Multiple sequence alignment - TraesCS5A01G310200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G310200 chr5A 100.000 2639 0 0 1 2639 522103268 522105906 0.000000e+00 4874.0
1 TraesCS5A01G310200 chr5A 86.593 634 80 4 1006 1638 522425265 522425894 0.000000e+00 695.0
2 TraesCS5A01G310200 chr5A 90.441 408 37 2 1004 1410 522082765 522083171 1.070000e-148 536.0
3 TraesCS5A01G310200 chr5A 94.595 37 1 1 154 190 512828702 512828737 3.670000e-04 56.5
4 TraesCS5A01G310200 chr5D 90.916 1343 68 24 370 1705 410538583 410539878 0.000000e+00 1755.0
5 TraesCS5A01G310200 chr5D 85.686 510 67 4 1132 1638 410679449 410679955 1.390000e-147 532.0
6 TraesCS5A01G310200 chr5D 89.541 392 41 0 1004 1395 410620355 410620746 5.070000e-137 497.0
7 TraesCS5A01G310200 chr5D 84.720 517 49 9 2127 2639 410539909 410540399 8.490000e-135 490.0
8 TraesCS5A01G310200 chr5D 86.779 416 35 5 1376 1775 84788199 84788610 1.860000e-121 446.0
9 TraesCS5A01G310200 chr5D 87.048 332 33 5 1774 2100 12607904 12608230 1.490000e-97 366.0
10 TraesCS5A01G310200 chr5D 97.059 68 2 0 68 135 410537720 410537787 5.970000e-22 115.0
11 TraesCS5A01G310200 chr5D 95.000 60 3 0 2 61 410537676 410537735 7.780000e-16 95.3
12 TraesCS5A01G310200 chr5D 94.595 37 1 1 154 190 407524608 407524643 3.670000e-04 56.5
13 TraesCS5A01G310200 chr5B 91.282 585 24 6 791 1367 492798563 492799128 0.000000e+00 773.0
14 TraesCS5A01G310200 chr5B 87.040 625 73 7 1017 1638 493140590 493141209 0.000000e+00 699.0
15 TraesCS5A01G310200 chr5B 85.470 585 50 21 216 794 492787316 492787871 6.330000e-161 577.0
16 TraesCS5A01G310200 chr5B 90.152 396 37 2 1006 1400 492782525 492782919 5.040000e-142 514.0
17 TraesCS5A01G310200 chr5B 92.174 230 15 2 2099 2325 492813143 492813372 3.280000e-84 322.0
18 TraesCS5A01G310200 chr5B 98.551 69 1 0 68 136 492786744 492786812 3.570000e-24 122.0
19 TraesCS5A01G310200 chr1B 86.730 633 79 4 1013 1644 562433805 562433177 0.000000e+00 699.0
20 TraesCS5A01G310200 chr6A 89.524 420 36 4 1355 1770 36027996 36027581 2.330000e-145 525.0
21 TraesCS5A01G310200 chr7B 88.837 430 35 6 1355 1775 624549207 624548782 1.400000e-142 516.0
22 TraesCS5A01G310200 chr7B 84.578 415 43 6 1378 1775 454620334 454619924 2.460000e-105 392.0
23 TraesCS5A01G310200 chr7B 88.636 308 24 6 1798 2100 393855181 393854880 5.370000e-97 364.0
24 TraesCS5A01G310200 chr2D 87.246 345 31 9 1767 2104 197394477 197394139 5.330000e-102 381.0
25 TraesCS5A01G310200 chr2D 86.826 334 34 6 1772 2100 474177622 474177294 5.370000e-97 364.0
26 TraesCS5A01G310200 chr4D 87.349 332 32 6 1774 2100 235797089 235796763 3.210000e-99 372.0
27 TraesCS5A01G310200 chr3A 87.423 326 35 4 1781 2102 746185604 746185281 1.150000e-98 370.0
28 TraesCS5A01G310200 chr4B 87.087 333 33 4 1773 2100 330786598 330786925 4.150000e-98 368.0
29 TraesCS5A01G310200 chr6D 86.269 335 36 5 1774 2103 256170883 256170554 3.230000e-94 355.0
30 TraesCS5A01G310200 chr3D 85.841 339 36 9 1774 2107 9209993 9210324 1.500000e-92 350.0
31 TraesCS5A01G310200 chr4A 100.000 29 0 0 158 186 566288161 566288133 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G310200 chr5A 522103268 522105906 2638 False 4874.000000 4874 100.00000 1 2639 1 chr5A.!!$F3 2638
1 TraesCS5A01G310200 chr5A 522425265 522425894 629 False 695.000000 695 86.59300 1006 1638 1 chr5A.!!$F4 632
2 TraesCS5A01G310200 chr5D 410537676 410540399 2723 False 613.825000 1755 91.92375 2 2639 4 chr5D.!!$F6 2637
3 TraesCS5A01G310200 chr5D 410679449 410679955 506 False 532.000000 532 85.68600 1132 1638 1 chr5D.!!$F5 506
4 TraesCS5A01G310200 chr5B 492798563 492799128 565 False 773.000000 773 91.28200 791 1367 1 chr5B.!!$F1 576
5 TraesCS5A01G310200 chr5B 493140590 493141209 619 False 699.000000 699 87.04000 1017 1638 1 chr5B.!!$F3 621
6 TraesCS5A01G310200 chr5B 492782525 492787871 5346 False 404.333333 577 91.39100 68 1400 3 chr5B.!!$F4 1332
7 TraesCS5A01G310200 chr1B 562433177 562433805 628 True 699.000000 699 86.73000 1013 1644 1 chr1B.!!$R1 631

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
52 53 0.470080 CCGGCCCTCTCCATCTTAGA 60.470 60.0 0.0 0.0 0.00 2.10 F
1015 1674 0.387202 CTAGATGCCGTCTGGTCAGG 59.613 60.0 0.0 0.0 37.83 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1495 2369 2.568090 CATGCCGCCAAACCACTC 59.432 61.111 0.0 0.0 0.0 3.51 R
2079 2974 0.117742 ACTCCCTCCTTCCCGGTTTA 59.882 55.000 0.0 0.0 0.0 2.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 2.112815 GTGCACTTATCACCCCGGC 61.113 63.158 10.32 0.00 0.00 6.13
48 49 4.888325 CCCCGGCCCTCTCCATCT 62.888 72.222 0.00 0.00 0.00 2.90
49 50 2.770048 CCCGGCCCTCTCCATCTT 60.770 66.667 0.00 0.00 0.00 2.40
50 51 1.459539 CCCGGCCCTCTCCATCTTA 60.460 63.158 0.00 0.00 0.00 2.10
51 52 1.476007 CCCGGCCCTCTCCATCTTAG 61.476 65.000 0.00 0.00 0.00 2.18
52 53 0.470080 CCGGCCCTCTCCATCTTAGA 60.470 60.000 0.00 0.00 0.00 2.10
53 54 1.638529 CGGCCCTCTCCATCTTAGAT 58.361 55.000 0.00 0.00 0.00 1.98
54 55 1.974236 CGGCCCTCTCCATCTTAGATT 59.026 52.381 0.00 0.00 0.00 2.40
55 56 3.165875 CGGCCCTCTCCATCTTAGATTA 58.834 50.000 0.00 0.00 0.00 1.75
56 57 3.578716 CGGCCCTCTCCATCTTAGATTAA 59.421 47.826 0.00 0.00 0.00 1.40
57 58 4.223923 CGGCCCTCTCCATCTTAGATTAAT 59.776 45.833 0.00 0.00 0.00 1.40
58 59 5.625656 CGGCCCTCTCCATCTTAGATTAATC 60.626 48.000 7.41 7.41 0.00 1.75
59 60 5.249393 GGCCCTCTCCATCTTAGATTAATCA 59.751 44.000 17.56 1.25 0.00 2.57
60 61 6.069731 GGCCCTCTCCATCTTAGATTAATCAT 60.070 42.308 17.56 5.59 0.00 2.45
61 62 7.126421 GGCCCTCTCCATCTTAGATTAATCATA 59.874 40.741 17.56 4.07 0.00 2.15
62 63 8.203485 GCCCTCTCCATCTTAGATTAATCATAG 58.797 40.741 17.56 12.96 0.00 2.23
63 64 9.486123 CCCTCTCCATCTTAGATTAATCATAGA 57.514 37.037 17.56 17.20 0.00 1.98
118 119 0.607217 TGACAGGCTGGCAAGTGATG 60.607 55.000 23.41 0.00 28.38 3.07
127 128 3.264574 GCAAGTGATGTGCCCCTTA 57.735 52.632 0.00 0.00 35.91 2.69
135 136 3.453353 GTGATGTGCCCCTTAAGGTAGTA 59.547 47.826 20.22 8.02 0.00 1.82
136 137 3.453353 TGATGTGCCCCTTAAGGTAGTAC 59.547 47.826 20.22 18.77 0.00 2.73
138 139 3.102204 TGTGCCCCTTAAGGTAGTACTC 58.898 50.000 20.22 6.26 0.00 2.59
140 141 2.045524 GCCCCTTAAGGTAGTACTCCC 58.954 57.143 20.22 0.00 0.00 4.30
141 142 2.360101 GCCCCTTAAGGTAGTACTCCCT 60.360 54.545 20.22 0.11 0.00 4.20
142 143 3.574749 CCCCTTAAGGTAGTACTCCCTC 58.425 54.545 20.22 0.00 0.00 4.30
143 144 3.220940 CCCTTAAGGTAGTACTCCCTCG 58.779 54.545 20.22 0.00 0.00 4.63
144 145 3.117738 CCCTTAAGGTAGTACTCCCTCGA 60.118 52.174 20.22 0.00 0.00 4.04
145 146 4.530875 CCTTAAGGTAGTACTCCCTCGAA 58.469 47.826 13.83 4.76 0.00 3.71
146 147 4.579753 CCTTAAGGTAGTACTCCCTCGAAG 59.420 50.000 13.83 13.24 0.00 3.79
147 148 3.735720 AAGGTAGTACTCCCTCGAAGT 57.264 47.619 7.57 0.00 0.00 3.01
148 149 3.735720 AGGTAGTACTCCCTCGAAGTT 57.264 47.619 0.11 0.00 0.00 2.66
149 150 4.851639 AGGTAGTACTCCCTCGAAGTTA 57.148 45.455 0.11 0.00 0.00 2.24
150 151 5.184892 AGGTAGTACTCCCTCGAAGTTAA 57.815 43.478 0.11 0.00 0.00 2.01
151 152 5.574188 AGGTAGTACTCCCTCGAAGTTAAA 58.426 41.667 0.11 0.00 0.00 1.52
152 153 6.012745 AGGTAGTACTCCCTCGAAGTTAAAA 58.987 40.000 0.11 0.00 0.00 1.52
153 154 6.494835 AGGTAGTACTCCCTCGAAGTTAAAAA 59.505 38.462 0.11 0.00 0.00 1.94
154 155 6.587990 GGTAGTACTCCCTCGAAGTTAAAAAC 59.412 42.308 0.00 0.00 0.00 2.43
155 156 6.165700 AGTACTCCCTCGAAGTTAAAAACA 57.834 37.500 0.00 0.00 0.00 2.83
156 157 5.987953 AGTACTCCCTCGAAGTTAAAAACAC 59.012 40.000 0.00 0.00 0.00 3.32
157 158 5.032327 ACTCCCTCGAAGTTAAAAACACT 57.968 39.130 0.00 0.00 0.00 3.55
158 159 5.055144 ACTCCCTCGAAGTTAAAAACACTC 58.945 41.667 0.00 0.00 0.00 3.51
159 160 5.163332 ACTCCCTCGAAGTTAAAAACACTCT 60.163 40.000 0.00 0.00 0.00 3.24
160 161 5.677567 TCCCTCGAAGTTAAAAACACTCTT 58.322 37.500 0.00 0.00 0.00 2.85
161 162 6.819284 TCCCTCGAAGTTAAAAACACTCTTA 58.181 36.000 0.00 0.00 0.00 2.10
162 163 7.447594 TCCCTCGAAGTTAAAAACACTCTTAT 58.552 34.615 0.00 0.00 0.00 1.73
163 164 8.587608 TCCCTCGAAGTTAAAAACACTCTTATA 58.412 33.333 0.00 0.00 0.00 0.98
164 165 9.379791 CCCTCGAAGTTAAAAACACTCTTATAT 57.620 33.333 0.00 0.00 0.00 0.86
192 193 5.715753 GGGACGGATGGAGTAGTAGATATTT 59.284 44.000 0.00 0.00 0.00 1.40
240 895 8.477419 AAAAATTGGGTCTTGTCTTTCTGATA 57.523 30.769 0.00 0.00 0.00 2.15
269 924 7.620880 TCCTTAGAAGAAAAGGATGAATCGAA 58.379 34.615 0.43 0.00 45.97 3.71
270 925 8.100791 TCCTTAGAAGAAAAGGATGAATCGAAA 58.899 33.333 0.43 0.00 45.97 3.46
271 926 8.178313 CCTTAGAAGAAAAGGATGAATCGAAAC 58.822 37.037 0.00 0.00 45.41 2.78
274 929 8.115490 AGAAGAAAAGGATGAATCGAAACATT 57.885 30.769 8.64 0.00 0.00 2.71
278 933 3.270027 AGGATGAATCGAAACATTGCGA 58.730 40.909 0.00 0.00 41.14 5.10
279 934 3.063997 AGGATGAATCGAAACATTGCGAC 59.936 43.478 0.00 0.00 39.56 5.19
280 935 3.063997 GGATGAATCGAAACATTGCGACT 59.936 43.478 0.00 0.00 39.56 4.18
281 936 4.270084 GGATGAATCGAAACATTGCGACTA 59.730 41.667 0.00 0.00 39.56 2.59
282 937 4.577687 TGAATCGAAACATTGCGACTAC 57.422 40.909 0.00 0.00 39.56 2.73
287 942 1.195900 GAAACATTGCGACTACGGCAA 59.804 47.619 1.37 1.37 38.78 4.52
295 950 1.349259 CGACTACGGCAAAACTCGGG 61.349 60.000 0.00 0.00 35.72 5.14
297 952 0.611714 ACTACGGCAAAACTCGGGAT 59.388 50.000 0.00 0.00 0.00 3.85
300 955 2.188062 ACGGCAAAACTCGGGATAAA 57.812 45.000 0.00 0.00 0.00 1.40
302 957 2.081462 CGGCAAAACTCGGGATAAAGT 58.919 47.619 0.00 0.00 0.00 2.66
334 989 9.518906 TGTGGTTGTATTACGTATACTTACATG 57.481 33.333 0.00 0.00 39.91 3.21
335 990 9.520204 GTGGTTGTATTACGTATACTTACATGT 57.480 33.333 2.69 2.69 39.91 3.21
340 995 9.022915 TGTATTACGTATACTTACATGTTGTGC 57.977 33.333 2.30 0.00 39.91 4.57
341 996 9.022915 GTATTACGTATACTTACATGTTGTGCA 57.977 33.333 2.30 0.00 36.88 4.57
342 997 7.886405 TTACGTATACTTACATGTTGTGCAA 57.114 32.000 2.30 0.00 0.00 4.08
343 998 6.978343 ACGTATACTTACATGTTGTGCAAT 57.022 33.333 2.30 0.00 0.00 3.56
344 999 6.771076 ACGTATACTTACATGTTGTGCAATG 58.229 36.000 2.30 0.00 0.00 2.82
345 1000 6.183360 ACGTATACTTACATGTTGTGCAATGG 60.183 38.462 2.30 0.00 0.00 3.16
346 1001 3.940209 ACTTACATGTTGTGCAATGGG 57.060 42.857 2.30 0.00 0.00 4.00
347 1002 3.230134 ACTTACATGTTGTGCAATGGGT 58.770 40.909 2.30 0.00 0.00 4.51
348 1003 4.402829 ACTTACATGTTGTGCAATGGGTA 58.597 39.130 2.30 0.00 0.00 3.69
349 1004 4.217550 ACTTACATGTTGTGCAATGGGTAC 59.782 41.667 2.30 0.00 0.00 3.34
350 1005 2.591923 ACATGTTGTGCAATGGGTACA 58.408 42.857 0.00 0.00 40.56 2.90
351 1006 3.164268 ACATGTTGTGCAATGGGTACAT 58.836 40.909 0.00 0.00 41.91 2.29
352 1007 3.193267 ACATGTTGTGCAATGGGTACATC 59.807 43.478 0.00 0.00 41.91 3.06
353 1008 2.868899 TGTTGTGCAATGGGTACATCA 58.131 42.857 0.00 0.00 41.91 3.07
354 1009 3.429492 TGTTGTGCAATGGGTACATCAT 58.571 40.909 0.00 0.00 41.91 2.45
355 1010 3.831333 TGTTGTGCAATGGGTACATCATT 59.169 39.130 7.57 7.57 41.91 2.57
356 1011 4.082300 TGTTGTGCAATGGGTACATCATTC 60.082 41.667 9.75 6.99 41.91 2.67
357 1012 3.694926 TGTGCAATGGGTACATCATTCA 58.305 40.909 9.75 8.77 37.18 2.57
358 1013 4.279982 TGTGCAATGGGTACATCATTCAT 58.720 39.130 9.75 0.00 37.18 2.57
359 1014 4.338964 TGTGCAATGGGTACATCATTCATC 59.661 41.667 9.75 5.00 37.18 2.92
360 1015 3.890756 TGCAATGGGTACATCATTCATCC 59.109 43.478 9.75 0.00 35.94 3.51
361 1016 3.058016 GCAATGGGTACATCATTCATCCG 60.058 47.826 9.75 2.55 35.94 4.18
362 1017 2.928801 TGGGTACATCATTCATCCGG 57.071 50.000 0.00 0.00 0.00 5.14
363 1018 1.419762 TGGGTACATCATTCATCCGGG 59.580 52.381 0.00 0.00 0.00 5.73
364 1019 1.420138 GGGTACATCATTCATCCGGGT 59.580 52.381 0.00 0.00 0.00 5.28
365 1020 2.158667 GGGTACATCATTCATCCGGGTT 60.159 50.000 0.00 0.00 0.00 4.11
366 1021 3.551846 GGTACATCATTCATCCGGGTTT 58.448 45.455 0.00 0.00 0.00 3.27
367 1022 4.445162 GGGTACATCATTCATCCGGGTTTA 60.445 45.833 0.00 0.00 0.00 2.01
368 1023 5.313712 GGTACATCATTCATCCGGGTTTAT 58.686 41.667 0.00 0.00 0.00 1.40
376 1031 7.343357 TCATTCATCCGGGTTTATAAGTTTCT 58.657 34.615 0.00 0.00 0.00 2.52
402 1057 8.288217 TCATATTTTGCGTTAAACTTTTGACC 57.712 30.769 0.00 0.00 0.00 4.02
408 1063 6.969828 TGCGTTAAACTTTTGACCAAAAAT 57.030 29.167 8.94 0.00 39.49 1.82
428 1083 7.881775 AAAATTTGACTAGGAAGACACAAGT 57.118 32.000 0.00 0.00 0.00 3.16
541 1196 7.721286 ATAGAGCTATCTGAAAAATTGGACG 57.279 36.000 0.00 0.00 36.96 4.79
562 1217 5.652744 CGCAAGTTGTTAACTGAGTTACT 57.347 39.130 4.23 0.00 41.91 2.24
564 1219 6.578691 CGCAAGTTGTTAACTGAGTTACTAC 58.421 40.000 4.23 2.50 41.91 2.73
565 1220 6.346359 CGCAAGTTGTTAACTGAGTTACTACC 60.346 42.308 4.23 0.00 41.91 3.18
566 1221 6.480981 GCAAGTTGTTAACTGAGTTACTACCA 59.519 38.462 4.23 0.00 41.91 3.25
569 1224 9.452287 AAGTTGTTAACTGAGTTACTACCAAAA 57.548 29.630 4.23 0.00 41.91 2.44
570 1225 8.886719 AGTTGTTAACTGAGTTACTACCAAAAC 58.113 33.333 4.23 2.16 41.01 2.43
571 1226 8.667463 GTTGTTAACTGAGTTACTACCAAAACA 58.333 33.333 4.23 3.42 0.00 2.83
572 1227 8.789825 TGTTAACTGAGTTACTACCAAAACAA 57.210 30.769 4.23 0.00 0.00 2.83
573 1228 9.228949 TGTTAACTGAGTTACTACCAAAACAAA 57.771 29.630 4.23 0.00 0.00 2.83
574 1229 9.712359 GTTAACTGAGTTACTACCAAAACAAAG 57.288 33.333 4.23 0.00 0.00 2.77
578 1233 9.016438 ACTGAGTTACTACCAAAACAAAGAAAA 57.984 29.630 0.00 0.00 0.00 2.29
605 1260 3.000322 GCGTGAGTGGATATGAACGAAAG 60.000 47.826 0.00 0.00 33.03 2.62
611 1266 6.127451 TGAGTGGATATGAACGAAAGAGCTTA 60.127 38.462 0.00 0.00 0.00 3.09
614 1269 6.199342 GTGGATATGAACGAAAGAGCTTAGAC 59.801 42.308 0.00 0.00 0.00 2.59
615 1270 5.692654 GGATATGAACGAAAGAGCTTAGACC 59.307 44.000 0.00 0.00 0.00 3.85
616 1271 4.810191 ATGAACGAAAGAGCTTAGACCT 57.190 40.909 0.00 0.00 0.00 3.85
617 1272 4.602340 TGAACGAAAGAGCTTAGACCTT 57.398 40.909 0.00 0.00 0.00 3.50
620 1275 5.475909 TGAACGAAAGAGCTTAGACCTTAGA 59.524 40.000 0.00 0.00 0.00 2.10
621 1276 5.570234 ACGAAAGAGCTTAGACCTTAGAG 57.430 43.478 0.00 0.00 0.00 2.43
622 1277 4.399934 ACGAAAGAGCTTAGACCTTAGAGG 59.600 45.833 0.00 0.00 42.49 3.69
623 1278 4.641094 CGAAAGAGCTTAGACCTTAGAGGA 59.359 45.833 0.07 0.00 37.67 3.71
624 1279 5.220970 CGAAAGAGCTTAGACCTTAGAGGAG 60.221 48.000 0.07 0.00 37.67 3.69
625 1280 5.459982 AAGAGCTTAGACCTTAGAGGAGA 57.540 43.478 0.07 0.00 37.67 3.71
632 1287 2.787035 AGACCTTAGAGGAGAGGGGTAG 59.213 54.545 0.07 0.00 37.67 3.18
639 1294 1.211457 GAGGAGAGGGGTAGACGTGTA 59.789 57.143 0.00 0.00 0.00 2.90
760 1415 6.555315 CCAGTAATCATCCAACTAAACAAGC 58.445 40.000 0.00 0.00 0.00 4.01
761 1416 6.250819 CAGTAATCATCCAACTAAACAAGCG 58.749 40.000 0.00 0.00 0.00 4.68
767 1422 2.158871 TCCAACTAAACAAGCGGTGAGT 60.159 45.455 0.00 0.00 0.00 3.41
770 1425 2.914059 ACTAAACAAGCGGTGAGTGTT 58.086 42.857 0.00 0.00 37.07 3.32
830 1488 3.885521 GCGCCATGAAGCTGCCTC 61.886 66.667 0.00 0.00 0.00 4.70
866 1524 1.274447 GGTAACCACCTACGACTTGCT 59.726 52.381 0.00 0.00 42.11 3.91
887 1546 5.886474 TGCTTATATATACTCCCCGTCTCAG 59.114 44.000 0.00 0.00 0.00 3.35
912 1571 7.340487 AGTTCTCATTTTTCTCAGACAAAACCT 59.660 33.333 0.00 0.00 0.00 3.50
939 1598 4.599047 GATCCATCGATCAAACCTCTCT 57.401 45.455 0.00 0.00 43.87 3.10
984 1643 1.802960 CTCCACACTTACAAGCAGCAG 59.197 52.381 0.00 0.00 0.00 4.24
985 1644 1.416030 TCCACACTTACAAGCAGCAGA 59.584 47.619 0.00 0.00 0.00 4.26
986 1645 1.802960 CCACACTTACAAGCAGCAGAG 59.197 52.381 0.00 0.00 0.00 3.35
987 1646 2.548707 CCACACTTACAAGCAGCAGAGA 60.549 50.000 0.00 0.00 0.00 3.10
988 1647 3.332919 CACACTTACAAGCAGCAGAGAT 58.667 45.455 0.00 0.00 0.00 2.75
989 1648 3.370366 CACACTTACAAGCAGCAGAGATC 59.630 47.826 0.00 0.00 0.00 2.75
990 1649 2.935201 CACTTACAAGCAGCAGAGATCC 59.065 50.000 0.00 0.00 0.00 3.36
991 1650 2.836981 ACTTACAAGCAGCAGAGATCCT 59.163 45.455 0.00 0.00 0.00 3.24
992 1651 3.118811 ACTTACAAGCAGCAGAGATCCTC 60.119 47.826 0.00 0.00 0.00 3.71
993 1652 1.273759 ACAAGCAGCAGAGATCCTCA 58.726 50.000 0.00 0.00 32.06 3.86
994 1653 1.627329 ACAAGCAGCAGAGATCCTCAA 59.373 47.619 0.00 0.00 32.06 3.02
995 1654 2.008329 CAAGCAGCAGAGATCCTCAAC 58.992 52.381 0.00 0.00 32.06 3.18
1015 1674 0.387202 CTAGATGCCGTCTGGTCAGG 59.613 60.000 0.00 0.00 37.83 3.86
1467 2341 0.388520 CGCTGTTCTCCATGTCGTCA 60.389 55.000 0.00 0.00 0.00 4.35
1654 2528 3.190874 AGCTAATCGTTCAGCTAAGCAC 58.809 45.455 5.77 0.00 46.14 4.40
1724 2611 3.251004 CCACAGAGTAGGCAGTTTGTTTC 59.749 47.826 0.00 0.00 0.00 2.78
1726 2613 4.576463 CACAGAGTAGGCAGTTTGTTTCTT 59.424 41.667 0.00 0.00 0.00 2.52
1727 2614 4.816925 ACAGAGTAGGCAGTTTGTTTCTTC 59.183 41.667 0.00 0.00 0.00 2.87
1728 2615 4.816385 CAGAGTAGGCAGTTTGTTTCTTCA 59.184 41.667 0.00 0.00 0.00 3.02
1730 2617 6.016777 CAGAGTAGGCAGTTTGTTTCTTCATT 60.017 38.462 0.00 0.00 0.00 2.57
1731 2618 6.016777 AGAGTAGGCAGTTTGTTTCTTCATTG 60.017 38.462 0.00 0.00 0.00 2.82
1732 2619 5.594317 AGTAGGCAGTTTGTTTCTTCATTGT 59.406 36.000 0.00 0.00 0.00 2.71
1736 2623 6.040842 AGGCAGTTTGTTTCTTCATTGTGTAT 59.959 34.615 0.00 0.00 0.00 2.29
1737 2624 7.230510 AGGCAGTTTGTTTCTTCATTGTGTATA 59.769 33.333 0.00 0.00 0.00 1.47
1738 2625 7.538678 GGCAGTTTGTTTCTTCATTGTGTATAG 59.461 37.037 0.00 0.00 0.00 1.31
1739 2626 7.061094 GCAGTTTGTTTCTTCATTGTGTATAGC 59.939 37.037 0.00 0.00 0.00 2.97
1740 2627 8.075574 CAGTTTGTTTCTTCATTGTGTATAGCA 58.924 33.333 0.00 0.00 0.00 3.49
1745 2632 9.979578 TGTTTCTTCATTGTGTATAGCAATTTT 57.020 25.926 1.01 0.00 34.68 1.82
1756 2651 8.952278 TGTGTATAGCAATTTTTCGGTTTCTAT 58.048 29.630 0.00 0.00 0.00 1.98
1764 2659 7.041712 GCAATTTTTCGGTTTCTATTTTTGGGA 60.042 33.333 0.00 0.00 0.00 4.37
1765 2660 8.495148 CAATTTTTCGGTTTCTATTTTTGGGAG 58.505 33.333 0.00 0.00 0.00 4.30
1771 2666 5.475564 CGGTTTCTATTTTTGGGAGAAAGGA 59.524 40.000 0.00 0.00 0.00 3.36
1777 2672 8.674925 TCTATTTTTGGGAGAAAGGACTACTA 57.325 34.615 0.00 0.00 0.00 1.82
1779 2674 4.796038 TTTGGGAGAAAGGACTACTACG 57.204 45.455 0.00 0.00 0.00 3.51
1780 2675 3.446442 TGGGAGAAAGGACTACTACGT 57.554 47.619 0.00 0.00 0.00 3.57
1781 2676 3.350833 TGGGAGAAAGGACTACTACGTC 58.649 50.000 0.00 0.00 0.00 4.34
1794 2689 7.517343 GACTACTACGTCCTTTTCCATTTAC 57.483 40.000 0.00 0.00 0.00 2.01
1796 2691 7.095270 ACTACTACGTCCTTTTCCATTTACAG 58.905 38.462 0.00 0.00 0.00 2.74
1797 2692 5.243207 ACTACGTCCTTTTCCATTTACAGG 58.757 41.667 0.00 0.00 0.00 4.00
1799 2694 2.163613 CGTCCTTTTCCATTTACAGGGC 59.836 50.000 0.00 0.00 0.00 5.19
1800 2695 3.431415 GTCCTTTTCCATTTACAGGGCT 58.569 45.455 0.00 0.00 0.00 5.19
1801 2696 3.444034 GTCCTTTTCCATTTACAGGGCTC 59.556 47.826 0.00 0.00 0.00 4.70
1802 2697 3.075283 TCCTTTTCCATTTACAGGGCTCA 59.925 43.478 0.00 0.00 0.00 4.26
1803 2698 3.831911 CCTTTTCCATTTACAGGGCTCAA 59.168 43.478 0.00 0.00 0.00 3.02
1804 2699 4.467438 CCTTTTCCATTTACAGGGCTCAAT 59.533 41.667 0.00 0.00 0.00 2.57
1806 2701 5.659440 TTTCCATTTACAGGGCTCAATTC 57.341 39.130 0.00 0.00 0.00 2.17
1807 2702 4.314522 TCCATTTACAGGGCTCAATTCA 57.685 40.909 0.00 0.00 0.00 2.57
1808 2703 4.671831 TCCATTTACAGGGCTCAATTCAA 58.328 39.130 0.00 0.00 0.00 2.69
1809 2704 5.083122 TCCATTTACAGGGCTCAATTCAAA 58.917 37.500 0.00 0.00 0.00 2.69
1811 2706 6.042552 TCCATTTACAGGGCTCAATTCAAAAA 59.957 34.615 0.00 0.00 0.00 1.94
1813 2708 7.064966 CCATTTACAGGGCTCAATTCAAAAATC 59.935 37.037 0.00 0.00 0.00 2.17
1814 2709 6.916360 TTACAGGGCTCAATTCAAAAATCT 57.084 33.333 0.00 0.00 0.00 2.40
1815 2710 5.143376 ACAGGGCTCAATTCAAAAATCTG 57.857 39.130 0.00 0.00 0.00 2.90
1816 2711 4.834496 ACAGGGCTCAATTCAAAAATCTGA 59.166 37.500 0.00 0.00 0.00 3.27
1817 2712 5.166398 CAGGGCTCAATTCAAAAATCTGAC 58.834 41.667 0.00 0.00 0.00 3.51
1819 2714 4.021192 GGGCTCAATTCAAAAATCTGACCA 60.021 41.667 0.00 0.00 0.00 4.02
1821 2716 6.168389 GGCTCAATTCAAAAATCTGACCAAT 58.832 36.000 0.00 0.00 0.00 3.16
1822 2717 6.312180 GGCTCAATTCAAAAATCTGACCAATC 59.688 38.462 0.00 0.00 0.00 2.67
1823 2718 6.869913 GCTCAATTCAAAAATCTGACCAATCA 59.130 34.615 0.00 0.00 0.00 2.57
1824 2719 7.385752 GCTCAATTCAAAAATCTGACCAATCAA 59.614 33.333 0.00 0.00 33.30 2.57
1825 2720 9.263538 CTCAATTCAAAAATCTGACCAATCAAA 57.736 29.630 0.00 0.00 33.30 2.69
1826 2721 9.263538 TCAATTCAAAAATCTGACCAATCAAAG 57.736 29.630 0.00 0.00 33.30 2.77
1827 2722 9.048446 CAATTCAAAAATCTGACCAATCAAAGT 57.952 29.630 0.00 0.00 33.30 2.66
1829 2724 9.918630 ATTCAAAAATCTGACCAATCAAAGTAG 57.081 29.630 0.00 0.00 33.30 2.57
1830 2725 8.690203 TCAAAAATCTGACCAATCAAAGTAGA 57.310 30.769 0.00 0.00 33.30 2.59
1833 2728 8.868522 AAAATCTGACCAATCAAAGTAGATGA 57.131 30.769 0.00 0.00 33.30 2.92
1834 2729 9.471702 AAAATCTGACCAATCAAAGTAGATGAT 57.528 29.630 0.00 0.00 39.15 2.45
1835 2730 8.447924 AATCTGACCAATCAAAGTAGATGATG 57.552 34.615 0.00 0.00 37.58 3.07
1836 2731 7.186570 TCTGACCAATCAAAGTAGATGATGA 57.813 36.000 0.00 0.00 37.58 2.92
1837 2732 7.270779 TCTGACCAATCAAAGTAGATGATGAG 58.729 38.462 0.00 0.00 37.58 2.90
1838 2733 6.950842 TGACCAATCAAAGTAGATGATGAGT 58.049 36.000 0.00 0.00 37.58 3.41
1839 2734 6.820152 TGACCAATCAAAGTAGATGATGAGTG 59.180 38.462 0.00 0.00 37.58 3.51
1842 2737 7.012959 CAATCAAAGTAGATGATGAGTGGTG 57.987 40.000 0.00 0.00 37.58 4.17
1843 2738 6.550938 ATCAAAGTAGATGATGAGTGGTGA 57.449 37.500 0.00 0.00 36.21 4.02
1844 2739 6.358974 TCAAAGTAGATGATGAGTGGTGAA 57.641 37.500 0.00 0.00 0.00 3.18
1845 2740 6.768483 TCAAAGTAGATGATGAGTGGTGAAA 58.232 36.000 0.00 0.00 0.00 2.69
1846 2741 7.397221 TCAAAGTAGATGATGAGTGGTGAAAT 58.603 34.615 0.00 0.00 0.00 2.17
1847 2742 8.539544 TCAAAGTAGATGATGAGTGGTGAAATA 58.460 33.333 0.00 0.00 0.00 1.40
1848 2743 9.334947 CAAAGTAGATGATGAGTGGTGAAATAT 57.665 33.333 0.00 0.00 0.00 1.28
1849 2744 9.911788 AAAGTAGATGATGAGTGGTGAAATATT 57.088 29.630 0.00 0.00 0.00 1.28
1850 2745 9.911788 AAGTAGATGATGAGTGGTGAAATATTT 57.088 29.630 0.00 0.00 0.00 1.40
1851 2746 9.911788 AGTAGATGATGAGTGGTGAAATATTTT 57.088 29.630 1.43 0.00 0.00 1.82
1854 2749 8.400947 AGATGATGAGTGGTGAAATATTTTTCG 58.599 33.333 1.43 0.00 43.49 3.46
1855 2750 7.447374 TGATGAGTGGTGAAATATTTTTCGT 57.553 32.000 1.43 0.00 43.49 3.85
1856 2751 7.304735 TGATGAGTGGTGAAATATTTTTCGTG 58.695 34.615 1.43 0.00 43.49 4.35
1857 2752 6.869315 TGAGTGGTGAAATATTTTTCGTGA 57.131 33.333 1.43 0.00 43.49 4.35
1858 2753 7.447374 TGAGTGGTGAAATATTTTTCGTGAT 57.553 32.000 1.43 0.00 43.49 3.06
1859 2754 7.881142 TGAGTGGTGAAATATTTTTCGTGATT 58.119 30.769 1.43 0.00 43.49 2.57
1860 2755 8.356657 TGAGTGGTGAAATATTTTTCGTGATTT 58.643 29.630 1.43 0.00 43.49 2.17
1861 2756 8.519492 AGTGGTGAAATATTTTTCGTGATTTG 57.481 30.769 1.43 0.00 43.49 2.32
1862 2757 8.141268 AGTGGTGAAATATTTTTCGTGATTTGT 58.859 29.630 1.43 0.00 43.49 2.83
1863 2758 9.400638 GTGGTGAAATATTTTTCGTGATTTGTA 57.599 29.630 1.43 0.00 43.49 2.41
1864 2759 9.967346 TGGTGAAATATTTTTCGTGATTTGTAA 57.033 25.926 1.43 0.00 43.49 2.41
1871 2766 9.691362 ATATTTTTCGTGATTTGTAAAAGCACT 57.309 25.926 16.32 2.69 0.00 4.40
1872 2767 7.444558 TTTTTCGTGATTTGTAAAAGCACTC 57.555 32.000 16.32 0.00 0.00 3.51
1873 2768 5.743026 TTCGTGATTTGTAAAAGCACTCA 57.257 34.783 16.32 3.45 0.00 3.41
1874 2769 5.743026 TCGTGATTTGTAAAAGCACTCAA 57.257 34.783 16.32 2.81 0.00 3.02
1875 2770 6.312399 TCGTGATTTGTAAAAGCACTCAAT 57.688 33.333 16.32 0.00 0.00 2.57
1876 2771 6.734137 TCGTGATTTGTAAAAGCACTCAATT 58.266 32.000 16.32 0.00 0.00 2.32
1877 2772 7.866729 TCGTGATTTGTAAAAGCACTCAATTA 58.133 30.769 16.32 0.00 0.00 1.40
1878 2773 8.346300 TCGTGATTTGTAAAAGCACTCAATTAA 58.654 29.630 16.32 0.00 0.00 1.40
1879 2774 9.128107 CGTGATTTGTAAAAGCACTCAATTAAT 57.872 29.630 16.32 0.00 0.00 1.40
1881 2776 8.924691 TGATTTGTAAAAGCACTCAATTAATGC 58.075 29.630 0.00 0.60 39.74 3.56
1882 2777 8.830201 ATTTGTAAAAGCACTCAATTAATGCA 57.170 26.923 9.62 0.00 41.97 3.96
1883 2778 8.830201 TTTGTAAAAGCACTCAATTAATGCAT 57.170 26.923 0.00 0.00 41.97 3.96
1884 2779 8.830201 TTGTAAAAGCACTCAATTAATGCATT 57.170 26.923 17.56 17.56 41.97 3.56
1885 2780 8.830201 TGTAAAAGCACTCAATTAATGCATTT 57.170 26.923 18.75 12.59 41.54 2.32
1886 2781 8.710551 TGTAAAAGCACTCAATTAATGCATTTG 58.289 29.630 18.75 10.27 39.70 2.32
1887 2782 7.733402 AAAAGCACTCAATTAATGCATTTGT 57.267 28.000 18.75 3.74 38.44 2.83
1888 2783 7.733402 AAAGCACTCAATTAATGCATTTGTT 57.267 28.000 18.75 10.00 41.97 2.83
1889 2784 7.733402 AAGCACTCAATTAATGCATTTGTTT 57.267 28.000 18.75 9.08 41.97 2.83
1890 2785 8.830201 AAGCACTCAATTAATGCATTTGTTTA 57.170 26.923 18.75 4.02 41.97 2.01
1891 2786 8.830201 AGCACTCAATTAATGCATTTGTTTAA 57.170 26.923 18.75 5.60 41.97 1.52
1892 2787 9.270640 AGCACTCAATTAATGCATTTGTTTAAA 57.729 25.926 18.75 4.81 41.97 1.52
1893 2788 9.875675 GCACTCAATTAATGCATTTGTTTAAAA 57.124 25.926 18.75 4.02 39.23 1.52
1949 2844 5.629079 ATGCATGCATGAAGTAGATGATG 57.371 39.130 31.74 0.23 35.03 3.07
1950 2845 4.710324 TGCATGCATGAAGTAGATGATGA 58.290 39.130 30.64 0.00 0.00 2.92
1951 2846 4.755123 TGCATGCATGAAGTAGATGATGAG 59.245 41.667 30.64 0.00 0.00 2.90
1952 2847 4.755629 GCATGCATGAAGTAGATGATGAGT 59.244 41.667 30.64 0.00 0.00 3.41
1953 2848 5.930569 GCATGCATGAAGTAGATGATGAGTA 59.069 40.000 30.64 0.00 0.00 2.59
1954 2849 6.594547 GCATGCATGAAGTAGATGATGAGTAT 59.405 38.462 30.64 0.00 0.00 2.12
1955 2850 7.119407 GCATGCATGAAGTAGATGATGAGTATT 59.881 37.037 30.64 0.00 0.00 1.89
1956 2851 7.958053 TGCATGAAGTAGATGATGAGTATTG 57.042 36.000 0.00 0.00 0.00 1.90
1957 2852 7.729116 TGCATGAAGTAGATGATGAGTATTGA 58.271 34.615 0.00 0.00 0.00 2.57
1958 2853 8.373220 TGCATGAAGTAGATGATGAGTATTGAT 58.627 33.333 0.00 0.00 0.00 2.57
1959 2854 8.871862 GCATGAAGTAGATGATGAGTATTGATC 58.128 37.037 0.00 0.00 0.00 2.92
1960 2855 9.924650 CATGAAGTAGATGATGAGTATTGATCA 57.075 33.333 0.00 0.00 33.20 2.92
1962 2857 9.978044 TGAAGTAGATGATGAGTATTGATCAAG 57.022 33.333 14.54 0.00 32.43 3.02
1963 2858 9.979578 GAAGTAGATGATGAGTATTGATCAAGT 57.020 33.333 14.54 5.12 32.43 3.16
1964 2859 9.979578 AAGTAGATGATGAGTATTGATCAAGTC 57.020 33.333 14.54 10.65 32.43 3.01
1965 2860 9.365906 AGTAGATGATGAGTATTGATCAAGTCT 57.634 33.333 14.54 13.56 32.43 3.24
1966 2861 9.624697 GTAGATGATGAGTATTGATCAAGTCTC 57.375 37.037 23.94 23.94 32.43 3.36
1967 2862 8.481492 AGATGATGAGTATTGATCAAGTCTCT 57.519 34.615 27.43 19.14 32.43 3.10
1968 2863 8.579006 AGATGATGAGTATTGATCAAGTCTCTC 58.421 37.037 27.43 23.27 32.43 3.20
1969 2864 7.651027 TGATGAGTATTGATCAAGTCTCTCA 57.349 36.000 27.43 25.47 35.65 3.27
1970 2865 8.247666 TGATGAGTATTGATCAAGTCTCTCAT 57.752 34.615 27.59 27.59 41.84 2.90
1971 2866 9.359653 TGATGAGTATTGATCAAGTCTCTCATA 57.640 33.333 27.45 19.60 40.12 2.15
1975 2870 9.638239 GAGTATTGATCAAGTCTCTCATAATCC 57.362 37.037 23.65 6.18 0.00 3.01
1976 2871 9.378504 AGTATTGATCAAGTCTCTCATAATCCT 57.621 33.333 14.54 0.00 0.00 3.24
1977 2872 9.995003 GTATTGATCAAGTCTCTCATAATCCTT 57.005 33.333 14.54 0.00 0.00 3.36
1978 2873 8.905660 ATTGATCAAGTCTCTCATAATCCTTG 57.094 34.615 14.54 0.00 0.00 3.61
1979 2874 6.286758 TGATCAAGTCTCTCATAATCCTTGC 58.713 40.000 0.00 0.00 31.64 4.01
1980 2875 5.682234 TCAAGTCTCTCATAATCCTTGCA 57.318 39.130 0.00 0.00 31.64 4.08
1981 2876 6.244552 TCAAGTCTCTCATAATCCTTGCAT 57.755 37.500 0.00 0.00 31.64 3.96
1982 2877 6.053650 TCAAGTCTCTCATAATCCTTGCATG 58.946 40.000 0.00 0.00 31.64 4.06
1983 2878 4.387598 AGTCTCTCATAATCCTTGCATGC 58.612 43.478 11.82 11.82 0.00 4.06
1984 2879 4.132336 GTCTCTCATAATCCTTGCATGCA 58.868 43.478 18.46 18.46 0.00 3.96
1985 2880 4.577693 GTCTCTCATAATCCTTGCATGCAA 59.422 41.667 30.12 30.12 0.00 4.08
1986 2881 5.241064 GTCTCTCATAATCCTTGCATGCAAT 59.759 40.000 31.96 20.06 35.20 3.56
2005 2900 7.725818 TGCAATGAATTAATGCACTTTGAAA 57.274 28.000 12.24 0.00 44.52 2.69
2006 2901 8.325421 TGCAATGAATTAATGCACTTTGAAAT 57.675 26.923 12.24 0.00 44.52 2.17
2007 2902 8.444715 TGCAATGAATTAATGCACTTTGAAATC 58.555 29.630 12.24 0.00 44.52 2.17
2008 2903 8.662141 GCAATGAATTAATGCACTTTGAAATCT 58.338 29.630 12.24 0.00 39.81 2.40
2009 2904 9.967245 CAATGAATTAATGCACTTTGAAATCTG 57.033 29.630 0.00 0.00 0.00 2.90
2010 2905 9.932207 AATGAATTAATGCACTTTGAAATCTGA 57.068 25.926 0.00 0.00 0.00 3.27
2011 2906 8.975410 TGAATTAATGCACTTTGAAATCTGAG 57.025 30.769 0.00 0.00 0.00 3.35
2012 2907 7.543172 TGAATTAATGCACTTTGAAATCTGAGC 59.457 33.333 0.00 0.00 0.00 4.26
2013 2908 4.859304 AATGCACTTTGAAATCTGAGCA 57.141 36.364 0.00 0.00 35.03 4.26
2014 2909 5.401531 AATGCACTTTGAAATCTGAGCAT 57.598 34.783 0.00 0.00 42.62 3.79
2015 2910 4.168922 TGCACTTTGAAATCTGAGCATG 57.831 40.909 0.00 0.00 0.00 4.06
2016 2911 3.570975 TGCACTTTGAAATCTGAGCATGT 59.429 39.130 0.00 0.00 0.00 3.21
2017 2912 3.918591 GCACTTTGAAATCTGAGCATGTG 59.081 43.478 0.00 0.00 0.00 3.21
2018 2913 4.320714 GCACTTTGAAATCTGAGCATGTGA 60.321 41.667 0.00 0.00 0.00 3.58
2019 2914 5.621555 GCACTTTGAAATCTGAGCATGTGAT 60.622 40.000 0.00 0.00 0.00 3.06
2020 2915 5.800438 CACTTTGAAATCTGAGCATGTGATG 59.200 40.000 0.00 0.00 0.00 3.07
2021 2916 4.976224 TTGAAATCTGAGCATGTGATGG 57.024 40.909 0.00 0.00 0.00 3.51
2022 2917 4.224991 TGAAATCTGAGCATGTGATGGA 57.775 40.909 0.00 0.00 0.00 3.41
2023 2918 4.591929 TGAAATCTGAGCATGTGATGGAA 58.408 39.130 0.00 0.00 0.00 3.53
2024 2919 5.011586 TGAAATCTGAGCATGTGATGGAAA 58.988 37.500 0.00 0.00 0.00 3.13
2025 2920 4.978083 AATCTGAGCATGTGATGGAAAC 57.022 40.909 0.00 0.00 0.00 2.78
2050 2945 9.840427 ACAATCAAATTGAGACTTATAAAACGG 57.160 29.630 1.10 0.00 42.83 4.44
2056 2951 9.687210 AAATTGAGACTTATAAAACGGAAAACC 57.313 29.630 0.00 0.00 0.00 3.27
2057 2952 6.470557 TGAGACTTATAAAACGGAAAACCG 57.529 37.500 7.12 7.12 39.31 4.44
2058 2953 6.222389 TGAGACTTATAAAACGGAAAACCGA 58.778 36.000 15.45 0.00 36.94 4.69
2059 2954 6.705381 TGAGACTTATAAAACGGAAAACCGAA 59.295 34.615 15.45 0.00 36.94 4.30
2060 2955 7.226325 TGAGACTTATAAAACGGAAAACCGAAA 59.774 33.333 15.45 0.00 36.94 3.46
2061 2956 8.102800 AGACTTATAAAACGGAAAACCGAAAT 57.897 30.769 15.45 5.62 36.94 2.17
2062 2957 8.570488 AGACTTATAAAACGGAAAACCGAAATT 58.430 29.630 15.45 8.97 36.94 1.82
2063 2958 9.184062 GACTTATAAAACGGAAAACCGAAATTT 57.816 29.630 15.45 13.72 36.94 1.82
2064 2959 9.531942 ACTTATAAAACGGAAAACCGAAATTTT 57.468 25.926 15.45 12.83 34.46 1.82
2067 2962 6.723131 AAAACGGAAAACCGAAATTTTTGA 57.277 29.167 15.45 0.00 31.90 2.69
2068 2963 5.959652 AACGGAAAACCGAAATTTTTGAG 57.040 34.783 15.45 0.00 31.90 3.02
2069 2964 5.251601 ACGGAAAACCGAAATTTTTGAGA 57.748 34.783 15.45 0.00 31.90 3.27
2070 2965 5.838529 ACGGAAAACCGAAATTTTTGAGAT 58.161 33.333 15.45 0.00 31.90 2.75
2071 2966 6.972722 ACGGAAAACCGAAATTTTTGAGATA 58.027 32.000 15.45 0.00 31.90 1.98
2072 2967 7.427214 ACGGAAAACCGAAATTTTTGAGATAA 58.573 30.769 15.45 0.00 31.90 1.75
2073 2968 7.593644 ACGGAAAACCGAAATTTTTGAGATAAG 59.406 33.333 15.45 0.00 31.90 1.73
2074 2969 7.410407 CGGAAAACCGAAATTTTTGAGATAAGC 60.410 37.037 2.30 0.00 31.90 3.09
2075 2970 7.148639 GGAAAACCGAAATTTTTGAGATAAGCC 60.149 37.037 0.00 0.00 31.90 4.35
2076 2971 6.590234 AACCGAAATTTTTGAGATAAGCCT 57.410 33.333 0.00 0.00 0.00 4.58
2077 2972 6.590234 ACCGAAATTTTTGAGATAAGCCTT 57.410 33.333 0.00 0.00 0.00 4.35
2078 2973 7.696992 ACCGAAATTTTTGAGATAAGCCTTA 57.303 32.000 0.00 0.00 0.00 2.69
2079 2974 8.293699 ACCGAAATTTTTGAGATAAGCCTTAT 57.706 30.769 0.00 0.00 0.00 1.73
2080 2975 9.403583 ACCGAAATTTTTGAGATAAGCCTTATA 57.596 29.630 0.00 0.00 0.00 0.98
2086 2981 7.562454 TTTTGAGATAAGCCTTATAAACCGG 57.438 36.000 0.00 0.00 0.00 5.28
2087 2982 5.223449 TGAGATAAGCCTTATAAACCGGG 57.777 43.478 6.32 0.00 0.00 5.73
2088 2983 4.903049 TGAGATAAGCCTTATAAACCGGGA 59.097 41.667 6.32 0.00 0.00 5.14
2089 2984 5.367352 TGAGATAAGCCTTATAAACCGGGAA 59.633 40.000 6.32 0.00 0.00 3.97
2090 2985 5.866207 AGATAAGCCTTATAAACCGGGAAG 58.134 41.667 6.32 0.75 0.00 3.46
2092 2987 2.484602 AGCCTTATAAACCGGGAAGGA 58.515 47.619 19.51 0.00 45.00 3.36
2093 2988 2.438392 AGCCTTATAAACCGGGAAGGAG 59.562 50.000 19.51 5.96 45.00 3.69
2094 2989 2.486727 GCCTTATAAACCGGGAAGGAGG 60.487 54.545 19.51 13.89 45.00 4.30
2095 2990 2.105993 CCTTATAAACCGGGAAGGAGGG 59.894 54.545 6.32 0.00 45.00 4.30
2096 2991 2.873053 TATAAACCGGGAAGGAGGGA 57.127 50.000 6.32 0.00 45.00 4.20
2097 2992 1.508256 ATAAACCGGGAAGGAGGGAG 58.492 55.000 6.32 0.00 45.00 4.30
2098 2993 0.117742 TAAACCGGGAAGGAGGGAGT 59.882 55.000 6.32 0.00 45.00 3.85
2099 2994 0.117742 AAACCGGGAAGGAGGGAGTA 59.882 55.000 6.32 0.00 45.00 2.59
2100 2995 0.325390 AACCGGGAAGGAGGGAGTAG 60.325 60.000 6.32 0.00 45.00 2.57
2101 2996 1.219824 ACCGGGAAGGAGGGAGTAGA 61.220 60.000 6.32 0.00 45.00 2.59
2102 2997 0.188834 CCGGGAAGGAGGGAGTAGAT 59.811 60.000 0.00 0.00 45.00 1.98
2103 2998 1.413227 CCGGGAAGGAGGGAGTAGATT 60.413 57.143 0.00 0.00 45.00 2.40
2104 2999 1.689273 CGGGAAGGAGGGAGTAGATTG 59.311 57.143 0.00 0.00 0.00 2.67
2105 3000 1.418264 GGGAAGGAGGGAGTAGATTGC 59.582 57.143 0.00 0.00 0.00 3.56
2106 3001 2.403561 GGAAGGAGGGAGTAGATTGCT 58.596 52.381 0.00 0.00 0.00 3.91
2107 3002 2.774809 GGAAGGAGGGAGTAGATTGCTT 59.225 50.000 0.00 0.00 0.00 3.91
2108 3003 3.967987 GGAAGGAGGGAGTAGATTGCTTA 59.032 47.826 0.00 0.00 0.00 3.09
2109 3004 4.595350 GGAAGGAGGGAGTAGATTGCTTAT 59.405 45.833 0.00 0.00 0.00 1.73
2110 3005 5.072464 GGAAGGAGGGAGTAGATTGCTTATT 59.928 44.000 0.00 0.00 0.00 1.40
2111 3006 6.409810 GGAAGGAGGGAGTAGATTGCTTATTT 60.410 42.308 0.00 0.00 0.00 1.40
2112 3007 7.202102 GGAAGGAGGGAGTAGATTGCTTATTTA 60.202 40.741 0.00 0.00 0.00 1.40
2113 3008 7.068686 AGGAGGGAGTAGATTGCTTATTTAC 57.931 40.000 0.00 0.00 0.00 2.01
2114 3009 6.615726 AGGAGGGAGTAGATTGCTTATTTACA 59.384 38.462 0.00 0.00 0.00 2.41
2115 3010 6.706716 GGAGGGAGTAGATTGCTTATTTACAC 59.293 42.308 0.00 0.00 0.00 2.90
2116 3011 6.592870 AGGGAGTAGATTGCTTATTTACACC 58.407 40.000 7.49 7.49 35.29 4.16
2117 3012 5.763698 GGGAGTAGATTGCTTATTTACACCC 59.236 44.000 14.49 14.49 42.96 4.61
2118 3013 6.354130 GGAGTAGATTGCTTATTTACACCCA 58.646 40.000 5.77 0.00 32.10 4.51
2119 3014 6.998673 GGAGTAGATTGCTTATTTACACCCAT 59.001 38.462 5.77 0.00 32.10 4.00
2120 3015 7.173390 GGAGTAGATTGCTTATTTACACCCATC 59.827 40.741 5.77 0.00 32.10 3.51
2121 3016 7.573710 AGTAGATTGCTTATTTACACCCATCA 58.426 34.615 0.00 0.00 0.00 3.07
2122 3017 8.052748 AGTAGATTGCTTATTTACACCCATCAA 58.947 33.333 0.00 0.00 0.00 2.57
2123 3018 7.902920 AGATTGCTTATTTACACCCATCAAT 57.097 32.000 0.00 0.00 0.00 2.57
2124 3019 8.310122 AGATTGCTTATTTACACCCATCAATT 57.690 30.769 0.00 0.00 0.00 2.32
2125 3020 9.420118 AGATTGCTTATTTACACCCATCAATTA 57.580 29.630 0.00 0.00 0.00 1.40
2156 3051 7.144000 GTCCATGAATCCAAATCAAATAGAGC 58.856 38.462 0.00 0.00 0.00 4.09
2167 3062 9.512435 CCAAATCAAATAGAGCATTAGTTTGAG 57.488 33.333 0.00 0.00 40.72 3.02
2292 5485 8.303876 GCAAATTGATTCCAAAAGTAGAAGGTA 58.696 33.333 0.00 0.00 35.67 3.08
2311 5504 3.369787 GGTACTACACCCCGCACTATTTT 60.370 47.826 0.00 0.00 42.07 1.82
2342 5538 5.871396 ACTCCATACTGTATTCGTCCATT 57.129 39.130 0.00 0.00 0.00 3.16
2347 5543 5.501715 CATACTGTATTCGTCCATTTGTGC 58.498 41.667 0.00 0.00 0.00 4.57
2368 5564 3.741476 CCAGAACTGGCAAGCGGC 61.741 66.667 7.95 0.00 44.73 6.53
2421 5617 0.813821 AACCGAACTACCCTAGCGAC 59.186 55.000 0.00 0.00 0.00 5.19
2430 5626 1.061570 CCCTAGCGACGACACGTAC 59.938 63.158 0.00 0.00 41.37 3.67
2444 6109 6.824557 ACGACACGTACTAATTTGGAAATTC 58.175 36.000 0.60 0.00 38.73 2.17
2446 6111 7.041916 ACGACACGTACTAATTTGGAAATTCAA 60.042 33.333 0.60 0.00 38.73 2.69
2468 7240 7.227873 TCAAACTATGAACAATTGGACCTACA 58.772 34.615 10.83 1.25 34.30 2.74
2475 7247 4.989279 ACAATTGGACCTACATGCAATC 57.011 40.909 10.83 0.00 39.45 2.67
2477 7249 4.957954 ACAATTGGACCTACATGCAATCAT 59.042 37.500 10.83 0.00 39.45 2.45
2478 7250 5.422970 ACAATTGGACCTACATGCAATCATT 59.577 36.000 10.83 0.00 39.45 2.57
2479 7251 6.070653 ACAATTGGACCTACATGCAATCATTT 60.071 34.615 10.83 0.00 39.45 2.32
2480 7252 5.999205 TTGGACCTACATGCAATCATTTT 57.001 34.783 0.00 0.00 0.00 1.82
2565 7337 9.974980 AACAATTGTTTTACGGTATTTTCAGAT 57.025 25.926 18.13 0.00 33.93 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.965226 TAAGATGGAGAGGGCCGGGG 62.965 65.000 2.18 0.00 0.00 5.73
37 38 9.486123 TCTATGATTAATCTAAGATGGAGAGGG 57.514 37.037 16.24 0.00 0.00 4.30
61 62 9.282569 GCCACATGATTAATCTAAGATTCTTCT 57.717 33.333 16.24 0.00 0.00 2.85
62 63 8.510505 GGCCACATGATTAATCTAAGATTCTTC 58.489 37.037 16.24 0.00 0.00 2.87
63 64 8.000709 TGGCCACATGATTAATCTAAGATTCTT 58.999 33.333 16.24 4.03 0.00 2.52
64 65 7.520798 TGGCCACATGATTAATCTAAGATTCT 58.479 34.615 16.24 0.00 0.00 2.40
65 66 7.446625 ACTGGCCACATGATTAATCTAAGATTC 59.553 37.037 16.24 3.24 0.00 2.52
66 67 7.230108 CACTGGCCACATGATTAATCTAAGATT 59.770 37.037 16.24 0.00 0.00 2.40
118 119 2.433604 GGAGTACTACCTTAAGGGGCAC 59.566 54.545 25.31 16.75 40.27 5.01
127 128 3.735720 ACTTCGAGGGAGTACTACCTT 57.264 47.619 28.01 11.83 46.12 3.50
135 136 5.032327 AGTGTTTTTAACTTCGAGGGAGT 57.968 39.130 0.00 0.00 0.00 3.85
136 137 5.298347 AGAGTGTTTTTAACTTCGAGGGAG 58.702 41.667 0.00 0.00 0.00 4.30
138 139 7.668525 ATAAGAGTGTTTTTAACTTCGAGGG 57.331 36.000 0.00 0.00 0.00 4.30
147 148 9.086336 CGTCCCGTAATATAAGAGTGTTTTTAA 57.914 33.333 0.00 0.00 0.00 1.52
148 149 7.706179 CCGTCCCGTAATATAAGAGTGTTTTTA 59.294 37.037 0.00 0.00 0.00 1.52
149 150 6.536224 CCGTCCCGTAATATAAGAGTGTTTTT 59.464 38.462 0.00 0.00 0.00 1.94
150 151 6.044682 CCGTCCCGTAATATAAGAGTGTTTT 58.955 40.000 0.00 0.00 0.00 2.43
151 152 5.360714 TCCGTCCCGTAATATAAGAGTGTTT 59.639 40.000 0.00 0.00 0.00 2.83
152 153 4.889409 TCCGTCCCGTAATATAAGAGTGTT 59.111 41.667 0.00 0.00 0.00 3.32
153 154 4.464008 TCCGTCCCGTAATATAAGAGTGT 58.536 43.478 0.00 0.00 0.00 3.55
154 155 5.399858 CATCCGTCCCGTAATATAAGAGTG 58.600 45.833 0.00 0.00 0.00 3.51
155 156 4.461781 CCATCCGTCCCGTAATATAAGAGT 59.538 45.833 0.00 0.00 0.00 3.24
156 157 4.703575 TCCATCCGTCCCGTAATATAAGAG 59.296 45.833 0.00 0.00 0.00 2.85
157 158 4.665451 TCCATCCGTCCCGTAATATAAGA 58.335 43.478 0.00 0.00 0.00 2.10
158 159 4.461781 ACTCCATCCGTCCCGTAATATAAG 59.538 45.833 0.00 0.00 0.00 1.73
159 160 4.410099 ACTCCATCCGTCCCGTAATATAA 58.590 43.478 0.00 0.00 0.00 0.98
160 161 4.038271 ACTCCATCCGTCCCGTAATATA 57.962 45.455 0.00 0.00 0.00 0.86
161 162 2.885616 ACTCCATCCGTCCCGTAATAT 58.114 47.619 0.00 0.00 0.00 1.28
162 163 2.369983 ACTCCATCCGTCCCGTAATA 57.630 50.000 0.00 0.00 0.00 0.98
163 164 2.236766 CTACTCCATCCGTCCCGTAAT 58.763 52.381 0.00 0.00 0.00 1.89
164 165 1.064463 ACTACTCCATCCGTCCCGTAA 60.064 52.381 0.00 0.00 0.00 3.18
165 166 0.548031 ACTACTCCATCCGTCCCGTA 59.452 55.000 0.00 0.00 0.00 4.02
166 167 0.548031 TACTACTCCATCCGTCCCGT 59.452 55.000 0.00 0.00 0.00 5.28
167 168 1.202734 TCTACTACTCCATCCGTCCCG 60.203 57.143 0.00 0.00 0.00 5.14
168 169 2.653234 TCTACTACTCCATCCGTCCC 57.347 55.000 0.00 0.00 0.00 4.46
169 170 6.208994 ACAAATATCTACTACTCCATCCGTCC 59.791 42.308 0.00 0.00 0.00 4.79
170 171 7.216973 ACAAATATCTACTACTCCATCCGTC 57.783 40.000 0.00 0.00 0.00 4.79
171 172 8.880991 ATACAAATATCTACTACTCCATCCGT 57.119 34.615 0.00 0.00 0.00 4.69
172 173 8.957466 TGATACAAATATCTACTACTCCATCCG 58.043 37.037 0.00 0.00 38.47 4.18
176 177 9.822727 TCCATGATACAAATATCTACTACTCCA 57.177 33.333 0.00 0.00 38.47 3.86
192 193 9.513906 TTTTTAGAAACAGTCATCCATGATACA 57.486 29.630 0.00 0.00 39.30 2.29
220 221 7.176690 GGATTTTATCAGAAAGACAAGACCCAA 59.823 37.037 0.00 0.00 0.00 4.12
222 223 6.887002 AGGATTTTATCAGAAAGACAAGACCC 59.113 38.462 0.00 0.00 0.00 4.46
253 908 5.003778 CGCAATGTTTCGATTCATCCTTTTC 59.996 40.000 3.87 0.00 0.00 2.29
264 919 1.924524 CCGTAGTCGCAATGTTTCGAT 59.075 47.619 0.00 0.00 37.06 3.59
269 924 1.231221 TTTGCCGTAGTCGCAATGTT 58.769 45.000 0.00 0.00 35.54 2.71
270 925 1.069500 GTTTTGCCGTAGTCGCAATGT 60.069 47.619 0.00 0.00 35.54 2.71
271 926 1.196808 AGTTTTGCCGTAGTCGCAATG 59.803 47.619 0.00 0.00 35.54 2.82
274 929 1.279527 CGAGTTTTGCCGTAGTCGCA 61.280 55.000 0.00 0.00 35.54 5.10
278 933 0.611714 ATCCCGAGTTTTGCCGTAGT 59.388 50.000 0.00 0.00 0.00 2.73
279 934 2.589798 TATCCCGAGTTTTGCCGTAG 57.410 50.000 0.00 0.00 0.00 3.51
280 935 3.264104 CTTTATCCCGAGTTTTGCCGTA 58.736 45.455 0.00 0.00 0.00 4.02
281 936 2.081462 CTTTATCCCGAGTTTTGCCGT 58.919 47.619 0.00 0.00 0.00 5.68
282 937 2.081462 ACTTTATCCCGAGTTTTGCCG 58.919 47.619 0.00 0.00 0.00 5.69
287 942 6.407752 CCACATAGGTACTTTATCCCGAGTTT 60.408 42.308 0.00 0.00 41.75 2.66
302 957 9.573166 AGTATACGTAATACAACCACATAGGTA 57.427 33.333 0.00 0.00 45.23 3.08
322 977 6.094881 ACCCATTGCACAACATGTAAGTATAC 59.905 38.462 0.00 0.00 36.25 1.47
323 978 6.184068 ACCCATTGCACAACATGTAAGTATA 58.816 36.000 0.00 0.00 36.25 1.47
324 979 5.016173 ACCCATTGCACAACATGTAAGTAT 58.984 37.500 0.00 0.00 36.25 2.12
325 980 4.402829 ACCCATTGCACAACATGTAAGTA 58.597 39.130 0.00 0.00 36.25 2.24
326 981 3.230134 ACCCATTGCACAACATGTAAGT 58.770 40.909 0.00 0.00 36.25 2.24
327 982 3.940209 ACCCATTGCACAACATGTAAG 57.060 42.857 0.00 0.00 36.25 2.34
328 983 4.145052 TGTACCCATTGCACAACATGTAA 58.855 39.130 0.00 0.00 37.31 2.41
329 984 3.756117 TGTACCCATTGCACAACATGTA 58.244 40.909 0.00 0.00 0.00 2.29
330 985 2.591923 TGTACCCATTGCACAACATGT 58.408 42.857 0.00 0.00 0.00 3.21
331 986 3.193056 TGATGTACCCATTGCACAACATG 59.807 43.478 0.00 0.00 0.00 3.21
332 987 3.429492 TGATGTACCCATTGCACAACAT 58.571 40.909 0.00 0.00 0.00 2.71
333 988 2.868899 TGATGTACCCATTGCACAACA 58.131 42.857 0.00 0.00 0.00 3.33
334 989 4.082300 TGAATGATGTACCCATTGCACAAC 60.082 41.667 13.27 2.08 34.67 3.32
335 990 4.085009 TGAATGATGTACCCATTGCACAA 58.915 39.130 13.27 0.00 34.67 3.33
336 991 3.694926 TGAATGATGTACCCATTGCACA 58.305 40.909 13.27 5.17 34.67 4.57
337 992 4.261741 GGATGAATGATGTACCCATTGCAC 60.262 45.833 13.27 3.16 34.67 4.57
338 993 3.890756 GGATGAATGATGTACCCATTGCA 59.109 43.478 13.27 11.32 34.67 4.08
339 994 3.058016 CGGATGAATGATGTACCCATTGC 60.058 47.826 13.27 7.49 34.67 3.56
340 995 3.503363 CCGGATGAATGATGTACCCATTG 59.497 47.826 13.27 2.10 34.67 2.82
341 996 3.498481 CCCGGATGAATGATGTACCCATT 60.498 47.826 0.73 9.49 36.98 3.16
342 997 2.040278 CCCGGATGAATGATGTACCCAT 59.960 50.000 0.73 0.00 0.00 4.00
343 998 1.419762 CCCGGATGAATGATGTACCCA 59.580 52.381 0.73 0.00 0.00 4.51
344 999 1.420138 ACCCGGATGAATGATGTACCC 59.580 52.381 0.73 0.00 0.00 3.69
345 1000 2.930826 ACCCGGATGAATGATGTACC 57.069 50.000 0.73 0.00 0.00 3.34
346 1001 7.660208 ACTTATAAACCCGGATGAATGATGTAC 59.340 37.037 0.73 0.00 0.00 2.90
347 1002 7.741785 ACTTATAAACCCGGATGAATGATGTA 58.258 34.615 0.73 0.00 0.00 2.29
348 1003 6.601332 ACTTATAAACCCGGATGAATGATGT 58.399 36.000 0.73 0.00 0.00 3.06
349 1004 7.510549 AACTTATAAACCCGGATGAATGATG 57.489 36.000 0.73 0.00 0.00 3.07
350 1005 7.998964 AGAAACTTATAAACCCGGATGAATGAT 59.001 33.333 0.73 0.00 0.00 2.45
351 1006 7.343357 AGAAACTTATAAACCCGGATGAATGA 58.657 34.615 0.73 0.00 0.00 2.57
352 1007 7.568199 AGAAACTTATAAACCCGGATGAATG 57.432 36.000 0.73 0.00 0.00 2.67
353 1008 7.832187 TGAAGAAACTTATAAACCCGGATGAAT 59.168 33.333 0.73 0.00 0.00 2.57
354 1009 7.169591 TGAAGAAACTTATAAACCCGGATGAA 58.830 34.615 0.73 0.00 0.00 2.57
355 1010 6.713276 TGAAGAAACTTATAAACCCGGATGA 58.287 36.000 0.73 0.00 0.00 2.92
356 1011 6.995511 TGAAGAAACTTATAAACCCGGATG 57.004 37.500 0.73 0.00 0.00 3.51
357 1012 9.862149 AATATGAAGAAACTTATAAACCCGGAT 57.138 29.630 0.73 0.00 0.00 4.18
358 1013 9.689501 AAATATGAAGAAACTTATAAACCCGGA 57.310 29.630 0.73 0.00 0.00 5.14
376 1031 8.756864 GGTCAAAAGTTTAACGCAAAATATGAA 58.243 29.630 0.00 0.00 28.35 2.57
391 1046 9.161629 CCTAGTCAAATTTTTGGTCAAAAGTTT 57.838 29.630 17.79 17.79 45.05 2.66
402 1057 8.190784 ACTTGTGTCTTCCTAGTCAAATTTTTG 58.809 33.333 0.00 0.00 39.48 2.44
408 1063 5.105106 TGTGACTTGTGTCTTCCTAGTCAAA 60.105 40.000 0.00 0.00 44.64 2.69
515 1170 9.429359 CGTCCAATTTTTCAGATAGCTCTATAT 57.571 33.333 0.00 0.00 0.00 0.86
525 1180 4.853924 ACTTGCGTCCAATTTTTCAGAT 57.146 36.364 0.00 0.00 0.00 2.90
541 1196 6.480981 TGGTAGTAACTCAGTTAACAACTTGC 59.519 38.462 8.61 0.00 40.46 4.01
548 1203 9.712359 CTTTGTTTTGGTAGTAACTCAGTTAAC 57.288 33.333 0.00 0.00 29.42 2.01
558 1213 9.235537 GCGTAATTTTCTTTGTTTTGGTAGTAA 57.764 29.630 0.00 0.00 0.00 2.24
559 1214 7.587028 CGCGTAATTTTCTTTGTTTTGGTAGTA 59.413 33.333 0.00 0.00 0.00 1.82
560 1215 6.415573 CGCGTAATTTTCTTTGTTTTGGTAGT 59.584 34.615 0.00 0.00 0.00 2.73
562 1217 6.196724 CACGCGTAATTTTCTTTGTTTTGGTA 59.803 34.615 13.44 0.00 0.00 3.25
564 1219 5.230306 TCACGCGTAATTTTCTTTGTTTTGG 59.770 36.000 13.44 0.00 0.00 3.28
565 1220 6.020995 ACTCACGCGTAATTTTCTTTGTTTTG 60.021 34.615 13.44 0.00 0.00 2.44
566 1221 6.020995 CACTCACGCGTAATTTTCTTTGTTTT 60.021 34.615 13.44 0.00 0.00 2.43
569 1224 4.523813 CACTCACGCGTAATTTTCTTTGT 58.476 39.130 13.44 0.00 0.00 2.83
570 1225 3.906008 CCACTCACGCGTAATTTTCTTTG 59.094 43.478 13.44 0.00 0.00 2.77
571 1226 3.810941 TCCACTCACGCGTAATTTTCTTT 59.189 39.130 13.44 0.00 0.00 2.52
572 1227 3.395639 TCCACTCACGCGTAATTTTCTT 58.604 40.909 13.44 0.00 0.00 2.52
573 1228 3.034721 TCCACTCACGCGTAATTTTCT 57.965 42.857 13.44 0.00 0.00 2.52
574 1229 5.233476 TCATATCCACTCACGCGTAATTTTC 59.767 40.000 13.44 0.00 0.00 2.29
578 1233 4.049186 GTTCATATCCACTCACGCGTAAT 58.951 43.478 13.44 0.00 0.00 1.89
591 1246 5.692654 GGTCTAAGCTCTTTCGTTCATATCC 59.307 44.000 0.00 0.00 0.00 2.59
596 1251 4.602340 AAGGTCTAAGCTCTTTCGTTCA 57.398 40.909 0.00 0.00 0.00 3.18
605 1260 4.142038 CCTCTCCTCTAAGGTCTAAGCTC 58.858 52.174 0.00 0.00 36.53 4.09
611 1266 1.701422 ACCCCTCTCCTCTAAGGTCT 58.299 55.000 0.00 0.00 36.53 3.85
614 1269 2.487625 CGTCTACCCCTCTCCTCTAAGG 60.488 59.091 0.00 0.00 36.46 2.69
615 1270 2.173143 ACGTCTACCCCTCTCCTCTAAG 59.827 54.545 0.00 0.00 0.00 2.18
616 1271 2.092538 CACGTCTACCCCTCTCCTCTAA 60.093 54.545 0.00 0.00 0.00 2.10
617 1272 1.489649 CACGTCTACCCCTCTCCTCTA 59.510 57.143 0.00 0.00 0.00 2.43
620 1275 1.212441 CTACACGTCTACCCCTCTCCT 59.788 57.143 0.00 0.00 0.00 3.69
621 1276 1.677942 CTACACGTCTACCCCTCTCC 58.322 60.000 0.00 0.00 0.00 3.71
622 1277 1.023502 GCTACACGTCTACCCCTCTC 58.976 60.000 0.00 0.00 0.00 3.20
623 1278 0.624785 AGCTACACGTCTACCCCTCT 59.375 55.000 0.00 0.00 0.00 3.69
624 1279 1.023502 GAGCTACACGTCTACCCCTC 58.976 60.000 0.00 0.00 0.00 4.30
625 1280 0.747283 CGAGCTACACGTCTACCCCT 60.747 60.000 0.00 0.00 0.00 4.79
632 1287 0.179194 GTCTCACCGAGCTACACGTC 60.179 60.000 0.00 0.00 0.00 4.34
639 1294 0.318762 GTCCTTTGTCTCACCGAGCT 59.681 55.000 0.00 0.00 0.00 4.09
685 1340 2.048023 CACCCACCTGCATCGCATT 61.048 57.895 0.00 0.00 38.13 3.56
686 1341 2.274948 ATCACCCACCTGCATCGCAT 62.275 55.000 0.00 0.00 38.13 4.73
687 1342 2.482796 AATCACCCACCTGCATCGCA 62.483 55.000 0.00 0.00 36.92 5.10
688 1343 0.463654 TAATCACCCACCTGCATCGC 60.464 55.000 0.00 0.00 0.00 4.58
689 1344 1.670811 GTTAATCACCCACCTGCATCG 59.329 52.381 0.00 0.00 0.00 3.84
730 1385 0.180171 TGGATGATTACTGGCGGTGG 59.820 55.000 9.79 0.00 0.00 4.61
731 1386 1.670811 GTTGGATGATTACTGGCGGTG 59.329 52.381 9.79 0.00 0.00 4.94
732 1387 1.559682 AGTTGGATGATTACTGGCGGT 59.440 47.619 3.57 3.57 0.00 5.68
733 1388 2.332063 AGTTGGATGATTACTGGCGG 57.668 50.000 0.00 0.00 0.00 6.13
734 1389 4.634004 TGTTTAGTTGGATGATTACTGGCG 59.366 41.667 0.00 0.00 0.00 5.69
735 1390 6.509418 TTGTTTAGTTGGATGATTACTGGC 57.491 37.500 0.00 0.00 0.00 4.85
760 1415 4.929808 AGTAATTTCTGCTAACACTCACCG 59.070 41.667 0.00 0.00 0.00 4.94
761 1416 9.595823 TTATAGTAATTTCTGCTAACACTCACC 57.404 33.333 0.00 0.00 0.00 4.02
789 1447 3.203716 GTTCCACTTCGTCTCTTGGTTT 58.796 45.455 0.00 0.00 0.00 3.27
859 1517 6.377712 AGACGGGGAGTATATATAAGCAAGTC 59.622 42.308 0.00 1.71 0.00 3.01
862 1520 6.250711 TGAGACGGGGAGTATATATAAGCAA 58.749 40.000 0.00 0.00 0.00 3.91
866 1524 7.696981 AGAACTGAGACGGGGAGTATATATAA 58.303 38.462 0.00 0.00 0.00 0.98
887 1546 7.484140 AGGTTTTGTCTGAGAAAAATGAGAAC 58.516 34.615 13.44 1.74 0.00 3.01
939 1598 2.302733 TGGAAGAATCAGCAGCTGTGTA 59.697 45.455 22.10 3.29 32.61 2.90
984 1643 2.029470 CGGCATCTAGGTTGAGGATCTC 60.029 54.545 0.00 0.00 34.92 2.75
985 1644 1.967066 CGGCATCTAGGTTGAGGATCT 59.033 52.381 0.00 0.00 34.92 2.75
986 1645 1.689273 ACGGCATCTAGGTTGAGGATC 59.311 52.381 0.00 0.00 0.00 3.36
987 1646 1.689273 GACGGCATCTAGGTTGAGGAT 59.311 52.381 0.00 0.00 0.00 3.24
988 1647 1.112113 GACGGCATCTAGGTTGAGGA 58.888 55.000 0.00 0.00 0.00 3.71
989 1648 1.115467 AGACGGCATCTAGGTTGAGG 58.885 55.000 0.00 0.00 35.15 3.86
990 1649 1.202463 CCAGACGGCATCTAGGTTGAG 60.202 57.143 0.00 0.00 35.15 3.02
991 1650 0.824109 CCAGACGGCATCTAGGTTGA 59.176 55.000 0.00 0.00 35.15 3.18
992 1651 0.537188 ACCAGACGGCATCTAGGTTG 59.463 55.000 0.00 0.00 36.17 3.77
993 1652 0.824759 GACCAGACGGCATCTAGGTT 59.175 55.000 6.24 0.00 38.32 3.50
994 1653 0.324368 TGACCAGACGGCATCTAGGT 60.324 55.000 4.73 4.73 39.88 3.08
995 1654 0.387202 CTGACCAGACGGCATCTAGG 59.613 60.000 0.00 0.00 35.15 3.02
1452 2326 2.755929 GCCTGACGACATGGAGAAC 58.244 57.895 0.00 0.00 0.00 3.01
1467 2341 3.308014 GAGCTCCAGCAAGTCGCCT 62.308 63.158 0.87 0.00 45.16 5.52
1495 2369 2.568090 CATGCCGCCAAACCACTC 59.432 61.111 0.00 0.00 0.00 3.51
1578 2452 3.408501 CTCGCTGTCCTCTCGCCAG 62.409 68.421 0.00 0.00 0.00 4.85
1678 2552 6.047231 GGAAGAACACAACACAACTAGTACT 58.953 40.000 0.00 0.00 0.00 2.73
1679 2553 5.235831 GGGAAGAACACAACACAACTAGTAC 59.764 44.000 0.00 0.00 0.00 2.73
1680 2554 5.104859 TGGGAAGAACACAACACAACTAGTA 60.105 40.000 0.00 0.00 0.00 1.82
1681 2555 4.196971 GGGAAGAACACAACACAACTAGT 58.803 43.478 0.00 0.00 0.00 2.57
1683 2557 3.942748 GTGGGAAGAACACAACACAACTA 59.057 43.478 0.00 0.00 38.67 2.24
1684 2558 2.752903 GTGGGAAGAACACAACACAACT 59.247 45.455 0.00 0.00 38.67 3.16
1724 2611 7.754924 ACCGAAAAATTGCTATACACAATGAAG 59.245 33.333 0.00 0.00 37.78 3.02
1726 2613 7.151999 ACCGAAAAATTGCTATACACAATGA 57.848 32.000 0.00 0.00 37.78 2.57
1727 2614 7.810766 AACCGAAAAATTGCTATACACAATG 57.189 32.000 0.00 0.00 37.78 2.82
1728 2615 8.303876 AGAAACCGAAAAATTGCTATACACAAT 58.696 29.630 0.00 0.00 39.38 2.71
1730 2617 7.209471 AGAAACCGAAAAATTGCTATACACA 57.791 32.000 0.00 0.00 0.00 3.72
1731 2618 9.783256 AATAGAAACCGAAAAATTGCTATACAC 57.217 29.630 0.00 0.00 0.00 2.90
1736 2623 8.983724 CCAAAAATAGAAACCGAAAAATTGCTA 58.016 29.630 0.00 0.00 0.00 3.49
1737 2624 7.041440 CCCAAAAATAGAAACCGAAAAATTGCT 60.041 33.333 0.00 0.00 0.00 3.91
1738 2625 7.041712 TCCCAAAAATAGAAACCGAAAAATTGC 60.042 33.333 0.00 0.00 0.00 3.56
1739 2626 8.371770 TCCCAAAAATAGAAACCGAAAAATTG 57.628 30.769 0.00 0.00 0.00 2.32
1740 2627 8.425703 TCTCCCAAAAATAGAAACCGAAAAATT 58.574 29.630 0.00 0.00 0.00 1.82
1745 2632 6.015772 CCTTTCTCCCAAAAATAGAAACCGAA 60.016 38.462 0.00 0.00 35.02 4.30
1756 2651 5.070847 ACGTAGTAGTCCTTTCTCCCAAAAA 59.929 40.000 0.00 0.00 41.94 1.94
1777 2672 3.418047 CCCTGTAAATGGAAAAGGACGT 58.582 45.455 0.00 0.00 0.00 4.34
1779 2674 3.431415 AGCCCTGTAAATGGAAAAGGAC 58.569 45.455 0.00 0.00 0.00 3.85
1780 2675 3.075283 TGAGCCCTGTAAATGGAAAAGGA 59.925 43.478 0.00 0.00 0.00 3.36
1781 2676 3.430453 TGAGCCCTGTAAATGGAAAAGG 58.570 45.455 0.00 0.00 0.00 3.11
1782 2677 5.665916 ATTGAGCCCTGTAAATGGAAAAG 57.334 39.130 0.00 0.00 0.00 2.27
1784 2679 5.083122 TGAATTGAGCCCTGTAAATGGAAA 58.917 37.500 0.00 0.00 0.00 3.13
1785 2680 4.671831 TGAATTGAGCCCTGTAAATGGAA 58.328 39.130 0.00 0.00 0.00 3.53
1787 2682 5.404466 TTTGAATTGAGCCCTGTAAATGG 57.596 39.130 0.00 0.00 0.00 3.16
1788 2683 7.820872 AGATTTTTGAATTGAGCCCTGTAAATG 59.179 33.333 0.00 0.00 0.00 2.32
1789 2684 7.820872 CAGATTTTTGAATTGAGCCCTGTAAAT 59.179 33.333 0.00 0.00 0.00 1.40
1792 2687 6.009589 TCAGATTTTTGAATTGAGCCCTGTA 58.990 36.000 0.00 0.00 0.00 2.74
1794 2689 5.166398 GTCAGATTTTTGAATTGAGCCCTG 58.834 41.667 0.00 0.00 0.00 4.45
1796 2691 4.021192 TGGTCAGATTTTTGAATTGAGCCC 60.021 41.667 0.00 0.00 35.91 5.19
1797 2692 5.138125 TGGTCAGATTTTTGAATTGAGCC 57.862 39.130 0.00 0.00 35.91 4.70
1799 2694 8.821147 TTGATTGGTCAGATTTTTGAATTGAG 57.179 30.769 0.00 0.00 35.39 3.02
1800 2695 9.263538 CTTTGATTGGTCAGATTTTTGAATTGA 57.736 29.630 0.00 0.00 35.39 2.57
1801 2696 9.048446 ACTTTGATTGGTCAGATTTTTGAATTG 57.952 29.630 0.00 0.00 35.39 2.32
1803 2698 9.918630 CTACTTTGATTGGTCAGATTTTTGAAT 57.081 29.630 0.00 0.00 35.39 2.57
1804 2699 9.130661 TCTACTTTGATTGGTCAGATTTTTGAA 57.869 29.630 0.00 0.00 35.39 2.69
1806 2701 9.350357 CATCTACTTTGATTGGTCAGATTTTTG 57.650 33.333 0.00 0.00 35.39 2.44
1807 2702 9.300681 TCATCTACTTTGATTGGTCAGATTTTT 57.699 29.630 0.00 0.00 35.39 1.94
1808 2703 8.868522 TCATCTACTTTGATTGGTCAGATTTT 57.131 30.769 0.00 0.00 35.39 1.82
1809 2704 8.900781 CATCATCTACTTTGATTGGTCAGATTT 58.099 33.333 0.00 0.00 35.39 2.17
1811 2706 7.799081 TCATCATCTACTTTGATTGGTCAGAT 58.201 34.615 0.00 0.00 35.39 2.90
1813 2708 7.011202 CACTCATCATCTACTTTGATTGGTCAG 59.989 40.741 0.00 0.00 35.39 3.51
1814 2709 6.820152 CACTCATCATCTACTTTGATTGGTCA 59.180 38.462 0.00 0.00 31.50 4.02
1815 2710 6.259608 CCACTCATCATCTACTTTGATTGGTC 59.740 42.308 0.00 0.00 35.40 4.02
1816 2711 6.118170 CCACTCATCATCTACTTTGATTGGT 58.882 40.000 0.00 0.00 35.40 3.67
1817 2712 6.037940 CACCACTCATCATCTACTTTGATTGG 59.962 42.308 6.61 6.61 41.87 3.16
1819 2714 6.950842 TCACCACTCATCATCTACTTTGATT 58.049 36.000 0.00 0.00 31.50 2.57
1821 2716 6.358974 TTCACCACTCATCATCTACTTTGA 57.641 37.500 0.00 0.00 0.00 2.69
1822 2717 7.621428 ATTTCACCACTCATCATCTACTTTG 57.379 36.000 0.00 0.00 0.00 2.77
1823 2718 9.911788 AATATTTCACCACTCATCATCTACTTT 57.088 29.630 0.00 0.00 0.00 2.66
1824 2719 9.911788 AAATATTTCACCACTCATCATCTACTT 57.088 29.630 0.00 0.00 0.00 2.24
1825 2720 9.911788 AAAATATTTCACCACTCATCATCTACT 57.088 29.630 0.10 0.00 0.00 2.57
1828 2723 8.400947 CGAAAAATATTTCACCACTCATCATCT 58.599 33.333 0.10 0.00 44.24 2.90
1829 2724 8.184192 ACGAAAAATATTTCACCACTCATCATC 58.816 33.333 0.10 0.00 44.24 2.92
1830 2725 7.970061 CACGAAAAATATTTCACCACTCATCAT 59.030 33.333 0.10 0.00 44.24 2.45
1833 2728 7.447374 TCACGAAAAATATTTCACCACTCAT 57.553 32.000 0.10 0.00 44.24 2.90
1834 2729 6.869315 TCACGAAAAATATTTCACCACTCA 57.131 33.333 0.10 0.00 44.24 3.41
1835 2730 8.638565 CAAATCACGAAAAATATTTCACCACTC 58.361 33.333 0.10 0.00 44.24 3.51
1836 2731 8.141268 ACAAATCACGAAAAATATTTCACCACT 58.859 29.630 0.10 0.00 44.24 4.00
1837 2732 8.293114 ACAAATCACGAAAAATATTTCACCAC 57.707 30.769 0.10 0.00 44.24 4.16
1838 2733 9.967346 TTACAAATCACGAAAAATATTTCACCA 57.033 25.926 0.10 0.00 44.24 4.17
1845 2740 9.691362 AGTGCTTTTACAAATCACGAAAAATAT 57.309 25.926 0.00 0.00 33.28 1.28
1846 2741 9.176181 GAGTGCTTTTACAAATCACGAAAAATA 57.824 29.630 0.00 0.00 33.28 1.40
1847 2742 7.704472 TGAGTGCTTTTACAAATCACGAAAAAT 59.296 29.630 0.00 0.00 33.28 1.82
1848 2743 7.030165 TGAGTGCTTTTACAAATCACGAAAAA 58.970 30.769 0.00 0.00 33.28 1.94
1849 2744 6.556212 TGAGTGCTTTTACAAATCACGAAAA 58.444 32.000 0.00 0.00 33.28 2.29
1850 2745 6.125327 TGAGTGCTTTTACAAATCACGAAA 57.875 33.333 0.00 0.00 33.28 3.46
1851 2746 5.743026 TGAGTGCTTTTACAAATCACGAA 57.257 34.783 0.00 0.00 33.28 3.85
1852 2747 5.743026 TTGAGTGCTTTTACAAATCACGA 57.257 34.783 0.00 0.00 33.28 4.35
1853 2748 6.991485 AATTGAGTGCTTTTACAAATCACG 57.009 33.333 0.00 0.00 33.28 4.35
1855 2750 8.924691 GCATTAATTGAGTGCTTTTACAAATCA 58.075 29.630 4.80 0.00 36.02 2.57
1856 2751 8.924691 TGCATTAATTGAGTGCTTTTACAAATC 58.075 29.630 11.22 0.00 39.52 2.17
1857 2752 8.830201 TGCATTAATTGAGTGCTTTTACAAAT 57.170 26.923 11.22 0.00 39.52 2.32
1858 2753 8.830201 ATGCATTAATTGAGTGCTTTTACAAA 57.170 26.923 0.00 0.00 39.52 2.83
1859 2754 8.830201 AATGCATTAATTGAGTGCTTTTACAA 57.170 26.923 11.02 0.00 39.52 2.41
1860 2755 8.710551 CAAATGCATTAATTGAGTGCTTTTACA 58.289 29.630 13.39 0.00 41.37 2.41
1861 2756 8.711457 ACAAATGCATTAATTGAGTGCTTTTAC 58.289 29.630 13.39 0.00 41.37 2.01
1862 2757 8.830201 ACAAATGCATTAATTGAGTGCTTTTA 57.170 26.923 13.39 1.10 41.37 1.52
1863 2758 7.733402 ACAAATGCATTAATTGAGTGCTTTT 57.267 28.000 13.39 14.14 42.92 2.27
1864 2759 7.733402 AACAAATGCATTAATTGAGTGCTTT 57.267 28.000 13.39 8.89 39.52 3.51
1865 2760 7.733402 AAACAAATGCATTAATTGAGTGCTT 57.267 28.000 13.39 0.18 39.52 3.91
1866 2761 8.830201 TTAAACAAATGCATTAATTGAGTGCT 57.170 26.923 13.39 0.00 39.52 4.40
1867 2762 9.875675 TTTTAAACAAATGCATTAATTGAGTGC 57.124 25.926 13.39 5.03 39.26 4.40
1927 2822 5.313712 TCATCATCTACTTCATGCATGCAT 58.686 37.500 27.46 27.46 37.08 3.96
1928 2823 4.710324 TCATCATCTACTTCATGCATGCA 58.290 39.130 25.04 25.04 0.00 3.96
1929 2824 4.755629 ACTCATCATCTACTTCATGCATGC 59.244 41.667 22.25 11.82 0.00 4.06
1930 2825 8.443937 CAATACTCATCATCTACTTCATGCATG 58.556 37.037 21.07 21.07 0.00 4.06
1931 2826 8.373220 TCAATACTCATCATCTACTTCATGCAT 58.627 33.333 0.00 0.00 0.00 3.96
1932 2827 7.729116 TCAATACTCATCATCTACTTCATGCA 58.271 34.615 0.00 0.00 0.00 3.96
1933 2828 8.774890 ATCAATACTCATCATCTACTTCATGC 57.225 34.615 0.00 0.00 0.00 4.06
1934 2829 9.924650 TGATCAATACTCATCATCTACTTCATG 57.075 33.333 0.00 0.00 0.00 3.07
1936 2831 9.978044 CTTGATCAATACTCATCATCTACTTCA 57.022 33.333 8.96 0.00 0.00 3.02
1937 2832 9.979578 ACTTGATCAATACTCATCATCTACTTC 57.020 33.333 8.96 0.00 0.00 3.01
1938 2833 9.979578 GACTTGATCAATACTCATCATCTACTT 57.020 33.333 8.96 0.00 0.00 2.24
1939 2834 9.365906 AGACTTGATCAATACTCATCATCTACT 57.634 33.333 8.96 0.00 0.00 2.57
1940 2835 9.624697 GAGACTTGATCAATACTCATCATCTAC 57.375 37.037 24.40 6.53 0.00 2.59
1941 2836 9.585369 AGAGACTTGATCAATACTCATCATCTA 57.415 33.333 27.80 0.82 0.00 1.98
1942 2837 8.481492 AGAGACTTGATCAATACTCATCATCT 57.519 34.615 27.80 14.12 0.00 2.90
1943 2838 8.358895 TGAGAGACTTGATCAATACTCATCATC 58.641 37.037 27.80 21.01 0.00 2.92
1944 2839 8.247666 TGAGAGACTTGATCAATACTCATCAT 57.752 34.615 27.80 16.34 0.00 2.45
1945 2840 7.651027 TGAGAGACTTGATCAATACTCATCA 57.349 36.000 27.80 24.50 0.00 3.07
1949 2844 9.638239 GGATTATGAGAGACTTGATCAATACTC 57.362 37.037 23.04 23.04 0.00 2.59
1950 2845 9.378504 AGGATTATGAGAGACTTGATCAATACT 57.621 33.333 8.96 11.01 0.00 2.12
1951 2846 9.995003 AAGGATTATGAGAGACTTGATCAATAC 57.005 33.333 8.96 6.28 0.00 1.89
1952 2847 9.993454 CAAGGATTATGAGAGACTTGATCAATA 57.007 33.333 8.96 0.00 37.98 1.90
1953 2848 7.444792 GCAAGGATTATGAGAGACTTGATCAAT 59.555 37.037 8.96 0.00 37.98 2.57
1954 2849 6.765036 GCAAGGATTATGAGAGACTTGATCAA 59.235 38.462 8.12 8.12 37.98 2.57
1955 2850 6.126968 TGCAAGGATTATGAGAGACTTGATCA 60.127 38.462 0.00 0.00 37.98 2.92
1956 2851 6.286758 TGCAAGGATTATGAGAGACTTGATC 58.713 40.000 0.00 0.00 37.98 2.92
1957 2852 6.244552 TGCAAGGATTATGAGAGACTTGAT 57.755 37.500 0.00 0.00 37.98 2.57
1958 2853 5.682234 TGCAAGGATTATGAGAGACTTGA 57.318 39.130 0.00 0.00 37.98 3.02
1959 2854 5.277876 GCATGCAAGGATTATGAGAGACTTG 60.278 44.000 14.21 0.00 38.57 3.16
1960 2855 4.820716 GCATGCAAGGATTATGAGAGACTT 59.179 41.667 14.21 0.00 0.00 3.01
1961 2856 4.141551 TGCATGCAAGGATTATGAGAGACT 60.142 41.667 20.30 0.00 0.00 3.24
1962 2857 4.132336 TGCATGCAAGGATTATGAGAGAC 58.868 43.478 20.30 0.00 0.00 3.36
1963 2858 4.426736 TGCATGCAAGGATTATGAGAGA 57.573 40.909 20.30 0.00 0.00 3.10
1964 2859 5.240844 TCATTGCATGCAAGGATTATGAGAG 59.759 40.000 36.30 15.19 41.00 3.20
1965 2860 5.134661 TCATTGCATGCAAGGATTATGAGA 58.865 37.500 36.30 17.30 41.00 3.27
1966 2861 5.447624 TCATTGCATGCAAGGATTATGAG 57.552 39.130 36.30 17.77 41.00 2.90
1967 2862 5.855740 TTCATTGCATGCAAGGATTATGA 57.144 34.783 38.83 30.19 44.42 2.15
1968 2863 8.596271 TTAATTCATTGCATGCAAGGATTATG 57.404 30.769 38.83 28.71 44.42 1.90
1969 2864 9.214957 CATTAATTCATTGCATGCAAGGATTAT 57.785 29.630 38.83 29.52 44.42 1.28
1970 2865 7.171848 GCATTAATTCATTGCATGCAAGGATTA 59.828 33.333 38.83 31.85 44.42 1.75
1971 2866 6.017440 GCATTAATTCATTGCATGCAAGGATT 60.017 34.615 38.83 32.90 44.42 3.01
1972 2867 5.468746 GCATTAATTCATTGCATGCAAGGAT 59.531 36.000 38.83 29.59 44.42 3.24
1973 2868 4.812091 GCATTAATTCATTGCATGCAAGGA 59.188 37.500 36.30 36.30 43.57 3.36
1974 2869 4.572795 TGCATTAATTCATTGCATGCAAGG 59.427 37.500 33.26 33.26 41.14 3.61
1975 2870 5.293324 AGTGCATTAATTCATTGCATGCAAG 59.707 36.000 34.15 25.40 46.90 4.01
1976 2871 5.179533 AGTGCATTAATTCATTGCATGCAA 58.820 33.333 33.57 33.57 46.90 4.08
1977 2872 4.760878 AGTGCATTAATTCATTGCATGCA 58.239 34.783 18.46 18.46 46.90 3.96
1978 2873 5.728351 AAGTGCATTAATTCATTGCATGC 57.272 34.783 11.82 11.82 46.90 4.06
1979 2874 7.297229 TCAAAGTGCATTAATTCATTGCATG 57.703 32.000 11.56 7.60 46.90 4.06
1980 2875 7.908827 TTCAAAGTGCATTAATTCATTGCAT 57.091 28.000 11.56 0.00 46.90 3.96
1981 2876 7.725818 TTTCAAAGTGCATTAATTCATTGCA 57.274 28.000 5.94 5.94 43.63 4.08
1982 2877 8.662141 AGATTTCAAAGTGCATTAATTCATTGC 58.338 29.630 0.00 0.00 36.91 3.56
1983 2878 9.967245 CAGATTTCAAAGTGCATTAATTCATTG 57.033 29.630 0.00 0.00 0.00 2.82
1984 2879 9.932207 TCAGATTTCAAAGTGCATTAATTCATT 57.068 25.926 0.00 0.00 0.00 2.57
1985 2880 9.582431 CTCAGATTTCAAAGTGCATTAATTCAT 57.418 29.630 0.00 0.00 0.00 2.57
1986 2881 7.543172 GCTCAGATTTCAAAGTGCATTAATTCA 59.457 33.333 0.00 0.00 0.00 2.57
1987 2882 7.543172 TGCTCAGATTTCAAAGTGCATTAATTC 59.457 33.333 0.00 0.00 0.00 2.17
1988 2883 7.380536 TGCTCAGATTTCAAAGTGCATTAATT 58.619 30.769 0.00 0.00 0.00 1.40
1989 2884 6.927416 TGCTCAGATTTCAAAGTGCATTAAT 58.073 32.000 0.00 0.00 0.00 1.40
1990 2885 6.330004 TGCTCAGATTTCAAAGTGCATTAA 57.670 33.333 0.00 0.00 0.00 1.40
1991 2886 5.963176 TGCTCAGATTTCAAAGTGCATTA 57.037 34.783 0.00 0.00 0.00 1.90
1992 2887 4.859304 TGCTCAGATTTCAAAGTGCATT 57.141 36.364 0.00 0.00 0.00 3.56
1993 2888 4.219944 ACATGCTCAGATTTCAAAGTGCAT 59.780 37.500 0.00 0.00 40.53 3.96
1994 2889 3.570975 ACATGCTCAGATTTCAAAGTGCA 59.429 39.130 0.00 0.00 35.36 4.57
1995 2890 3.918591 CACATGCTCAGATTTCAAAGTGC 59.081 43.478 0.00 0.00 0.00 4.40
1996 2891 5.366829 TCACATGCTCAGATTTCAAAGTG 57.633 39.130 0.00 0.00 0.00 3.16
1997 2892 5.105877 CCATCACATGCTCAGATTTCAAAGT 60.106 40.000 0.00 0.00 0.00 2.66
1998 2893 5.124936 TCCATCACATGCTCAGATTTCAAAG 59.875 40.000 0.00 0.00 0.00 2.77
1999 2894 5.011586 TCCATCACATGCTCAGATTTCAAA 58.988 37.500 0.00 0.00 0.00 2.69
2000 2895 4.591929 TCCATCACATGCTCAGATTTCAA 58.408 39.130 0.00 0.00 0.00 2.69
2001 2896 4.224991 TCCATCACATGCTCAGATTTCA 57.775 40.909 0.00 0.00 0.00 2.69
2002 2897 5.106038 TGTTTCCATCACATGCTCAGATTTC 60.106 40.000 0.00 0.00 0.00 2.17
2003 2898 4.768448 TGTTTCCATCACATGCTCAGATTT 59.232 37.500 0.00 0.00 0.00 2.17
2004 2899 4.338012 TGTTTCCATCACATGCTCAGATT 58.662 39.130 0.00 0.00 0.00 2.40
2005 2900 3.959293 TGTTTCCATCACATGCTCAGAT 58.041 40.909 0.00 0.00 0.00 2.90
2006 2901 3.421919 TGTTTCCATCACATGCTCAGA 57.578 42.857 0.00 0.00 0.00 3.27
2007 2902 4.157105 TGATTGTTTCCATCACATGCTCAG 59.843 41.667 0.00 0.00 0.00 3.35
2008 2903 4.080687 TGATTGTTTCCATCACATGCTCA 58.919 39.130 0.00 0.00 0.00 4.26
2009 2904 4.707030 TGATTGTTTCCATCACATGCTC 57.293 40.909 0.00 0.00 0.00 4.26
2010 2905 5.471556 TTTGATTGTTTCCATCACATGCT 57.528 34.783 0.00 0.00 0.00 3.79
2011 2906 6.369340 TCAATTTGATTGTTTCCATCACATGC 59.631 34.615 0.00 0.00 41.02 4.06
2012 2907 7.815549 TCTCAATTTGATTGTTTCCATCACATG 59.184 33.333 0.00 0.00 41.02 3.21
2013 2908 7.816031 GTCTCAATTTGATTGTTTCCATCACAT 59.184 33.333 0.00 0.00 41.02 3.21
2014 2909 7.014518 AGTCTCAATTTGATTGTTTCCATCACA 59.985 33.333 0.00 0.00 41.02 3.58
2015 2910 7.373493 AGTCTCAATTTGATTGTTTCCATCAC 58.627 34.615 0.00 0.00 41.02 3.06
2016 2911 7.528996 AGTCTCAATTTGATTGTTTCCATCA 57.471 32.000 0.00 0.00 41.02 3.07
2024 2919 9.840427 CCGTTTTATAAGTCTCAATTTGATTGT 57.160 29.630 0.00 0.00 41.02 2.71
2030 2925 9.687210 GGTTTTCCGTTTTATAAGTCTCAATTT 57.313 29.630 0.00 0.00 0.00 1.82
2049 2944 7.148639 GGCTTATCTCAAAAATTTCGGTTTTCC 60.149 37.037 0.00 0.00 31.29 3.13
2050 2945 7.598869 AGGCTTATCTCAAAAATTTCGGTTTTC 59.401 33.333 0.00 0.00 31.29 2.29
2051 2946 7.441836 AGGCTTATCTCAAAAATTTCGGTTTT 58.558 30.769 0.00 0.00 32.94 2.43
2052 2947 6.993079 AGGCTTATCTCAAAAATTTCGGTTT 58.007 32.000 0.00 0.00 0.00 3.27
2053 2948 6.590234 AGGCTTATCTCAAAAATTTCGGTT 57.410 33.333 0.00 0.00 0.00 4.44
2054 2949 6.590234 AAGGCTTATCTCAAAAATTTCGGT 57.410 33.333 0.00 0.00 0.00 4.69
2060 2955 8.630037 CCGGTTTATAAGGCTTATCTCAAAAAT 58.370 33.333 22.39 0.88 0.00 1.82
2061 2956 7.067737 CCCGGTTTATAAGGCTTATCTCAAAAA 59.932 37.037 22.39 14.03 0.00 1.94
2062 2957 6.544564 CCCGGTTTATAAGGCTTATCTCAAAA 59.455 38.462 22.39 14.37 0.00 2.44
2063 2958 6.059484 CCCGGTTTATAAGGCTTATCTCAAA 58.941 40.000 22.39 14.69 0.00 2.69
2064 2959 5.367352 TCCCGGTTTATAAGGCTTATCTCAA 59.633 40.000 22.39 9.63 0.00 3.02
2065 2960 4.903049 TCCCGGTTTATAAGGCTTATCTCA 59.097 41.667 22.39 3.59 0.00 3.27
2066 2961 5.479124 TCCCGGTTTATAAGGCTTATCTC 57.521 43.478 22.39 13.49 0.00 2.75
2067 2962 5.221864 CCTTCCCGGTTTATAAGGCTTATCT 60.222 44.000 22.39 4.32 32.66 1.98
2068 2963 5.001874 CCTTCCCGGTTTATAAGGCTTATC 58.998 45.833 22.39 9.18 32.66 1.75
2069 2964 4.661709 TCCTTCCCGGTTTATAAGGCTTAT 59.338 41.667 22.36 22.36 38.70 1.73
2070 2965 4.039339 TCCTTCCCGGTTTATAAGGCTTA 58.961 43.478 9.79 9.79 38.70 3.09
2071 2966 2.848071 TCCTTCCCGGTTTATAAGGCTT 59.152 45.455 4.58 4.58 38.70 4.35
2072 2967 2.438392 CTCCTTCCCGGTTTATAAGGCT 59.562 50.000 0.00 0.00 38.70 4.58
2073 2968 2.486727 CCTCCTTCCCGGTTTATAAGGC 60.487 54.545 0.00 0.00 38.70 4.35
2074 2969 2.105993 CCCTCCTTCCCGGTTTATAAGG 59.894 54.545 0.00 5.61 39.93 2.69
2075 2970 3.043418 TCCCTCCTTCCCGGTTTATAAG 58.957 50.000 0.00 0.00 0.00 1.73
2076 2971 3.043418 CTCCCTCCTTCCCGGTTTATAA 58.957 50.000 0.00 0.00 0.00 0.98
2077 2972 2.022722 ACTCCCTCCTTCCCGGTTTATA 60.023 50.000 0.00 0.00 0.00 0.98
2078 2973 1.274242 ACTCCCTCCTTCCCGGTTTAT 60.274 52.381 0.00 0.00 0.00 1.40
2079 2974 0.117742 ACTCCCTCCTTCCCGGTTTA 59.882 55.000 0.00 0.00 0.00 2.01
2080 2975 0.117742 TACTCCCTCCTTCCCGGTTT 59.882 55.000 0.00 0.00 0.00 3.27
2081 2976 0.325390 CTACTCCCTCCTTCCCGGTT 60.325 60.000 0.00 0.00 0.00 4.44
2082 2977 1.219824 TCTACTCCCTCCTTCCCGGT 61.220 60.000 0.00 0.00 0.00 5.28
2083 2978 0.188834 ATCTACTCCCTCCTTCCCGG 59.811 60.000 0.00 0.00 0.00 5.73
2084 2979 1.689273 CAATCTACTCCCTCCTTCCCG 59.311 57.143 0.00 0.00 0.00 5.14
2085 2980 1.418264 GCAATCTACTCCCTCCTTCCC 59.582 57.143 0.00 0.00 0.00 3.97
2086 2981 2.403561 AGCAATCTACTCCCTCCTTCC 58.596 52.381 0.00 0.00 0.00 3.46
2087 2982 5.816955 ATAAGCAATCTACTCCCTCCTTC 57.183 43.478 0.00 0.00 0.00 3.46
2088 2983 6.582929 AAATAAGCAATCTACTCCCTCCTT 57.417 37.500 0.00 0.00 0.00 3.36
2089 2984 6.615726 TGTAAATAAGCAATCTACTCCCTCCT 59.384 38.462 0.00 0.00 0.00 3.69
2090 2985 6.706716 GTGTAAATAAGCAATCTACTCCCTCC 59.293 42.308 0.00 0.00 0.00 4.30
2091 2986 6.706716 GGTGTAAATAAGCAATCTACTCCCTC 59.293 42.308 0.00 0.00 0.00 4.30
2092 2987 6.409349 GGGTGTAAATAAGCAATCTACTCCCT 60.409 42.308 12.23 0.00 40.64 4.20
2093 2988 5.763698 GGGTGTAAATAAGCAATCTACTCCC 59.236 44.000 6.83 6.83 38.45 4.30
2094 2989 6.354130 TGGGTGTAAATAAGCAATCTACTCC 58.646 40.000 0.00 0.00 0.00 3.85
2095 2990 7.715249 TGATGGGTGTAAATAAGCAATCTACTC 59.285 37.037 0.00 0.00 0.00 2.59
2096 2991 7.573710 TGATGGGTGTAAATAAGCAATCTACT 58.426 34.615 0.00 0.00 0.00 2.57
2097 2992 7.801716 TGATGGGTGTAAATAAGCAATCTAC 57.198 36.000 0.00 0.00 0.00 2.59
2098 2993 8.995027 ATTGATGGGTGTAAATAAGCAATCTA 57.005 30.769 0.00 0.00 0.00 1.98
2099 2994 7.902920 ATTGATGGGTGTAAATAAGCAATCT 57.097 32.000 0.00 0.00 0.00 2.40
2109 3004 9.480861 TGGACAATAATAATTGATGGGTGTAAA 57.519 29.630 5.18 0.00 44.50 2.01
2110 3005 9.653516 ATGGACAATAATAATTGATGGGTGTAA 57.346 29.630 5.18 0.00 44.50 2.41
2111 3006 9.076781 CATGGACAATAATAATTGATGGGTGTA 57.923 33.333 5.18 0.00 44.50 2.90
2112 3007 7.784073 TCATGGACAATAATAATTGATGGGTGT 59.216 33.333 5.18 0.00 44.50 4.16
2113 3008 8.180706 TCATGGACAATAATAATTGATGGGTG 57.819 34.615 5.18 0.00 44.50 4.61
2114 3009 8.780616 TTCATGGACAATAATAATTGATGGGT 57.219 30.769 5.18 0.00 44.50 4.51
2115 3010 9.865321 GATTCATGGACAATAATAATTGATGGG 57.135 33.333 5.18 0.00 44.50 4.00
2116 3011 9.865321 GGATTCATGGACAATAATAATTGATGG 57.135 33.333 5.18 0.00 44.50 3.51
2215 3113 1.735018 TGTCAACCAACAGTGACGTTG 59.265 47.619 11.46 11.46 44.78 4.10
2236 3134 5.349543 GTCCAAATCCATCATTTTCACAAGC 59.650 40.000 0.00 0.00 31.79 4.01
2292 5485 3.428413 AAAAATAGTGCGGGGTGTAGT 57.572 42.857 0.00 0.00 0.00 2.73
2311 5504 8.316214 ACGAATACAGTATGGAGTTCCTAAAAA 58.684 33.333 0.00 0.00 43.62 1.94
2316 5509 4.341520 GGACGAATACAGTATGGAGTTCCT 59.658 45.833 0.00 0.00 43.62 3.36
2317 5510 4.098960 TGGACGAATACAGTATGGAGTTCC 59.901 45.833 0.00 0.00 43.62 3.62
2318 5511 5.258456 TGGACGAATACAGTATGGAGTTC 57.742 43.478 0.00 0.00 43.62 3.01
2320 5513 5.871396 AATGGACGAATACAGTATGGAGT 57.129 39.130 0.00 0.00 43.62 3.85
2321 5514 6.018751 CACAAATGGACGAATACAGTATGGAG 60.019 42.308 0.00 0.00 43.62 3.86
2322 5515 5.815222 CACAAATGGACGAATACAGTATGGA 59.185 40.000 0.00 0.00 43.62 3.41
2323 5516 5.504010 GCACAAATGGACGAATACAGTATGG 60.504 44.000 0.00 0.00 43.62 2.74
2325 5518 5.294306 CAGCACAAATGGACGAATACAGTAT 59.706 40.000 0.00 0.00 0.00 2.12
2342 5538 0.819259 GCCAGTTCTGGTCAGCACAA 60.819 55.000 18.42 0.00 0.00 3.33
2347 5543 1.572085 CGCTTGCCAGTTCTGGTCAG 61.572 60.000 18.42 14.93 0.00 3.51
2376 5572 6.148976 GCCCGTTCTTTGTATCTACTCTTTTT 59.851 38.462 0.00 0.00 0.00 1.94
2377 5573 5.642491 GCCCGTTCTTTGTATCTACTCTTTT 59.358 40.000 0.00 0.00 0.00 2.27
2378 5574 5.176592 GCCCGTTCTTTGTATCTACTCTTT 58.823 41.667 0.00 0.00 0.00 2.52
2379 5575 4.222145 TGCCCGTTCTTTGTATCTACTCTT 59.778 41.667 0.00 0.00 0.00 2.85
2381 5577 4.119442 TGCCCGTTCTTTGTATCTACTC 57.881 45.455 0.00 0.00 0.00 2.59
2383 5579 3.373130 GGTTGCCCGTTCTTTGTATCTAC 59.627 47.826 0.00 0.00 0.00 2.59
2385 5581 2.433436 GGTTGCCCGTTCTTTGTATCT 58.567 47.619 0.00 0.00 0.00 1.98
2386 5582 2.913777 GGTTGCCCGTTCTTTGTATC 57.086 50.000 0.00 0.00 0.00 2.24
2408 5604 1.364626 CGTGTCGTCGCTAGGGTAGT 61.365 60.000 6.70 0.00 0.00 2.73
2421 5617 6.823531 TGAATTTCCAAATTAGTACGTGTCG 58.176 36.000 0.00 0.00 38.64 4.35
2444 6109 7.447374 TGTAGGTCCAATTGTTCATAGTTTG 57.553 36.000 4.43 0.00 0.00 2.93
2446 6111 6.095440 GCATGTAGGTCCAATTGTTCATAGTT 59.905 38.462 4.43 0.00 0.00 2.24
2522 7294 6.183360 ACAATTGTTTTACTGTTTACCGCTCA 60.183 34.615 4.92 0.00 0.00 4.26
2523 7295 6.203647 ACAATTGTTTTACTGTTTACCGCTC 58.796 36.000 4.92 0.00 0.00 5.03
2613 7385 4.479158 TGCACCCCTTGTTTATCTTCTTT 58.521 39.130 0.00 0.00 0.00 2.52
2614 7386 4.112634 TGCACCCCTTGTTTATCTTCTT 57.887 40.909 0.00 0.00 0.00 2.52
2615 7387 3.806949 TGCACCCCTTGTTTATCTTCT 57.193 42.857 0.00 0.00 0.00 2.85
2616 7388 3.826729 AGTTGCACCCCTTGTTTATCTTC 59.173 43.478 0.00 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.