5.248477 GGTATGCAGATATGGAACTAGGGAA 59.752 44.000 0.00 0.00 0.00 3.97
448 451 4.777896 GGTATGCAGATATGGAACTAGGGA 59.222 45.833 0.00 0.00 0.00 4.20
449 452 4.532126 TGGTATGCAGATATGGAACTAGGG 59.468 45.833 0.00 0.00 0.00 3.53
450 453 5.247110 ACTGGTATGCAGATATGGAACTAGG 59.753 44.000 0.00 0.00 0.00 3.02
451 454 6.352016 ACTGGTATGCAGATATGGAACTAG 57.648 41.667 0.00 6.20 0.00 2.57
452 455 6.239600 GGAACTGGTATGCAGATATGGAACTA 60.240 42.308 0.00 0.00 0.00 2.24
453 456 5.455326 GGAACTGGTATGCAGATATGGAACT 60.455 44.000 0.00 0.00 0.00 3.01
454 457 4.757149 GGAACTGGTATGCAGATATGGAAC 59.243 45.833 0.00 0.00 0.00 3.62
455 458 4.202461 GGGAACTGGTATGCAGATATGGAA 60.202 45.833 0.00 0.00 0.00 3.53
456 459 3.327757 GGGAACTGGTATGCAGATATGGA 59.672 47.826 0.00 0.00 0.00 3.41
457 460 3.328931 AGGGAACTGGTATGCAGATATGG 59.671 47.826 0.00 0.00 41.13 2.74
458 461 4.630644 AGGGAACTGGTATGCAGATATG 57.369 45.455 0.00 0.00 41.13 1.78
459 462 6.959606 AATAGGGAACTGGTATGCAGATAT 57.040 37.500 0.00 0.00 43.88 1.63
460 463 6.763715 AAATAGGGAACTGGTATGCAGATA 57.236 37.500 0.00 0.00 43.88 1.98
461 464 5.653255 AAATAGGGAACTGGTATGCAGAT 57.347 39.130 0.00 0.00 43.88 2.90
462 465 5.427157 TGTAAATAGGGAACTGGTATGCAGA 59.573 40.000 0.00 0.00 43.88 4.26
463 466 5.680619 TGTAAATAGGGAACTGGTATGCAG 58.319 41.667 0.00 0.00 43.88 4.41
464 467 5.702065 TGTAAATAGGGAACTGGTATGCA 57.298 39.130 0.00 0.00 43.88 3.96
465 468 6.120220 ACTTGTAAATAGGGAACTGGTATGC 58.880 40.000 0.00 0.00 43.88 3.14
466 469 7.565680 AGACTTGTAAATAGGGAACTGGTATG 58.434 38.462 0.00 0.00 43.88 2.39
467 470 7.750947 AGACTTGTAAATAGGGAACTGGTAT 57.249 36.000 0.00 0.00 43.88 2.73
468 471 8.117956 TCTAGACTTGTAAATAGGGAACTGGTA 58.882 37.037 0.00 0.00 43.88 3.25
469 472 6.958192 TCTAGACTTGTAAATAGGGAACTGGT 59.042 38.462 0.00 0.00 43.88 4.00
470 473 7.342284 TCTCTAGACTTGTAAATAGGGAACTGG 59.658 40.741 0.00 0.00 43.88 4.00
471 474 8.294954 TCTCTAGACTTGTAAATAGGGAACTG 57.705 38.462 0.00 0.00 43.88 3.16
473 476 7.147880 TGCTCTCTAGACTTGTAAATAGGGAAC 60.148 40.741 0.00 0.00 0.00 3.62
474 477 6.895756 TGCTCTCTAGACTTGTAAATAGGGAA 59.104 38.462 0.00 0.00 0.00 3.97
475 478 6.432581 TGCTCTCTAGACTTGTAAATAGGGA 58.567 40.000 0.00 0.00 0.00 4.20
476 479 6.716934 TGCTCTCTAGACTTGTAAATAGGG 57.283 41.667 0.00 0.00 0.00 3.53
477 480 8.254508 AGTTTGCTCTCTAGACTTGTAAATAGG 58.745 37.037 0.00 0.00 0.00 2.57
481 484 9.998106 AAATAGTTTGCTCTCTAGACTTGTAAA 57.002 29.630 0.00 0.00 0.00 2.01
482 485 9.998106 AAAATAGTTTGCTCTCTAGACTTGTAA 57.002 29.630 0.00 0.00 0.00 2.41
483 486 9.424319 CAAAATAGTTTGCTCTCTAGACTTGTA 57.576 33.333 2.29 0.00 37.89 2.41
484 487 7.934120 ACAAAATAGTTTGCTCTCTAGACTTGT 59.066 33.333 15.16 0.00 46.84 3.16
485 488 8.316640 ACAAAATAGTTTGCTCTCTAGACTTG 57.683 34.615 15.16 0.00 46.84 3.16
486 489 8.778358 CAACAAAATAGTTTGCTCTCTAGACTT 58.222 33.333 15.16 0.00 46.84 3.01
487 490 7.934120 ACAACAAAATAGTTTGCTCTCTAGACT 59.066 33.333 15.16 0.00 46.84 3.24
488 491 8.089115 ACAACAAAATAGTTTGCTCTCTAGAC 57.911 34.615 15.16 0.00 46.84 2.59
489 492 8.677148 AACAACAAAATAGTTTGCTCTCTAGA 57.323 30.769 15.16 0.00 46.84 2.43
492 495 9.683069 CATAAACAACAAAATAGTTTGCTCTCT 57.317 29.630 15.16 1.25 46.84 3.10
493 496 9.463443 ACATAAACAACAAAATAGTTTGCTCTC 57.537 29.630 15.16 0.00 46.84 3.20
500 503 9.855021 GCCATCTACATAAACAACAAAATAGTT 57.145 29.630 0.00 0.00 0.00 2.24
501 504 9.019656 TGCCATCTACATAAACAACAAAATAGT 57.980 29.630 0.00 0.00 0.00 2.12
502 505 9.507280 CTGCCATCTACATAAACAACAAAATAG 57.493 33.333 0.00 0.00 0.00 1.73
503 506 7.973388 GCTGCCATCTACATAAACAACAAAATA 59.027 33.333 0.00 0.00 0.00 1.40
504 507 6.813152 GCTGCCATCTACATAAACAACAAAAT 59.187 34.615 0.00 0.00 0.00 1.82
505 508 6.155827 GCTGCCATCTACATAAACAACAAAA 58.844 36.000 0.00 0.00 0.00 2.44
506 509 5.336372 GGCTGCCATCTACATAAACAACAAA 60.336 40.000 15.17 0.00 0.00 2.83
507 510 4.157656 GGCTGCCATCTACATAAACAACAA 59.842 41.667 15.17 0.00 0.00 2.83
508 511 3.694072 GGCTGCCATCTACATAAACAACA 59.306 43.478 15.17 0.00 0.00 3.33
509 512 3.694072 TGGCTGCCATCTACATAAACAAC 59.306 43.478 19.30 0.00 0.00 3.32
510 513 3.961849 TGGCTGCCATCTACATAAACAA 58.038 40.909 19.30 0.00 0.00 2.83
511 514 3.643199 TGGCTGCCATCTACATAAACA 57.357 42.857 19.30 0.00 0.00 2.83
512 515 3.254166 CCATGGCTGCCATCTACATAAAC 59.746 47.826 30.49 0.00 43.15 2.01
513 516 3.489355 CCATGGCTGCCATCTACATAAA 58.511 45.455 30.49 0.20 43.15 1.40
514 517 2.815215 GCCATGGCTGCCATCTACATAA 60.815 50.000 30.49 1.04 43.15 1.90
515 518 1.271543 GCCATGGCTGCCATCTACATA 60.272 52.381 30.49 1.87 43.15 2.29
516 519 0.538977 GCCATGGCTGCCATCTACAT 60.539 55.000 30.49 7.89 43.15 2.29
517 520 1.152902 GCCATGGCTGCCATCTACA 60.153 57.895 30.49 3.56 43.15 2.74
518 521 3.755434 GCCATGGCTGCCATCTAC 58.245 61.111 30.49 18.48 43.15 2.59
528 531 0.529378 CAGTTGGAAGAAGCCATGGC 59.471 55.000 30.12 30.12 37.86 4.40
529 532 0.529378 GCAGTTGGAAGAAGCCATGG 59.471 55.000 7.63 7.63 37.86 3.66
530 533 0.169672 CGCAGTTGGAAGAAGCCATG 59.830 55.000 0.00 0.00 37.86 3.66
531 534 0.250901 ACGCAGTTGGAAGAAGCCAT 60.251 50.000 0.00 0.00 37.78 4.40
532 535 1.148273 ACGCAGTTGGAAGAAGCCA 59.852 52.632 0.00 0.00 37.78 4.75
533 536 4.065110 ACGCAGTTGGAAGAAGCC 57.935 55.556 0.00 0.00 37.78 4.35
545 548 0.443869 ACGCAAAGCAGATAACGCAG 59.556 50.000 0.00 0.00 0.00 5.18
546 549 0.165727 CACGCAAAGCAGATAACGCA 59.834 50.000 0.00 0.00 0.00 5.24
547 550 0.165944 ACACGCAAAGCAGATAACGC 59.834 50.000 0.00 0.00 0.00 4.84
548 551 1.464023 CCACACGCAAAGCAGATAACG 60.464 52.381 0.00 0.00 0.00 3.18
549 552 1.804151 TCCACACGCAAAGCAGATAAC 59.196 47.619 0.00 0.00 0.00 1.89
550 553 2.076100 CTCCACACGCAAAGCAGATAA 58.924 47.619 0.00 0.00 0.00 1.75
551 554 1.001974 ACTCCACACGCAAAGCAGATA 59.998 47.619 0.00 0.00 0.00 1.98
552 555 0.250467 ACTCCACACGCAAAGCAGAT 60.250 50.000 0.00 0.00 0.00 2.90
553 556 0.391228 TACTCCACACGCAAAGCAGA 59.609 50.000 0.00 0.00 0.00 4.26
554 557 1.069906 GTTACTCCACACGCAAAGCAG 60.070 52.381 0.00 0.00 0.00 4.24
555 558 0.941542 GTTACTCCACACGCAAAGCA 59.058 50.000 0.00 0.00 0.00 3.91
556 559 0.941542 TGTTACTCCACACGCAAAGC 59.058 50.000 0.00 0.00 0.00 3.51
557 560 2.663279 GTGTTACTCCACACGCAAAG 57.337 50.000 0.00 0.00 37.90 2.77
563 566 5.065988 ACAACATGAAAGTGTTACTCCACAC 59.934 40.000 0.00 0.00 46.48 3.82
564 567 5.065859 CACAACATGAAAGTGTTACTCCACA 59.934 40.000 0.00 0.00 40.17 4.17
565 568 5.065988 ACACAACATGAAAGTGTTACTCCAC 59.934 40.000 13.86 0.00 43.40 4.02
566 569 5.189928 ACACAACATGAAAGTGTTACTCCA 58.810 37.500 13.86 0.00 43.40 3.86
567 570 5.295787 TGACACAACATGAAAGTGTTACTCC 59.704 40.000 18.36 9.71 45.65 3.85
568 571 6.358118 TGACACAACATGAAAGTGTTACTC 57.642 37.500 18.36 9.96 45.65 2.59
569 572 6.150307 TGTTGACACAACATGAAAGTGTTACT 59.850 34.615 18.36 2.33 45.65 2.24
570 573 6.318628 TGTTGACACAACATGAAAGTGTTAC 58.681 36.000 18.36 18.04 45.65 2.50
571 574 6.404184 CCTGTTGACACAACATGAAAGTGTTA 60.404 38.462 15.83 13.83 45.65 2.41
572 575 5.384063 TGTTGACACAACATGAAAGTGTT 57.616 34.783 18.36 7.46 45.65 3.32
574 577 4.096231 TCCTGTTGACACAACATGAAAGTG 59.904 41.667 15.83 7.53 39.12 3.16
575 578 4.096382 GTCCTGTTGACACAACATGAAAGT 59.904 41.667 18.44 0.00 43.85 2.66
576 579 4.601019 GTCCTGTTGACACAACATGAAAG 58.399 43.478 18.44 8.29 43.85 2.62
577 580 4.630894 GTCCTGTTGACACAACATGAAA 57.369 40.909 18.44 4.97 43.85 2.69
588 591 0.171903 GCATGCCATGTCCTGTTGAC 59.828 55.000 6.36 0.00 44.72 3.18
589 592 0.251253 TGCATGCCATGTCCTGTTGA 60.251 50.000 16.68 0.00 0.00 3.18
590 593 0.821517 ATGCATGCCATGTCCTGTTG 59.178 50.000 16.68 0.00 31.48 3.33
591 594 1.563924 AATGCATGCCATGTCCTGTT 58.436 45.000 16.68 0.00 33.49 3.16
592 595 2.304092 CTAATGCATGCCATGTCCTGT 58.696 47.619 16.68 0.00 33.49 4.00
593 596 2.304092 ACTAATGCATGCCATGTCCTG 58.696 47.619 16.68 0.00 33.49 3.86
594 597 2.742428 ACTAATGCATGCCATGTCCT 57.258 45.000 16.68 0.00 33.49 3.85
595 598 6.127810 CATATACTAATGCATGCCATGTCC 57.872 41.667 16.68 0.00 33.49 4.02
617 620 9.341078 TGTCTATCTTATTATTGCTTGATTGCA 57.659 29.630 0.00 0.00 41.65 4.08
618 621 9.604626 GTGTCTATCTTATTATTGCTTGATTGC 57.395 33.333 0.00 0.00 0.00 3.56
619 622 9.803130 CGTGTCTATCTTATTATTGCTTGATTG 57.197 33.333 0.00 0.00 0.00 2.67
620 623 8.993121 CCGTGTCTATCTTATTATTGCTTGATT 58.007 33.333 0.00 0.00 0.00 2.57
621 624 8.367911 TCCGTGTCTATCTTATTATTGCTTGAT 58.632 33.333 0.00 0.00 0.00 2.57
622 625 7.722363 TCCGTGTCTATCTTATTATTGCTTGA 58.278 34.615 0.00 0.00 0.00 3.02
623 626 7.867909 TCTCCGTGTCTATCTTATTATTGCTTG 59.132 37.037 0.00 0.00 0.00 4.01
624 627 7.952671 TCTCCGTGTCTATCTTATTATTGCTT 58.047 34.615 0.00 0.00 0.00 3.91
625 628 7.526142 TCTCCGTGTCTATCTTATTATTGCT 57.474 36.000 0.00 0.00 0.00 3.91
626 629 6.309251 GCTCTCCGTGTCTATCTTATTATTGC 59.691 42.308 0.00 0.00 0.00 3.56
627 630 6.524933 CGCTCTCCGTGTCTATCTTATTATTG 59.475 42.308 0.00 0.00 0.00 1.90
628 631 6.349445 CCGCTCTCCGTGTCTATCTTATTATT 60.349 42.308 0.00 0.00 34.38 1.40
629 632 5.124138 CCGCTCTCCGTGTCTATCTTATTAT 59.876 44.000 0.00 0.00 34.38 1.28
630 633 4.454847 CCGCTCTCCGTGTCTATCTTATTA 59.545 45.833 0.00 0.00 34.38 0.98
631 634 3.253677 CCGCTCTCCGTGTCTATCTTATT 59.746 47.826 0.00 0.00 34.38 1.40
632 635 2.814919 CCGCTCTCCGTGTCTATCTTAT 59.185 50.000 0.00 0.00 34.38 1.73
633 636 2.219458 CCGCTCTCCGTGTCTATCTTA 58.781 52.381 0.00 0.00 34.38 2.10
634 637 1.025812 CCGCTCTCCGTGTCTATCTT 58.974 55.000 0.00 0.00 34.38 2.40
635 638 1.448922 GCCGCTCTCCGTGTCTATCT 61.449 60.000 0.00 0.00 34.38 1.98
636 639 1.008309 GCCGCTCTCCGTGTCTATC 60.008 63.158 0.00 0.00 34.38 2.08
637 640 2.835705 CGCCGCTCTCCGTGTCTAT 61.836 63.158 0.00 0.00 34.38 1.98
638 641 3.506096 CGCCGCTCTCCGTGTCTA 61.506 66.667 0.00 0.00 34.38 2.59
640 643 4.194720 ATCGCCGCTCTCCGTGTC 62.195 66.667 0.00 0.00 34.38 3.67
641 644 4.498520 CATCGCCGCTCTCCGTGT 62.499 66.667 0.00 0.00 34.38 4.49
1048 1471 2.014857 CTGAAGGTATCTGTCGACGGA 58.985 52.381 28.31 28.31 35.43 4.69
1360 1810 3.840666 AGTTGATACCTCTTTCTCCAGCA 59.159 43.478 0.00 0.00 0.00 4.41
1435 1958 2.414559 CGTTCAGAGCCATGCGATTTTT 60.415 45.455 0.00 0.00 0.00 1.94
1788 2318 6.595326 TCTTGCATACATTTTGTTCTCTCGAT 59.405 34.615 0.00 0.00 0.00 3.59
1911 2465 3.435327 TCGCAACCAACAATACATGAGTC 59.565 43.478 0.00 0.00 0.00 3.36
1954 2511 5.180271 AGACCGTGTGTTACTTCTTTTTGA 58.820 37.500 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.