Multiple sequence alignment - TraesCS5A01G309400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G309400 chr5A 100.000 3125 0 0 1 3125 521767555 521770679 0.000000e+00 5771.0
1 TraesCS5A01G309400 chr5A 76.389 720 116 30 1259 1945 521859996 521860694 3.860000e-89 339.0
2 TraesCS5A01G309400 chr5A 89.305 187 19 1 1033 1219 521797855 521798040 1.870000e-57 233.0
3 TraesCS5A01G309400 chr5A 74.617 457 77 19 1261 1687 521757335 521756888 6.930000e-37 165.0
4 TraesCS5A01G309400 chr5A 76.568 303 58 9 52 344 547505298 547504999 1.500000e-33 154.0
5 TraesCS5A01G309400 chr5D 92.881 1784 97 15 632 2396 410346327 410348099 0.000000e+00 2564.0
6 TraesCS5A01G309400 chr5D 88.022 1077 111 11 1037 2100 410302764 410303835 0.000000e+00 1258.0
7 TraesCS5A01G309400 chr5D 83.186 565 88 3 1 563 410345771 410346330 7.730000e-141 510.0
8 TraesCS5A01G309400 chr5D 73.626 455 78 24 1262 1686 410250231 410250673 1.510000e-28 137.0
9 TraesCS5A01G309400 chr5D 95.833 48 2 0 1263 1310 551093909 551093956 9.290000e-11 78.7
10 TraesCS5A01G309400 chr5B 91.297 1781 127 12 632 2396 492262514 492264282 0.000000e+00 2405.0
11 TraesCS5A01G309400 chr5B 86.004 1086 125 12 1037 2100 492256798 492257878 0.000000e+00 1138.0
12 TraesCS5A01G309400 chr5B 84.071 565 83 3 1 563 492261958 492262517 3.550000e-149 538.0
13 TraesCS5A01G309400 chr5B 88.172 186 22 0 1034 1219 492373327 492373512 4.060000e-54 222.0
14 TraesCS5A01G309400 chr5B 73.752 701 116 39 1038 1687 492092750 492093433 2.440000e-51 213.0
15 TraesCS5A01G309400 chr5B 76.111 360 64 13 1404 1748 492106965 492107317 5.360000e-38 169.0
16 TraesCS5A01G309400 chr5B 81.752 137 20 5 2102 2237 492258185 492258317 3.300000e-20 110.0
17 TraesCS5A01G309400 chr5B 79.167 144 21 4 1409 1546 699394839 699394979 1.190000e-14 91.6
18 TraesCS5A01G309400 chr5B 78.767 146 22 4 1409 1548 703507234 703507376 4.290000e-14 89.8
19 TraesCS5A01G309400 chr4A 86.398 669 80 9 2457 3122 607289591 607290251 0.000000e+00 721.0
20 TraesCS5A01G309400 chr2D 84.286 630 93 5 2499 3125 306256484 306255858 7.410000e-171 610.0
21 TraesCS5A01G309400 chr2D 86.544 379 49 2 2745 3121 176065271 176065649 1.730000e-112 416.0
22 TraesCS5A01G309400 chr2D 79.104 536 106 6 3 534 14521788 14521255 6.370000e-97 364.0
23 TraesCS5A01G309400 chr2D 78.534 382 75 7 140 518 159596089 159596466 8.660000e-61 244.0
24 TraesCS5A01G309400 chr2D 75.940 532 88 25 1037 1545 613237835 613237321 1.450000e-58 237.0
25 TraesCS5A01G309400 chr1A 84.051 627 97 3 2499 3123 405824775 405825400 4.460000e-168 601.0
26 TraesCS5A01G309400 chr1A 89.244 344 35 2 2782 3123 469826831 469827174 2.230000e-116 429.0
27 TraesCS5A01G309400 chr1A 80.682 264 43 5 2462 2721 148604987 148605246 6.840000e-47 198.0
28 TraesCS5A01G309400 chr3B 84.590 597 69 9 2530 3125 729200096 729200670 3.500000e-159 571.0
29 TraesCS5A01G309400 chr3B 91.549 71 3 2 562 630 82442977 82443046 9.230000e-16 95.3
30 TraesCS5A01G309400 chr6B 80.635 630 104 11 2499 3116 18282974 18282351 3.650000e-129 472.0
31 TraesCS5A01G309400 chr7B 85.746 449 57 5 2680 3125 600698892 600699336 4.720000e-128 468.0
32 TraesCS5A01G309400 chr7B 83.857 223 26 8 1034 1254 538050850 538050636 1.470000e-48 204.0
33 TraesCS5A01G309400 chr7B 85.211 142 20 1 2531 2672 600658360 600658500 9.030000e-31 145.0
34 TraesCS5A01G309400 chr6D 80.193 621 98 9 2506 3123 439172238 439171640 2.860000e-120 442.0
35 TraesCS5A01G309400 chr6D 82.443 262 36 7 2462 2719 61191364 61191109 1.460000e-53 220.0
36 TraesCS5A01G309400 chr7A 82.480 508 82 7 2620 3123 112448234 112448738 3.700000e-119 438.0
37 TraesCS5A01G309400 chr4D 76.967 521 107 11 12 523 49887357 49886841 5.100000e-73 285.0
38 TraesCS5A01G309400 chr3A 77.131 481 98 8 12 489 71806274 71805803 5.140000e-68 268.0
39 TraesCS5A01G309400 chr3A 77.131 481 98 8 12 489 71866223 71866694 5.140000e-68 268.0
40 TraesCS5A01G309400 chr4B 76.520 477 92 18 82 548 86991919 86992385 3.110000e-60 243.0
41 TraesCS5A01G309400 chr6A 75.000 540 117 18 6 534 448068024 448067492 1.870000e-57 233.0
42 TraesCS5A01G309400 chr6A 87.324 71 5 3 565 633 18936501 18936433 9.290000e-11 78.7
43 TraesCS5A01G309400 chr2A 74.691 486 107 10 13 489 82341513 82341991 5.280000e-48 202.0
44 TraesCS5A01G309400 chr2B 90.345 145 12 2 1034 1177 748703398 748703541 4.110000e-44 189.0
45 TraesCS5A01G309400 chr3D 86.624 157 19 2 2592 2748 481894537 481894383 4.140000e-39 172.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G309400 chr5A 521767555 521770679 3124 False 5771.00 5771 100.0000 1 3125 1 chr5A.!!$F1 3124
1 TraesCS5A01G309400 chr5A 521859996 521860694 698 False 339.00 339 76.3890 1259 1945 1 chr5A.!!$F3 686
2 TraesCS5A01G309400 chr5D 410345771 410348099 2328 False 1537.00 2564 88.0335 1 2396 2 chr5D.!!$F4 2395
3 TraesCS5A01G309400 chr5D 410302764 410303835 1071 False 1258.00 1258 88.0220 1037 2100 1 chr5D.!!$F2 1063
4 TraesCS5A01G309400 chr5B 492256798 492264282 7484 False 1047.75 2405 85.7810 1 2396 4 chr5B.!!$F6 2395
5 TraesCS5A01G309400 chr5B 492092750 492093433 683 False 213.00 213 73.7520 1038 1687 1 chr5B.!!$F1 649
6 TraesCS5A01G309400 chr4A 607289591 607290251 660 False 721.00 721 86.3980 2457 3122 1 chr4A.!!$F1 665
7 TraesCS5A01G309400 chr2D 306255858 306256484 626 True 610.00 610 84.2860 2499 3125 1 chr2D.!!$R2 626
8 TraesCS5A01G309400 chr2D 14521255 14521788 533 True 364.00 364 79.1040 3 534 1 chr2D.!!$R1 531
9 TraesCS5A01G309400 chr2D 613237321 613237835 514 True 237.00 237 75.9400 1037 1545 1 chr2D.!!$R3 508
10 TraesCS5A01G309400 chr1A 405824775 405825400 625 False 601.00 601 84.0510 2499 3123 1 chr1A.!!$F2 624
11 TraesCS5A01G309400 chr3B 729200096 729200670 574 False 571.00 571 84.5900 2530 3125 1 chr3B.!!$F2 595
12 TraesCS5A01G309400 chr6B 18282351 18282974 623 True 472.00 472 80.6350 2499 3116 1 chr6B.!!$R1 617
13 TraesCS5A01G309400 chr6D 439171640 439172238 598 True 442.00 442 80.1930 2506 3123 1 chr6D.!!$R2 617
14 TraesCS5A01G309400 chr7A 112448234 112448738 504 False 438.00 438 82.4800 2620 3123 1 chr7A.!!$F1 503
15 TraesCS5A01G309400 chr4D 49886841 49887357 516 True 285.00 285 76.9670 12 523 1 chr4D.!!$R1 511
16 TraesCS5A01G309400 chr6A 448067492 448068024 532 True 233.00 233 75.0000 6 534 1 chr6A.!!$R2 528

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
240 5402 0.035739 GCGAAACCCTAACCTCACCA 59.964 55.0 0.0 0.0 0.0 4.17 F
866 6050 0.107654 AGAGCCAGTTATTGCGGTCC 60.108 55.0 0.0 0.0 0.0 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2013 7275 0.321653 AGCCCACACCGTTCATCTTC 60.322 55.0 0.0 0.0 0.0 2.87 R
2459 7726 0.468771 GGGGCTAGGTTAGGTCGCTA 60.469 60.0 0.0 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 5199 2.424705 GAACGACCACTACCGCCACA 62.425 60.000 0.00 0.00 0.00 4.17
47 5208 1.066143 ACTACCGCCACAAGAATGAGG 60.066 52.381 0.00 0.00 40.00 3.86
58 5219 1.138247 GAATGAGGTACCGACGCGT 59.862 57.895 13.85 13.85 0.00 6.01
91 5252 1.140312 CCCCTATTGGAGCCAGCTTA 58.860 55.000 0.00 0.00 35.39 3.09
107 5269 5.125417 GCCAGCTTAACCTTGTTGATGATAA 59.875 40.000 0.00 0.00 0.00 1.75
144 5306 1.078426 CGTGCCCCTAAGAACCAGG 60.078 63.158 0.00 0.00 0.00 4.45
177 5339 0.320073 GGTCGTCGTCATTGAACCCA 60.320 55.000 0.00 0.00 0.00 4.51
184 5346 4.511454 CGTCGTCATTGAACCCATGAATAT 59.489 41.667 0.00 0.00 0.00 1.28
211 5373 7.054124 TCTGAAATACCTGACACCAAATATCC 58.946 38.462 0.00 0.00 0.00 2.59
222 5384 3.002656 CACCAAATATCCTCACATGACGC 59.997 47.826 0.00 0.00 0.00 5.19
240 5402 0.035739 GCGAAACCCTAACCTCACCA 59.964 55.000 0.00 0.00 0.00 4.17
362 5525 0.603569 GTGTCGTCATCCACCTGAGT 59.396 55.000 0.00 0.00 0.00 3.41
370 5533 4.624364 CCACCTGAGTGCCGCACA 62.624 66.667 24.97 4.89 43.09 4.57
407 5570 4.440839 ACCCCGAACTAAACTACTAACG 57.559 45.455 0.00 0.00 0.00 3.18
455 5621 2.678580 TCACCATCCGTCGGAGCA 60.679 61.111 20.50 0.00 34.05 4.26
504 5672 2.707849 GCCGGCGAAGTCTGTAGGA 61.708 63.158 12.58 0.00 0.00 2.94
523 5692 2.124507 AAAGAGTTGCCCTAGCCGCA 62.125 55.000 0.00 0.00 38.69 5.69
524 5693 2.046314 GAGTTGCCCTAGCCGCAA 60.046 61.111 10.47 10.47 43.71 4.85
525 5694 2.045926 AGTTGCCCTAGCCGCAAG 60.046 61.111 13.88 0.00 46.34 4.01
559 5728 5.301141 AGGGAAGGGAAAGAGAAATCCTAT 58.699 41.667 0.00 0.00 35.95 2.57
560 5729 6.462342 AGGGAAGGGAAAGAGAAATCCTATA 58.538 40.000 0.00 0.00 35.95 1.31
561 5730 7.092223 AGGGAAGGGAAAGAGAAATCCTATAT 58.908 38.462 0.00 0.00 35.95 0.86
562 5731 7.578174 AGGGAAGGGAAAGAGAAATCCTATATT 59.422 37.037 0.00 0.00 35.95 1.28
563 5732 8.228206 GGGAAGGGAAAGAGAAATCCTATATTT 58.772 37.037 0.00 0.00 35.95 1.40
564 5733 9.647918 GGAAGGGAAAGAGAAATCCTATATTTT 57.352 33.333 0.00 0.00 35.95 1.82
585 5754 3.475566 TTTGAACAGTCACTGGAGAGG 57.524 47.619 10.28 0.00 35.51 3.69
586 5755 2.381752 TGAACAGTCACTGGAGAGGA 57.618 50.000 10.28 0.00 35.51 3.71
587 5756 2.242926 TGAACAGTCACTGGAGAGGAG 58.757 52.381 10.28 0.00 35.51 3.69
588 5757 2.158460 TGAACAGTCACTGGAGAGGAGA 60.158 50.000 10.28 0.00 35.51 3.71
589 5758 2.214376 ACAGTCACTGGAGAGGAGAG 57.786 55.000 10.28 0.00 35.51 3.20
590 5759 1.707989 ACAGTCACTGGAGAGGAGAGA 59.292 52.381 10.28 0.00 35.51 3.10
591 5760 2.109128 ACAGTCACTGGAGAGGAGAGAA 59.891 50.000 10.28 0.00 35.51 2.87
592 5761 3.245586 ACAGTCACTGGAGAGGAGAGAAT 60.246 47.826 10.28 0.00 35.51 2.40
593 5762 3.381272 CAGTCACTGGAGAGGAGAGAATC 59.619 52.174 0.00 0.00 0.00 2.52
602 5771 3.324246 GGAGAGAATCCCCACCTGA 57.676 57.895 0.00 0.00 43.01 3.86
603 5772 1.584724 GGAGAGAATCCCCACCTGAA 58.415 55.000 0.00 0.00 43.01 3.02
604 5773 2.131023 GGAGAGAATCCCCACCTGAAT 58.869 52.381 0.00 0.00 43.01 2.57
605 5774 3.318313 GGAGAGAATCCCCACCTGAATA 58.682 50.000 0.00 0.00 43.01 1.75
606 5775 3.913163 GGAGAGAATCCCCACCTGAATAT 59.087 47.826 0.00 0.00 43.01 1.28
607 5776 5.094387 GGAGAGAATCCCCACCTGAATATA 58.906 45.833 0.00 0.00 43.01 0.86
608 5777 5.728741 GGAGAGAATCCCCACCTGAATATAT 59.271 44.000 0.00 0.00 43.01 0.86
609 5778 6.216456 GGAGAGAATCCCCACCTGAATATATT 59.784 42.308 0.00 0.00 43.01 1.28
610 5779 7.025520 AGAGAATCCCCACCTGAATATATTG 57.974 40.000 1.78 0.00 33.66 1.90
611 5780 5.574188 AGAATCCCCACCTGAATATATTGC 58.426 41.667 1.78 0.00 0.00 3.56
612 5781 5.314306 AGAATCCCCACCTGAATATATTGCT 59.686 40.000 1.78 0.00 0.00 3.91
613 5782 4.640771 TCCCCACCTGAATATATTGCTC 57.359 45.455 1.78 0.00 0.00 4.26
614 5783 3.980022 TCCCCACCTGAATATATTGCTCA 59.020 43.478 1.78 0.00 0.00 4.26
615 5784 4.415179 TCCCCACCTGAATATATTGCTCAA 59.585 41.667 1.78 0.00 0.00 3.02
616 5785 5.103728 TCCCCACCTGAATATATTGCTCAAA 60.104 40.000 1.78 0.00 0.00 2.69
617 5786 5.242393 CCCCACCTGAATATATTGCTCAAAG 59.758 44.000 1.78 0.00 0.00 2.77
618 5787 5.278660 CCCACCTGAATATATTGCTCAAAGC 60.279 44.000 1.78 0.00 42.82 3.51
619 5788 5.533903 CCACCTGAATATATTGCTCAAAGCT 59.466 40.000 1.78 0.00 42.97 3.74
620 5789 6.436261 CACCTGAATATATTGCTCAAAGCTG 58.564 40.000 1.78 0.00 42.97 4.24
621 5790 5.009410 ACCTGAATATATTGCTCAAAGCTGC 59.991 40.000 1.78 0.00 42.97 5.25
622 5791 5.443185 TGAATATATTGCTCAAAGCTGCC 57.557 39.130 1.78 0.00 42.97 4.85
623 5792 4.888823 TGAATATATTGCTCAAAGCTGCCA 59.111 37.500 1.78 0.00 42.97 4.92
624 5793 5.360429 TGAATATATTGCTCAAAGCTGCCAA 59.640 36.000 1.78 0.00 42.97 4.52
625 5794 5.857471 ATATATTGCTCAAAGCTGCCAAA 57.143 34.783 0.00 0.00 42.97 3.28
626 5795 2.450609 ATTGCTCAAAGCTGCCAAAG 57.549 45.000 0.00 0.00 42.97 2.77
644 5813 5.678107 GCCAAAGCCATGATTAGTTCTCAAG 60.678 44.000 0.00 0.00 0.00 3.02
667 5836 1.270274 TGTGCACTGCCATGATGTTTC 59.730 47.619 19.41 0.00 0.00 2.78
738 5919 4.029972 CCGCAAAAACAAAACAAAACATGC 59.970 37.500 0.00 0.00 0.00 4.06
758 5939 1.677576 CATGCCGTTCTTGCCATGTAT 59.322 47.619 0.00 0.00 0.00 2.29
759 5940 2.700722 TGCCGTTCTTGCCATGTATA 57.299 45.000 0.00 0.00 0.00 1.47
769 5951 2.720915 TGCCATGTATAAGCTGTGCAA 58.279 42.857 0.00 0.00 0.00 4.08
820 6004 1.063006 CATTTGTGGGCGCATCGAG 59.937 57.895 10.83 0.00 0.00 4.04
866 6050 0.107654 AGAGCCAGTTATTGCGGTCC 60.108 55.000 0.00 0.00 0.00 4.46
882 6066 2.097466 CGGTCCAAAATCGGATCCAAAG 59.903 50.000 13.41 0.00 37.41 2.77
957 6141 0.681564 CAGTAGGGCTCGTGTCTCCT 60.682 60.000 0.00 0.00 0.00 3.69
960 6144 1.881324 GTAGGGCTCGTGTCTCCTATC 59.119 57.143 0.00 0.00 34.77 2.08
969 6153 3.640029 TCGTGTCTCCTATCCCCAATTAC 59.360 47.826 0.00 0.00 0.00 1.89
1484 6734 4.711949 CGTCCCCTGCAGCAGCTT 62.712 66.667 17.81 0.00 42.74 3.74
1490 6740 2.559840 CTGCAGCAGCTTCAACCG 59.440 61.111 10.14 0.00 42.74 4.44
1567 6823 2.295602 GCCCCCGGTAACAAGAGGA 61.296 63.158 0.00 0.00 0.00 3.71
1618 6874 1.487452 CGGCGTGACATATTGGGTCG 61.487 60.000 0.00 0.00 38.10 4.79
1707 6969 1.285950 GTCTTTGCCGTTTCTGCCC 59.714 57.895 0.00 0.00 0.00 5.36
1740 7002 0.966370 ACTACAGCCTGACCGAGGTC 60.966 60.000 14.98 14.98 44.97 3.85
1866 7128 2.264480 CACGAGATTCCACGGCCA 59.736 61.111 2.24 0.00 0.00 5.36
1912 7174 1.518903 GAAGTGTGAGGGGCAGTTGC 61.519 60.000 0.00 0.00 41.14 4.17
2013 7275 1.956629 ATAGGGGAGTGTTGGTCGCG 61.957 60.000 0.00 0.00 0.00 5.87
2052 7314 3.869832 GCTGGAGATTTAACTACCGAACC 59.130 47.826 0.00 0.00 0.00 3.62
2086 7348 3.287867 AGACATTGGAGCCATTAGGTG 57.712 47.619 0.00 0.00 37.19 4.00
2113 7375 2.374226 CGGCCGCAAAAATGTGCTG 61.374 57.895 14.67 0.00 42.62 4.41
2163 7425 2.892215 ACATGTTCATGTTCCATGTGCA 59.108 40.909 19.46 5.38 45.43 4.57
2316 7582 2.494059 ACTTGACATCTGAAACACCGG 58.506 47.619 0.00 0.00 0.00 5.28
2319 7585 0.517316 GACATCTGAAACACCGGCAC 59.483 55.000 0.00 0.00 0.00 5.01
2396 7663 9.248291 GTACATTCATTGTAATAAAGGGCATTG 57.752 33.333 0.00 0.00 42.37 2.82
2397 7664 6.762661 ACATTCATTGTAATAAAGGGCATTGC 59.237 34.615 0.00 0.00 36.57 3.56
2398 7665 6.543430 TTCATTGTAATAAAGGGCATTGCT 57.457 33.333 8.82 0.00 0.00 3.91
2399 7666 6.147864 TCATTGTAATAAAGGGCATTGCTC 57.852 37.500 8.82 4.06 0.00 4.26
2400 7667 5.655974 TCATTGTAATAAAGGGCATTGCTCA 59.344 36.000 11.86 0.00 0.00 4.26
2401 7668 5.991933 TTGTAATAAAGGGCATTGCTCAA 57.008 34.783 11.86 0.00 0.00 3.02
2402 7669 6.543430 TTGTAATAAAGGGCATTGCTCAAT 57.457 33.333 11.86 1.11 0.00 2.57
2403 7670 6.543430 TGTAATAAAGGGCATTGCTCAATT 57.457 33.333 11.86 9.67 0.00 2.32
2404 7671 6.572519 TGTAATAAAGGGCATTGCTCAATTC 58.427 36.000 11.86 3.49 0.00 2.17
2405 7672 5.945144 AATAAAGGGCATTGCTCAATTCT 57.055 34.783 11.86 0.00 0.00 2.40
2406 7673 5.945144 ATAAAGGGCATTGCTCAATTCTT 57.055 34.783 11.86 0.00 0.00 2.52
2407 7674 3.604875 AAGGGCATTGCTCAATTCTTG 57.395 42.857 11.86 0.00 0.00 3.02
2408 7675 1.829222 AGGGCATTGCTCAATTCTTGG 59.171 47.619 11.86 0.00 0.00 3.61
2409 7676 1.551883 GGGCATTGCTCAATTCTTGGT 59.448 47.619 8.82 0.00 0.00 3.67
2410 7677 2.760092 GGGCATTGCTCAATTCTTGGTA 59.240 45.455 8.82 0.00 0.00 3.25
2411 7678 3.195396 GGGCATTGCTCAATTCTTGGTAA 59.805 43.478 8.82 0.00 0.00 2.85
2412 7679 4.141869 GGGCATTGCTCAATTCTTGGTAAT 60.142 41.667 8.82 0.00 0.00 1.89
2413 7680 5.422145 GGCATTGCTCAATTCTTGGTAATT 58.578 37.500 8.82 0.00 0.00 1.40
2414 7681 5.521372 GGCATTGCTCAATTCTTGGTAATTC 59.479 40.000 8.82 0.00 0.00 2.17
2415 7682 5.521372 GCATTGCTCAATTCTTGGTAATTCC 59.479 40.000 0.16 0.00 0.00 3.01
2416 7683 5.659440 TTGCTCAATTCTTGGTAATTCCC 57.341 39.130 0.00 0.00 34.77 3.97
2417 7684 4.934356 TGCTCAATTCTTGGTAATTCCCT 58.066 39.130 0.00 0.00 34.77 4.20
2418 7685 5.332743 TGCTCAATTCTTGGTAATTCCCTT 58.667 37.500 0.00 0.00 34.77 3.95
2419 7686 5.418840 TGCTCAATTCTTGGTAATTCCCTTC 59.581 40.000 0.00 0.00 34.77 3.46
2420 7687 5.418840 GCTCAATTCTTGGTAATTCCCTTCA 59.581 40.000 0.00 0.00 34.77 3.02
2421 7688 6.097412 GCTCAATTCTTGGTAATTCCCTTCAT 59.903 38.462 0.00 0.00 34.77 2.57
2422 7689 7.364144 GCTCAATTCTTGGTAATTCCCTTCATT 60.364 37.037 0.00 0.00 34.77 2.57
2423 7690 8.434589 TCAATTCTTGGTAATTCCCTTCATTT 57.565 30.769 0.00 0.00 34.77 2.32
2424 7691 9.540538 TCAATTCTTGGTAATTCCCTTCATTTA 57.459 29.630 0.00 0.00 34.77 1.40
2427 7694 8.950007 TTCTTGGTAATTCCCTTCATTTAACT 57.050 30.769 0.00 0.00 34.77 2.24
2437 7704 7.817418 TCCCTTCATTTAACTATACATTGCC 57.183 36.000 0.00 0.00 0.00 4.52
2438 7705 7.350382 TCCCTTCATTTAACTATACATTGCCA 58.650 34.615 0.00 0.00 0.00 4.92
2439 7706 7.836685 TCCCTTCATTTAACTATACATTGCCAA 59.163 33.333 0.00 0.00 0.00 4.52
2440 7707 8.137437 CCCTTCATTTAACTATACATTGCCAAG 58.863 37.037 0.00 0.00 0.00 3.61
2441 7708 8.902806 CCTTCATTTAACTATACATTGCCAAGA 58.097 33.333 0.00 0.00 0.00 3.02
2442 7709 9.941664 CTTCATTTAACTATACATTGCCAAGAG 57.058 33.333 0.00 0.00 0.00 2.85
2443 7710 9.679661 TTCATTTAACTATACATTGCCAAGAGA 57.320 29.630 0.00 0.00 0.00 3.10
2444 7711 9.851686 TCATTTAACTATACATTGCCAAGAGAT 57.148 29.630 0.00 0.00 0.00 2.75
2447 7714 9.555727 TTTAACTATACATTGCCAAGAGATACC 57.444 33.333 0.00 0.00 0.00 2.73
2448 7715 6.115448 ACTATACATTGCCAAGAGATACCC 57.885 41.667 0.00 0.00 0.00 3.69
2449 7716 5.606749 ACTATACATTGCCAAGAGATACCCA 59.393 40.000 0.00 0.00 0.00 4.51
2450 7717 3.959495 ACATTGCCAAGAGATACCCAT 57.041 42.857 0.00 0.00 0.00 4.00
2451 7718 6.702449 ATACATTGCCAAGAGATACCCATA 57.298 37.500 0.00 0.00 0.00 2.74
2452 7719 4.718961 ACATTGCCAAGAGATACCCATAC 58.281 43.478 0.00 0.00 0.00 2.39
2453 7720 3.857157 TTGCCAAGAGATACCCATACC 57.143 47.619 0.00 0.00 0.00 2.73
2454 7721 2.054799 TGCCAAGAGATACCCATACCC 58.945 52.381 0.00 0.00 0.00 3.69
2455 7722 1.351350 GCCAAGAGATACCCATACCCC 59.649 57.143 0.00 0.00 0.00 4.95
2456 7723 1.985895 CCAAGAGATACCCATACCCCC 59.014 57.143 0.00 0.00 0.00 5.40
2457 7724 2.698967 CCAAGAGATACCCATACCCCCA 60.699 54.545 0.00 0.00 0.00 4.96
2458 7725 2.639839 CAAGAGATACCCATACCCCCAG 59.360 54.545 0.00 0.00 0.00 4.45
2459 7726 1.873732 AGAGATACCCATACCCCCAGT 59.126 52.381 0.00 0.00 0.00 4.00
2460 7727 3.076735 AGAGATACCCATACCCCCAGTA 58.923 50.000 0.00 0.00 34.76 2.74
2461 7728 3.077695 AGAGATACCCATACCCCCAGTAG 59.922 52.174 0.00 0.00 33.42 2.57
2476 7743 1.337387 CAGTAGCGACCTAACCTAGCC 59.663 57.143 0.00 0.00 0.00 3.93
2479 7746 3.126528 CGACCTAACCTAGCCCCG 58.873 66.667 0.00 0.00 0.00 5.73
2480 7747 1.755783 CGACCTAACCTAGCCCCGT 60.756 63.158 0.00 0.00 0.00 5.28
2481 7748 1.325476 CGACCTAACCTAGCCCCGTT 61.325 60.000 0.00 0.00 0.00 4.44
2518 7785 1.612442 CCTTCCTCCCCCTTCGTCA 60.612 63.158 0.00 0.00 0.00 4.35
2522 7789 3.771160 CTCCCCCTTCGTCACCCG 61.771 72.222 0.00 0.00 38.13 5.28
2557 7824 0.105964 AGGAGCTCCGATCTTAGCCA 60.106 55.000 26.95 0.00 39.64 4.75
2558 7825 0.972883 GGAGCTCCGATCTTAGCCAT 59.027 55.000 19.06 0.00 39.64 4.40
2567 7834 2.223829 CGATCTTAGCCATCGGTCACTT 60.224 50.000 0.00 0.00 39.62 3.16
2578 7845 1.609783 GGTCACTTCCCCTCCCATG 59.390 63.158 0.00 0.00 0.00 3.66
2587 7854 2.319762 CCCTCCCATGCCTTCCCTT 61.320 63.158 0.00 0.00 0.00 3.95
2723 7997 2.444706 CCCGGATCTGAGCCTCCA 60.445 66.667 10.61 0.00 0.00 3.86
2764 8038 2.125552 CGAGCAGCGGTGGATGAA 60.126 61.111 17.54 0.00 36.03 2.57
2770 8044 1.743772 GCAGCGGTGGATGAATAGTGT 60.744 52.381 17.54 0.00 0.00 3.55
2777 8051 2.945668 GTGGATGAATAGTGTTGGAGCC 59.054 50.000 0.00 0.00 0.00 4.70
2880 8155 1.152525 GGCCCTCCGGTCAGATCTA 60.153 63.158 0.00 0.00 32.15 1.98
2929 8204 1.315257 GGCGGTGCAGATTGATGGTT 61.315 55.000 0.00 0.00 0.00 3.67
2956 8231 2.670635 GCACGATGCGAGATGAAGT 58.329 52.632 0.00 0.00 31.71 3.01
2958 8233 1.005557 GCACGATGCGAGATGAAGTTC 60.006 52.381 0.00 0.00 31.71 3.01
3051 8327 2.074576 GTCGTTACCTTCTTGAAGGCC 58.925 52.381 24.58 14.07 43.80 5.19
3070 8347 0.951040 CTCGCCGTGAAAAAGCTCCT 60.951 55.000 0.00 0.00 0.00 3.69
3089 8367 2.588620 CTGACCTCTATCCGCTACCTT 58.411 52.381 0.00 0.00 0.00 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 5199 0.179145 CGCGTCGGTACCTCATTCTT 60.179 55.000 10.90 0.00 0.00 2.52
47 5208 2.713894 GACAGCAACGCGTCGGTAC 61.714 63.158 14.44 0.48 0.00 3.34
58 5219 1.476845 TAGGGGAGCAACGACAGCAA 61.477 55.000 0.00 0.00 0.00 3.91
86 5247 5.354234 CGGTTATCATCAACAAGGTTAAGCT 59.646 40.000 0.12 0.12 0.00 3.74
91 5252 6.642707 TTTTCGGTTATCATCAACAAGGTT 57.357 33.333 0.00 0.00 0.00 3.50
107 5269 1.070175 CGTGCACGAAGATTTTTCGGT 60.070 47.619 34.93 0.00 45.34 4.69
177 5339 9.950496 GGTGTCAGGTATTTCAGATATATTCAT 57.050 33.333 0.00 0.00 0.00 2.57
184 5346 9.778741 GATATTTGGTGTCAGGTATTTCAGATA 57.221 33.333 0.00 0.00 0.00 1.98
211 5373 0.670546 AGGGTTTCGCGTCATGTGAG 60.671 55.000 5.77 0.00 38.57 3.51
222 5384 1.609841 GGTGGTGAGGTTAGGGTTTCG 60.610 57.143 0.00 0.00 0.00 3.46
252 5415 2.037251 GCTCCGGCATAGATTTCTACCA 59.963 50.000 0.00 0.00 38.54 3.25
281 5444 5.007430 TCGAGTTCGTCCATCTAGACATAAC 59.993 44.000 0.00 0.00 40.80 1.89
282 5445 5.121105 TCGAGTTCGTCCATCTAGACATAA 58.879 41.667 0.00 0.00 40.80 1.90
362 5525 1.540435 TAGTCCTCACATGTGCGGCA 61.540 55.000 26.79 14.65 35.52 5.69
390 5553 4.261581 CGCTTCCGTTAGTAGTTTAGTTCG 59.738 45.833 0.00 0.00 0.00 3.95
391 5554 4.560427 CCGCTTCCGTTAGTAGTTTAGTTC 59.440 45.833 0.00 0.00 0.00 3.01
407 5570 1.403687 ATCTAGGTGCCTCCGCTTCC 61.404 60.000 0.00 0.00 41.99 3.46
422 5586 1.411216 GGTGACGAGGAGGGGAATCTA 60.411 57.143 0.00 0.00 0.00 1.98
461 5628 1.521681 GTGAATTCGCCTCCCCTCG 60.522 63.158 7.83 0.00 0.00 4.63
500 5668 1.838077 GGCTAGGGCAACTCTTTCCTA 59.162 52.381 0.00 0.00 40.87 2.94
504 5672 1.377333 GCGGCTAGGGCAACTCTTT 60.377 57.895 0.00 0.00 40.87 2.52
523 5692 2.116342 CCCTTCCCTATCCCTATCCCTT 59.884 54.545 0.00 0.00 0.00 3.95
524 5693 1.731062 CCCTTCCCTATCCCTATCCCT 59.269 57.143 0.00 0.00 0.00 4.20
525 5694 1.728701 TCCCTTCCCTATCCCTATCCC 59.271 57.143 0.00 0.00 0.00 3.85
526 5695 3.579742 TTCCCTTCCCTATCCCTATCC 57.420 52.381 0.00 0.00 0.00 2.59
527 5696 4.764491 TCTTTCCCTTCCCTATCCCTATC 58.236 47.826 0.00 0.00 0.00 2.08
528 5697 4.427406 TCTCTTTCCCTTCCCTATCCCTAT 59.573 45.833 0.00 0.00 0.00 2.57
563 5732 4.080582 TCCTCTCCAGTGACTGTTCAAAAA 60.081 41.667 12.15 0.00 31.90 1.94
564 5733 3.454447 TCCTCTCCAGTGACTGTTCAAAA 59.546 43.478 12.15 0.00 31.90 2.44
565 5734 3.038280 TCCTCTCCAGTGACTGTTCAAA 58.962 45.455 12.15 0.00 31.90 2.69
566 5735 2.630098 CTCCTCTCCAGTGACTGTTCAA 59.370 50.000 12.15 0.00 31.90 2.69
567 5736 2.158460 TCTCCTCTCCAGTGACTGTTCA 60.158 50.000 12.15 0.00 0.00 3.18
568 5737 2.491693 CTCTCCTCTCCAGTGACTGTTC 59.508 54.545 12.15 0.00 0.00 3.18
569 5738 2.109128 TCTCTCCTCTCCAGTGACTGTT 59.891 50.000 12.15 0.00 0.00 3.16
570 5739 1.707989 TCTCTCCTCTCCAGTGACTGT 59.292 52.381 12.15 0.00 0.00 3.55
571 5740 2.505650 TCTCTCCTCTCCAGTGACTG 57.494 55.000 5.42 5.42 0.00 3.51
572 5741 3.627237 GGATTCTCTCCTCTCCAGTGACT 60.627 52.174 0.00 0.00 41.29 3.41
573 5742 2.693074 GGATTCTCTCCTCTCCAGTGAC 59.307 54.545 0.00 0.00 41.29 3.67
574 5743 2.358721 GGGATTCTCTCCTCTCCAGTGA 60.359 54.545 0.00 0.00 44.28 3.41
575 5744 2.038659 GGGATTCTCTCCTCTCCAGTG 58.961 57.143 0.00 0.00 44.28 3.66
576 5745 1.062505 GGGGATTCTCTCCTCTCCAGT 60.063 57.143 0.00 0.00 41.91 4.00
577 5746 1.062581 TGGGGATTCTCTCCTCTCCAG 60.063 57.143 0.00 0.00 45.90 3.86
578 5747 1.018840 TGGGGATTCTCTCCTCTCCA 58.981 55.000 0.00 0.00 45.90 3.86
579 5748 1.419381 GTGGGGATTCTCTCCTCTCC 58.581 60.000 0.00 0.00 45.90 3.71
580 5749 1.062505 AGGTGGGGATTCTCTCCTCTC 60.063 57.143 0.00 0.00 45.90 3.20
581 5750 1.022903 AGGTGGGGATTCTCTCCTCT 58.977 55.000 0.00 0.00 45.90 3.69
582 5751 1.127343 CAGGTGGGGATTCTCTCCTC 58.873 60.000 0.00 0.00 45.92 3.71
583 5752 0.719015 TCAGGTGGGGATTCTCTCCT 59.281 55.000 0.00 0.00 44.28 3.69
584 5753 1.584724 TTCAGGTGGGGATTCTCTCC 58.415 55.000 0.00 0.00 44.11 3.71
585 5754 6.882768 ATATATTCAGGTGGGGATTCTCTC 57.117 41.667 0.00 0.00 0.00 3.20
586 5755 6.523150 GCAATATATTCAGGTGGGGATTCTCT 60.523 42.308 0.00 0.00 0.00 3.10
587 5756 5.649831 GCAATATATTCAGGTGGGGATTCTC 59.350 44.000 0.00 0.00 0.00 2.87
588 5757 5.314306 AGCAATATATTCAGGTGGGGATTCT 59.686 40.000 0.00 0.00 0.00 2.40
589 5758 5.574188 AGCAATATATTCAGGTGGGGATTC 58.426 41.667 0.00 0.00 0.00 2.52
590 5759 5.074929 TGAGCAATATATTCAGGTGGGGATT 59.925 40.000 0.00 0.00 0.00 3.01
591 5760 4.603171 TGAGCAATATATTCAGGTGGGGAT 59.397 41.667 0.00 0.00 0.00 3.85
592 5761 3.980022 TGAGCAATATATTCAGGTGGGGA 59.020 43.478 0.00 0.00 0.00 4.81
593 5762 4.371624 TGAGCAATATATTCAGGTGGGG 57.628 45.455 0.00 0.00 0.00 4.96
594 5763 5.278660 GCTTTGAGCAATATATTCAGGTGGG 60.279 44.000 0.00 0.00 41.89 4.61
595 5764 5.533903 AGCTTTGAGCAATATATTCAGGTGG 59.466 40.000 2.47 0.00 45.56 4.61
596 5765 6.436261 CAGCTTTGAGCAATATATTCAGGTG 58.564 40.000 2.47 0.00 45.56 4.00
597 5766 5.009410 GCAGCTTTGAGCAATATATTCAGGT 59.991 40.000 2.47 0.00 45.56 4.00
598 5767 5.458891 GCAGCTTTGAGCAATATATTCAGG 58.541 41.667 2.47 0.00 45.56 3.86
599 5768 5.009310 TGGCAGCTTTGAGCAATATATTCAG 59.991 40.000 2.47 0.00 45.56 3.02
600 5769 4.888823 TGGCAGCTTTGAGCAATATATTCA 59.111 37.500 2.47 0.00 45.56 2.57
601 5770 5.443185 TGGCAGCTTTGAGCAATATATTC 57.557 39.130 2.47 0.00 45.56 1.75
602 5771 5.857471 TTGGCAGCTTTGAGCAATATATT 57.143 34.783 2.47 0.00 45.56 1.28
603 5772 5.738208 GCTTTGGCAGCTTTGAGCAATATAT 60.738 40.000 2.47 0.00 45.56 0.86
604 5773 4.440525 GCTTTGGCAGCTTTGAGCAATATA 60.441 41.667 2.47 0.00 45.56 0.86
605 5774 3.677976 GCTTTGGCAGCTTTGAGCAATAT 60.678 43.478 2.47 0.00 45.56 1.28
606 5775 2.353011 GCTTTGGCAGCTTTGAGCAATA 60.353 45.455 2.47 0.00 45.56 1.90
607 5776 1.607251 GCTTTGGCAGCTTTGAGCAAT 60.607 47.619 2.47 0.00 45.56 3.56
608 5777 0.249573 GCTTTGGCAGCTTTGAGCAA 60.250 50.000 2.47 0.00 45.56 3.91
609 5778 1.364901 GCTTTGGCAGCTTTGAGCA 59.635 52.632 2.47 0.00 45.56 4.26
610 5779 4.256813 GCTTTGGCAGCTTTGAGC 57.743 55.556 0.00 0.00 46.27 4.26
618 5787 3.698040 AGAACTAATCATGGCTTTGGCAG 59.302 43.478 0.00 0.00 42.43 4.85
619 5788 3.696051 GAGAACTAATCATGGCTTTGGCA 59.304 43.478 0.00 0.00 43.52 4.92
620 5789 3.696051 TGAGAACTAATCATGGCTTTGGC 59.304 43.478 0.00 0.00 37.82 4.52
621 5790 5.416952 ACTTGAGAACTAATCATGGCTTTGG 59.583 40.000 0.00 0.00 0.00 3.28
622 5791 6.506500 ACTTGAGAACTAATCATGGCTTTG 57.493 37.500 0.00 0.00 0.00 2.77
623 5792 7.014615 ACAAACTTGAGAACTAATCATGGCTTT 59.985 33.333 0.00 0.00 0.00 3.51
624 5793 6.491403 ACAAACTTGAGAACTAATCATGGCTT 59.509 34.615 0.00 0.00 0.00 4.35
625 5794 6.006449 ACAAACTTGAGAACTAATCATGGCT 58.994 36.000 0.00 0.00 0.00 4.75
626 5795 6.088824 CACAAACTTGAGAACTAATCATGGC 58.911 40.000 0.00 0.00 0.00 4.40
627 5796 6.088824 GCACAAACTTGAGAACTAATCATGG 58.911 40.000 0.00 0.00 0.00 3.66
628 5797 6.580041 GTGCACAAACTTGAGAACTAATCATG 59.420 38.462 13.17 0.00 0.00 3.07
629 5798 6.488006 AGTGCACAAACTTGAGAACTAATCAT 59.512 34.615 21.04 0.00 36.12 2.45
630 5799 5.822519 AGTGCACAAACTTGAGAACTAATCA 59.177 36.000 21.04 0.00 36.12 2.57
635 5804 2.098117 GCAGTGCACAAACTTGAGAACT 59.902 45.455 21.04 0.00 38.04 3.01
644 5813 1.000060 ACATCATGGCAGTGCACAAAC 60.000 47.619 21.04 8.66 0.00 2.93
697 5866 1.477700 CGGGGATGCATGACATGTTTT 59.522 47.619 16.62 2.33 39.84 2.43
711 5891 2.990066 TGTTTTGTTTTTGCGGGGAT 57.010 40.000 0.00 0.00 0.00 3.85
758 5939 1.281867 AGGGCTACATTGCACAGCTTA 59.718 47.619 8.25 0.00 39.15 3.09
759 5940 0.038744 AGGGCTACATTGCACAGCTT 59.961 50.000 8.25 0.00 39.15 3.74
769 5951 6.912951 ATTTATAGTACACGAGGGCTACAT 57.087 37.500 0.00 0.00 0.00 2.29
820 6004 9.274206 CCTCCTAATAATTAGTAAAACTCCAGC 57.726 37.037 0.00 0.00 0.00 4.85
866 6050 2.736400 GCCAGCTTTGGATCCGATTTTG 60.736 50.000 7.39 3.95 0.00 2.44
882 6066 1.660560 ATGTTGATTCGGCTGCCAGC 61.661 55.000 20.29 8.55 41.46 4.85
951 6135 4.232091 TCCTGTAATTGGGGATAGGAGAC 58.768 47.826 0.00 0.00 31.19 3.36
957 6141 2.158726 GCCGTTCCTGTAATTGGGGATA 60.159 50.000 0.00 0.00 0.00 2.59
960 6144 1.373590 CGCCGTTCCTGTAATTGGGG 61.374 60.000 0.00 0.00 0.00 4.96
999 6183 1.487482 GCGATGTTCGTGCTAGCATA 58.513 50.000 22.51 9.78 42.81 3.14
1027 6211 2.686816 CGTCCGTGGGGAAACATGC 61.687 63.158 0.00 0.00 46.08 4.06
1388 6620 1.227089 CTCCTGTCCTCGCCGAATG 60.227 63.158 0.00 0.00 0.00 2.67
1689 6951 1.285950 GGGCAGAAACGGCAAAGAC 59.714 57.895 0.00 0.00 0.00 3.01
1707 6969 2.126618 TAGTCGTTGTGCCTCGCG 60.127 61.111 0.00 0.00 0.00 5.87
2013 7275 0.321653 AGCCCACACCGTTCATCTTC 60.322 55.000 0.00 0.00 0.00 2.87
2052 7314 4.213270 TCCAATGTCTTGACGTAAGCAAAG 59.787 41.667 0.00 0.00 45.62 2.77
2113 7375 7.064016 TGCTTGTCAAAAACTTCAACAAATACC 59.936 33.333 0.00 0.00 30.16 2.73
2176 7438 9.787532 CCATGGGCTTATTTATTTATTATGACG 57.212 33.333 2.85 0.00 0.00 4.35
2377 7643 5.904941 TGAGCAATGCCCTTTATTACAATG 58.095 37.500 0.00 0.00 0.00 2.82
2401 7668 9.547279 AGTTAAATGAAGGGAATTACCAAGAAT 57.453 29.630 10.06 0.00 41.20 2.40
2402 7669 8.950007 AGTTAAATGAAGGGAATTACCAAGAA 57.050 30.769 10.06 0.00 41.20 2.52
2411 7678 8.860088 GGCAATGTATAGTTAAATGAAGGGAAT 58.140 33.333 0.00 0.00 0.00 3.01
2412 7679 7.836685 TGGCAATGTATAGTTAAATGAAGGGAA 59.163 33.333 0.00 0.00 0.00 3.97
2413 7680 7.350382 TGGCAATGTATAGTTAAATGAAGGGA 58.650 34.615 0.00 0.00 0.00 4.20
2414 7681 7.581213 TGGCAATGTATAGTTAAATGAAGGG 57.419 36.000 0.00 0.00 0.00 3.95
2415 7682 8.902806 TCTTGGCAATGTATAGTTAAATGAAGG 58.097 33.333 0.00 0.00 0.00 3.46
2416 7683 9.941664 CTCTTGGCAATGTATAGTTAAATGAAG 57.058 33.333 0.00 0.00 0.00 3.02
2417 7684 9.679661 TCTCTTGGCAATGTATAGTTAAATGAA 57.320 29.630 0.00 0.00 0.00 2.57
2418 7685 9.851686 ATCTCTTGGCAATGTATAGTTAAATGA 57.148 29.630 0.00 0.00 0.00 2.57
2421 7688 9.555727 GGTATCTCTTGGCAATGTATAGTTAAA 57.444 33.333 0.00 0.00 0.00 1.52
2422 7689 8.154856 GGGTATCTCTTGGCAATGTATAGTTAA 58.845 37.037 0.00 0.00 0.00 2.01
2423 7690 7.291416 TGGGTATCTCTTGGCAATGTATAGTTA 59.709 37.037 0.00 0.00 0.00 2.24
2424 7691 6.101150 TGGGTATCTCTTGGCAATGTATAGTT 59.899 38.462 0.00 0.00 0.00 2.24
2425 7692 5.606749 TGGGTATCTCTTGGCAATGTATAGT 59.393 40.000 0.00 0.00 0.00 2.12
2426 7693 6.114187 TGGGTATCTCTTGGCAATGTATAG 57.886 41.667 0.00 0.00 0.00 1.31
2427 7694 6.702449 ATGGGTATCTCTTGGCAATGTATA 57.298 37.500 0.00 0.00 0.00 1.47
2428 7695 5.589367 ATGGGTATCTCTTGGCAATGTAT 57.411 39.130 0.00 0.00 0.00 2.29
2429 7696 5.221843 GGTATGGGTATCTCTTGGCAATGTA 60.222 44.000 0.00 0.00 0.00 2.29
2430 7697 3.959495 ATGGGTATCTCTTGGCAATGT 57.041 42.857 0.00 0.00 0.00 2.71
2431 7698 4.074970 GGTATGGGTATCTCTTGGCAATG 58.925 47.826 0.00 0.00 0.00 2.82
2432 7699 3.074538 GGGTATGGGTATCTCTTGGCAAT 59.925 47.826 0.00 0.00 0.00 3.56
2433 7700 2.441750 GGGTATGGGTATCTCTTGGCAA 59.558 50.000 0.00 0.00 0.00 4.52
2434 7701 2.054799 GGGTATGGGTATCTCTTGGCA 58.945 52.381 0.00 0.00 0.00 4.92
2435 7702 1.351350 GGGGTATGGGTATCTCTTGGC 59.649 57.143 0.00 0.00 0.00 4.52
2436 7703 1.985895 GGGGGTATGGGTATCTCTTGG 59.014 57.143 0.00 0.00 0.00 3.61
2437 7704 2.639839 CTGGGGGTATGGGTATCTCTTG 59.360 54.545 0.00 0.00 0.00 3.02
2438 7705 2.252945 ACTGGGGGTATGGGTATCTCTT 59.747 50.000 0.00 0.00 0.00 2.85
2439 7706 1.873732 ACTGGGGGTATGGGTATCTCT 59.126 52.381 0.00 0.00 0.00 3.10
2440 7707 2.417719 ACTGGGGGTATGGGTATCTC 57.582 55.000 0.00 0.00 0.00 2.75
2441 7708 2.494816 GCTACTGGGGGTATGGGTATCT 60.495 54.545 0.00 0.00 0.00 1.98
2442 7709 1.907255 GCTACTGGGGGTATGGGTATC 59.093 57.143 0.00 0.00 0.00 2.24
2443 7710 1.830071 CGCTACTGGGGGTATGGGTAT 60.830 57.143 0.00 0.00 0.00 2.73
2444 7711 0.470456 CGCTACTGGGGGTATGGGTA 60.470 60.000 0.00 0.00 0.00 3.69
2445 7712 1.764854 CGCTACTGGGGGTATGGGT 60.765 63.158 0.00 0.00 0.00 4.51
2446 7713 1.458777 TCGCTACTGGGGGTATGGG 60.459 63.158 0.00 0.00 0.00 4.00
2447 7714 1.746517 GTCGCTACTGGGGGTATGG 59.253 63.158 0.00 0.00 0.00 2.74
2448 7715 0.759436 AGGTCGCTACTGGGGGTATG 60.759 60.000 0.00 0.00 0.00 2.39
2449 7716 0.855598 TAGGTCGCTACTGGGGGTAT 59.144 55.000 0.00 0.00 0.00 2.73
2450 7717 0.630673 TTAGGTCGCTACTGGGGGTA 59.369 55.000 0.00 0.00 0.00 3.69
2451 7718 0.974525 GTTAGGTCGCTACTGGGGGT 60.975 60.000 0.00 0.00 0.00 4.95
2452 7719 1.683418 GGTTAGGTCGCTACTGGGGG 61.683 65.000 0.00 0.00 0.00 5.40
2453 7720 0.686769 AGGTTAGGTCGCTACTGGGG 60.687 60.000 0.00 0.00 0.00 4.96
2454 7721 1.955080 CTAGGTTAGGTCGCTACTGGG 59.045 57.143 0.00 0.00 0.00 4.45
2455 7722 1.337387 GCTAGGTTAGGTCGCTACTGG 59.663 57.143 0.00 0.00 0.00 4.00
2456 7723 1.337387 GGCTAGGTTAGGTCGCTACTG 59.663 57.143 0.00 0.00 0.00 2.74
2457 7724 1.689984 GGCTAGGTTAGGTCGCTACT 58.310 55.000 0.00 0.00 0.00 2.57
2458 7725 0.672889 GGGCTAGGTTAGGTCGCTAC 59.327 60.000 0.00 0.00 0.00 3.58
2459 7726 0.468771 GGGGCTAGGTTAGGTCGCTA 60.469 60.000 0.00 0.00 0.00 4.26
2460 7727 1.761271 GGGGCTAGGTTAGGTCGCT 60.761 63.158 0.00 0.00 0.00 4.93
2461 7728 2.820261 GGGGCTAGGTTAGGTCGC 59.180 66.667 0.00 0.00 0.00 5.19
2479 7746 2.354188 GAAACAACGGGCGGCAAC 60.354 61.111 12.47 0.00 0.00 4.17
2480 7747 3.597728 GGAAACAACGGGCGGCAA 61.598 61.111 12.47 0.00 0.00 4.52
2481 7748 4.572571 AGGAAACAACGGGCGGCA 62.573 61.111 12.47 0.00 0.00 5.69
2490 7757 1.073098 GGGAGGAAGGGAGGAAACAA 58.927 55.000 0.00 0.00 0.00 2.83
2541 7808 0.600557 CGATGGCTAAGATCGGAGCT 59.399 55.000 17.89 0.00 39.23 4.09
2547 7814 3.385577 GAAGTGACCGATGGCTAAGATC 58.614 50.000 0.00 0.00 0.00 2.75
2557 7824 1.689582 GGGAGGGGAAGTGACCGAT 60.690 63.158 0.00 0.00 0.00 4.18
2558 7825 2.284405 GGGAGGGGAAGTGACCGA 60.284 66.667 0.00 0.00 0.00 4.69
2567 7834 2.696125 GGAAGGCATGGGAGGGGA 60.696 66.667 0.00 0.00 0.00 4.81
2602 7869 2.343426 GGCTTAGCTTGGCGGCTTT 61.343 57.895 11.43 0.00 42.97 3.51
2630 7897 4.720902 TCCTCCGCCACCGTCGTA 62.721 66.667 0.00 0.00 0.00 3.43
2752 8026 2.632377 CAACACTATTCATCCACCGCT 58.368 47.619 0.00 0.00 0.00 5.52
2764 8038 1.450312 GCAGCGGCTCCAACACTAT 60.450 57.895 0.00 0.00 36.96 2.12
2880 8155 1.684248 GCAATCCACTCTGGCCAGATT 60.684 52.381 35.11 27.24 37.47 2.40
2915 8190 2.583024 TGGACAACCATCAATCTGCA 57.417 45.000 0.00 0.00 41.77 4.41
2929 8204 3.498834 GCATCGTGCGCATGGACA 61.499 61.111 28.29 10.89 35.97 4.02
2956 8231 3.193757 CGGATCCACTCGACGGAA 58.806 61.111 13.41 0.00 35.77 4.30
2958 8233 3.900892 CCCGGATCCACTCGACGG 61.901 72.222 13.41 4.91 43.89 4.79
3051 8327 0.951040 AGGAGCTTTTTCACGGCGAG 60.951 55.000 16.62 5.72 0.00 5.03
3070 8347 2.584236 GAAGGTAGCGGATAGAGGTCA 58.416 52.381 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.