Multiple sequence alignment - TraesCS5A01G309200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G309200 chr5A 100.000 3449 0 0 1 3449 521695495 521698943 0.000000e+00 6370.0
1 TraesCS5A01G309200 chr5A 76.983 1412 278 36 1003 2388 521358248 521359638 0.000000e+00 763.0
2 TraesCS5A01G309200 chr5A 94.681 282 14 1 260 541 540032003 540031723 1.470000e-118 436.0
3 TraesCS5A01G309200 chr5B 91.256 1967 90 22 749 2658 491952091 491954032 0.000000e+00 2604.0
4 TraesCS5A01G309200 chr5B 89.583 336 11 9 2860 3194 491955414 491955726 4.140000e-109 405.0
5 TraesCS5A01G309200 chr5B 88.690 168 10 4 30 192 491951667 491951830 2.720000e-46 196.0
6 TraesCS5A01G309200 chr5B 78.988 257 42 10 3192 3446 491975473 491975719 7.660000e-37 165.0
7 TraesCS5A01G309200 chr5B 87.755 147 6 4 2727 2867 491954069 491954209 9.910000e-36 161.0
8 TraesCS5A01G309200 chr5B 89.552 67 6 1 3234 3299 491972959 491972893 2.210000e-12 84.2
9 TraesCS5A01G309200 chr5D 90.662 1949 106 26 749 2658 410200487 410202398 0.000000e+00 2521.0
10 TraesCS5A01G309200 chr5D 78.121 1458 264 38 1000 2433 545207499 545208925 0.000000e+00 874.0
11 TraesCS5A01G309200 chr5D 76.397 1432 290 37 1003 2410 410075578 410076985 0.000000e+00 728.0
12 TraesCS5A01G309200 chr5D 88.836 627 23 16 2727 3347 410202435 410203020 0.000000e+00 726.0
13 TraesCS5A01G309200 chr5D 87.407 135 10 1 40 174 410192583 410192710 7.710000e-32 148.0
14 TraesCS5A01G309200 chr4B 95.018 281 13 1 263 543 203203641 203203362 1.140000e-119 440.0
15 TraesCS5A01G309200 chr4B 94.662 281 15 0 264 544 357999251 357999531 1.470000e-118 436.0
16 TraesCS5A01G309200 chr4A 95.000 280 14 0 265 544 732970083 732970362 1.140000e-119 440.0
17 TraesCS5A01G309200 chr3B 94.425 287 14 2 257 543 248583951 248584235 1.140000e-119 440.0
18 TraesCS5A01G309200 chr2B 94.681 282 15 0 260 541 733853290 733853571 4.090000e-119 438.0
19 TraesCS5A01G309200 chr2B 94.662 281 15 0 267 547 453814034 453813754 1.470000e-118 436.0
20 TraesCS5A01G309200 chr7B 93.471 291 17 2 265 554 38683995 38684284 6.840000e-117 431.0
21 TraesCS5A01G309200 chr1A 92.905 296 17 4 263 556 441762344 441762637 8.850000e-116 427.0
22 TraesCS5A01G309200 chr1A 84.229 279 38 5 1894 2168 9538675 9538399 2.040000e-67 267.0
23 TraesCS5A01G309200 chr7A 83.448 290 37 8 1894 2175 635102452 635102738 3.410000e-65 259.0
24 TraesCS5A01G309200 chr2D 83.471 242 24 4 1892 2120 39165056 39164818 9.700000e-51 211.0
25 TraesCS5A01G309200 chr4D 82.470 251 28 9 1592 1832 84468554 84468798 4.510000e-49 206.0
26 TraesCS5A01G309200 chr4D 87.736 106 13 0 1892 1997 84468997 84469102 1.300000e-24 124.0
27 TraesCS5A01G309200 chr4D 91.935 62 4 1 3389 3449 322281572 322281633 6.130000e-13 86.1
28 TraesCS5A01G309200 chr6D 86.792 106 14 0 1892 1997 409497632 409497737 6.050000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G309200 chr5A 521695495 521698943 3448 False 6370.0 6370 100.000 1 3449 1 chr5A.!!$F2 3448
1 TraesCS5A01G309200 chr5A 521358248 521359638 1390 False 763.0 763 76.983 1003 2388 1 chr5A.!!$F1 1385
2 TraesCS5A01G309200 chr5B 491951667 491955726 4059 False 841.5 2604 89.321 30 3194 4 chr5B.!!$F2 3164
3 TraesCS5A01G309200 chr5D 410200487 410203020 2533 False 1623.5 2521 89.749 749 3347 2 chr5D.!!$F4 2598
4 TraesCS5A01G309200 chr5D 545207499 545208925 1426 False 874.0 874 78.121 1000 2433 1 chr5D.!!$F3 1433
5 TraesCS5A01G309200 chr5D 410075578 410076985 1407 False 728.0 728 76.397 1003 2410 1 chr5D.!!$F1 1407

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
274 299 0.175073 CCTACGTGGTAAGGCTGGTC 59.825 60.0 0.0 0.0 0.0 4.02 F
560 585 0.179094 AAGCAGTGACCACGAAACGA 60.179 50.0 0.0 0.0 36.2 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2200 2301 0.107081 AACCGGTGGAACGTCATCAA 59.893 50.0 8.52 0.0 38.12 2.57 R
2452 2559 0.175760 GCATGCTCTTGGGTCTCGTA 59.824 55.0 11.37 0.0 0.00 3.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.737249 CAACAACGTTACACCAAGCG 58.263 50.000 0.00 0.00 0.00 4.68
20 21 1.062880 CAACAACGTTACACCAAGCGT 59.937 47.619 0.00 0.00 39.37 5.07
21 22 0.932399 ACAACGTTACACCAAGCGTC 59.068 50.000 0.00 0.00 36.51 5.19
22 23 0.931702 CAACGTTACACCAAGCGTCA 59.068 50.000 0.00 0.00 36.51 4.35
23 24 0.932399 AACGTTACACCAAGCGTCAC 59.068 50.000 0.00 0.00 36.51 3.67
24 25 0.877213 ACGTTACACCAAGCGTCACC 60.877 55.000 0.00 0.00 31.54 4.02
25 26 1.857364 GTTACACCAAGCGTCACCG 59.143 57.895 0.00 0.00 37.07 4.94
26 27 0.598158 GTTACACCAAGCGTCACCGA 60.598 55.000 0.00 0.00 35.63 4.69
27 28 0.319211 TTACACCAAGCGTCACCGAG 60.319 55.000 0.00 0.00 35.63 4.63
28 29 1.174078 TACACCAAGCGTCACCGAGA 61.174 55.000 0.00 0.00 35.63 4.04
40 41 0.460987 CACCGAGACAGGATTGCCTC 60.461 60.000 0.00 0.00 44.80 4.70
43 44 1.579698 CGAGACAGGATTGCCTCATG 58.420 55.000 0.00 0.00 44.80 3.07
44 45 1.307097 GAGACAGGATTGCCTCATGC 58.693 55.000 0.00 0.00 44.80 4.06
45 46 0.463295 AGACAGGATTGCCTCATGCG 60.463 55.000 0.00 0.00 44.80 4.73
105 106 1.200716 TGGTCACCGACACGAGAATAC 59.799 52.381 0.00 0.00 33.68 1.89
110 111 2.099263 CACCGACACGAGAATACCTCAT 59.901 50.000 0.00 0.00 42.06 2.90
160 165 7.864686 TGTATAGTACGTGCGTCACTTATAAT 58.135 34.615 0.00 4.61 31.34 1.28
201 206 4.324991 GGGACCGGCGTCAGGTTT 62.325 66.667 6.01 0.00 43.01 3.27
224 249 2.710096 TGGCTCTGCTACATTTACCC 57.290 50.000 0.00 0.00 0.00 3.69
227 252 2.485657 GGCTCTGCTACATTTACCCCTC 60.486 54.545 0.00 0.00 0.00 4.30
232 257 6.569127 TCTGCTACATTTACCCCTCAATTA 57.431 37.500 0.00 0.00 0.00 1.40
237 262 6.183360 GCTACATTTACCCCTCAATTAACACC 60.183 42.308 0.00 0.00 0.00 4.16
248 273 1.636988 ATTAACACCTCTGCGCGTAC 58.363 50.000 8.43 0.00 0.00 3.67
249 274 0.730155 TTAACACCTCTGCGCGTACG 60.730 55.000 11.84 11.84 44.07 3.67
250 275 2.531927 TAACACCTCTGCGCGTACGG 62.532 60.000 18.39 7.13 40.57 4.02
273 298 2.283824 CCTACGTGGTAAGGCTGGT 58.716 57.895 0.00 0.00 0.00 4.00
274 299 0.175073 CCTACGTGGTAAGGCTGGTC 59.825 60.000 0.00 0.00 0.00 4.02
275 300 0.892755 CTACGTGGTAAGGCTGGTCA 59.107 55.000 0.00 0.00 0.00 4.02
276 301 0.604578 TACGTGGTAAGGCTGGTCAC 59.395 55.000 0.00 0.00 0.00 3.67
277 302 1.369692 CGTGGTAAGGCTGGTCACA 59.630 57.895 12.55 0.00 0.00 3.58
286 311 4.087892 CTGGTCACAGCGGGGAGG 62.088 72.222 0.00 0.00 38.01 4.30
287 312 4.631740 TGGTCACAGCGGGGAGGA 62.632 66.667 0.00 0.00 0.00 3.71
288 313 3.319198 GGTCACAGCGGGGAGGAA 61.319 66.667 0.00 0.00 0.00 3.36
289 314 2.670148 GGTCACAGCGGGGAGGAAT 61.670 63.158 0.00 0.00 0.00 3.01
290 315 1.299976 GTCACAGCGGGGAGGAATT 59.700 57.895 0.00 0.00 0.00 2.17
291 316 0.322546 GTCACAGCGGGGAGGAATTT 60.323 55.000 0.00 0.00 0.00 1.82
292 317 1.065709 GTCACAGCGGGGAGGAATTTA 60.066 52.381 0.00 0.00 0.00 1.40
293 318 1.209504 TCACAGCGGGGAGGAATTTAG 59.790 52.381 0.00 0.00 0.00 1.85
294 319 1.209504 CACAGCGGGGAGGAATTTAGA 59.790 52.381 0.00 0.00 0.00 2.10
295 320 1.913419 ACAGCGGGGAGGAATTTAGAA 59.087 47.619 0.00 0.00 0.00 2.10
296 321 2.092914 ACAGCGGGGAGGAATTTAGAAG 60.093 50.000 0.00 0.00 0.00 2.85
297 322 2.092914 CAGCGGGGAGGAATTTAGAAGT 60.093 50.000 0.00 0.00 0.00 3.01
298 323 3.134081 CAGCGGGGAGGAATTTAGAAGTA 59.866 47.826 0.00 0.00 0.00 2.24
299 324 3.778629 AGCGGGGAGGAATTTAGAAGTAA 59.221 43.478 0.00 0.00 0.00 2.24
300 325 3.875727 GCGGGGAGGAATTTAGAAGTAAC 59.124 47.826 0.00 0.00 0.00 2.50
301 326 4.624604 GCGGGGAGGAATTTAGAAGTAACA 60.625 45.833 0.00 0.00 0.00 2.41
302 327 5.681639 CGGGGAGGAATTTAGAAGTAACAT 58.318 41.667 0.00 0.00 0.00 2.71
303 328 5.758784 CGGGGAGGAATTTAGAAGTAACATC 59.241 44.000 0.00 0.00 0.00 3.06
304 329 6.631766 CGGGGAGGAATTTAGAAGTAACATCA 60.632 42.308 0.00 0.00 0.00 3.07
305 330 6.542735 GGGGAGGAATTTAGAAGTAACATCAC 59.457 42.308 0.00 0.00 0.00 3.06
306 331 7.110155 GGGAGGAATTTAGAAGTAACATCACA 58.890 38.462 0.00 0.00 0.00 3.58
307 332 7.065923 GGGAGGAATTTAGAAGTAACATCACAC 59.934 40.741 0.00 0.00 0.00 3.82
308 333 7.606456 GGAGGAATTTAGAAGTAACATCACACA 59.394 37.037 0.00 0.00 0.00 3.72
309 334 8.324163 AGGAATTTAGAAGTAACATCACACAC 57.676 34.615 0.00 0.00 0.00 3.82
310 335 8.157476 AGGAATTTAGAAGTAACATCACACACT 58.843 33.333 0.00 0.00 0.00 3.55
311 336 8.443937 GGAATTTAGAAGTAACATCACACACTC 58.556 37.037 0.00 0.00 0.00 3.51
312 337 7.907214 ATTTAGAAGTAACATCACACACTCC 57.093 36.000 0.00 0.00 0.00 3.85
313 338 4.955811 AGAAGTAACATCACACACTCCA 57.044 40.909 0.00 0.00 0.00 3.86
314 339 5.290493 AGAAGTAACATCACACACTCCAA 57.710 39.130 0.00 0.00 0.00 3.53
315 340 5.869579 AGAAGTAACATCACACACTCCAAT 58.130 37.500 0.00 0.00 0.00 3.16
316 341 7.004555 AGAAGTAACATCACACACTCCAATA 57.995 36.000 0.00 0.00 0.00 1.90
317 342 7.624549 AGAAGTAACATCACACACTCCAATAT 58.375 34.615 0.00 0.00 0.00 1.28
318 343 8.758829 AGAAGTAACATCACACACTCCAATATA 58.241 33.333 0.00 0.00 0.00 0.86
319 344 9.378551 GAAGTAACATCACACACTCCAATATAA 57.621 33.333 0.00 0.00 0.00 0.98
320 345 9.905713 AAGTAACATCACACACTCCAATATAAT 57.094 29.630 0.00 0.00 0.00 1.28
321 346 9.905713 AGTAACATCACACACTCCAATATAATT 57.094 29.630 0.00 0.00 0.00 1.40
324 349 9.859427 AACATCACACACTCCAATATAATTTTG 57.141 29.630 0.00 0.00 0.00 2.44
325 350 7.975616 ACATCACACACTCCAATATAATTTTGC 59.024 33.333 0.00 0.00 0.00 3.68
326 351 7.701539 TCACACACTCCAATATAATTTTGCT 57.298 32.000 0.00 0.00 0.00 3.91
327 352 8.121305 TCACACACTCCAATATAATTTTGCTT 57.879 30.769 0.00 0.00 0.00 3.91
328 353 9.237187 TCACACACTCCAATATAATTTTGCTTA 57.763 29.630 0.00 0.00 0.00 3.09
337 362 8.957028 CCAATATAATTTTGCTTATGTGACACG 58.043 33.333 0.22 0.00 0.00 4.49
338 363 9.502145 CAATATAATTTTGCTTATGTGACACGT 57.498 29.630 5.47 5.47 0.00 4.49
344 369 9.900710 AATTTTGCTTATGTGACACGTATTTAA 57.099 25.926 8.32 2.17 0.00 1.52
346 371 8.888332 TTTGCTTATGTGACACGTATTTAATG 57.112 30.769 8.32 0.00 0.00 1.90
347 372 7.835634 TGCTTATGTGACACGTATTTAATGA 57.164 32.000 8.32 0.00 0.00 2.57
348 373 8.257830 TGCTTATGTGACACGTATTTAATGAA 57.742 30.769 8.32 0.00 0.00 2.57
349 374 8.387354 TGCTTATGTGACACGTATTTAATGAAG 58.613 33.333 8.32 3.81 0.00 3.02
350 375 8.600625 GCTTATGTGACACGTATTTAATGAAGA 58.399 33.333 8.32 0.00 0.00 2.87
352 377 9.863845 TTATGTGACACGTATTTAATGAAGAGA 57.136 29.630 8.32 0.00 0.00 3.10
353 378 8.771920 ATGTGACACGTATTTAATGAAGAGAA 57.228 30.769 0.00 0.00 0.00 2.87
354 379 8.596271 TGTGACACGTATTTAATGAAGAGAAA 57.404 30.769 0.22 0.00 0.00 2.52
355 380 8.708742 TGTGACACGTATTTAATGAAGAGAAAG 58.291 33.333 0.22 0.00 0.00 2.62
356 381 8.922676 GTGACACGTATTTAATGAAGAGAAAGA 58.077 33.333 0.00 0.00 0.00 2.52
357 382 9.653287 TGACACGTATTTAATGAAGAGAAAGAT 57.347 29.630 0.00 0.00 0.00 2.40
358 383 9.907576 GACACGTATTTAATGAAGAGAAAGATG 57.092 33.333 0.00 0.00 0.00 2.90
359 384 8.391106 ACACGTATTTAATGAAGAGAAAGATGC 58.609 33.333 0.00 0.00 0.00 3.91
360 385 8.607459 CACGTATTTAATGAAGAGAAAGATGCT 58.393 33.333 0.00 0.00 0.00 3.79
361 386 9.167311 ACGTATTTAATGAAGAGAAAGATGCTT 57.833 29.630 0.00 0.00 0.00 3.91
362 387 9.430838 CGTATTTAATGAAGAGAAAGATGCTTG 57.569 33.333 0.00 0.00 0.00 4.01
365 390 5.640189 AATGAAGAGAAAGATGCTTGTGG 57.360 39.130 0.00 0.00 0.00 4.17
366 391 4.090761 TGAAGAGAAAGATGCTTGTGGT 57.909 40.909 0.00 0.00 0.00 4.16
367 392 5.227569 TGAAGAGAAAGATGCTTGTGGTA 57.772 39.130 0.00 0.00 0.00 3.25
368 393 5.620206 TGAAGAGAAAGATGCTTGTGGTAA 58.380 37.500 0.00 0.00 0.00 2.85
369 394 5.470098 TGAAGAGAAAGATGCTTGTGGTAAC 59.530 40.000 0.00 0.00 0.00 2.50
370 395 5.234466 AGAGAAAGATGCTTGTGGTAACT 57.766 39.130 0.00 0.00 37.61 2.24
371 396 6.360370 AGAGAAAGATGCTTGTGGTAACTA 57.640 37.500 0.00 0.00 37.61 2.24
372 397 6.402222 AGAGAAAGATGCTTGTGGTAACTAG 58.598 40.000 0.00 0.00 37.61 2.57
391 416 6.276832 ACTAGCTAAGTTACCGAAACATCA 57.723 37.500 0.00 0.00 40.83 3.07
392 417 6.098017 ACTAGCTAAGTTACCGAAACATCAC 58.902 40.000 0.00 0.00 40.83 3.06
393 418 4.890088 AGCTAAGTTACCGAAACATCACA 58.110 39.130 0.00 0.00 40.83 3.58
394 419 4.929808 AGCTAAGTTACCGAAACATCACAG 59.070 41.667 0.00 0.00 40.83 3.66
395 420 4.927425 GCTAAGTTACCGAAACATCACAGA 59.073 41.667 3.87 0.00 40.83 3.41
396 421 5.163982 GCTAAGTTACCGAAACATCACAGAC 60.164 44.000 3.87 0.00 40.83 3.51
397 422 4.602340 AGTTACCGAAACATCACAGACT 57.398 40.909 3.87 0.00 40.83 3.24
398 423 4.557205 AGTTACCGAAACATCACAGACTC 58.443 43.478 3.87 0.00 40.83 3.36
399 424 2.457366 ACCGAAACATCACAGACTCC 57.543 50.000 0.00 0.00 0.00 3.85
400 425 1.691976 ACCGAAACATCACAGACTCCA 59.308 47.619 0.00 0.00 0.00 3.86
401 426 2.104111 ACCGAAACATCACAGACTCCAA 59.896 45.455 0.00 0.00 0.00 3.53
402 427 2.738846 CCGAAACATCACAGACTCCAAG 59.261 50.000 0.00 0.00 0.00 3.61
403 428 3.554960 CCGAAACATCACAGACTCCAAGA 60.555 47.826 0.00 0.00 0.00 3.02
404 429 4.058124 CGAAACATCACAGACTCCAAGAA 58.942 43.478 0.00 0.00 0.00 2.52
405 430 4.511454 CGAAACATCACAGACTCCAAGAAA 59.489 41.667 0.00 0.00 0.00 2.52
406 431 5.559035 CGAAACATCACAGACTCCAAGAAAC 60.559 44.000 0.00 0.00 0.00 2.78
407 432 4.422073 ACATCACAGACTCCAAGAAACA 57.578 40.909 0.00 0.00 0.00 2.83
408 433 4.780815 ACATCACAGACTCCAAGAAACAA 58.219 39.130 0.00 0.00 0.00 2.83
409 434 5.380043 ACATCACAGACTCCAAGAAACAAT 58.620 37.500 0.00 0.00 0.00 2.71
410 435 5.240183 ACATCACAGACTCCAAGAAACAATG 59.760 40.000 0.00 0.00 0.00 2.82
411 436 5.034852 TCACAGACTCCAAGAAACAATGA 57.965 39.130 0.00 0.00 0.00 2.57
412 437 5.059161 TCACAGACTCCAAGAAACAATGAG 58.941 41.667 0.00 0.00 0.00 2.90
413 438 4.818546 CACAGACTCCAAGAAACAATGAGT 59.181 41.667 0.00 0.00 38.90 3.41
414 439 5.297776 CACAGACTCCAAGAAACAATGAGTT 59.702 40.000 0.00 0.00 43.89 3.01
443 468 8.445275 AACCTAATAAATACATCGTTGCATGA 57.555 30.769 0.00 0.00 0.00 3.07
444 469 7.861630 ACCTAATAAATACATCGTTGCATGAC 58.138 34.615 0.00 0.00 0.00 3.06
445 470 7.497579 ACCTAATAAATACATCGTTGCATGACA 59.502 33.333 0.00 0.00 0.00 3.58
446 471 7.798516 CCTAATAAATACATCGTTGCATGACAC 59.201 37.037 0.00 0.00 0.00 3.67
447 472 6.925610 ATAAATACATCGTTGCATGACACT 57.074 33.333 0.00 0.00 0.00 3.55
448 473 8.432110 AATAAATACATCGTTGCATGACACTA 57.568 30.769 0.00 0.00 0.00 2.74
449 474 5.718649 AATACATCGTTGCATGACACTAC 57.281 39.130 0.00 0.00 0.00 2.73
450 475 3.038788 ACATCGTTGCATGACACTACA 57.961 42.857 0.00 0.00 0.00 2.74
451 476 3.599343 ACATCGTTGCATGACACTACAT 58.401 40.909 0.00 0.00 0.00 2.29
452 477 4.754322 ACATCGTTGCATGACACTACATA 58.246 39.130 0.00 0.00 0.00 2.29
453 478 4.805719 ACATCGTTGCATGACACTACATAG 59.194 41.667 0.00 0.00 0.00 2.23
454 479 4.712122 TCGTTGCATGACACTACATAGA 57.288 40.909 0.00 0.00 0.00 1.98
455 480 5.262588 TCGTTGCATGACACTACATAGAT 57.737 39.130 0.00 0.00 0.00 1.98
456 481 5.043248 TCGTTGCATGACACTACATAGATG 58.957 41.667 0.00 0.00 0.00 2.90
457 482 4.805719 CGTTGCATGACACTACATAGATGT 59.194 41.667 0.00 0.08 44.48 3.06
458 483 5.291858 CGTTGCATGACACTACATAGATGTT 59.708 40.000 0.00 0.00 41.97 2.71
459 484 6.508563 CGTTGCATGACACTACATAGATGTTC 60.509 42.308 0.00 0.00 41.97 3.18
460 485 5.359756 TGCATGACACTACATAGATGTTCC 58.640 41.667 0.00 0.00 41.97 3.62
461 486 5.129320 TGCATGACACTACATAGATGTTCCT 59.871 40.000 0.00 0.00 41.97 3.36
462 487 6.323739 TGCATGACACTACATAGATGTTCCTA 59.676 38.462 0.00 0.00 41.97 2.94
463 488 6.642950 GCATGACACTACATAGATGTTCCTAC 59.357 42.308 0.00 0.00 41.97 3.18
464 489 6.710597 TGACACTACATAGATGTTCCTACC 57.289 41.667 0.00 0.00 41.97 3.18
465 490 5.597182 TGACACTACATAGATGTTCCTACCC 59.403 44.000 0.00 0.00 41.97 3.69
466 491 5.525484 ACACTACATAGATGTTCCTACCCA 58.475 41.667 0.00 0.00 41.97 4.51
467 492 5.363005 ACACTACATAGATGTTCCTACCCAC 59.637 44.000 0.00 0.00 41.97 4.61
468 493 5.598830 CACTACATAGATGTTCCTACCCACT 59.401 44.000 0.00 0.00 41.97 4.00
469 494 6.776116 CACTACATAGATGTTCCTACCCACTA 59.224 42.308 0.00 0.00 41.97 2.74
470 495 7.451877 CACTACATAGATGTTCCTACCCACTAT 59.548 40.741 0.00 0.00 41.97 2.12
471 496 6.672266 ACATAGATGTTCCTACCCACTATG 57.328 41.667 0.00 0.00 37.90 2.23
472 497 5.544176 ACATAGATGTTCCTACCCACTATGG 59.456 44.000 0.81 0.00 37.90 2.74
473 498 4.280789 AGATGTTCCTACCCACTATGGA 57.719 45.455 0.00 0.00 40.96 3.41
474 499 4.227197 AGATGTTCCTACCCACTATGGAG 58.773 47.826 0.00 0.00 40.96 3.86
475 500 2.759355 TGTTCCTACCCACTATGGAGG 58.241 52.381 0.00 0.00 40.96 4.30
476 501 2.045326 TGTTCCTACCCACTATGGAGGT 59.955 50.000 0.00 1.66 40.96 3.85
477 502 3.272818 TGTTCCTACCCACTATGGAGGTA 59.727 47.826 0.00 3.53 40.96 3.08
486 511 9.629878 CTACCCACTATGGAGGTAGTAATATAG 57.370 40.741 16.50 0.00 45.39 1.31
487 512 8.009242 ACCCACTATGGAGGTAGTAATATAGT 57.991 38.462 0.00 0.00 40.96 2.12
488 513 8.114743 ACCCACTATGGAGGTAGTAATATAGTC 58.885 40.741 0.00 0.00 40.96 2.59
489 514 8.337739 CCCACTATGGAGGTAGTAATATAGTCT 58.662 40.741 0.00 0.00 40.96 3.24
494 519 8.712168 ATGGAGGTAGTAATATAGTCTAGGGA 57.288 38.462 0.00 0.00 0.00 4.20
495 520 8.529952 TGGAGGTAGTAATATAGTCTAGGGAA 57.470 38.462 0.00 0.00 0.00 3.97
496 521 8.613034 TGGAGGTAGTAATATAGTCTAGGGAAG 58.387 40.741 0.00 0.00 0.00 3.46
497 522 8.613923 GGAGGTAGTAATATAGTCTAGGGAAGT 58.386 40.741 0.00 0.00 0.00 3.01
498 523 9.452287 GAGGTAGTAATATAGTCTAGGGAAGTG 57.548 40.741 0.00 0.00 0.00 3.16
499 524 8.957926 AGGTAGTAATATAGTCTAGGGAAGTGT 58.042 37.037 0.00 0.00 0.00 3.55
500 525 9.012161 GGTAGTAATATAGTCTAGGGAAGTGTG 57.988 40.741 0.00 0.00 0.00 3.82
501 526 9.571816 GTAGTAATATAGTCTAGGGAAGTGTGT 57.428 37.037 0.00 0.00 0.00 3.72
506 531 9.490083 AATATAGTCTAGGGAAGTGTGTAAGTT 57.510 33.333 0.00 0.00 0.00 2.66
508 533 6.587206 AGTCTAGGGAAGTGTGTAAGTTAC 57.413 41.667 6.06 6.06 0.00 2.50
509 534 6.313324 AGTCTAGGGAAGTGTGTAAGTTACT 58.687 40.000 14.00 0.00 0.00 2.24
510 535 7.465116 AGTCTAGGGAAGTGTGTAAGTTACTA 58.535 38.462 14.00 1.06 0.00 1.82
511 536 7.611079 AGTCTAGGGAAGTGTGTAAGTTACTAG 59.389 40.741 14.00 4.64 33.84 2.57
512 537 7.392953 GTCTAGGGAAGTGTGTAAGTTACTAGT 59.607 40.741 14.00 0.00 34.03 2.57
513 538 6.990908 AGGGAAGTGTGTAAGTTACTAGTT 57.009 37.500 14.00 11.29 0.00 2.24
514 539 7.370905 AGGGAAGTGTGTAAGTTACTAGTTT 57.629 36.000 14.00 4.33 0.00 2.66
515 540 8.482852 AGGGAAGTGTGTAAGTTACTAGTTTA 57.517 34.615 14.00 0.00 0.00 2.01
516 541 9.097946 AGGGAAGTGTGTAAGTTACTAGTTTAT 57.902 33.333 14.00 0.00 0.00 1.40
517 542 9.148104 GGGAAGTGTGTAAGTTACTAGTTTATG 57.852 37.037 14.00 0.00 0.00 1.90
518 543 9.702494 GGAAGTGTGTAAGTTACTAGTTTATGT 57.298 33.333 14.00 0.00 0.00 2.29
525 550 9.211485 TGTAAGTTACTAGTTTATGTTCTTGCC 57.789 33.333 14.00 0.00 0.00 4.52
526 551 7.683437 AAGTTACTAGTTTATGTTCTTGCCC 57.317 36.000 0.00 0.00 0.00 5.36
527 552 6.775708 AGTTACTAGTTTATGTTCTTGCCCA 58.224 36.000 0.00 0.00 0.00 5.36
528 553 7.402862 AGTTACTAGTTTATGTTCTTGCCCAT 58.597 34.615 0.00 0.00 0.00 4.00
529 554 7.888546 AGTTACTAGTTTATGTTCTTGCCCATT 59.111 33.333 0.00 0.00 0.00 3.16
530 555 6.515272 ACTAGTTTATGTTCTTGCCCATTG 57.485 37.500 0.00 0.00 0.00 2.82
531 556 6.010219 ACTAGTTTATGTTCTTGCCCATTGT 58.990 36.000 0.00 0.00 0.00 2.71
532 557 5.138125 AGTTTATGTTCTTGCCCATTGTG 57.862 39.130 0.00 0.00 0.00 3.33
533 558 4.832266 AGTTTATGTTCTTGCCCATTGTGA 59.168 37.500 0.00 0.00 0.00 3.58
534 559 4.782019 TTATGTTCTTGCCCATTGTGAC 57.218 40.909 0.00 0.00 0.00 3.67
535 560 1.327303 TGTTCTTGCCCATTGTGACC 58.673 50.000 0.00 0.00 0.00 4.02
536 561 1.327303 GTTCTTGCCCATTGTGACCA 58.673 50.000 0.00 0.00 0.00 4.02
537 562 1.270550 GTTCTTGCCCATTGTGACCAG 59.729 52.381 0.00 0.00 0.00 4.00
538 563 0.895100 TCTTGCCCATTGTGACCAGC 60.895 55.000 0.00 0.00 0.00 4.85
539 564 1.880819 CTTGCCCATTGTGACCAGCC 61.881 60.000 0.00 0.00 0.00 4.85
540 565 2.036256 GCCCATTGTGACCAGCCT 59.964 61.111 0.00 0.00 0.00 4.58
541 566 1.302949 GCCCATTGTGACCAGCCTA 59.697 57.895 0.00 0.00 0.00 3.93
542 567 0.323360 GCCCATTGTGACCAGCCTAA 60.323 55.000 0.00 0.00 0.00 2.69
543 568 1.755179 CCCATTGTGACCAGCCTAAG 58.245 55.000 0.00 0.00 0.00 2.18
544 569 1.098050 CCATTGTGACCAGCCTAAGC 58.902 55.000 0.00 0.00 40.32 3.09
545 570 1.614051 CCATTGTGACCAGCCTAAGCA 60.614 52.381 0.00 0.00 43.56 3.91
559 584 1.455786 CTAAGCAGTGACCACGAAACG 59.544 52.381 0.00 0.00 36.20 3.60
560 585 0.179094 AAGCAGTGACCACGAAACGA 60.179 50.000 0.00 0.00 36.20 3.85
561 586 0.179094 AGCAGTGACCACGAAACGAA 60.179 50.000 0.00 0.00 36.20 3.85
562 587 0.653636 GCAGTGACCACGAAACGAAA 59.346 50.000 0.00 0.00 36.20 3.46
563 588 1.593793 GCAGTGACCACGAAACGAAAC 60.594 52.381 0.00 0.00 36.20 2.78
564 589 1.661617 CAGTGACCACGAAACGAAACA 59.338 47.619 0.00 0.00 36.20 2.83
565 590 2.286833 CAGTGACCACGAAACGAAACAT 59.713 45.455 0.00 0.00 36.20 2.71
566 591 2.940410 AGTGACCACGAAACGAAACATT 59.060 40.909 0.00 0.00 36.20 2.71
567 592 3.033185 GTGACCACGAAACGAAACATTG 58.967 45.455 0.00 0.00 0.00 2.82
568 593 2.937149 TGACCACGAAACGAAACATTGA 59.063 40.909 0.00 0.00 0.00 2.57
600 625 1.870055 AACCTCGAGCCGTTTCGCTA 61.870 55.000 6.99 0.00 39.87 4.26
601 626 1.586564 CCTCGAGCCGTTTCGCTAG 60.587 63.158 6.99 0.00 39.87 3.42
603 628 2.202623 CGAGCCGTTTCGCTAGCT 60.203 61.111 13.93 0.00 39.87 3.32
606 631 1.004918 AGCCGTTTCGCTAGCTGTT 60.005 52.632 13.93 0.00 37.32 3.16
609 634 1.359848 CCGTTTCGCTAGCTGTTGAT 58.640 50.000 13.93 0.00 0.00 2.57
611 636 2.474526 CCGTTTCGCTAGCTGTTGATTG 60.475 50.000 13.93 0.00 0.00 2.67
612 637 2.509870 GTTTCGCTAGCTGTTGATTGC 58.490 47.619 13.93 0.00 0.00 3.56
613 638 4.961622 CGCTAGCTGTTGATTGCG 57.038 55.556 13.93 0.00 45.28 4.85
614 639 1.297158 CGCTAGCTGTTGATTGCGC 60.297 57.895 13.93 0.00 44.86 6.09
615 640 1.297158 GCTAGCTGTTGATTGCGCG 60.297 57.895 7.70 0.00 0.00 6.86
616 641 1.297158 CTAGCTGTTGATTGCGCGC 60.297 57.895 27.26 27.26 0.00 6.86
617 642 2.637715 CTAGCTGTTGATTGCGCGCC 62.638 60.000 30.77 14.34 0.00 6.53
619 644 3.787676 CTGTTGATTGCGCGCCGA 61.788 61.111 30.77 18.25 0.00 5.54
620 645 3.707156 CTGTTGATTGCGCGCCGAG 62.707 63.158 30.77 9.51 0.00 4.63
646 675 4.078516 AACTAGCACGGCCCGGAC 62.079 66.667 8.57 0.00 0.00 4.79
667 696 1.478105 CATGGTCTGGTCGTGATCTGA 59.522 52.381 0.00 0.00 0.00 3.27
697 726 0.815615 GCCGCAGTAATTCCTCCTGG 60.816 60.000 0.00 0.00 0.00 4.45
702 731 0.548510 AGTAATTCCTCCTGGCCTGC 59.451 55.000 3.32 0.00 0.00 4.85
704 733 2.608970 TAATTCCTCCTGGCCTGCGC 62.609 60.000 3.32 0.00 0.00 6.09
721 750 4.858433 CGGCGCCCATTGCACATG 62.858 66.667 23.46 0.00 41.33 3.21
732 761 2.875485 GCACATGCACTGCTCTGG 59.125 61.111 10.36 0.00 41.59 3.86
733 762 2.875485 CACATGCACTGCTCTGGC 59.125 61.111 1.98 0.00 39.26 4.85
734 763 1.674651 CACATGCACTGCTCTGGCT 60.675 57.895 1.98 0.00 39.59 4.75
735 764 1.674651 ACATGCACTGCTCTGGCTG 60.675 57.895 1.98 0.00 42.04 4.85
736 765 2.045242 ATGCACTGCTCTGGCTGG 60.045 61.111 1.98 0.00 40.90 4.85
739 768 3.054503 CACTGCTCTGGCTGGCAC 61.055 66.667 0.00 0.00 40.90 5.01
740 769 4.341783 ACTGCTCTGGCTGGCACC 62.342 66.667 0.00 0.00 40.90 5.01
744 773 3.052082 CTCTGGCTGGCACCGTTG 61.052 66.667 0.00 0.00 0.00 4.10
745 774 4.641645 TCTGGCTGGCACCGTTGG 62.642 66.667 0.00 0.00 0.00 3.77
763 792 4.927782 GTGCACCAGTGTCGCCCA 62.928 66.667 5.22 0.00 0.00 5.36
776 805 3.994853 GCCCAGCCAAGTTGCCAC 61.995 66.667 0.00 0.00 0.00 5.01
790 819 4.778415 CCACTCGCCTCGACCGTG 62.778 72.222 1.28 1.88 33.75 4.94
808 847 3.546417 CCGTGTCGAGAATACTAGCTCAC 60.546 52.174 0.00 0.00 0.00 3.51
809 848 3.310227 CGTGTCGAGAATACTAGCTCACT 59.690 47.826 0.00 0.00 0.00 3.41
821 860 1.244816 AGCTCACTACACTGTGCGTA 58.755 50.000 7.90 0.00 37.81 4.42
830 869 2.049526 CTGTGCGTACAGCCGTGA 60.050 61.111 20.75 0.00 46.93 4.35
831 870 2.372690 CTGTGCGTACAGCCGTGAC 61.373 63.158 20.75 0.77 46.93 3.67
877 916 1.872679 CGAGCTCCGGTTCGTTAGC 60.873 63.158 8.47 0.96 40.42 3.09
887 926 1.375908 TTCGTTAGCTGGCCTGCTG 60.376 57.895 38.75 25.77 43.87 4.41
908 947 4.585879 TGTGCTCTGAACCCCTATAAAAC 58.414 43.478 0.00 0.00 0.00 2.43
911 950 3.202373 GCTCTGAACCCCTATAAAACCCT 59.798 47.826 0.00 0.00 0.00 4.34
922 961 2.413310 TAAAACCCTCCATTCGCTCC 57.587 50.000 0.00 0.00 0.00 4.70
923 962 0.404040 AAAACCCTCCATTCGCTCCA 59.596 50.000 0.00 0.00 0.00 3.86
929 968 1.003839 TCCATTCGCTCCACACACC 60.004 57.895 0.00 0.00 0.00 4.16
930 969 2.040544 CCATTCGCTCCACACACCC 61.041 63.158 0.00 0.00 0.00 4.61
960 999 4.093952 CGCGCCACTGAAGCCAAG 62.094 66.667 0.00 0.00 0.00 3.61
961 1000 4.410743 GCGCCACTGAAGCCAAGC 62.411 66.667 0.00 0.00 0.00 4.01
962 1001 3.741476 CGCCACTGAAGCCAAGCC 61.741 66.667 0.00 0.00 0.00 4.35
963 1002 2.598394 GCCACTGAAGCCAAGCCA 60.598 61.111 0.00 0.00 0.00 4.75
966 1005 1.288127 CACTGAAGCCAAGCCAAGC 59.712 57.895 0.00 0.00 0.00 4.01
1022 1061 2.486504 CATGGACATGGCGCACAC 59.513 61.111 10.83 0.00 35.24 3.82
1456 1504 1.651240 CGCCCTCGACGACCTCTTTA 61.651 60.000 0.00 0.00 38.10 1.85
1704 1764 1.753078 CGAGATCCTCACGGTGGGA 60.753 63.158 10.19 14.45 35.96 4.37
2036 2137 4.819761 GCTCCTGTCGATGCGCCA 62.820 66.667 4.18 0.00 0.00 5.69
2254 2355 2.959372 CGTCGCTGTGGTACCAGA 59.041 61.111 16.93 14.18 34.23 3.86
2434 2535 2.305607 TGCATCCACCAGTACCCCC 61.306 63.158 0.00 0.00 0.00 5.40
2435 2536 2.305607 GCATCCACCAGTACCCCCA 61.306 63.158 0.00 0.00 0.00 4.96
2487 2599 1.874231 CATGCATGCTAGCTTCCTCAG 59.126 52.381 20.33 0.00 34.99 3.35
2489 2601 1.165284 GCATGCTAGCTTCCTCAGGC 61.165 60.000 17.23 3.64 0.00 4.85
2490 2602 0.179702 CATGCTAGCTTCCTCAGGCA 59.820 55.000 17.23 0.00 0.00 4.75
2491 2603 0.179936 ATGCTAGCTTCCTCAGGCAC 59.820 55.000 17.23 0.00 32.52 5.01
2497 2621 0.811616 GCTTCCTCAGGCACCGTATG 60.812 60.000 0.00 0.00 0.00 2.39
2580 2719 5.873164 CCCAACCAAGTTCATGTAGTACTAC 59.127 44.000 23.58 23.58 36.63 2.73
2581 2720 6.295688 CCCAACCAAGTTCATGTAGTACTACT 60.296 42.308 28.56 14.70 37.00 2.57
2582 2721 7.093640 CCCAACCAAGTTCATGTAGTACTACTA 60.094 40.741 28.56 17.69 37.00 1.82
2623 2762 4.301072 TCCTTCCATGAACAAACCCTAG 57.699 45.455 0.00 0.00 0.00 3.02
2624 2763 2.755103 CCTTCCATGAACAAACCCTAGC 59.245 50.000 0.00 0.00 0.00 3.42
2625 2764 3.562176 CCTTCCATGAACAAACCCTAGCT 60.562 47.826 0.00 0.00 0.00 3.32
2626 2765 4.324254 CCTTCCATGAACAAACCCTAGCTA 60.324 45.833 0.00 0.00 0.00 3.32
2635 2774 7.280356 TGAACAAACCCTAGCTATTTCCTATC 58.720 38.462 0.00 0.00 0.00 2.08
2643 2782 6.322456 CCCTAGCTATTTCCTATCATCGATCA 59.678 42.308 0.00 0.00 0.00 2.92
2656 2795 0.679640 TCGATCAATGGGTTGGTGCC 60.680 55.000 0.00 0.00 35.99 5.01
2657 2796 0.964860 CGATCAATGGGTTGGTGCCA 60.965 55.000 0.00 0.00 35.99 4.92
2658 2797 1.265236 GATCAATGGGTTGGTGCCAA 58.735 50.000 0.00 0.00 35.99 4.52
2659 2798 1.622811 GATCAATGGGTTGGTGCCAAA 59.377 47.619 5.09 0.00 37.70 3.28
2660 2799 1.727062 TCAATGGGTTGGTGCCAAAT 58.273 45.000 5.09 0.00 37.70 2.32
2661 2800 1.347050 TCAATGGGTTGGTGCCAAATG 59.653 47.619 5.09 1.44 37.70 2.32
2662 2801 0.036590 AATGGGTTGGTGCCAAATGC 59.963 50.000 5.09 0.00 37.70 3.56
2663 2802 0.837260 ATGGGTTGGTGCCAAATGCT 60.837 50.000 5.09 0.00 42.00 3.79
2664 2803 0.178950 TGGGTTGGTGCCAAATGCTA 60.179 50.000 5.09 0.00 42.00 3.49
2665 2804 0.532115 GGGTTGGTGCCAAATGCTAG 59.468 55.000 5.09 0.00 42.00 3.42
2666 2805 1.544724 GGTTGGTGCCAAATGCTAGA 58.455 50.000 5.09 0.00 42.00 2.43
2667 2806 2.102578 GGTTGGTGCCAAATGCTAGAT 58.897 47.619 5.09 0.00 42.00 1.98
2668 2807 2.497273 GGTTGGTGCCAAATGCTAGATT 59.503 45.455 5.09 0.00 42.00 2.40
2669 2808 3.514645 GTTGGTGCCAAATGCTAGATTG 58.485 45.455 5.09 0.00 42.00 2.67
2670 2809 1.477700 TGGTGCCAAATGCTAGATTGC 59.522 47.619 0.00 0.00 42.00 3.56
2671 2810 1.202452 GGTGCCAAATGCTAGATTGCC 60.202 52.381 0.00 0.00 42.00 4.52
2672 2811 1.477700 GTGCCAAATGCTAGATTGCCA 59.522 47.619 0.00 0.00 42.00 4.92
2673 2812 2.101917 GTGCCAAATGCTAGATTGCCAT 59.898 45.455 0.00 0.00 42.00 4.40
2674 2813 2.101750 TGCCAAATGCTAGATTGCCATG 59.898 45.455 0.00 0.00 42.00 3.66
2675 2814 2.363038 GCCAAATGCTAGATTGCCATGA 59.637 45.455 0.00 0.00 36.87 3.07
2676 2815 3.181473 GCCAAATGCTAGATTGCCATGAA 60.181 43.478 0.00 0.00 36.87 2.57
2677 2816 4.617959 CCAAATGCTAGATTGCCATGAAG 58.382 43.478 0.00 0.00 0.00 3.02
2678 2817 4.340097 CCAAATGCTAGATTGCCATGAAGA 59.660 41.667 0.00 0.00 0.00 2.87
2679 2818 5.163488 CCAAATGCTAGATTGCCATGAAGAA 60.163 40.000 0.00 0.00 0.00 2.52
2680 2819 5.511234 AATGCTAGATTGCCATGAAGAAC 57.489 39.130 0.00 0.00 0.00 3.01
2681 2820 3.954200 TGCTAGATTGCCATGAAGAACA 58.046 40.909 0.00 0.00 0.00 3.18
2682 2821 3.943381 TGCTAGATTGCCATGAAGAACAG 59.057 43.478 0.00 0.00 0.00 3.16
2683 2822 3.944015 GCTAGATTGCCATGAAGAACAGT 59.056 43.478 0.00 0.00 0.00 3.55
2684 2823 5.118990 GCTAGATTGCCATGAAGAACAGTA 58.881 41.667 0.00 0.00 0.00 2.74
2685 2824 5.007136 GCTAGATTGCCATGAAGAACAGTAC 59.993 44.000 0.00 0.00 0.00 2.73
2686 2825 4.910195 AGATTGCCATGAAGAACAGTACA 58.090 39.130 0.00 0.00 0.00 2.90
2687 2826 4.697352 AGATTGCCATGAAGAACAGTACAC 59.303 41.667 0.00 0.00 0.00 2.90
2688 2827 3.483808 TGCCATGAAGAACAGTACACA 57.516 42.857 0.00 0.00 0.00 3.72
2689 2828 4.019792 TGCCATGAAGAACAGTACACAT 57.980 40.909 0.00 0.00 0.00 3.21
2690 2829 5.159273 TGCCATGAAGAACAGTACACATA 57.841 39.130 0.00 0.00 0.00 2.29
2691 2830 4.935205 TGCCATGAAGAACAGTACACATAC 59.065 41.667 0.00 0.00 0.00 2.39
2692 2831 5.178797 GCCATGAAGAACAGTACACATACT 58.821 41.667 0.00 0.00 42.74 2.12
2693 2832 6.071051 TGCCATGAAGAACAGTACACATACTA 60.071 38.462 0.00 0.00 39.80 1.82
2694 2833 6.986817 GCCATGAAGAACAGTACACATACTAT 59.013 38.462 0.00 0.00 39.80 2.12
2695 2834 7.495934 GCCATGAAGAACAGTACACATACTATT 59.504 37.037 0.00 0.00 39.80 1.73
2810 2961 4.843984 CGTTAGGTTTCAAATAAGTGTGCG 59.156 41.667 0.00 0.00 0.00 5.34
2811 2962 5.559417 CGTTAGGTTTCAAATAAGTGTGCGT 60.559 40.000 0.00 0.00 0.00 5.24
2812 2963 4.223320 AGGTTTCAAATAAGTGTGCGTG 57.777 40.909 0.00 0.00 0.00 5.34
2813 2964 2.724174 GGTTTCAAATAAGTGTGCGTGC 59.276 45.455 0.00 0.00 0.00 5.34
2943 4316 1.450905 GTGCACGTCGTGAAGTTACTC 59.549 52.381 28.83 8.83 35.23 2.59
2958 4331 0.889638 TACTCCCCTATCGCAGCTCG 60.890 60.000 0.00 0.00 40.15 5.03
2962 4335 2.049618 CCTATCGCAGCTCGGCTC 60.050 66.667 5.87 0.00 36.40 4.70
2963 4336 2.724377 CTATCGCAGCTCGGCTCA 59.276 61.111 5.87 0.00 36.40 4.26
2964 4337 1.371512 CTATCGCAGCTCGGCTCAG 60.372 63.158 5.87 0.00 36.40 3.35
3002 4375 1.656652 ATTTACAAGCTCGCGCAGAT 58.343 45.000 8.75 0.00 39.10 2.90
3003 4376 0.999406 TTTACAAGCTCGCGCAGATC 59.001 50.000 8.75 1.31 39.10 2.75
3004 4377 0.108851 TTACAAGCTCGCGCAGATCA 60.109 50.000 8.75 0.00 39.10 2.92
3005 4378 0.802222 TACAAGCTCGCGCAGATCAC 60.802 55.000 8.75 0.00 39.10 3.06
3006 4379 2.096442 CAAGCTCGCGCAGATCACA 61.096 57.895 8.75 0.00 39.10 3.58
3050 4423 4.320421 GCTGCATCGCCATTCAATATTACA 60.320 41.667 0.00 0.00 0.00 2.41
3093 4466 9.481340 TCATTTGAAGAAATATCTACTCATCGG 57.519 33.333 0.00 0.00 33.77 4.18
3094 4467 9.481340 CATTTGAAGAAATATCTACTCATCGGA 57.519 33.333 0.00 0.00 33.77 4.55
3096 4469 9.698309 TTTGAAGAAATATCTACTCATCGGATC 57.302 33.333 0.00 0.00 33.77 3.36
3097 4470 8.409358 TGAAGAAATATCTACTCATCGGATCA 57.591 34.615 0.00 0.00 33.77 2.92
3100 4473 8.183104 AGAAATATCTACTCATCGGATCACAA 57.817 34.615 0.00 0.00 32.88 3.33
3124 4497 0.891904 TTGGCCGAGCAAAACCTACC 60.892 55.000 0.00 0.00 0.00 3.18
3144 4517 2.154462 CCAAATTAGGGAGCGCCTATG 58.846 52.381 2.29 0.00 0.00 2.23
3146 4519 3.244422 CCAAATTAGGGAGCGCCTATGTA 60.244 47.826 2.29 0.00 0.00 2.29
3147 4520 3.963428 AATTAGGGAGCGCCTATGTAG 57.037 47.619 2.29 0.00 0.00 2.74
3210 4583 5.534207 TTGCTCAATCAACAATCCAAACT 57.466 34.783 0.00 0.00 0.00 2.66
3214 4587 5.337009 GCTCAATCAACAATCCAAACTCCAT 60.337 40.000 0.00 0.00 0.00 3.41
3215 4588 6.271488 TCAATCAACAATCCAAACTCCATC 57.729 37.500 0.00 0.00 0.00 3.51
3216 4589 4.970662 ATCAACAATCCAAACTCCATCG 57.029 40.909 0.00 0.00 0.00 3.84
3217 4590 4.014569 TCAACAATCCAAACTCCATCGA 57.985 40.909 0.00 0.00 0.00 3.59
3218 4591 3.751175 TCAACAATCCAAACTCCATCGAC 59.249 43.478 0.00 0.00 0.00 4.20
3219 4592 3.417069 ACAATCCAAACTCCATCGACA 57.583 42.857 0.00 0.00 0.00 4.35
3220 4593 3.074412 ACAATCCAAACTCCATCGACAC 58.926 45.455 0.00 0.00 0.00 3.67
3221 4594 2.403252 ATCCAAACTCCATCGACACC 57.597 50.000 0.00 0.00 0.00 4.16
3222 4595 0.037697 TCCAAACTCCATCGACACCG 60.038 55.000 0.00 0.00 37.07 4.94
3223 4596 1.635663 CCAAACTCCATCGACACCGC 61.636 60.000 0.00 0.00 35.37 5.68
3224 4597 1.736645 AAACTCCATCGACACCGCG 60.737 57.895 0.00 0.00 35.37 6.46
3225 4598 2.430382 AAACTCCATCGACACCGCGT 62.430 55.000 4.92 0.00 35.37 6.01
3226 4599 2.579787 CTCCATCGACACCGCGTC 60.580 66.667 4.92 0.00 41.62 5.19
3227 4600 3.336715 CTCCATCGACACCGCGTCA 62.337 63.158 4.92 0.00 45.70 4.35
3228 4601 2.431771 CCATCGACACCGCGTCAA 60.432 61.111 4.92 0.00 45.70 3.18
3229 4602 2.444624 CCATCGACACCGCGTCAAG 61.445 63.158 4.92 0.00 45.70 3.02
3230 4603 1.443702 CATCGACACCGCGTCAAGA 60.444 57.895 4.92 0.00 45.70 3.02
3231 4604 0.802222 CATCGACACCGCGTCAAGAT 60.802 55.000 4.92 0.16 45.70 2.40
3232 4605 0.802222 ATCGACACCGCGTCAAGATG 60.802 55.000 4.92 0.00 45.70 2.90
3233 4606 2.444624 CGACACCGCGTCAAGATGG 61.445 63.158 4.92 0.00 45.70 3.51
3234 4607 2.740714 GACACCGCGTCAAGATGGC 61.741 63.158 4.92 0.00 44.69 4.40
3235 4608 2.741985 CACCGCGTCAAGATGGCA 60.742 61.111 4.92 0.00 0.00 4.92
3236 4609 2.108514 CACCGCGTCAAGATGGCAT 61.109 57.895 4.92 0.00 0.00 4.40
3320 4695 3.186409 ACGTCATGTTTCTCACAAATCGG 59.814 43.478 0.00 0.00 39.50 4.18
3321 4696 3.431912 CGTCATGTTTCTCACAAATCGGA 59.568 43.478 0.00 0.00 39.50 4.55
3339 4714 1.856265 GAAGCAAACCGTGGGAGCAG 61.856 60.000 0.00 0.00 0.00 4.24
3370 4745 4.285790 TGGGGAGAGGGGTGGCTT 62.286 66.667 0.00 0.00 0.00 4.35
3371 4746 2.941583 GGGGAGAGGGGTGGCTTT 60.942 66.667 0.00 0.00 0.00 3.51
3372 4747 2.356667 GGGAGAGGGGTGGCTTTG 59.643 66.667 0.00 0.00 0.00 2.77
3373 4748 2.539081 GGGAGAGGGGTGGCTTTGT 61.539 63.158 0.00 0.00 0.00 2.83
3374 4749 1.303643 GGAGAGGGGTGGCTTTGTG 60.304 63.158 0.00 0.00 0.00 3.33
3375 4750 1.303643 GAGAGGGGTGGCTTTGTGG 60.304 63.158 0.00 0.00 0.00 4.17
3376 4751 1.774217 AGAGGGGTGGCTTTGTGGA 60.774 57.895 0.00 0.00 0.00 4.02
3377 4752 1.603739 GAGGGGTGGCTTTGTGGAC 60.604 63.158 0.00 0.00 0.00 4.02
3378 4753 2.983592 GGGGTGGCTTTGTGGACG 60.984 66.667 0.00 0.00 0.00 4.79
3379 4754 2.203294 GGGTGGCTTTGTGGACGT 60.203 61.111 0.00 0.00 0.00 4.34
3380 4755 2.258726 GGGTGGCTTTGTGGACGTC 61.259 63.158 7.13 7.13 0.00 4.34
3381 4756 2.258726 GGTGGCTTTGTGGACGTCC 61.259 63.158 28.17 28.17 0.00 4.79
3382 4757 1.525077 GTGGCTTTGTGGACGTCCA 60.525 57.895 33.23 33.23 45.30 4.02
3391 4766 2.447630 TGGACGTCCAGACCATTGT 58.552 52.632 33.23 0.00 42.01 2.71
3392 4767 1.634960 TGGACGTCCAGACCATTGTA 58.365 50.000 33.23 6.51 42.01 2.41
3393 4768 1.972075 TGGACGTCCAGACCATTGTAA 59.028 47.619 33.23 5.92 42.01 2.41
3394 4769 2.369203 TGGACGTCCAGACCATTGTAAA 59.631 45.455 33.23 5.69 42.01 2.01
3395 4770 3.181453 TGGACGTCCAGACCATTGTAAAA 60.181 43.478 33.23 5.20 42.01 1.52
3396 4771 4.007659 GGACGTCCAGACCATTGTAAAAT 58.992 43.478 29.75 0.00 34.74 1.82
3397 4772 4.094442 GGACGTCCAGACCATTGTAAAATC 59.906 45.833 29.75 0.00 34.74 2.17
3398 4773 4.906618 ACGTCCAGACCATTGTAAAATCT 58.093 39.130 0.00 0.00 0.00 2.40
3399 4774 5.313712 ACGTCCAGACCATTGTAAAATCTT 58.686 37.500 0.00 0.00 0.00 2.40
3400 4775 5.768164 ACGTCCAGACCATTGTAAAATCTTT 59.232 36.000 0.00 0.00 0.00 2.52
3401 4776 6.072673 ACGTCCAGACCATTGTAAAATCTTTC 60.073 38.462 0.00 0.00 0.00 2.62
3402 4777 6.149474 CGTCCAGACCATTGTAAAATCTTTCT 59.851 38.462 0.00 0.00 0.00 2.52
3403 4778 7.530863 GTCCAGACCATTGTAAAATCTTTCTC 58.469 38.462 0.00 0.00 0.00 2.87
3404 4779 7.174946 GTCCAGACCATTGTAAAATCTTTCTCA 59.825 37.037 0.00 0.00 0.00 3.27
3405 4780 7.723616 TCCAGACCATTGTAAAATCTTTCTCAA 59.276 33.333 0.00 0.00 0.00 3.02
3406 4781 8.025445 CCAGACCATTGTAAAATCTTTCTCAAG 58.975 37.037 0.00 0.00 0.00 3.02
3407 4782 8.571336 CAGACCATTGTAAAATCTTTCTCAAGT 58.429 33.333 0.00 0.00 0.00 3.16
3408 4783 9.793259 AGACCATTGTAAAATCTTTCTCAAGTA 57.207 29.630 0.00 0.00 0.00 2.24
3428 4803 6.759497 AGTAAACTTGAGATTTACCATGCC 57.241 37.500 4.45 0.00 41.48 4.40
3429 4804 6.245408 AGTAAACTTGAGATTTACCATGCCA 58.755 36.000 4.45 0.00 41.48 4.92
3430 4805 6.719370 AGTAAACTTGAGATTTACCATGCCAA 59.281 34.615 4.45 0.00 41.48 4.52
3431 4806 5.391312 AACTTGAGATTTACCATGCCAAC 57.609 39.130 0.00 0.00 0.00 3.77
3432 4807 4.406456 ACTTGAGATTTACCATGCCAACA 58.594 39.130 0.00 0.00 0.00 3.33
3433 4808 4.218417 ACTTGAGATTTACCATGCCAACAC 59.782 41.667 0.00 0.00 0.00 3.32
3434 4809 3.088532 TGAGATTTACCATGCCAACACC 58.911 45.455 0.00 0.00 0.00 4.16
3435 4810 3.088532 GAGATTTACCATGCCAACACCA 58.911 45.455 0.00 0.00 0.00 4.17
3436 4811 3.701040 GAGATTTACCATGCCAACACCAT 59.299 43.478 0.00 0.00 0.00 3.55
3437 4812 3.448301 AGATTTACCATGCCAACACCATG 59.552 43.478 0.00 0.00 39.74 3.66
3438 4813 2.593925 TTACCATGCCAACACCATGA 57.406 45.000 0.00 0.00 41.97 3.07
3439 4814 2.593925 TACCATGCCAACACCATGAA 57.406 45.000 0.00 0.00 41.97 2.57
3440 4815 0.968405 ACCATGCCAACACCATGAAC 59.032 50.000 0.00 0.00 41.97 3.18
3441 4816 0.967662 CCATGCCAACACCATGAACA 59.032 50.000 0.00 0.00 41.97 3.18
3442 4817 1.067425 CCATGCCAACACCATGAACAG 60.067 52.381 0.00 0.00 41.97 3.16
3443 4818 1.887854 CATGCCAACACCATGAACAGA 59.112 47.619 0.00 0.00 41.97 3.41
3444 4819 2.064434 TGCCAACACCATGAACAGAA 57.936 45.000 0.00 0.00 0.00 3.02
3445 4820 1.955778 TGCCAACACCATGAACAGAAG 59.044 47.619 0.00 0.00 0.00 2.85
3446 4821 1.956477 GCCAACACCATGAACAGAAGT 59.044 47.619 0.00 0.00 0.00 3.01
3447 4822 3.146066 GCCAACACCATGAACAGAAGTA 58.854 45.455 0.00 0.00 0.00 2.24
3448 4823 3.758554 GCCAACACCATGAACAGAAGTAT 59.241 43.478 0.00 0.00 0.00 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.932399 GACGCTTGGTGTAACGTTGT 59.068 50.000 11.99 0.00 39.16 3.32
3 4 0.931702 TGACGCTTGGTGTAACGTTG 59.068 50.000 11.99 0.00 39.16 4.10
4 5 0.932399 GTGACGCTTGGTGTAACGTT 59.068 50.000 5.88 5.88 39.16 3.99
5 6 0.877213 GGTGACGCTTGGTGTAACGT 60.877 55.000 0.00 0.00 42.27 3.99
6 7 1.857364 GGTGACGCTTGGTGTAACG 59.143 57.895 0.00 0.00 38.12 3.18
19 20 0.741221 GGCAATCCTGTCTCGGTGAC 60.741 60.000 3.34 3.34 45.54 3.67
20 21 0.904865 AGGCAATCCTGTCTCGGTGA 60.905 55.000 0.00 0.00 42.34 4.02
21 22 0.460987 GAGGCAATCCTGTCTCGGTG 60.461 60.000 0.00 0.00 44.08 4.94
22 23 1.901085 GAGGCAATCCTGTCTCGGT 59.099 57.895 0.00 0.00 44.08 4.69
23 24 4.844420 GAGGCAATCCTGTCTCGG 57.156 61.111 0.00 0.00 44.08 4.63
26 27 0.463295 CGCATGAGGCAATCCTGTCT 60.463 55.000 0.00 0.00 44.46 3.41
27 28 0.462581 TCGCATGAGGCAATCCTGTC 60.463 55.000 0.00 0.00 44.46 3.51
28 29 0.745845 GTCGCATGAGGCAATCCTGT 60.746 55.000 0.00 0.00 44.46 4.00
32 33 0.855349 CTACGTCGCATGAGGCAATC 59.145 55.000 1.04 0.00 45.17 2.67
127 128 3.121279 CGCACGTACTATACAATGGCATC 59.879 47.826 0.00 0.00 0.00 3.91
128 129 3.057019 CGCACGTACTATACAATGGCAT 58.943 45.455 0.00 0.00 0.00 4.40
132 133 4.348656 AGTGACGCACGTACTATACAATG 58.651 43.478 0.00 0.00 39.64 2.82
133 134 4.627611 AGTGACGCACGTACTATACAAT 57.372 40.909 0.00 0.00 39.64 2.71
134 135 4.424061 AAGTGACGCACGTACTATACAA 57.576 40.909 0.00 0.00 39.64 2.41
135 136 5.739752 ATAAGTGACGCACGTACTATACA 57.260 39.130 0.00 0.00 39.64 2.29
136 137 7.201215 GCATTATAAGTGACGCACGTACTATAC 60.201 40.741 0.00 0.00 39.64 1.47
137 138 6.798476 GCATTATAAGTGACGCACGTACTATA 59.202 38.462 0.00 4.88 39.64 1.31
138 139 5.628193 GCATTATAAGTGACGCACGTACTAT 59.372 40.000 0.00 5.55 39.64 2.12
140 141 3.795101 GCATTATAAGTGACGCACGTACT 59.205 43.478 0.00 0.00 39.64 2.73
160 165 3.063670 GCATGTAAATGCATGTACGCA 57.936 42.857 19.79 6.16 45.75 5.24
201 206 4.219725 GGGTAAATGTAGCAGAGCCAAAAA 59.780 41.667 0.00 0.00 0.00 1.94
211 236 6.376018 GTGTTAATTGAGGGGTAAATGTAGCA 59.624 38.462 0.00 0.00 0.00 3.49
222 247 2.369394 GCAGAGGTGTTAATTGAGGGG 58.631 52.381 0.00 0.00 0.00 4.79
224 249 1.398390 GCGCAGAGGTGTTAATTGAGG 59.602 52.381 0.30 0.00 0.00 3.86
227 252 0.796312 ACGCGCAGAGGTGTTAATTG 59.204 50.000 5.73 0.00 0.00 2.32
232 257 2.430244 CGTACGCGCAGAGGTGTT 60.430 61.111 5.73 0.00 32.06 3.32
269 294 4.087892 CCTCCCCGCTGTGACCAG 62.088 72.222 0.00 0.00 41.91 4.00
270 295 4.631740 TCCTCCCCGCTGTGACCA 62.632 66.667 0.00 0.00 0.00 4.02
271 296 2.198304 AATTCCTCCCCGCTGTGACC 62.198 60.000 0.00 0.00 0.00 4.02
272 297 0.322546 AAATTCCTCCCCGCTGTGAC 60.323 55.000 0.00 0.00 0.00 3.67
273 298 1.209504 CTAAATTCCTCCCCGCTGTGA 59.790 52.381 0.00 0.00 0.00 3.58
274 299 1.209504 TCTAAATTCCTCCCCGCTGTG 59.790 52.381 0.00 0.00 0.00 3.66
275 300 1.580059 TCTAAATTCCTCCCCGCTGT 58.420 50.000 0.00 0.00 0.00 4.40
276 301 2.092914 ACTTCTAAATTCCTCCCCGCTG 60.093 50.000 0.00 0.00 0.00 5.18
277 302 2.197465 ACTTCTAAATTCCTCCCCGCT 58.803 47.619 0.00 0.00 0.00 5.52
278 303 2.711978 ACTTCTAAATTCCTCCCCGC 57.288 50.000 0.00 0.00 0.00 6.13
279 304 5.093849 TGTTACTTCTAAATTCCTCCCCG 57.906 43.478 0.00 0.00 0.00 5.73
280 305 6.542735 GTGATGTTACTTCTAAATTCCTCCCC 59.457 42.308 0.17 0.00 0.00 4.81
281 306 7.065923 GTGTGATGTTACTTCTAAATTCCTCCC 59.934 40.741 0.17 0.00 0.00 4.30
282 307 7.606456 TGTGTGATGTTACTTCTAAATTCCTCC 59.394 37.037 0.17 0.00 0.00 4.30
283 308 8.443937 GTGTGTGATGTTACTTCTAAATTCCTC 58.556 37.037 0.17 0.00 0.00 3.71
284 309 8.157476 AGTGTGTGATGTTACTTCTAAATTCCT 58.843 33.333 0.17 0.00 0.00 3.36
285 310 8.324163 AGTGTGTGATGTTACTTCTAAATTCC 57.676 34.615 0.17 0.00 0.00 3.01
286 311 8.443937 GGAGTGTGTGATGTTACTTCTAAATTC 58.556 37.037 0.17 0.00 0.00 2.17
287 312 7.936847 TGGAGTGTGTGATGTTACTTCTAAATT 59.063 33.333 0.17 0.00 0.00 1.82
288 313 7.450074 TGGAGTGTGTGATGTTACTTCTAAAT 58.550 34.615 0.17 0.00 0.00 1.40
289 314 6.822442 TGGAGTGTGTGATGTTACTTCTAAA 58.178 36.000 0.17 0.00 0.00 1.85
290 315 6.413783 TGGAGTGTGTGATGTTACTTCTAA 57.586 37.500 0.17 0.00 0.00 2.10
291 316 6.413783 TTGGAGTGTGTGATGTTACTTCTA 57.586 37.500 0.17 0.00 0.00 2.10
292 317 4.955811 TGGAGTGTGTGATGTTACTTCT 57.044 40.909 0.17 0.00 0.00 2.85
293 318 7.849804 ATATTGGAGTGTGTGATGTTACTTC 57.150 36.000 0.00 0.00 0.00 3.01
294 319 9.905713 ATTATATTGGAGTGTGTGATGTTACTT 57.094 29.630 0.00 0.00 0.00 2.24
295 320 9.905713 AATTATATTGGAGTGTGTGATGTTACT 57.094 29.630 0.00 0.00 0.00 2.24
298 323 9.859427 CAAAATTATATTGGAGTGTGTGATGTT 57.141 29.630 0.00 0.00 0.00 2.71
299 324 7.975616 GCAAAATTATATTGGAGTGTGTGATGT 59.024 33.333 0.00 0.00 0.00 3.06
300 325 8.192774 AGCAAAATTATATTGGAGTGTGTGATG 58.807 33.333 0.00 0.00 0.00 3.07
301 326 8.297470 AGCAAAATTATATTGGAGTGTGTGAT 57.703 30.769 0.00 0.00 0.00 3.06
302 327 7.701539 AGCAAAATTATATTGGAGTGTGTGA 57.298 32.000 0.00 0.00 0.00 3.58
311 336 8.957028 CGTGTCACATAAGCAAAATTATATTGG 58.043 33.333 3.42 0.00 0.00 3.16
312 337 9.502145 ACGTGTCACATAAGCAAAATTATATTG 57.498 29.630 3.42 0.00 0.00 1.90
318 343 9.900710 TTAAATACGTGTCACATAAGCAAAATT 57.099 25.926 0.00 0.00 0.00 1.82
320 345 9.335891 CATTAAATACGTGTCACATAAGCAAAA 57.664 29.630 0.00 0.00 0.00 2.44
321 346 8.722394 TCATTAAATACGTGTCACATAAGCAAA 58.278 29.630 0.00 0.00 0.00 3.68
322 347 8.257830 TCATTAAATACGTGTCACATAAGCAA 57.742 30.769 0.00 0.00 0.00 3.91
323 348 7.835634 TCATTAAATACGTGTCACATAAGCA 57.164 32.000 0.00 0.00 0.00 3.91
324 349 8.600625 TCTTCATTAAATACGTGTCACATAAGC 58.399 33.333 0.00 0.00 0.00 3.09
326 351 9.863845 TCTCTTCATTAAATACGTGTCACATAA 57.136 29.630 0.00 0.00 0.00 1.90
327 352 9.863845 TTCTCTTCATTAAATACGTGTCACATA 57.136 29.630 0.00 0.00 0.00 2.29
328 353 8.771920 TTCTCTTCATTAAATACGTGTCACAT 57.228 30.769 0.00 0.00 0.00 3.21
329 354 8.596271 TTTCTCTTCATTAAATACGTGTCACA 57.404 30.769 0.00 0.00 0.00 3.58
330 355 8.922676 TCTTTCTCTTCATTAAATACGTGTCAC 58.077 33.333 0.00 0.00 0.00 3.67
331 356 9.653287 ATCTTTCTCTTCATTAAATACGTGTCA 57.347 29.630 0.00 0.00 0.00 3.58
332 357 9.907576 CATCTTTCTCTTCATTAAATACGTGTC 57.092 33.333 0.00 0.00 0.00 3.67
333 358 8.391106 GCATCTTTCTCTTCATTAAATACGTGT 58.609 33.333 0.00 0.00 0.00 4.49
334 359 8.607459 AGCATCTTTCTCTTCATTAAATACGTG 58.393 33.333 0.00 0.00 0.00 4.49
335 360 8.723942 AGCATCTTTCTCTTCATTAAATACGT 57.276 30.769 0.00 0.00 0.00 3.57
336 361 9.430838 CAAGCATCTTTCTCTTCATTAAATACG 57.569 33.333 0.00 0.00 0.00 3.06
339 364 8.248945 CCACAAGCATCTTTCTCTTCATTAAAT 58.751 33.333 0.00 0.00 0.00 1.40
340 365 7.231317 ACCACAAGCATCTTTCTCTTCATTAAA 59.769 33.333 0.00 0.00 0.00 1.52
341 366 6.716628 ACCACAAGCATCTTTCTCTTCATTAA 59.283 34.615 0.00 0.00 0.00 1.40
342 367 6.240894 ACCACAAGCATCTTTCTCTTCATTA 58.759 36.000 0.00 0.00 0.00 1.90
343 368 5.075493 ACCACAAGCATCTTTCTCTTCATT 58.925 37.500 0.00 0.00 0.00 2.57
344 369 4.660168 ACCACAAGCATCTTTCTCTTCAT 58.340 39.130 0.00 0.00 0.00 2.57
345 370 4.090761 ACCACAAGCATCTTTCTCTTCA 57.909 40.909 0.00 0.00 0.00 3.02
346 371 5.703130 AGTTACCACAAGCATCTTTCTCTTC 59.297 40.000 0.00 0.00 0.00 2.87
347 372 5.625150 AGTTACCACAAGCATCTTTCTCTT 58.375 37.500 0.00 0.00 0.00 2.85
348 373 5.234466 AGTTACCACAAGCATCTTTCTCT 57.766 39.130 0.00 0.00 0.00 3.10
349 374 5.064071 GCTAGTTACCACAAGCATCTTTCTC 59.936 44.000 0.00 0.00 35.05 2.87
350 375 4.938226 GCTAGTTACCACAAGCATCTTTCT 59.062 41.667 0.00 0.00 35.05 2.52
351 376 4.938226 AGCTAGTTACCACAAGCATCTTTC 59.062 41.667 0.00 0.00 37.44 2.62
352 377 4.911390 AGCTAGTTACCACAAGCATCTTT 58.089 39.130 0.00 0.00 37.44 2.52
353 378 4.559862 AGCTAGTTACCACAAGCATCTT 57.440 40.909 0.00 0.00 37.44 2.40
354 379 5.187967 ACTTAGCTAGTTACCACAAGCATCT 59.812 40.000 0.00 0.00 37.44 2.90
355 380 5.420409 ACTTAGCTAGTTACCACAAGCATC 58.580 41.667 0.00 0.00 37.44 3.91
356 381 5.422214 ACTTAGCTAGTTACCACAAGCAT 57.578 39.130 0.00 0.00 37.44 3.79
357 382 4.884668 ACTTAGCTAGTTACCACAAGCA 57.115 40.909 0.00 0.00 37.44 3.91
366 391 7.756722 GTGATGTTTCGGTAACTTAGCTAGTTA 59.243 37.037 10.09 10.09 45.22 2.24
368 393 6.098017 GTGATGTTTCGGTAACTTAGCTAGT 58.902 40.000 0.00 0.00 39.32 2.57
369 394 6.097356 TGTGATGTTTCGGTAACTTAGCTAG 58.903 40.000 0.00 0.00 37.64 3.42
370 395 6.028146 TGTGATGTTTCGGTAACTTAGCTA 57.972 37.500 0.00 0.00 37.64 3.32
371 396 4.890088 TGTGATGTTTCGGTAACTTAGCT 58.110 39.130 0.00 0.00 37.64 3.32
372 397 4.927425 TCTGTGATGTTTCGGTAACTTAGC 59.073 41.667 0.00 0.00 37.64 3.09
373 398 6.157211 AGTCTGTGATGTTTCGGTAACTTAG 58.843 40.000 0.00 0.00 37.64 2.18
374 399 6.092955 AGTCTGTGATGTTTCGGTAACTTA 57.907 37.500 0.00 0.00 37.64 2.24
375 400 4.957296 AGTCTGTGATGTTTCGGTAACTT 58.043 39.130 0.00 0.00 37.64 2.66
376 401 4.557205 GAGTCTGTGATGTTTCGGTAACT 58.443 43.478 0.00 0.00 37.64 2.24
377 402 3.678548 GGAGTCTGTGATGTTTCGGTAAC 59.321 47.826 0.00 0.00 37.26 2.50
378 403 3.322541 TGGAGTCTGTGATGTTTCGGTAA 59.677 43.478 0.00 0.00 0.00 2.85
379 404 2.894765 TGGAGTCTGTGATGTTTCGGTA 59.105 45.455 0.00 0.00 0.00 4.02
380 405 1.691976 TGGAGTCTGTGATGTTTCGGT 59.308 47.619 0.00 0.00 0.00 4.69
381 406 2.455674 TGGAGTCTGTGATGTTTCGG 57.544 50.000 0.00 0.00 0.00 4.30
382 407 3.653344 TCTTGGAGTCTGTGATGTTTCG 58.347 45.455 0.00 0.00 0.00 3.46
383 408 5.296780 TGTTTCTTGGAGTCTGTGATGTTTC 59.703 40.000 0.00 0.00 0.00 2.78
384 409 5.192927 TGTTTCTTGGAGTCTGTGATGTTT 58.807 37.500 0.00 0.00 0.00 2.83
385 410 4.780815 TGTTTCTTGGAGTCTGTGATGTT 58.219 39.130 0.00 0.00 0.00 2.71
386 411 4.422073 TGTTTCTTGGAGTCTGTGATGT 57.578 40.909 0.00 0.00 0.00 3.06
387 412 5.471116 TCATTGTTTCTTGGAGTCTGTGATG 59.529 40.000 0.00 0.00 0.00 3.07
388 413 5.624159 TCATTGTTTCTTGGAGTCTGTGAT 58.376 37.500 0.00 0.00 0.00 3.06
389 414 5.034852 TCATTGTTTCTTGGAGTCTGTGA 57.965 39.130 0.00 0.00 0.00 3.58
390 415 4.818546 ACTCATTGTTTCTTGGAGTCTGTG 59.181 41.667 0.00 0.00 33.84 3.66
391 416 5.041191 ACTCATTGTTTCTTGGAGTCTGT 57.959 39.130 0.00 0.00 33.84 3.41
392 417 6.382869 AAACTCATTGTTTCTTGGAGTCTG 57.617 37.500 0.00 0.00 44.81 3.51
393 418 9.793259 TTATAAACTCATTGTTTCTTGGAGTCT 57.207 29.630 0.00 0.00 44.81 3.24
394 419 9.827411 GTTATAAACTCATTGTTTCTTGGAGTC 57.173 33.333 0.00 0.00 44.81 3.36
395 420 8.793592 GGTTATAAACTCATTGTTTCTTGGAGT 58.206 33.333 0.00 0.00 44.81 3.85
396 421 9.014297 AGGTTATAAACTCATTGTTTCTTGGAG 57.986 33.333 0.00 0.00 44.81 3.86
397 422 8.934023 AGGTTATAAACTCATTGTTTCTTGGA 57.066 30.769 0.00 0.00 44.81 3.53
417 442 9.549078 TCATGCAACGATGTATTTATTAGGTTA 57.451 29.630 0.00 0.00 28.42 2.85
418 443 8.342634 GTCATGCAACGATGTATTTATTAGGTT 58.657 33.333 0.00 0.00 28.42 3.50
419 444 7.497579 TGTCATGCAACGATGTATTTATTAGGT 59.502 33.333 0.00 0.00 28.42 3.08
420 445 7.798516 GTGTCATGCAACGATGTATTTATTAGG 59.201 37.037 0.00 0.00 28.42 2.69
421 446 8.551205 AGTGTCATGCAACGATGTATTTATTAG 58.449 33.333 0.00 0.00 28.42 1.73
422 447 8.432110 AGTGTCATGCAACGATGTATTTATTA 57.568 30.769 0.00 0.00 28.42 0.98
423 448 7.320443 AGTGTCATGCAACGATGTATTTATT 57.680 32.000 0.00 0.00 28.42 1.40
424 449 6.925610 AGTGTCATGCAACGATGTATTTAT 57.074 33.333 0.00 0.00 28.42 1.40
425 450 6.814146 TGTAGTGTCATGCAACGATGTATTTA 59.186 34.615 0.00 0.00 28.42 1.40
426 451 5.641636 TGTAGTGTCATGCAACGATGTATTT 59.358 36.000 0.00 0.00 28.42 1.40
427 452 5.175127 TGTAGTGTCATGCAACGATGTATT 58.825 37.500 0.00 0.00 28.42 1.89
428 453 4.754322 TGTAGTGTCATGCAACGATGTAT 58.246 39.130 0.00 0.00 31.41 2.29
429 454 4.181309 TGTAGTGTCATGCAACGATGTA 57.819 40.909 0.00 0.00 0.00 2.29
430 455 3.038788 TGTAGTGTCATGCAACGATGT 57.961 42.857 0.00 0.00 0.00 3.06
431 456 5.043248 TCTATGTAGTGTCATGCAACGATG 58.957 41.667 0.00 0.00 0.00 3.84
432 457 5.262588 TCTATGTAGTGTCATGCAACGAT 57.737 39.130 0.00 0.00 0.00 3.73
433 458 4.712122 TCTATGTAGTGTCATGCAACGA 57.288 40.909 0.00 0.00 0.00 3.85
434 459 4.805719 ACATCTATGTAGTGTCATGCAACG 59.194 41.667 0.00 0.00 39.68 4.10
435 460 6.238211 GGAACATCTATGTAGTGTCATGCAAC 60.238 42.308 0.00 0.00 40.80 4.17
436 461 5.817296 GGAACATCTATGTAGTGTCATGCAA 59.183 40.000 0.00 0.00 40.80 4.08
437 462 5.129320 AGGAACATCTATGTAGTGTCATGCA 59.871 40.000 0.00 0.00 40.80 3.96
438 463 5.605534 AGGAACATCTATGTAGTGTCATGC 58.394 41.667 0.00 0.00 40.80 4.06
439 464 7.148641 GGTAGGAACATCTATGTAGTGTCATG 58.851 42.308 0.00 0.00 40.80 3.07
440 465 6.267928 GGGTAGGAACATCTATGTAGTGTCAT 59.732 42.308 0.00 0.00 40.80 3.06
441 466 5.597182 GGGTAGGAACATCTATGTAGTGTCA 59.403 44.000 0.00 0.00 40.80 3.58
442 467 5.597182 TGGGTAGGAACATCTATGTAGTGTC 59.403 44.000 0.00 0.00 40.80 3.67
443 468 5.363005 GTGGGTAGGAACATCTATGTAGTGT 59.637 44.000 0.00 0.00 40.80 3.55
444 469 5.598830 AGTGGGTAGGAACATCTATGTAGTG 59.401 44.000 0.00 0.00 40.80 2.74
445 470 5.778542 AGTGGGTAGGAACATCTATGTAGT 58.221 41.667 0.00 0.00 40.80 2.73
446 471 7.093727 CCATAGTGGGTAGGAACATCTATGTAG 60.094 44.444 0.00 0.00 35.14 2.74
447 472 6.724441 CCATAGTGGGTAGGAACATCTATGTA 59.276 42.308 0.00 0.00 35.14 2.29
448 473 5.544176 CCATAGTGGGTAGGAACATCTATGT 59.456 44.000 0.00 0.00 36.83 2.29
449 474 5.780282 TCCATAGTGGGTAGGAACATCTATG 59.220 44.000 0.00 0.00 38.32 2.23
450 475 5.977533 TCCATAGTGGGTAGGAACATCTAT 58.022 41.667 0.00 0.00 38.32 1.98
451 476 5.394738 CTCCATAGTGGGTAGGAACATCTA 58.605 45.833 0.00 0.00 38.32 1.98
452 477 4.227197 CTCCATAGTGGGTAGGAACATCT 58.773 47.826 0.00 0.00 38.32 2.90
453 478 3.325135 CCTCCATAGTGGGTAGGAACATC 59.675 52.174 0.00 0.00 38.32 3.06
454 479 3.311402 ACCTCCATAGTGGGTAGGAACAT 60.311 47.826 9.90 0.00 38.32 2.71
455 480 2.045326 ACCTCCATAGTGGGTAGGAACA 59.955 50.000 9.90 0.00 38.32 3.18
456 481 2.760581 ACCTCCATAGTGGGTAGGAAC 58.239 52.381 9.90 0.00 38.32 3.62
457 482 4.194678 CTACCTCCATAGTGGGTAGGAA 57.805 50.000 9.90 0.00 45.09 3.36
458 483 3.897657 CTACCTCCATAGTGGGTAGGA 57.102 52.381 9.90 0.00 45.09 2.94
461 486 9.132185 ACTATATTACTACCTCCATAGTGGGTA 57.868 37.037 0.00 0.00 38.32 3.69
462 487 8.009242 ACTATATTACTACCTCCATAGTGGGT 57.991 38.462 0.00 0.00 38.32 4.51
463 488 8.337739 AGACTATATTACTACCTCCATAGTGGG 58.662 40.741 0.00 0.00 38.32 4.61
468 493 9.809705 TCCCTAGACTATATTACTACCTCCATA 57.190 37.037 0.00 0.00 0.00 2.74
469 494 8.712168 TCCCTAGACTATATTACTACCTCCAT 57.288 38.462 0.00 0.00 0.00 3.41
470 495 8.529952 TTCCCTAGACTATATTACTACCTCCA 57.470 38.462 0.00 0.00 0.00 3.86
471 496 8.613923 ACTTCCCTAGACTATATTACTACCTCC 58.386 40.741 0.00 0.00 0.00 4.30
472 497 9.452287 CACTTCCCTAGACTATATTACTACCTC 57.548 40.741 0.00 0.00 0.00 3.85
473 498 8.957926 ACACTTCCCTAGACTATATTACTACCT 58.042 37.037 0.00 0.00 0.00 3.08
474 499 9.012161 CACACTTCCCTAGACTATATTACTACC 57.988 40.741 0.00 0.00 0.00 3.18
475 500 9.571816 ACACACTTCCCTAGACTATATTACTAC 57.428 37.037 0.00 0.00 0.00 2.73
480 505 9.490083 AACTTACACACTTCCCTAGACTATATT 57.510 33.333 0.00 0.00 0.00 1.28
482 507 9.401058 GTAACTTACACACTTCCCTAGACTATA 57.599 37.037 0.00 0.00 0.00 1.31
483 508 8.114743 AGTAACTTACACACTTCCCTAGACTAT 58.885 37.037 1.79 0.00 0.00 2.12
484 509 7.465116 AGTAACTTACACACTTCCCTAGACTA 58.535 38.462 1.79 0.00 0.00 2.59
485 510 6.313324 AGTAACTTACACACTTCCCTAGACT 58.687 40.000 1.79 0.00 0.00 3.24
486 511 6.587206 AGTAACTTACACACTTCCCTAGAC 57.413 41.667 1.79 0.00 0.00 2.59
487 512 7.465116 ACTAGTAACTTACACACTTCCCTAGA 58.535 38.462 0.00 0.00 0.00 2.43
488 513 7.700022 ACTAGTAACTTACACACTTCCCTAG 57.300 40.000 0.00 0.00 0.00 3.02
489 514 8.482852 AAACTAGTAACTTACACACTTCCCTA 57.517 34.615 0.00 0.00 0.00 3.53
490 515 6.990908 AACTAGTAACTTACACACTTCCCT 57.009 37.500 0.00 0.00 0.00 4.20
491 516 9.148104 CATAAACTAGTAACTTACACACTTCCC 57.852 37.037 0.00 0.00 0.00 3.97
492 517 9.702494 ACATAAACTAGTAACTTACACACTTCC 57.298 33.333 0.00 0.00 0.00 3.46
499 524 9.211485 GGCAAGAACATAAACTAGTAACTTACA 57.789 33.333 0.00 0.00 0.00 2.41
500 525 8.663025 GGGCAAGAACATAAACTAGTAACTTAC 58.337 37.037 0.00 0.00 0.00 2.34
501 526 8.377034 TGGGCAAGAACATAAACTAGTAACTTA 58.623 33.333 0.00 0.00 0.00 2.24
502 527 7.228590 TGGGCAAGAACATAAACTAGTAACTT 58.771 34.615 0.00 0.00 0.00 2.66
503 528 6.775708 TGGGCAAGAACATAAACTAGTAACT 58.224 36.000 0.00 0.00 0.00 2.24
504 529 7.625828 ATGGGCAAGAACATAAACTAGTAAC 57.374 36.000 0.00 0.00 0.00 2.50
505 530 7.668052 ACAATGGGCAAGAACATAAACTAGTAA 59.332 33.333 0.00 0.00 0.00 2.24
506 531 7.120579 CACAATGGGCAAGAACATAAACTAGTA 59.879 37.037 0.00 0.00 0.00 1.82
507 532 6.010219 ACAATGGGCAAGAACATAAACTAGT 58.990 36.000 0.00 0.00 0.00 2.57
508 533 6.150976 TCACAATGGGCAAGAACATAAACTAG 59.849 38.462 0.00 0.00 0.00 2.57
509 534 6.007076 TCACAATGGGCAAGAACATAAACTA 58.993 36.000 0.00 0.00 0.00 2.24
510 535 4.832266 TCACAATGGGCAAGAACATAAACT 59.168 37.500 0.00 0.00 0.00 2.66
511 536 4.923281 GTCACAATGGGCAAGAACATAAAC 59.077 41.667 0.00 0.00 0.00 2.01
512 537 4.021544 GGTCACAATGGGCAAGAACATAAA 60.022 41.667 0.00 0.00 0.00 1.40
513 538 3.509575 GGTCACAATGGGCAAGAACATAA 59.490 43.478 0.00 0.00 0.00 1.90
514 539 3.088532 GGTCACAATGGGCAAGAACATA 58.911 45.455 0.00 0.00 0.00 2.29
515 540 1.895131 GGTCACAATGGGCAAGAACAT 59.105 47.619 0.00 0.00 0.00 2.71
516 541 1.327303 GGTCACAATGGGCAAGAACA 58.673 50.000 0.00 0.00 0.00 3.18
517 542 1.270550 CTGGTCACAATGGGCAAGAAC 59.729 52.381 0.00 0.00 0.00 3.01
518 543 1.619654 CTGGTCACAATGGGCAAGAA 58.380 50.000 0.00 0.00 0.00 2.52
519 544 0.895100 GCTGGTCACAATGGGCAAGA 60.895 55.000 0.00 0.00 0.00 3.02
520 545 1.588082 GCTGGTCACAATGGGCAAG 59.412 57.895 0.00 0.00 0.00 4.01
521 546 1.907807 GGCTGGTCACAATGGGCAA 60.908 57.895 0.00 0.00 0.00 4.52
522 547 1.496444 TAGGCTGGTCACAATGGGCA 61.496 55.000 0.00 0.00 0.00 5.36
523 548 0.323360 TTAGGCTGGTCACAATGGGC 60.323 55.000 0.00 0.00 0.00 5.36
524 549 1.755179 CTTAGGCTGGTCACAATGGG 58.245 55.000 0.00 0.00 0.00 4.00
525 550 1.098050 GCTTAGGCTGGTCACAATGG 58.902 55.000 0.00 0.00 35.22 3.16
526 551 1.741706 CTGCTTAGGCTGGTCACAATG 59.258 52.381 0.00 0.00 39.59 2.82
527 552 1.352352 ACTGCTTAGGCTGGTCACAAT 59.648 47.619 8.55 0.00 40.90 2.71
528 553 0.764890 ACTGCTTAGGCTGGTCACAA 59.235 50.000 8.55 0.00 40.90 3.33
529 554 0.035317 CACTGCTTAGGCTGGTCACA 59.965 55.000 8.55 0.00 40.90 3.58
530 555 0.321671 TCACTGCTTAGGCTGGTCAC 59.678 55.000 8.55 0.00 40.90 3.67
531 556 0.321671 GTCACTGCTTAGGCTGGTCA 59.678 55.000 8.55 0.00 40.90 4.02
532 557 0.391793 GGTCACTGCTTAGGCTGGTC 60.392 60.000 8.55 0.00 40.90 4.02
533 558 1.127567 TGGTCACTGCTTAGGCTGGT 61.128 55.000 8.55 0.00 40.90 4.00
534 559 0.674895 GTGGTCACTGCTTAGGCTGG 60.675 60.000 8.55 0.00 40.90 4.85
535 560 1.016130 CGTGGTCACTGCTTAGGCTG 61.016 60.000 0.00 2.02 42.04 4.85
536 561 1.185618 TCGTGGTCACTGCTTAGGCT 61.186 55.000 0.00 0.00 39.59 4.58
537 562 0.320421 TTCGTGGTCACTGCTTAGGC 60.320 55.000 0.00 0.00 39.26 3.93
538 563 1.798813 GTTTCGTGGTCACTGCTTAGG 59.201 52.381 0.00 0.00 0.00 2.69
539 564 1.455786 CGTTTCGTGGTCACTGCTTAG 59.544 52.381 0.00 0.00 0.00 2.18
540 565 1.067364 TCGTTTCGTGGTCACTGCTTA 59.933 47.619 0.00 0.00 0.00 3.09
541 566 0.179094 TCGTTTCGTGGTCACTGCTT 60.179 50.000 0.00 0.00 0.00 3.91
542 567 0.179094 TTCGTTTCGTGGTCACTGCT 60.179 50.000 0.00 0.00 0.00 4.24
543 568 0.653636 TTTCGTTTCGTGGTCACTGC 59.346 50.000 0.00 0.00 0.00 4.40
544 569 1.661617 TGTTTCGTTTCGTGGTCACTG 59.338 47.619 0.00 0.00 0.00 3.66
545 570 2.012937 TGTTTCGTTTCGTGGTCACT 57.987 45.000 0.00 0.00 0.00 3.41
559 584 8.083462 GGTTTTAACCTTGGAATCAATGTTTC 57.917 34.615 4.39 0.00 45.75 2.78
589 614 1.132640 CAACAGCTAGCGAAACGGC 59.867 57.895 9.55 0.00 0.00 5.68
600 625 4.107051 GGCGCGCAATCAACAGCT 62.107 61.111 34.42 0.00 0.00 4.24
603 628 3.787676 CTCGGCGCGCAATCAACA 61.788 61.111 34.42 6.54 0.00 3.33
614 639 4.389576 GTTGCACCTTGCTCGGCG 62.390 66.667 0.00 0.00 45.31 6.46
615 640 1.639298 CTAGTTGCACCTTGCTCGGC 61.639 60.000 0.00 0.00 45.31 5.54
616 641 1.639298 GCTAGTTGCACCTTGCTCGG 61.639 60.000 10.27 0.00 45.31 4.63
617 642 1.790387 GCTAGTTGCACCTTGCTCG 59.210 57.895 10.27 0.00 45.31 5.03
639 668 4.489771 CCAGACCATGGTCCGGGC 62.490 72.222 36.09 16.21 45.59 6.13
663 692 3.379445 GGCGTCCGTCCCTTCAGA 61.379 66.667 0.00 0.00 0.00 3.27
684 713 0.815615 CGCAGGCCAGGAGGAATTAC 60.816 60.000 5.01 0.00 36.89 1.89
715 744 2.875485 CCAGAGCAGTGCATGTGC 59.125 61.111 19.20 14.51 41.54 4.57
716 745 1.674651 AGCCAGAGCAGTGCATGTG 60.675 57.895 19.20 10.92 43.56 3.21
717 746 1.674651 CAGCCAGAGCAGTGCATGT 60.675 57.895 19.20 0.00 43.56 3.21
718 747 2.407428 CCAGCCAGAGCAGTGCATG 61.407 63.158 19.20 15.14 43.56 4.06
719 748 2.045242 CCAGCCAGAGCAGTGCAT 60.045 61.111 19.20 1.87 43.56 3.96
722 751 3.054503 GTGCCAGCCAGAGCAGTG 61.055 66.667 0.00 0.00 43.56 3.66
723 752 4.341783 GGTGCCAGCCAGAGCAGT 62.342 66.667 0.00 0.00 43.56 4.40
727 756 3.052082 CAACGGTGCCAGCCAGAG 61.052 66.667 0.00 0.00 0.00 3.35
728 757 4.641645 CCAACGGTGCCAGCCAGA 62.642 66.667 0.00 0.00 0.00 3.86
738 767 3.804329 ACTGGTGCACCCAACGGT 61.804 61.111 32.62 19.06 44.65 4.83
739 768 3.286751 CACTGGTGCACCCAACGG 61.287 66.667 32.62 18.45 44.65 4.44
740 769 2.515991 ACACTGGTGCACCCAACG 60.516 61.111 32.62 19.89 44.65 4.10
741 770 2.542907 CGACACTGGTGCACCCAAC 61.543 63.158 32.62 17.37 44.65 3.77
742 771 2.203139 CGACACTGGTGCACCCAA 60.203 61.111 32.62 14.74 44.65 4.12
743 772 4.927782 GCGACACTGGTGCACCCA 62.928 66.667 32.62 19.12 42.51 4.51
746 775 4.927782 TGGGCGACACTGGTGCAC 62.928 66.667 8.80 8.80 0.00 4.57
747 776 4.624364 CTGGGCGACACTGGTGCA 62.624 66.667 0.00 0.00 0.00 4.57
762 791 2.949106 CGAGTGGCAACTTGGCTG 59.051 61.111 15.73 1.00 44.10 4.85
763 792 2.980233 GCGAGTGGCAACTTGGCT 60.980 61.111 15.73 0.00 44.10 4.75
790 819 5.524646 AGTGTAGTGAGCTAGTATTCTCGAC 59.475 44.000 0.00 0.00 32.20 4.20
795 824 5.038033 GCACAGTGTAGTGAGCTAGTATTC 58.962 45.833 1.61 0.00 42.05 1.75
833 872 3.382015 GACTACTTGGTCGACGTAGAC 57.618 52.381 26.04 19.21 40.25 2.59
866 905 2.100631 CAGGCCAGCTAACGAACCG 61.101 63.158 5.01 0.00 0.00 4.44
877 916 2.743126 TTCAGAGCACAGCAGGCCAG 62.743 60.000 5.01 0.00 0.00 4.85
887 926 3.945921 GGTTTTATAGGGGTTCAGAGCAC 59.054 47.826 0.00 0.00 0.00 4.40
908 947 1.450312 GTGTGGAGCGAATGGAGGG 60.450 63.158 0.00 0.00 0.00 4.30
911 950 1.003839 GGTGTGTGGAGCGAATGGA 60.004 57.895 0.00 0.00 0.00 3.41
922 961 3.582120 GGTGTGTGCGGGTGTGTG 61.582 66.667 0.00 0.00 0.00 3.82
923 962 4.868116 GGGTGTGTGCGGGTGTGT 62.868 66.667 0.00 0.00 0.00 3.72
944 983 4.410743 GCTTGGCTTCAGTGGCGC 62.411 66.667 0.00 0.00 35.06 6.53
959 998 4.803908 GGCCGGCTAAGCTTGGCT 62.804 66.667 30.45 0.00 44.70 4.75
1249 1297 4.020617 CTCCAGCAGGGCGTCCAA 62.021 66.667 9.71 0.00 36.21 3.53
1491 1539 1.949133 GCTGCAGTTGACGACGACA 60.949 57.895 16.64 0.00 33.15 4.35
1492 1540 2.846918 GCTGCAGTTGACGACGAC 59.153 61.111 16.64 0.00 0.00 4.34
1549 1597 2.585247 GCGCATCCGGTAGTGGTC 60.585 66.667 0.30 0.00 34.32 4.02
1701 1761 1.819632 CTTGCCGCAGTACCATCCC 60.820 63.158 0.00 0.00 0.00 3.85
1704 1764 1.078426 GTCCTTGCCGCAGTACCAT 60.078 57.895 0.00 0.00 0.00 3.55
1728 1788 0.322975 TGCAGTTGAGGAGGAGCTTC 59.677 55.000 0.00 0.00 0.00 3.86
1965 2037 1.336632 GCAGGATGGAGAGGCTGAGT 61.337 60.000 0.00 0.00 35.86 3.41
2036 2137 2.032681 GCTTGTCCTGCCCTCGTT 59.967 61.111 0.00 0.00 0.00 3.85
2085 2186 2.504681 GCGCGGAAGTTTGGCATG 60.505 61.111 8.83 0.00 0.00 4.06
2107 2208 3.059982 CAGGCAGAAGTGGTCCGA 58.940 61.111 0.00 0.00 0.00 4.55
2200 2301 0.107081 AACCGGTGGAACGTCATCAA 59.893 50.000 8.52 0.00 38.12 2.57
2254 2355 3.480133 GGCCTCCAGGTACGCCAT 61.480 66.667 0.00 0.00 41.25 4.40
2403 2504 1.524621 GATGCACTCCATCCACGGG 60.525 63.158 0.00 0.00 43.72 5.28
2434 2535 5.018539 TCGTACATTTATTCCTCCCACTG 57.981 43.478 0.00 0.00 0.00 3.66
2435 2536 4.960469 TCTCGTACATTTATTCCTCCCACT 59.040 41.667 0.00 0.00 0.00 4.00
2442 2543 5.667466 TCTTGGGTCTCGTACATTTATTCC 58.333 41.667 0.00 0.00 0.00 3.01
2443 2544 5.234543 GCTCTTGGGTCTCGTACATTTATTC 59.765 44.000 0.00 0.00 0.00 1.75
2444 2545 5.116882 GCTCTTGGGTCTCGTACATTTATT 58.883 41.667 0.00 0.00 0.00 1.40
2452 2559 0.175760 GCATGCTCTTGGGTCTCGTA 59.824 55.000 11.37 0.00 0.00 3.43
2454 2561 0.463295 ATGCATGCTCTTGGGTCTCG 60.463 55.000 20.33 0.00 0.00 4.04
2489 2601 2.023181 GCATGCACGCATACGGTG 59.977 61.111 14.21 0.00 46.04 4.94
2490 2602 2.435762 TGCATGCACGCATACGGT 60.436 55.556 18.46 0.00 46.04 4.83
2512 2636 1.430632 GTCGAACATGGCAGCATGG 59.569 57.895 7.70 0.00 36.91 3.66
2513 2637 1.307355 TGGTCGAACATGGCAGCATG 61.307 55.000 0.00 1.82 40.87 4.06
2514 2638 0.394762 ATGGTCGAACATGGCAGCAT 60.395 50.000 16.83 0.00 0.00 3.79
2582 2721 8.314021 GGAAGGAAATATTGGAACTTCACAAAT 58.686 33.333 16.65 0.00 36.85 2.32
2623 2762 6.259608 CCCATTGATCGATGATAGGAAATAGC 59.740 42.308 22.50 0.00 0.00 2.97
2624 2763 7.334090 ACCCATTGATCGATGATAGGAAATAG 58.666 38.462 22.50 3.54 0.00 1.73
2625 2764 7.257790 ACCCATTGATCGATGATAGGAAATA 57.742 36.000 22.50 0.00 0.00 1.40
2626 2765 6.131972 ACCCATTGATCGATGATAGGAAAT 57.868 37.500 22.50 0.00 0.00 2.17
2635 2774 1.066002 GCACCAACCCATTGATCGATG 59.934 52.381 15.16 15.16 38.15 3.84
2643 2782 0.036590 GCATTTGGCACCAACCCATT 59.963 50.000 0.45 0.00 43.97 3.16
2656 2795 5.509716 TCTTCATGGCAATCTAGCATTTG 57.490 39.130 0.00 0.00 35.83 2.32
2657 2796 5.419788 TGTTCTTCATGGCAATCTAGCATTT 59.580 36.000 0.00 0.00 35.83 2.32
2658 2797 4.951715 TGTTCTTCATGGCAATCTAGCATT 59.048 37.500 0.00 0.00 35.83 3.56
2659 2798 4.529897 TGTTCTTCATGGCAATCTAGCAT 58.470 39.130 0.00 0.00 35.83 3.79
2660 2799 3.943381 CTGTTCTTCATGGCAATCTAGCA 59.057 43.478 0.00 0.00 35.83 3.49
2661 2800 3.944015 ACTGTTCTTCATGGCAATCTAGC 59.056 43.478 0.00 0.00 0.00 3.42
2662 2801 6.036517 GTGTACTGTTCTTCATGGCAATCTAG 59.963 42.308 0.00 0.00 0.00 2.43
2663 2802 5.874810 GTGTACTGTTCTTCATGGCAATCTA 59.125 40.000 0.00 0.00 0.00 1.98
2664 2803 4.697352 GTGTACTGTTCTTCATGGCAATCT 59.303 41.667 0.00 0.00 0.00 2.40
2665 2804 4.455533 TGTGTACTGTTCTTCATGGCAATC 59.544 41.667 0.00 0.00 0.00 2.67
2666 2805 4.397420 TGTGTACTGTTCTTCATGGCAAT 58.603 39.130 0.00 0.00 0.00 3.56
2667 2806 3.814625 TGTGTACTGTTCTTCATGGCAA 58.185 40.909 0.00 0.00 0.00 4.52
2668 2807 3.483808 TGTGTACTGTTCTTCATGGCA 57.516 42.857 0.00 0.00 0.00 4.92
2669 2808 5.178797 AGTATGTGTACTGTTCTTCATGGC 58.821 41.667 0.00 0.00 39.66 4.40
2670 2809 8.948631 AATAGTATGTGTACTGTTCTTCATGG 57.051 34.615 0.00 0.00 37.62 3.66
2674 2813 9.453325 GCTCTAATAGTATGTGTACTGTTCTTC 57.547 37.037 0.00 0.00 40.21 2.87
2675 2814 8.967918 TGCTCTAATAGTATGTGTACTGTTCTT 58.032 33.333 0.00 0.00 40.21 2.52
2676 2815 8.521170 TGCTCTAATAGTATGTGTACTGTTCT 57.479 34.615 0.00 0.00 40.21 3.01
2677 2816 9.400638 GATGCTCTAATAGTATGTGTACTGTTC 57.599 37.037 0.00 0.00 40.21 3.18
2678 2817 9.137459 AGATGCTCTAATAGTATGTGTACTGTT 57.863 33.333 0.00 3.66 42.58 3.16
2679 2818 8.698973 AGATGCTCTAATAGTATGTGTACTGT 57.301 34.615 0.00 0.00 41.22 3.55
2680 2819 9.008965 AGAGATGCTCTAATAGTATGTGTACTG 57.991 37.037 0.00 0.00 39.08 2.74
2681 2820 9.226606 GAGAGATGCTCTAATAGTATGTGTACT 57.773 37.037 0.00 0.00 41.35 2.73
2712 2851 2.779430 AGGACCATATGGCATTGACTCA 59.221 45.455 22.18 0.00 39.32 3.41
2810 2961 1.598130 AGAAGCGTTCCACAGGCAC 60.598 57.895 0.00 0.00 38.87 5.01
2811 2962 1.597854 CAGAAGCGTTCCACAGGCA 60.598 57.895 0.00 0.00 38.87 4.75
2812 2963 2.970974 GCAGAAGCGTTCCACAGGC 61.971 63.158 0.00 0.00 36.45 4.85
2813 2964 3.257933 GCAGAAGCGTTCCACAGG 58.742 61.111 0.00 0.00 0.00 4.00
2835 2986 1.296727 GTACCGCCTCATTTACTGGC 58.703 55.000 0.00 0.00 42.94 4.85
2943 4316 4.671569 GCCGAGCTGCGATAGGGG 62.672 72.222 0.00 0.00 44.57 4.79
2963 4336 4.756458 GACGCAGGCAGCTGAGCT 62.756 66.667 20.43 0.00 42.61 4.09
3002 4375 0.028902 CGACGACAGTGTCAGTGTGA 59.971 55.000 22.66 0.00 38.84 3.58
3003 4376 1.540607 GCGACGACAGTGTCAGTGTG 61.541 60.000 22.66 12.11 38.84 3.82
3004 4377 1.299165 GCGACGACAGTGTCAGTGT 60.299 57.895 22.66 13.25 38.84 3.55
3005 4378 2.016704 GGCGACGACAGTGTCAGTG 61.017 63.158 22.66 11.86 38.84 3.66
3006 4379 2.011741 TTGGCGACGACAGTGTCAGT 62.012 55.000 22.66 19.49 38.84 3.41
3050 4423 5.713389 TCAAATGAAATGAATCCTCACTGCT 59.287 36.000 0.00 0.00 33.30 4.24
3093 4466 1.734465 CTCGGCCAAGTTCTTGTGATC 59.266 52.381 2.24 0.00 0.00 2.92
3094 4467 1.813513 CTCGGCCAAGTTCTTGTGAT 58.186 50.000 2.24 0.00 0.00 3.06
3095 4468 0.884704 GCTCGGCCAAGTTCTTGTGA 60.885 55.000 2.24 5.79 0.00 3.58
3096 4469 1.165907 TGCTCGGCCAAGTTCTTGTG 61.166 55.000 2.24 4.78 0.00 3.33
3097 4470 0.465460 TTGCTCGGCCAAGTTCTTGT 60.465 50.000 2.24 0.00 0.00 3.16
3100 4473 0.668535 GTTTTGCTCGGCCAAGTTCT 59.331 50.000 2.24 0.00 0.00 3.01
3124 4497 4.986467 AGGCGCTCCCTAATTTGG 57.014 55.556 7.64 0.00 44.08 3.28
3144 4517 4.041740 TCAGGCACGTGATGAATACTAC 57.958 45.455 22.23 0.00 0.00 2.73
3146 4519 3.610040 TTCAGGCACGTGATGAATACT 57.390 42.857 24.35 7.74 0.00 2.12
3147 4520 4.403453 GTTTTCAGGCACGTGATGAATAC 58.597 43.478 26.96 26.37 33.26 1.89
3217 4590 2.742372 GCCATCTTGACGCGGTGT 60.742 61.111 12.47 0.00 0.00 4.16
3218 4591 2.040213 GATGCCATCTTGACGCGGTG 62.040 60.000 12.47 0.00 0.00 4.94
3219 4592 1.815421 GATGCCATCTTGACGCGGT 60.815 57.895 12.47 0.00 0.00 5.68
3220 4593 2.874694 CGATGCCATCTTGACGCGG 61.875 63.158 12.47 0.00 0.00 6.46
3221 4594 1.815212 CTCGATGCCATCTTGACGCG 61.815 60.000 3.53 3.53 0.00 6.01
3222 4595 1.930100 CTCGATGCCATCTTGACGC 59.070 57.895 2.75 0.00 0.00 5.19
3223 4596 1.930100 GCTCGATGCCATCTTGACG 59.070 57.895 2.75 0.00 35.15 4.35
3235 4608 3.687321 ATTGCAGTGCGGGCTCGAT 62.687 57.895 12.03 0.00 39.00 3.59
3236 4609 3.899981 AATTGCAGTGCGGGCTCGA 62.900 57.895 12.03 0.00 39.00 4.04
3303 4676 3.820467 TGCTTCCGATTTGTGAGAAACAT 59.180 39.130 0.00 0.00 38.99 2.71
3320 4695 1.856265 CTGCTCCCACGGTTTGCTTC 61.856 60.000 0.00 0.00 0.00 3.86
3321 4696 1.898574 CTGCTCCCACGGTTTGCTT 60.899 57.895 0.00 0.00 0.00 3.91
3353 4728 3.829311 AAAGCCACCCCTCTCCCCA 62.829 63.158 0.00 0.00 0.00 4.96
3354 4729 2.941583 AAAGCCACCCCTCTCCCC 60.942 66.667 0.00 0.00 0.00 4.81
3355 4730 2.356667 CAAAGCCACCCCTCTCCC 59.643 66.667 0.00 0.00 0.00 4.30
3356 4731 1.303643 CACAAAGCCACCCCTCTCC 60.304 63.158 0.00 0.00 0.00 3.71
3357 4732 1.303643 CCACAAAGCCACCCCTCTC 60.304 63.158 0.00 0.00 0.00 3.20
3358 4733 1.774217 TCCACAAAGCCACCCCTCT 60.774 57.895 0.00 0.00 0.00 3.69
3359 4734 1.603739 GTCCACAAAGCCACCCCTC 60.604 63.158 0.00 0.00 0.00 4.30
3360 4735 2.520968 GTCCACAAAGCCACCCCT 59.479 61.111 0.00 0.00 0.00 4.79
3361 4736 2.983592 CGTCCACAAAGCCACCCC 60.984 66.667 0.00 0.00 0.00 4.95
3362 4737 2.203294 ACGTCCACAAAGCCACCC 60.203 61.111 0.00 0.00 0.00 4.61
3363 4738 2.258726 GGACGTCCACAAAGCCACC 61.259 63.158 29.75 0.00 35.64 4.61
3364 4739 1.507141 CTGGACGTCCACAAAGCCAC 61.507 60.000 33.23 3.57 42.01 5.01
3365 4740 1.227823 CTGGACGTCCACAAAGCCA 60.228 57.895 33.23 10.75 42.01 4.75
3366 4741 1.070786 TCTGGACGTCCACAAAGCC 59.929 57.895 33.23 5.89 42.01 4.35
3367 4742 1.228657 GGTCTGGACGTCCACAAAGC 61.229 60.000 33.23 24.21 42.01 3.51
3368 4743 0.105964 TGGTCTGGACGTCCACAAAG 59.894 55.000 33.23 22.74 42.01 2.77
3369 4744 0.762418 ATGGTCTGGACGTCCACAAA 59.238 50.000 33.23 18.28 42.01 2.83
3370 4745 0.762418 AATGGTCTGGACGTCCACAA 59.238 50.000 33.23 20.86 42.01 3.33
3371 4746 0.034756 CAATGGTCTGGACGTCCACA 59.965 55.000 33.23 27.91 42.01 4.17
3372 4747 0.034896 ACAATGGTCTGGACGTCCAC 59.965 55.000 33.23 23.46 42.01 4.02
3373 4748 1.634960 TACAATGGTCTGGACGTCCA 58.365 50.000 34.13 34.13 45.30 4.02
3374 4749 2.754946 TTACAATGGTCTGGACGTCC 57.245 50.000 28.17 28.17 0.00 4.79
3375 4750 4.935808 AGATTTTACAATGGTCTGGACGTC 59.064 41.667 7.13 7.13 0.00 4.34
3376 4751 4.906618 AGATTTTACAATGGTCTGGACGT 58.093 39.130 0.00 0.00 0.00 4.34
3377 4752 5.880054 AAGATTTTACAATGGTCTGGACG 57.120 39.130 0.00 0.00 0.00 4.79
3378 4753 7.174946 TGAGAAAGATTTTACAATGGTCTGGAC 59.825 37.037 0.00 0.00 0.00 4.02
3379 4754 7.230747 TGAGAAAGATTTTACAATGGTCTGGA 58.769 34.615 0.00 0.00 0.00 3.86
3380 4755 7.452880 TGAGAAAGATTTTACAATGGTCTGG 57.547 36.000 0.00 0.00 0.00 3.86
3381 4756 8.571336 ACTTGAGAAAGATTTTACAATGGTCTG 58.429 33.333 0.00 0.00 0.00 3.51
3382 4757 8.697507 ACTTGAGAAAGATTTTACAATGGTCT 57.302 30.769 0.00 0.00 0.00 3.85
3404 4779 6.719370 TGGCATGGTAAATCTCAAGTTTACTT 59.281 34.615 0.00 0.00 40.29 2.24
3405 4780 6.245408 TGGCATGGTAAATCTCAAGTTTACT 58.755 36.000 0.00 0.00 40.29 2.24
3406 4781 6.509418 TGGCATGGTAAATCTCAAGTTTAC 57.491 37.500 0.00 0.00 39.91 2.01
3407 4782 6.491745 TGTTGGCATGGTAAATCTCAAGTTTA 59.508 34.615 0.00 0.00 0.00 2.01
3408 4783 5.304101 TGTTGGCATGGTAAATCTCAAGTTT 59.696 36.000 0.00 0.00 0.00 2.66
3409 4784 4.832266 TGTTGGCATGGTAAATCTCAAGTT 59.168 37.500 0.00 0.00 0.00 2.66
3410 4785 4.218417 GTGTTGGCATGGTAAATCTCAAGT 59.782 41.667 0.00 0.00 0.00 3.16
3411 4786 4.380867 GGTGTTGGCATGGTAAATCTCAAG 60.381 45.833 0.00 0.00 0.00 3.02
3412 4787 3.509575 GGTGTTGGCATGGTAAATCTCAA 59.490 43.478 0.00 0.00 0.00 3.02
3413 4788 3.088532 GGTGTTGGCATGGTAAATCTCA 58.911 45.455 0.00 0.00 0.00 3.27
3414 4789 3.088532 TGGTGTTGGCATGGTAAATCTC 58.911 45.455 0.00 0.00 0.00 2.75
3415 4790 3.168035 TGGTGTTGGCATGGTAAATCT 57.832 42.857 0.00 0.00 0.00 2.40
3416 4791 3.446873 TCATGGTGTTGGCATGGTAAATC 59.553 43.478 0.00 0.00 0.00 2.17
3417 4792 3.439154 TCATGGTGTTGGCATGGTAAAT 58.561 40.909 0.00 0.00 0.00 1.40
3418 4793 2.881734 TCATGGTGTTGGCATGGTAAA 58.118 42.857 0.00 0.00 0.00 2.01
3419 4794 2.560542 GTTCATGGTGTTGGCATGGTAA 59.439 45.455 0.00 0.00 0.00 2.85
3420 4795 2.166829 GTTCATGGTGTTGGCATGGTA 58.833 47.619 0.00 0.00 0.00 3.25
3421 4796 0.968405 GTTCATGGTGTTGGCATGGT 59.032 50.000 0.00 0.00 0.00 3.55
3422 4797 0.967662 TGTTCATGGTGTTGGCATGG 59.032 50.000 0.00 0.00 0.00 3.66
3423 4798 1.887854 TCTGTTCATGGTGTTGGCATG 59.112 47.619 0.00 0.00 0.00 4.06
3424 4799 2.291209 TCTGTTCATGGTGTTGGCAT 57.709 45.000 0.00 0.00 0.00 4.40
3425 4800 1.955778 CTTCTGTTCATGGTGTTGGCA 59.044 47.619 0.00 0.00 0.00 4.92
3426 4801 1.956477 ACTTCTGTTCATGGTGTTGGC 59.044 47.619 0.00 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.