Multiple sequence alignment - TraesCS5A01G306500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G306500 chr5A 100.000 2846 0 0 1 2846 516813887 516816732 0.000000e+00 5256.0
1 TraesCS5A01G306500 chr5A 92.019 2105 122 20 1 2096 516665713 516663646 0.000000e+00 2915.0
2 TraesCS5A01G306500 chr5A 88.929 1382 117 21 738 2096 515496344 515494976 0.000000e+00 1672.0
3 TraesCS5A01G306500 chr5A 77.995 768 118 28 1076 1825 519693861 519693127 4.350000e-118 435.0
4 TraesCS5A01G306500 chr5A 85.071 422 47 14 2432 2846 20235623 20235211 1.580000e-112 416.0
5 TraesCS5A01G306500 chr5A 79.483 619 96 21 1266 1862 518412088 518412697 7.340000e-111 411.0
6 TraesCS5A01G306500 chr5A 87.187 359 24 6 2079 2431 516663619 516663277 3.440000e-104 388.0
7 TraesCS5A01G306500 chr5A 83.019 424 55 15 2431 2846 632148749 632148335 4.480000e-98 368.0
8 TraesCS5A01G306500 chr5B 88.727 1721 146 24 738 2431 490359739 490358040 0.000000e+00 2060.0
9 TraesCS5A01G306500 chr5B 90.842 950 81 3 883 1827 490298430 490297482 0.000000e+00 1267.0
10 TraesCS5A01G306500 chr5B 79.551 445 67 11 1354 1780 490232667 490232229 2.140000e-76 296.0
11 TraesCS5A01G306500 chr5B 91.406 128 10 1 750 877 490299317 490299191 1.050000e-39 174.0
12 TraesCS5A01G306500 chr5D 91.315 1209 88 9 874 2077 408742596 408741400 0.000000e+00 1635.0
13 TraesCS5A01G306500 chr5D 87.240 1395 130 30 738 2100 408660041 408658663 0.000000e+00 1546.0
14 TraesCS5A01G306500 chr5D 79.216 765 114 26 1078 1827 408770013 408769279 9.160000e-135 490.0
15 TraesCS5A01G306500 chr5D 83.239 531 74 10 159 685 408743889 408743370 9.230000e-130 473.0
16 TraesCS5A01G306500 chr5D 83.989 356 34 12 2083 2431 408739606 408739267 1.270000e-83 320.0
17 TraesCS5A01G306500 chr5D 93.284 134 9 0 738 871 408742914 408742781 6.220000e-47 198.0
18 TraesCS5A01G306500 chr2A 90.024 421 33 6 2432 2846 738030820 738031237 1.160000e-148 536.0
19 TraesCS5A01G306500 chr2A 84.086 421 56 10 2432 2846 763338107 763338522 2.050000e-106 396.0
20 TraesCS5A01G306500 chr2A 83.649 422 53 14 2432 2846 207350440 207350852 1.600000e-102 383.0
21 TraesCS5A01G306500 chr2A 73.066 349 89 5 338 682 765888943 765889290 4.980000e-23 119.0
22 TraesCS5A01G306500 chr2A 89.831 59 3 3 687 744 87444959 87445015 3.930000e-09 73.1
23 TraesCS5A01G306500 chr3A 89.387 424 30 8 2431 2846 143956773 143956357 1.170000e-143 520.0
24 TraesCS5A01G306500 chr3A 93.617 47 2 1 704 750 700111828 700111783 5.090000e-08 69.4
25 TraesCS5A01G306500 chr2B 90.439 387 29 6 2432 2813 769250035 769249652 1.180000e-138 503.0
26 TraesCS5A01G306500 chr2B 95.652 46 2 0 699 744 375132009 375132054 1.090000e-09 75.0
27 TraesCS5A01G306500 chr3B 88.095 420 42 6 2432 2846 820182015 820182431 2.550000e-135 492.0
28 TraesCS5A01G306500 chr7B 93.115 305 11 4 2432 2732 706454876 706454578 3.370000e-119 438.0
29 TraesCS5A01G306500 chr1A 79.108 426 78 9 1407 1825 2075222 2075643 1.670000e-72 283.0
30 TraesCS5A01G306500 chr1A 77.163 289 60 6 339 624 270138805 270139090 2.270000e-36 163.0
31 TraesCS5A01G306500 chr1A 76.606 218 32 8 470 685 545419324 545419524 5.020000e-18 102.0
32 TraesCS5A01G306500 chr7A 76.487 353 76 6 338 685 143347721 143347371 4.840000e-43 185.0
33 TraesCS5A01G306500 chr6A 76.000 350 79 4 341 685 554781648 554781997 2.910000e-40 176.0
34 TraesCS5A01G306500 chr6A 95.000 40 2 0 643 682 124136834 124136873 2.370000e-06 63.9
35 TraesCS5A01G306500 chrUn 74.713 348 65 13 338 681 79654922 79655250 1.780000e-27 134.0
36 TraesCS5A01G306500 chr6D 75.182 274 62 6 338 607 308931387 308931658 1.070000e-24 124.0
37 TraesCS5A01G306500 chr6B 95.556 45 2 0 700 744 717113765 717113809 3.930000e-09 73.1
38 TraesCS5A01G306500 chr4B 92.308 52 3 1 694 744 607437414 607437465 3.930000e-09 73.1
39 TraesCS5A01G306500 chr3D 95.556 45 2 0 701 745 606005871 606005915 3.930000e-09 73.1
40 TraesCS5A01G306500 chr2D 89.831 59 3 3 687 744 87247199 87247255 3.930000e-09 73.1
41 TraesCS5A01G306500 chr2D 91.837 49 3 1 696 744 42053857 42053810 1.830000e-07 67.6
42 TraesCS5A01G306500 chr1B 93.182 44 3 0 707 750 18112483 18112440 6.580000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G306500 chr5A 516813887 516816732 2845 False 5256.0 5256 100.00000 1 2846 1 chr5A.!!$F1 2845
1 TraesCS5A01G306500 chr5A 515494976 515496344 1368 True 1672.0 1672 88.92900 738 2096 1 chr5A.!!$R2 1358
2 TraesCS5A01G306500 chr5A 516663277 516665713 2436 True 1651.5 2915 89.60300 1 2431 2 chr5A.!!$R5 2430
3 TraesCS5A01G306500 chr5A 519693127 519693861 734 True 435.0 435 77.99500 1076 1825 1 chr5A.!!$R3 749
4 TraesCS5A01G306500 chr5A 518412088 518412697 609 False 411.0 411 79.48300 1266 1862 1 chr5A.!!$F2 596
5 TraesCS5A01G306500 chr5B 490358040 490359739 1699 True 2060.0 2060 88.72700 738 2431 1 chr5B.!!$R2 1693
6 TraesCS5A01G306500 chr5B 490297482 490299317 1835 True 720.5 1267 91.12400 750 1827 2 chr5B.!!$R3 1077
7 TraesCS5A01G306500 chr5D 408658663 408660041 1378 True 1546.0 1546 87.24000 738 2100 1 chr5D.!!$R1 1362
8 TraesCS5A01G306500 chr5D 408739267 408743889 4622 True 656.5 1635 87.95675 159 2431 4 chr5D.!!$R3 2272
9 TraesCS5A01G306500 chr5D 408769279 408770013 734 True 490.0 490 79.21600 1078 1827 1 chr5D.!!$R2 749

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
512 519 0.321298 TTTTAGTCCTCGCAGGTGCC 60.321 55.0 0.0 0.0 36.53 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2503 5756 0.75085 ATTAGGACGTGACCCATCGG 59.249 55.0 0.0 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 90 5.636837 TGTAAATAGCAAATTGGTCGAAGC 58.363 37.500 0.00 0.00 0.00 3.86
92 93 1.317613 AGCAAATTGGTCGAAGCACA 58.682 45.000 0.00 0.00 0.00 4.57
137 139 8.353684 TGTGTCGATACAAAATGGTTATGTTTT 58.646 29.630 13.02 0.00 37.36 2.43
247 249 7.738847 TCATCCTCTACATGCATGATTTTCTA 58.261 34.615 32.75 12.47 0.00 2.10
295 297 9.239002 TGTGTTTTATGTTAAAATTCTTGGTCG 57.761 29.630 0.00 0.00 0.00 4.79
298 300 9.887406 GTTTTATGTTAAAATTCTTGGTCGAGA 57.113 29.630 0.00 0.00 0.00 4.04
349 353 1.348696 GTGGGTCGTTTCCTCCCTAAA 59.651 52.381 0.00 0.00 41.58 1.85
389 393 3.458831 ACTCTCCCATCCAGACTTCAAT 58.541 45.455 0.00 0.00 0.00 2.57
392 396 2.240667 CTCCCATCCAGACTTCAATGGT 59.759 50.000 0.00 0.00 37.54 3.55
408 412 2.264794 GTGAGCCCGTGGATTCGT 59.735 61.111 0.00 0.00 0.00 3.85
414 418 2.355986 CCCGTGGATTCGTCTCCCA 61.356 63.158 4.03 0.00 34.12 4.37
418 422 1.954382 CGTGGATTCGTCTCCCATCTA 59.046 52.381 4.03 0.00 34.12 1.98
420 424 3.756963 CGTGGATTCGTCTCCCATCTATA 59.243 47.826 4.03 0.00 34.12 1.31
429 433 2.906389 TCTCCCATCTATATGCCGCTTT 59.094 45.455 0.00 0.00 0.00 3.51
433 437 2.485426 CCATCTATATGCCGCTTTGGTG 59.515 50.000 0.00 0.00 41.21 4.17
444 449 3.172106 TTTGGTGGCCGGTGGAGA 61.172 61.111 1.90 0.00 0.00 3.71
452 457 2.283809 CCGGTGGAGAGAGGGGAT 59.716 66.667 0.00 0.00 0.00 3.85
458 463 0.338467 TGGAGAGAGGGGATTTCCGA 59.662 55.000 0.00 0.00 36.71 4.55
512 519 0.321298 TTTTAGTCCTCGCAGGTGCC 60.321 55.000 0.00 0.00 36.53 5.01
570 577 0.914417 TCCTTCGGGCTCCAATCCTT 60.914 55.000 0.00 0.00 34.44 3.36
576 583 0.541863 GGGCTCCAATCCTTCTCGAA 59.458 55.000 0.00 0.00 0.00 3.71
579 586 2.875317 GGCTCCAATCCTTCTCGAATTC 59.125 50.000 0.00 0.00 0.00 2.17
612 619 1.068748 GTAGTCGACGAAGCTCCAACA 60.069 52.381 10.46 0.00 0.00 3.33
615 622 2.159366 AGTCGACGAAGCTCCAACATAG 60.159 50.000 10.46 0.00 0.00 2.23
620 627 4.688021 GACGAAGCTCCAACATAGATTCT 58.312 43.478 0.00 0.00 37.25 2.40
624 631 5.220548 CGAAGCTCCAACATAGATTCTTGTG 60.221 44.000 0.00 0.00 37.25 3.33
626 633 3.065925 GCTCCAACATAGATTCTTGTGGC 59.934 47.826 0.00 0.00 0.00 5.01
634 641 5.191722 ACATAGATTCTTGTGGCCTCCTTAA 59.808 40.000 3.32 0.00 0.00 1.85
635 642 4.657814 AGATTCTTGTGGCCTCCTTAAA 57.342 40.909 3.32 0.00 0.00 1.52
641 648 2.189676 TGTGGCCTCCTTAAACCGATA 58.810 47.619 3.32 0.00 0.00 2.92
704 1138 5.046520 AGGTGGTGAGGTTTAGTGACTAATC 60.047 44.000 5.81 5.42 0.00 1.75
705 1139 5.046520 GGTGGTGAGGTTTAGTGACTAATCT 60.047 44.000 5.81 7.10 0.00 2.40
706 1140 6.100668 GTGGTGAGGTTTAGTGACTAATCTC 58.899 44.000 20.00 20.00 32.53 2.75
708 1142 6.153000 TGGTGAGGTTTAGTGACTAATCTCTC 59.847 42.308 23.73 21.29 32.81 3.20
709 1143 6.406065 GGTGAGGTTTAGTGACTAATCTCTCC 60.406 46.154 24.43 24.43 35.66 3.71
712 1146 5.357596 AGGTTTAGTGACTAATCTCTCCGTC 59.642 44.000 5.81 0.00 31.23 4.79
713 1147 5.450274 GGTTTAGTGACTAATCTCTCCGTCC 60.450 48.000 5.81 0.00 31.23 4.79
714 1148 2.657143 AGTGACTAATCTCTCCGTCCC 58.343 52.381 0.00 0.00 0.00 4.46
715 1149 2.025226 AGTGACTAATCTCTCCGTCCCA 60.025 50.000 0.00 0.00 0.00 4.37
716 1150 2.959707 GTGACTAATCTCTCCGTCCCAT 59.040 50.000 0.00 0.00 0.00 4.00
717 1151 4.141228 AGTGACTAATCTCTCCGTCCCATA 60.141 45.833 0.00 0.00 0.00 2.74
718 1152 4.583489 GTGACTAATCTCTCCGTCCCATAA 59.417 45.833 0.00 0.00 0.00 1.90
719 1153 5.244178 GTGACTAATCTCTCCGTCCCATAAT 59.756 44.000 0.00 0.00 0.00 1.28
720 1154 6.433404 GTGACTAATCTCTCCGTCCCATAATA 59.567 42.308 0.00 0.00 0.00 0.98
721 1155 7.122948 GTGACTAATCTCTCCGTCCCATAATAT 59.877 40.741 0.00 0.00 0.00 1.28
722 1156 8.333984 TGACTAATCTCTCCGTCCCATAATATA 58.666 37.037 0.00 0.00 0.00 0.86
723 1157 9.186837 GACTAATCTCTCCGTCCCATAATATAA 57.813 37.037 0.00 0.00 0.00 0.98
724 1158 9.191479 ACTAATCTCTCCGTCCCATAATATAAG 57.809 37.037 0.00 0.00 0.00 1.73
725 1159 9.409918 CTAATCTCTCCGTCCCATAATATAAGA 57.590 37.037 0.00 0.00 0.00 2.10
726 1160 8.846423 AATCTCTCCGTCCCATAATATAAGAT 57.154 34.615 0.00 0.00 0.00 2.40
727 1161 7.646548 TCTCTCCGTCCCATAATATAAGATG 57.353 40.000 0.00 0.00 0.00 2.90
728 1162 7.182760 TCTCTCCGTCCCATAATATAAGATGT 58.817 38.462 0.00 0.00 0.00 3.06
729 1163 7.674348 TCTCTCCGTCCCATAATATAAGATGTT 59.326 37.037 0.00 0.00 0.00 2.71
730 1164 8.202461 TCTCCGTCCCATAATATAAGATGTTT 57.798 34.615 0.00 0.00 0.00 2.83
731 1165 8.656806 TCTCCGTCCCATAATATAAGATGTTTT 58.343 33.333 0.00 0.00 0.00 2.43
732 1166 9.284968 CTCCGTCCCATAATATAAGATGTTTTT 57.715 33.333 0.00 0.00 0.00 1.94
781 1215 8.331931 ACCTAATTGTCATCTATTGGTTCCTA 57.668 34.615 0.00 0.00 0.00 2.94
797 1231 2.832838 TCCTACAAGATCTCAAGCCCA 58.167 47.619 0.00 0.00 0.00 5.36
806 1240 3.933048 CTCAAGCCCAGGCCCACAG 62.933 68.421 4.70 0.00 43.17 3.66
864 1298 2.338500 GACAGAGACCATTTCCGTGAC 58.662 52.381 0.00 0.00 0.00 3.67
919 2290 4.141688 TGTGCCACCGGTATAAATACATGA 60.142 41.667 6.87 0.00 34.98 3.07
978 2358 2.437343 GCGAGTTCAAGGAGCGACG 61.437 63.158 0.00 0.00 0.00 5.12
1040 2420 1.544825 CCGTGCTCCTCCTTCTTCCA 61.545 60.000 0.00 0.00 0.00 3.53
1885 3290 3.491104 CCCCTAAGTTATCTCGTGAGCAC 60.491 52.174 0.00 0.00 0.00 4.40
2011 3458 5.819991 ACCCATTGTGAATAGTGATCAGTT 58.180 37.500 8.68 0.00 0.00 3.16
2066 3517 6.103330 TGAGTATATGTATGCACGTGTGTTT 58.897 36.000 18.38 2.28 0.00 2.83
2172 5418 2.100916 GGTGTATCTTGCGCTCCTAGAA 59.899 50.000 9.73 0.00 0.00 2.10
2213 5459 5.694674 GTTCAAGAGAACGAGCTTATCAG 57.305 43.478 0.00 0.00 44.11 2.90
2214 5460 4.032331 GTTCAAGAGAACGAGCTTATCAGC 59.968 45.833 0.00 0.00 44.11 4.26
2233 5479 7.627298 ATCAGCTTATGATCAATCTAATGGC 57.373 36.000 0.00 0.00 46.01 4.40
2251 5497 9.560860 TCTAATGGCCTCTCTATAATCCAATAA 57.439 33.333 3.32 0.00 0.00 1.40
2304 5556 3.074675 CTAGGGGCTAGCTCTTCGATA 57.925 52.381 15.73 0.00 0.00 2.92
2313 5565 4.153475 GCTAGCTCTTCGATACAGGTAGAG 59.847 50.000 20.70 13.72 39.57 2.43
2343 5595 1.946984 ACGATTGAAGTGGGGGAGTA 58.053 50.000 0.00 0.00 0.00 2.59
2378 5630 4.502962 AGGATTTCTCGCTTCTTTCTCTG 58.497 43.478 0.00 0.00 0.00 3.35
2393 5645 5.942236 TCTTTCTCTGATGCAAAACTATGCT 59.058 36.000 0.00 0.00 46.54 3.79
2409 5661 8.571461 AAACTATGCTTGAATCTTTCATCTCA 57.429 30.769 0.00 0.00 39.84 3.27
2411 5663 4.934075 TGCTTGAATCTTTCATCTCACG 57.066 40.909 0.00 0.00 39.84 4.35
2431 5684 2.479730 CGCGCTCCTAAGTGATACAAGT 60.480 50.000 5.56 0.00 34.83 3.16
2432 5685 2.860735 GCGCTCCTAAGTGATACAAGTG 59.139 50.000 0.00 0.00 34.83 3.16
2433 5686 3.676324 GCGCTCCTAAGTGATACAAGTGT 60.676 47.826 0.00 0.00 34.83 3.55
2434 5687 4.495422 CGCTCCTAAGTGATACAAGTGTT 58.505 43.478 0.00 0.00 34.83 3.32
2435 5688 5.647589 CGCTCCTAAGTGATACAAGTGTTA 58.352 41.667 0.00 0.00 34.83 2.41
2436 5689 6.097356 CGCTCCTAAGTGATACAAGTGTTAA 58.903 40.000 0.00 0.00 34.83 2.01
2437 5690 6.253727 CGCTCCTAAGTGATACAAGTGTTAAG 59.746 42.308 0.00 0.00 34.83 1.85
2438 5691 7.321153 GCTCCTAAGTGATACAAGTGTTAAGA 58.679 38.462 0.00 0.00 0.00 2.10
2439 5692 7.982354 GCTCCTAAGTGATACAAGTGTTAAGAT 59.018 37.037 0.00 0.00 0.00 2.40
2440 5693 9.877178 CTCCTAAGTGATACAAGTGTTAAGATT 57.123 33.333 0.00 0.00 0.00 2.40
2482 5735 4.569719 AGGGAAATCCTAGCTTTTCGAA 57.430 40.909 0.00 0.00 45.98 3.71
2483 5736 4.918588 AGGGAAATCCTAGCTTTTCGAAA 58.081 39.130 6.47 6.47 45.98 3.46
2484 5737 4.700692 AGGGAAATCCTAGCTTTTCGAAAC 59.299 41.667 10.79 0.00 45.98 2.78
2485 5738 4.142447 GGGAAATCCTAGCTTTTCGAAACC 60.142 45.833 10.79 4.86 33.58 3.27
2486 5739 4.436986 GGAAATCCTAGCTTTTCGAAACCG 60.437 45.833 10.79 6.06 33.58 4.44
2487 5740 3.604875 ATCCTAGCTTTTCGAAACCGA 57.395 42.857 10.79 0.47 0.00 4.69
2488 5741 3.604875 TCCTAGCTTTTCGAAACCGAT 57.395 42.857 10.79 6.24 35.82 4.18
2489 5742 3.259064 TCCTAGCTTTTCGAAACCGATG 58.741 45.455 10.79 1.53 35.82 3.84
2490 5743 3.000727 CCTAGCTTTTCGAAACCGATGT 58.999 45.455 10.79 0.00 35.82 3.06
2491 5744 2.969443 AGCTTTTCGAAACCGATGTG 57.031 45.000 10.79 0.00 35.82 3.21
2492 5745 1.069227 AGCTTTTCGAAACCGATGTGC 60.069 47.619 10.79 6.66 35.82 4.57
2493 5746 1.591248 CTTTTCGAAACCGATGTGCG 58.409 50.000 10.79 0.00 35.82 5.34
2502 5755 3.486263 CGATGTGCGGTTTCTCCC 58.514 61.111 0.00 0.00 36.03 4.30
2503 5756 2.106683 CGATGTGCGGTTTCTCCCC 61.107 63.158 0.00 0.00 36.03 4.81
2504 5757 1.749258 GATGTGCGGTTTCTCCCCC 60.749 63.158 0.00 0.00 0.00 5.40
2505 5758 3.622060 ATGTGCGGTTTCTCCCCCG 62.622 63.158 0.00 0.00 46.90 5.73
2519 5772 3.075005 CCCGATGGGTCACGTCCT 61.075 66.667 0.00 0.00 38.25 3.85
2520 5773 1.755395 CCCGATGGGTCACGTCCTA 60.755 63.158 0.00 0.00 38.25 2.94
2521 5774 1.324740 CCCGATGGGTCACGTCCTAA 61.325 60.000 0.00 0.00 38.25 2.69
2522 5775 0.750850 CCGATGGGTCACGTCCTAAT 59.249 55.000 0.00 0.00 0.00 1.73
2523 5776 1.538204 CCGATGGGTCACGTCCTAATG 60.538 57.143 0.00 0.00 0.00 1.90
2524 5777 1.136305 CGATGGGTCACGTCCTAATGT 59.864 52.381 0.00 0.00 0.00 2.71
2525 5778 2.359848 CGATGGGTCACGTCCTAATGTA 59.640 50.000 0.00 0.00 0.00 2.29
2526 5779 3.181484 CGATGGGTCACGTCCTAATGTAA 60.181 47.826 0.00 0.00 0.00 2.41
2527 5780 3.598019 TGGGTCACGTCCTAATGTAAC 57.402 47.619 0.00 0.00 0.00 2.50
2528 5781 2.094597 TGGGTCACGTCCTAATGTAACG 60.095 50.000 0.00 0.00 41.93 3.18
2529 5782 2.533266 GGTCACGTCCTAATGTAACGG 58.467 52.381 0.00 0.00 40.58 4.44
2530 5783 2.164219 GGTCACGTCCTAATGTAACGGA 59.836 50.000 0.00 0.00 40.58 4.69
2531 5784 3.174375 GTCACGTCCTAATGTAACGGAC 58.826 50.000 0.00 0.00 42.90 4.79
2534 5787 1.194495 GTCCTAATGTAACGGACGCG 58.806 55.000 3.53 3.53 38.00 6.01
2535 5788 0.810648 TCCTAATGTAACGGACGCGT 59.189 50.000 13.85 13.85 0.00 6.01
2536 5789 1.194495 CCTAATGTAACGGACGCGTC 58.806 55.000 30.67 30.67 0.00 5.19
2537 5790 1.194495 CTAATGTAACGGACGCGTCC 58.806 55.000 41.75 41.75 46.18 4.79
2547 5800 2.580966 GGACGCGTCCTTCTAATCTT 57.419 50.000 43.32 3.50 46.16 2.40
2548 5801 2.194271 GGACGCGTCCTTCTAATCTTG 58.806 52.381 43.32 0.00 46.16 3.02
2549 5802 1.588861 GACGCGTCCTTCTAATCTTGC 59.411 52.381 28.61 0.00 0.00 4.01
2550 5803 0.931005 CGCGTCCTTCTAATCTTGCC 59.069 55.000 0.00 0.00 0.00 4.52
2551 5804 1.471676 CGCGTCCTTCTAATCTTGCCT 60.472 52.381 0.00 0.00 0.00 4.75
2552 5805 2.205911 GCGTCCTTCTAATCTTGCCTC 58.794 52.381 0.00 0.00 0.00 4.70
2553 5806 2.159028 GCGTCCTTCTAATCTTGCCTCT 60.159 50.000 0.00 0.00 0.00 3.69
2554 5807 3.680196 GCGTCCTTCTAATCTTGCCTCTT 60.680 47.826 0.00 0.00 0.00 2.85
2555 5808 3.868077 CGTCCTTCTAATCTTGCCTCTTG 59.132 47.826 0.00 0.00 0.00 3.02
2556 5809 4.621747 CGTCCTTCTAATCTTGCCTCTTGT 60.622 45.833 0.00 0.00 0.00 3.16
2557 5810 5.394224 CGTCCTTCTAATCTTGCCTCTTGTA 60.394 44.000 0.00 0.00 0.00 2.41
2558 5811 6.407202 GTCCTTCTAATCTTGCCTCTTGTAA 58.593 40.000 0.00 0.00 0.00 2.41
2559 5812 6.536941 GTCCTTCTAATCTTGCCTCTTGTAAG 59.463 42.308 0.00 0.00 37.96 2.34
2560 5813 5.295540 CCTTCTAATCTTGCCTCTTGTAAGC 59.704 44.000 0.00 0.00 36.69 3.09
2561 5814 4.433615 TCTAATCTTGCCTCTTGTAAGCG 58.566 43.478 0.00 0.00 36.69 4.68
2562 5815 2.770164 ATCTTGCCTCTTGTAAGCGT 57.230 45.000 0.00 0.00 36.69 5.07
2563 5816 2.080286 TCTTGCCTCTTGTAAGCGTC 57.920 50.000 0.00 0.00 36.69 5.19
2564 5817 0.716108 CTTGCCTCTTGTAAGCGTCG 59.284 55.000 0.00 0.00 29.66 5.12
2565 5818 1.289109 TTGCCTCTTGTAAGCGTCGC 61.289 55.000 9.80 9.80 0.00 5.19
2566 5819 2.789203 GCCTCTTGTAAGCGTCGCG 61.789 63.158 12.30 0.00 0.00 5.87
2567 5820 1.154093 CCTCTTGTAAGCGTCGCGA 60.154 57.895 12.30 3.71 0.00 5.87
2568 5821 1.403972 CCTCTTGTAAGCGTCGCGAC 61.404 60.000 28.96 28.96 0.00 5.19
2569 5822 0.454620 CTCTTGTAAGCGTCGCGACT 60.455 55.000 33.94 19.95 0.00 4.18
2570 5823 0.728129 TCTTGTAAGCGTCGCGACTG 60.728 55.000 33.94 27.01 0.00 3.51
2571 5824 1.002250 CTTGTAAGCGTCGCGACTGT 61.002 55.000 33.94 21.52 0.00 3.55
2572 5825 1.272784 TTGTAAGCGTCGCGACTGTG 61.273 55.000 33.94 21.13 0.00 3.66
2573 5826 2.803670 TAAGCGTCGCGACTGTGC 60.804 61.111 33.94 28.79 0.00 4.57
2581 5834 3.753539 GCGACTGTGCGACGTGTC 61.754 66.667 0.00 0.00 33.39 3.67
2582 5835 3.097728 CGACTGTGCGACGTGTCC 61.098 66.667 0.00 0.00 0.00 4.02
2583 5836 2.733593 GACTGTGCGACGTGTCCC 60.734 66.667 0.00 0.00 0.00 4.46
2584 5837 4.295119 ACTGTGCGACGTGTCCCC 62.295 66.667 0.00 0.00 0.00 4.81
2585 5838 3.991051 CTGTGCGACGTGTCCCCT 61.991 66.667 0.00 0.00 0.00 4.79
2586 5839 3.916392 CTGTGCGACGTGTCCCCTC 62.916 68.421 0.00 0.00 0.00 4.30
2587 5840 4.736896 GTGCGACGTGTCCCCTCC 62.737 72.222 0.00 0.00 0.00 4.30
2602 5855 5.950544 TCCCCTCCGGACATATAAATATG 57.049 43.478 0.00 8.16 44.37 1.78
2626 5879 8.255394 TGTACATCATTACAGTCAATCAAGTG 57.745 34.615 0.00 0.00 0.00 3.16
2627 5880 8.093927 TGTACATCATTACAGTCAATCAAGTGA 58.906 33.333 0.00 0.00 0.00 3.41
2628 5881 7.606858 ACATCATTACAGTCAATCAAGTGAG 57.393 36.000 0.00 0.00 0.00 3.51
2629 5882 7.389232 ACATCATTACAGTCAATCAAGTGAGA 58.611 34.615 0.00 0.00 0.00 3.27
2630 5883 8.045507 ACATCATTACAGTCAATCAAGTGAGAT 58.954 33.333 0.00 0.00 0.00 2.75
2631 5884 8.549548 CATCATTACAGTCAATCAAGTGAGATC 58.450 37.037 0.00 0.00 0.00 2.75
2632 5885 7.614494 TCATTACAGTCAATCAAGTGAGATCA 58.386 34.615 0.00 0.00 0.00 2.92
2633 5886 8.262933 TCATTACAGTCAATCAAGTGAGATCAT 58.737 33.333 0.00 0.00 0.00 2.45
2634 5887 8.890718 CATTACAGTCAATCAAGTGAGATCATT 58.109 33.333 0.00 0.00 0.00 2.57
2635 5888 8.853077 TTACAGTCAATCAAGTGAGATCATTT 57.147 30.769 0.00 0.00 0.00 2.32
2636 5889 7.756395 ACAGTCAATCAAGTGAGATCATTTT 57.244 32.000 0.00 0.00 0.00 1.82
2637 5890 8.853077 ACAGTCAATCAAGTGAGATCATTTTA 57.147 30.769 0.00 0.00 0.00 1.52
2638 5891 8.725148 ACAGTCAATCAAGTGAGATCATTTTAC 58.275 33.333 0.00 0.00 0.00 2.01
2639 5892 8.944029 CAGTCAATCAAGTGAGATCATTTTACT 58.056 33.333 0.00 0.00 0.00 2.24
2640 5893 8.944029 AGTCAATCAAGTGAGATCATTTTACTG 58.056 33.333 0.00 0.00 0.00 2.74
2641 5894 8.725148 GTCAATCAAGTGAGATCATTTTACTGT 58.275 33.333 0.00 0.00 0.00 3.55
2642 5895 9.288576 TCAATCAAGTGAGATCATTTTACTGTT 57.711 29.630 0.00 0.00 0.00 3.16
2643 5896 9.552114 CAATCAAGTGAGATCATTTTACTGTTC 57.448 33.333 0.00 0.00 0.00 3.18
2644 5897 8.853077 ATCAAGTGAGATCATTTTACTGTTCA 57.147 30.769 0.00 0.00 0.00 3.18
2645 5898 8.087982 TCAAGTGAGATCATTTTACTGTTCAC 57.912 34.615 0.00 0.00 35.22 3.18
2646 5899 6.712241 AGTGAGATCATTTTACTGTTCACG 57.288 37.500 0.00 0.00 38.85 4.35
2647 5900 5.120830 AGTGAGATCATTTTACTGTTCACGC 59.879 40.000 0.00 0.00 38.85 5.34
2648 5901 4.994217 TGAGATCATTTTACTGTTCACGCA 59.006 37.500 0.00 0.00 0.00 5.24
2649 5902 5.107104 TGAGATCATTTTACTGTTCACGCAC 60.107 40.000 0.00 0.00 0.00 5.34
2650 5903 4.754618 AGATCATTTTACTGTTCACGCACA 59.245 37.500 0.00 0.00 0.00 4.57
2658 5911 3.405170 CTGTTCACGCACAGTTTCTTT 57.595 42.857 2.54 0.00 39.59 2.52
2659 5912 4.530094 CTGTTCACGCACAGTTTCTTTA 57.470 40.909 2.54 0.00 39.59 1.85
2660 5913 4.267357 TGTTCACGCACAGTTTCTTTAC 57.733 40.909 0.00 0.00 0.00 2.01
2661 5914 3.685272 TGTTCACGCACAGTTTCTTTACA 59.315 39.130 0.00 0.00 0.00 2.41
2662 5915 3.936902 TCACGCACAGTTTCTTTACAC 57.063 42.857 0.00 0.00 0.00 2.90
2663 5916 2.283086 TCACGCACAGTTTCTTTACACG 59.717 45.455 0.00 0.00 0.00 4.49
2664 5917 2.029970 CACGCACAGTTTCTTTACACGT 59.970 45.455 0.00 0.00 0.00 4.49
2665 5918 2.674357 ACGCACAGTTTCTTTACACGTT 59.326 40.909 0.00 0.00 0.00 3.99
2666 5919 3.026349 CGCACAGTTTCTTTACACGTTG 58.974 45.455 0.00 0.00 0.00 4.10
2667 5920 3.484557 CGCACAGTTTCTTTACACGTTGT 60.485 43.478 0.00 0.00 0.00 3.32
2668 5921 4.026407 GCACAGTTTCTTTACACGTTGTC 58.974 43.478 0.00 0.00 0.00 3.18
2669 5922 4.436317 GCACAGTTTCTTTACACGTTGTCA 60.436 41.667 0.00 0.00 0.00 3.58
2670 5923 5.019498 CACAGTTTCTTTACACGTTGTCAC 58.981 41.667 0.00 0.00 0.00 3.67
2680 5933 2.886859 CGTTGTCACGCACTTCTCT 58.113 52.632 0.00 0.00 40.18 3.10
2681 5934 0.778815 CGTTGTCACGCACTTCTCTC 59.221 55.000 0.00 0.00 40.18 3.20
2682 5935 1.140816 GTTGTCACGCACTTCTCTCC 58.859 55.000 0.00 0.00 0.00 3.71
2683 5936 0.750249 TTGTCACGCACTTCTCTCCA 59.250 50.000 0.00 0.00 0.00 3.86
2684 5937 0.315251 TGTCACGCACTTCTCTCCAG 59.685 55.000 0.00 0.00 0.00 3.86
2685 5938 1.011451 GTCACGCACTTCTCTCCAGC 61.011 60.000 0.00 0.00 0.00 4.85
2688 5941 4.492955 GCACTTCTCTCCAGCGAG 57.507 61.111 0.00 0.00 37.48 5.03
2689 5942 1.886585 GCACTTCTCTCCAGCGAGA 59.113 57.895 0.00 0.00 43.08 4.04
2708 5961 2.664851 CGACAAGGCCGCACAAGA 60.665 61.111 0.00 0.00 0.00 3.02
2709 5962 2.250939 CGACAAGGCCGCACAAGAA 61.251 57.895 0.00 0.00 0.00 2.52
2710 5963 1.282875 GACAAGGCCGCACAAGAAC 59.717 57.895 0.00 0.00 0.00 3.01
2711 5964 1.152963 ACAAGGCCGCACAAGAACT 60.153 52.632 0.00 0.00 0.00 3.01
2712 5965 1.166531 ACAAGGCCGCACAAGAACTC 61.167 55.000 0.00 0.00 0.00 3.01
2713 5966 1.961277 AAGGCCGCACAAGAACTCG 60.961 57.895 0.00 0.00 0.00 4.18
2714 5967 2.660258 AAGGCCGCACAAGAACTCGT 62.660 55.000 0.00 0.00 0.00 4.18
2715 5968 2.668280 GGCCGCACAAGAACTCGTC 61.668 63.158 0.00 0.00 0.00 4.20
2716 5969 3.000080 GCCGCACAAGAACTCGTCG 62.000 63.158 0.00 0.00 0.00 5.12
2717 5970 2.372690 CCGCACAAGAACTCGTCGG 61.373 63.158 0.00 0.00 0.00 4.79
2718 5971 1.371267 CGCACAAGAACTCGTCGGA 60.371 57.895 0.00 0.00 0.00 4.55
2719 5972 1.337817 CGCACAAGAACTCGTCGGAG 61.338 60.000 0.00 0.00 46.13 4.63
2720 5973 0.039437 GCACAAGAACTCGTCGGAGA 60.039 55.000 0.00 0.00 43.27 3.71
2721 5974 1.602165 GCACAAGAACTCGTCGGAGAA 60.602 52.381 0.00 0.00 43.27 2.87
2722 5975 2.739292 CACAAGAACTCGTCGGAGAAA 58.261 47.619 0.00 0.00 43.27 2.52
2723 5976 3.120792 CACAAGAACTCGTCGGAGAAAA 58.879 45.455 0.00 0.00 43.27 2.29
2724 5977 3.554324 CACAAGAACTCGTCGGAGAAAAA 59.446 43.478 0.00 0.00 43.27 1.94
2725 5978 4.211374 CACAAGAACTCGTCGGAGAAAAAT 59.789 41.667 0.00 0.00 43.27 1.82
2726 5979 4.448060 ACAAGAACTCGTCGGAGAAAAATC 59.552 41.667 0.00 0.00 43.27 2.17
2727 5980 4.522722 AGAACTCGTCGGAGAAAAATCT 57.477 40.909 0.00 0.00 43.27 2.40
2728 5981 4.238514 AGAACTCGTCGGAGAAAAATCTG 58.761 43.478 0.00 0.00 43.27 2.90
2729 5982 2.960819 ACTCGTCGGAGAAAAATCTGG 58.039 47.619 0.00 0.00 43.27 3.86
2730 5983 2.561419 ACTCGTCGGAGAAAAATCTGGA 59.439 45.455 0.00 0.00 43.27 3.86
2731 5984 3.006537 ACTCGTCGGAGAAAAATCTGGAA 59.993 43.478 0.00 0.00 43.27 3.53
2732 5985 4.184629 CTCGTCGGAGAAAAATCTGGAAT 58.815 43.478 0.00 0.00 43.27 3.01
2733 5986 3.932710 TCGTCGGAGAAAAATCTGGAATG 59.067 43.478 0.00 0.00 39.69 2.67
2734 5987 3.063997 CGTCGGAGAAAAATCTGGAATGG 59.936 47.826 0.00 0.00 39.69 3.16
2735 5988 4.010349 GTCGGAGAAAAATCTGGAATGGT 58.990 43.478 0.00 0.00 39.69 3.55
2736 5989 4.009675 TCGGAGAAAAATCTGGAATGGTG 58.990 43.478 0.00 0.00 0.00 4.17
2737 5990 4.009675 CGGAGAAAAATCTGGAATGGTGA 58.990 43.478 0.00 0.00 0.00 4.02
2738 5991 4.095483 CGGAGAAAAATCTGGAATGGTGAG 59.905 45.833 0.00 0.00 0.00 3.51
2739 5992 4.400567 GGAGAAAAATCTGGAATGGTGAGG 59.599 45.833 0.00 0.00 0.00 3.86
2740 5993 5.256474 GAGAAAAATCTGGAATGGTGAGGA 58.744 41.667 0.00 0.00 0.00 3.71
2741 5994 5.835582 AGAAAAATCTGGAATGGTGAGGAT 58.164 37.500 0.00 0.00 0.00 3.24
2742 5995 5.655532 AGAAAAATCTGGAATGGTGAGGATG 59.344 40.000 0.00 0.00 0.00 3.51
2743 5996 2.653234 ATCTGGAATGGTGAGGATGC 57.347 50.000 0.00 0.00 0.00 3.91
2744 5997 0.548031 TCTGGAATGGTGAGGATGCC 59.452 55.000 0.00 0.00 0.00 4.40
2745 5998 0.816825 CTGGAATGGTGAGGATGCCG 60.817 60.000 0.00 0.00 0.00 5.69
2746 5999 1.224592 GGAATGGTGAGGATGCCGT 59.775 57.895 0.00 0.00 0.00 5.68
2747 6000 0.815615 GGAATGGTGAGGATGCCGTC 60.816 60.000 0.00 0.00 0.00 4.79
2755 6008 4.115199 GGATGCCGTCCCTTGCCT 62.115 66.667 0.00 0.00 41.50 4.75
2756 6009 2.514824 GATGCCGTCCCTTGCCTC 60.515 66.667 0.00 0.00 0.00 4.70
2757 6010 3.011517 ATGCCGTCCCTTGCCTCT 61.012 61.111 0.00 0.00 0.00 3.69
2758 6011 2.932130 GATGCCGTCCCTTGCCTCTC 62.932 65.000 0.00 0.00 0.00 3.20
2759 6012 3.394836 GCCGTCCCTTGCCTCTCT 61.395 66.667 0.00 0.00 0.00 3.10
2760 6013 2.960688 GCCGTCCCTTGCCTCTCTT 61.961 63.158 0.00 0.00 0.00 2.85
2761 6014 1.219393 CCGTCCCTTGCCTCTCTTC 59.781 63.158 0.00 0.00 0.00 2.87
2762 6015 1.261238 CCGTCCCTTGCCTCTCTTCT 61.261 60.000 0.00 0.00 0.00 2.85
2763 6016 0.174617 CGTCCCTTGCCTCTCTTCTC 59.825 60.000 0.00 0.00 0.00 2.87
2764 6017 0.539518 GTCCCTTGCCTCTCTTCTCC 59.460 60.000 0.00 0.00 0.00 3.71
2765 6018 0.415429 TCCCTTGCCTCTCTTCTCCT 59.585 55.000 0.00 0.00 0.00 3.69
2766 6019 1.203364 TCCCTTGCCTCTCTTCTCCTT 60.203 52.381 0.00 0.00 0.00 3.36
2767 6020 1.065564 CCCTTGCCTCTCTTCTCCTTG 60.066 57.143 0.00 0.00 0.00 3.61
2768 6021 1.065564 CCTTGCCTCTCTTCTCCTTGG 60.066 57.143 0.00 0.00 0.00 3.61
2769 6022 0.326264 TTGCCTCTCTTCTCCTTGGC 59.674 55.000 0.00 0.00 40.62 4.52
2770 6023 1.223211 GCCTCTCTTCTCCTTGGCC 59.777 63.158 0.00 0.00 34.81 5.36
2771 6024 1.271127 GCCTCTCTTCTCCTTGGCCT 61.271 60.000 3.32 0.00 34.81 5.19
2772 6025 1.284313 CCTCTCTTCTCCTTGGCCTT 58.716 55.000 3.32 0.00 0.00 4.35
2773 6026 1.209261 CCTCTCTTCTCCTTGGCCTTC 59.791 57.143 3.32 0.00 0.00 3.46
2774 6027 2.187100 CTCTCTTCTCCTTGGCCTTCT 58.813 52.381 3.32 0.00 0.00 2.85
2775 6028 2.168313 CTCTCTTCTCCTTGGCCTTCTC 59.832 54.545 3.32 0.00 0.00 2.87
2776 6029 2.187100 CTCTTCTCCTTGGCCTTCTCT 58.813 52.381 3.32 0.00 0.00 3.10
2777 6030 1.905215 TCTTCTCCTTGGCCTTCTCTG 59.095 52.381 3.32 0.00 0.00 3.35
2778 6031 0.987294 TTCTCCTTGGCCTTCTCTGG 59.013 55.000 3.32 0.00 0.00 3.86
2779 6032 0.911525 TCTCCTTGGCCTTCTCTGGG 60.912 60.000 3.32 0.00 0.00 4.45
2780 6033 0.911525 CTCCTTGGCCTTCTCTGGGA 60.912 60.000 3.32 0.19 0.00 4.37
2781 6034 0.475632 TCCTTGGCCTTCTCTGGGAA 60.476 55.000 3.32 0.00 0.00 3.97
2789 6042 2.977578 TTCTCTGGGAAGAGGGTCG 58.022 57.895 3.06 0.00 36.62 4.79
2790 6043 1.258445 TTCTCTGGGAAGAGGGTCGC 61.258 60.000 3.06 0.00 36.62 5.19
2791 6044 2.683933 TCTGGGAAGAGGGTCGCC 60.684 66.667 0.00 0.00 0.00 5.54
2792 6045 4.148825 CTGGGAAGAGGGTCGCCG 62.149 72.222 0.00 0.00 0.00 6.46
2796 6049 4.162690 GAAGAGGGTCGCCGCCAT 62.163 66.667 0.33 0.00 0.00 4.40
2797 6050 3.682292 GAAGAGGGTCGCCGCCATT 62.682 63.158 0.33 0.00 0.00 3.16
2798 6051 3.268103 AAGAGGGTCGCCGCCATTT 62.268 57.895 0.33 0.00 0.00 2.32
2799 6052 2.750237 GAGGGTCGCCGCCATTTT 60.750 61.111 0.33 0.00 0.00 1.82
2800 6053 2.750237 AGGGTCGCCGCCATTTTC 60.750 61.111 0.33 0.00 0.00 2.29
2801 6054 2.750237 GGGTCGCCGCCATTTTCT 60.750 61.111 0.33 0.00 0.00 2.52
2802 6055 2.340328 GGGTCGCCGCCATTTTCTT 61.340 57.895 0.33 0.00 0.00 2.52
2803 6056 1.154035 GGTCGCCGCCATTTTCTTG 60.154 57.895 0.00 0.00 0.00 3.02
2804 6057 1.801512 GTCGCCGCCATTTTCTTGC 60.802 57.895 0.00 0.00 0.00 4.01
2805 6058 2.506881 CGCCGCCATTTTCTTGCC 60.507 61.111 0.00 0.00 0.00 4.52
2806 6059 2.506881 GCCGCCATTTTCTTGCCG 60.507 61.111 0.00 0.00 0.00 5.69
2807 6060 2.988688 GCCGCCATTTTCTTGCCGA 61.989 57.895 0.00 0.00 0.00 5.54
2808 6061 1.137404 CCGCCATTTTCTTGCCGAG 59.863 57.895 0.00 0.00 0.00 4.63
2809 6062 1.514873 CGCCATTTTCTTGCCGAGC 60.515 57.895 0.00 0.00 0.00 5.03
2810 6063 1.586028 GCCATTTTCTTGCCGAGCA 59.414 52.632 0.00 0.00 36.47 4.26
2811 6064 0.457337 GCCATTTTCTTGCCGAGCAG 60.457 55.000 0.00 0.00 40.61 4.24
2812 6065 0.457337 CCATTTTCTTGCCGAGCAGC 60.457 55.000 0.00 0.00 40.61 5.25
2813 6066 0.795735 CATTTTCTTGCCGAGCAGCG 60.796 55.000 0.00 0.00 40.61 5.18
2814 6067 2.533391 ATTTTCTTGCCGAGCAGCGC 62.533 55.000 0.00 0.00 40.61 5.92
2836 6089 2.106332 GGTTCGTCCGCCATCGAT 59.894 61.111 0.00 0.00 38.10 3.59
2837 6090 2.237751 GGTTCGTCCGCCATCGATG 61.238 63.158 18.76 18.76 38.10 3.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 4.115516 GCACATACCTATATCCATGCTCG 58.884 47.826 0.00 0.00 0.00 5.03
56 57 7.169645 CCAATTTGCTATTTACATGCACATACC 59.830 37.037 0.00 0.00 36.37 2.73
365 369 3.652869 TGAAGTCTGGATGGGAGAGTTTT 59.347 43.478 0.00 0.00 33.98 2.43
389 393 2.668632 GAATCCACGGGCTCACCA 59.331 61.111 0.00 0.00 40.22 4.17
392 396 1.945354 GAGACGAATCCACGGGCTCA 61.945 60.000 0.00 0.00 38.07 4.26
408 412 2.238084 AGCGGCATATAGATGGGAGA 57.762 50.000 1.45 0.00 33.26 3.71
414 418 2.783135 CCACCAAAGCGGCATATAGAT 58.217 47.619 1.45 0.00 39.03 1.98
429 433 4.631740 TCTCTCCACCGGCCACCA 62.632 66.667 0.00 0.00 0.00 4.17
444 449 0.695803 AGCCATCGGAAATCCCCTCT 60.696 55.000 0.00 0.00 0.00 3.69
468 473 4.442052 GCCTAACCTAAACTACTAACCGGG 60.442 50.000 6.32 0.00 0.00 5.73
512 519 3.869272 GCCATCCGCTTGAGCACG 61.869 66.667 3.65 0.00 42.21 5.34
555 562 1.676678 CGAGAAGGATTGGAGCCCGA 61.677 60.000 0.00 0.00 0.00 5.14
570 577 2.161808 GTCCAGACAGACGAATTCGAGA 59.838 50.000 33.05 12.98 43.02 4.04
612 619 5.975988 TTAAGGAGGCCACAAGAATCTAT 57.024 39.130 5.01 0.00 0.00 1.98
615 622 3.444034 GGTTTAAGGAGGCCACAAGAATC 59.556 47.826 5.01 0.00 0.00 2.52
620 627 0.766131 TCGGTTTAAGGAGGCCACAA 59.234 50.000 5.01 0.00 0.00 3.33
641 648 5.010719 TCACATGACGAGAAACTCTAACCTT 59.989 40.000 0.00 0.00 0.00 3.50
704 1138 7.411486 ACATCTTATATTATGGGACGGAGAG 57.589 40.000 0.00 0.00 0.00 3.20
705 1139 7.792364 AACATCTTATATTATGGGACGGAGA 57.208 36.000 0.00 0.00 0.00 3.71
706 1140 8.848474 AAAACATCTTATATTATGGGACGGAG 57.152 34.615 0.00 0.00 0.00 4.63
729 1163 5.220777 GCTAGCAGTTGTGTAGTGTCAAAAA 60.221 40.000 10.63 0.00 0.00 1.94
730 1164 4.272504 GCTAGCAGTTGTGTAGTGTCAAAA 59.727 41.667 10.63 0.00 0.00 2.44
731 1165 3.807622 GCTAGCAGTTGTGTAGTGTCAAA 59.192 43.478 10.63 0.00 0.00 2.69
732 1166 3.069586 AGCTAGCAGTTGTGTAGTGTCAA 59.930 43.478 18.83 0.00 0.00 3.18
733 1167 2.628178 AGCTAGCAGTTGTGTAGTGTCA 59.372 45.455 18.83 0.00 0.00 3.58
734 1168 3.305398 AGCTAGCAGTTGTGTAGTGTC 57.695 47.619 18.83 0.00 0.00 3.67
735 1169 4.557205 GTTAGCTAGCAGTTGTGTAGTGT 58.443 43.478 18.83 0.00 0.00 3.55
736 1170 3.927142 GGTTAGCTAGCAGTTGTGTAGTG 59.073 47.826 18.83 0.00 0.00 2.74
781 1215 0.034670 GCCTGGGCTTGAGATCTTGT 60.035 55.000 4.12 0.00 38.26 3.16
797 1231 1.729267 AAACATGTCCCTGTGGGCCT 61.729 55.000 4.53 0.00 43.94 5.19
820 1254 2.702592 TCGATTTATCTTTGCCCCGT 57.297 45.000 0.00 0.00 0.00 5.28
864 1298 3.914312 AGACCTCGCATATCCGTTTATG 58.086 45.455 0.00 0.00 33.54 1.90
919 2290 3.326588 TGTAGTTCCACTTGCACTATGGT 59.673 43.478 9.34 0.00 34.89 3.55
1401 2788 1.750399 GGCCTTGTCCATGCGTGAT 60.750 57.895 7.72 0.00 0.00 3.06
1740 3142 3.224324 ACCACGACGTCCAGCACT 61.224 61.111 10.58 0.00 0.00 4.40
1930 3350 3.629858 GCAAAGGCGCCAGATTTAG 57.370 52.632 31.54 15.12 0.00 1.85
2142 5388 3.374058 GCGCAAGATACACCAATACAAGT 59.626 43.478 0.30 0.00 43.02 3.16
2172 5418 8.369424 TCTTGAACCAAACATTCATGATTCATT 58.631 29.630 0.00 0.00 36.10 2.57
2210 5456 5.942236 GGCCATTAGATTGATCATAAGCTGA 59.058 40.000 0.00 0.00 38.53 4.26
2211 5457 5.944599 AGGCCATTAGATTGATCATAAGCTG 59.055 40.000 5.01 0.00 0.00 4.24
2212 5458 6.012683 AGAGGCCATTAGATTGATCATAAGCT 60.013 38.462 5.01 0.00 0.00 3.74
2213 5459 6.179040 AGAGGCCATTAGATTGATCATAAGC 58.821 40.000 5.01 0.00 0.00 3.09
2214 5460 7.622713 AGAGAGGCCATTAGATTGATCATAAG 58.377 38.462 5.01 0.00 0.00 1.73
2215 5461 7.565190 AGAGAGGCCATTAGATTGATCATAA 57.435 36.000 5.01 0.00 0.00 1.90
2216 5462 8.851106 ATAGAGAGGCCATTAGATTGATCATA 57.149 34.615 5.01 0.00 0.00 2.15
2217 5463 7.752518 ATAGAGAGGCCATTAGATTGATCAT 57.247 36.000 5.01 0.00 0.00 2.45
2218 5464 8.670521 TTATAGAGAGGCCATTAGATTGATCA 57.329 34.615 5.01 0.00 0.00 2.92
2251 5497 3.572255 ACAAAACCAGCGTACCATCAATT 59.428 39.130 0.00 0.00 0.00 2.32
2254 5500 2.264005 ACAAAACCAGCGTACCATCA 57.736 45.000 0.00 0.00 0.00 3.07
2304 5556 8.932791 CAATCGTTTGTAATAAACTCTACCTGT 58.067 33.333 0.00 0.00 0.00 4.00
2313 5565 6.804783 CCCCACTTCAATCGTTTGTAATAAAC 59.195 38.462 6.14 0.00 34.32 2.01
2343 5595 5.180304 GCGAGAAATCCTCTTTTCAACTCTT 59.820 40.000 0.00 0.00 39.78 2.85
2378 5630 7.543172 TGAAAGATTCAAGCATAGTTTTGCATC 59.457 33.333 0.00 0.00 38.78 3.91
2393 5645 2.094258 GCGCGTGAGATGAAAGATTCAA 59.906 45.455 8.43 0.00 43.95 2.69
2409 5661 1.100510 TGTATCACTTAGGAGCGCGT 58.899 50.000 8.43 0.00 0.00 6.01
2411 5663 2.860735 CACTTGTATCACTTAGGAGCGC 59.139 50.000 0.00 0.00 0.00 5.92
2450 5703 9.769677 AAGCTAGGATTTCCCTTTAATTAAACT 57.230 29.630 6.54 3.22 44.85 2.66
2454 5707 8.899771 CGAAAAGCTAGGATTTCCCTTTAATTA 58.100 33.333 3.59 0.00 44.85 1.40
2455 5708 7.614192 TCGAAAAGCTAGGATTTCCCTTTAATT 59.386 33.333 3.59 0.00 44.85 1.40
2456 5709 7.116736 TCGAAAAGCTAGGATTTCCCTTTAAT 58.883 34.615 3.59 0.00 44.85 1.40
2457 5710 6.478129 TCGAAAAGCTAGGATTTCCCTTTAA 58.522 36.000 3.59 0.00 44.85 1.52
2458 5711 6.057321 TCGAAAAGCTAGGATTTCCCTTTA 57.943 37.500 3.59 0.00 44.85 1.85
2459 5712 4.918588 TCGAAAAGCTAGGATTTCCCTTT 58.081 39.130 3.59 0.00 44.85 3.11
2460 5713 4.569719 TCGAAAAGCTAGGATTTCCCTT 57.430 40.909 3.59 0.00 44.85 3.95
2462 5715 4.142447 GGTTTCGAAAAGCTAGGATTTCCC 60.142 45.833 13.10 0.80 36.42 3.97
2463 5716 4.436986 CGGTTTCGAAAAGCTAGGATTTCC 60.437 45.833 13.10 4.02 39.00 3.13
2464 5717 4.390909 TCGGTTTCGAAAAGCTAGGATTTC 59.609 41.667 13.10 0.00 43.03 2.17
2465 5718 4.320870 TCGGTTTCGAAAAGCTAGGATTT 58.679 39.130 13.10 0.00 43.03 2.17
2466 5719 3.934068 TCGGTTTCGAAAAGCTAGGATT 58.066 40.909 13.10 0.00 43.03 3.01
2467 5720 3.604875 TCGGTTTCGAAAAGCTAGGAT 57.395 42.857 13.10 0.00 43.03 3.24
2485 5738 3.486263 GGGAGAAACCGCACATCG 58.514 61.111 0.00 0.00 40.11 3.84
2503 5756 0.750850 ATTAGGACGTGACCCATCGG 59.249 55.000 0.00 0.00 0.00 4.18
2504 5757 1.136305 ACATTAGGACGTGACCCATCG 59.864 52.381 0.00 0.00 0.00 3.84
2505 5758 2.981859 ACATTAGGACGTGACCCATC 57.018 50.000 0.00 0.00 0.00 3.51
2506 5759 3.429822 CGTTACATTAGGACGTGACCCAT 60.430 47.826 0.00 0.00 32.52 4.00
2507 5760 2.094597 CGTTACATTAGGACGTGACCCA 60.095 50.000 0.00 0.00 32.52 4.51
2508 5761 2.533266 CGTTACATTAGGACGTGACCC 58.467 52.381 0.00 0.00 32.52 4.46
2509 5762 2.164219 TCCGTTACATTAGGACGTGACC 59.836 50.000 0.00 0.00 35.17 4.02
2510 5763 3.174375 GTCCGTTACATTAGGACGTGAC 58.826 50.000 0.00 0.00 43.96 3.67
2511 5764 3.492421 GTCCGTTACATTAGGACGTGA 57.508 47.619 0.00 0.00 43.96 4.35
2516 5769 3.628005 CGCGTCCGTTACATTAGGA 57.372 52.632 0.00 0.00 0.00 2.94
2529 5782 1.588861 GCAAGATTAGAAGGACGCGTC 59.411 52.381 30.67 30.67 0.00 5.19
2530 5783 1.641577 GCAAGATTAGAAGGACGCGT 58.358 50.000 13.85 13.85 0.00 6.01
2531 5784 0.931005 GGCAAGATTAGAAGGACGCG 59.069 55.000 3.53 3.53 0.00 6.01
2532 5785 2.159028 AGAGGCAAGATTAGAAGGACGC 60.159 50.000 0.00 0.00 0.00 5.19
2533 5786 3.810310 AGAGGCAAGATTAGAAGGACG 57.190 47.619 0.00 0.00 0.00 4.79
2534 5787 4.837972 ACAAGAGGCAAGATTAGAAGGAC 58.162 43.478 0.00 0.00 0.00 3.85
2535 5788 6.620877 TTACAAGAGGCAAGATTAGAAGGA 57.379 37.500 0.00 0.00 0.00 3.36
2536 5789 5.295540 GCTTACAAGAGGCAAGATTAGAAGG 59.704 44.000 0.00 0.00 0.00 3.46
2537 5790 5.006165 CGCTTACAAGAGGCAAGATTAGAAG 59.994 44.000 0.00 0.00 0.00 2.85
2538 5791 4.870426 CGCTTACAAGAGGCAAGATTAGAA 59.130 41.667 0.00 0.00 0.00 2.10
2539 5792 4.081642 ACGCTTACAAGAGGCAAGATTAGA 60.082 41.667 0.00 0.00 0.00 2.10
2540 5793 4.184629 ACGCTTACAAGAGGCAAGATTAG 58.815 43.478 0.00 0.00 0.00 1.73
2541 5794 4.181578 GACGCTTACAAGAGGCAAGATTA 58.818 43.478 0.00 0.00 33.63 1.75
2542 5795 3.003480 GACGCTTACAAGAGGCAAGATT 58.997 45.455 0.00 0.00 33.63 2.40
2543 5796 2.622436 GACGCTTACAAGAGGCAAGAT 58.378 47.619 0.00 0.00 33.63 2.40
2544 5797 1.668919 CGACGCTTACAAGAGGCAAGA 60.669 52.381 0.00 0.00 32.89 3.02
2545 5798 0.716108 CGACGCTTACAAGAGGCAAG 59.284 55.000 0.00 0.00 32.89 4.01
2546 5799 1.289109 GCGACGCTTACAAGAGGCAA 61.289 55.000 13.73 0.00 32.89 4.52
2547 5800 1.736645 GCGACGCTTACAAGAGGCA 60.737 57.895 13.73 0.00 32.89 4.75
2548 5801 2.789203 CGCGACGCTTACAAGAGGC 61.789 63.158 19.02 0.00 0.00 4.70
2549 5802 1.154093 TCGCGACGCTTACAAGAGG 60.154 57.895 19.02 0.00 0.00 3.69
2550 5803 0.454620 AGTCGCGACGCTTACAAGAG 60.455 55.000 31.56 0.00 36.20 2.85
2551 5804 0.728129 CAGTCGCGACGCTTACAAGA 60.728 55.000 31.56 3.33 36.20 3.02
2552 5805 1.002250 ACAGTCGCGACGCTTACAAG 61.002 55.000 31.56 17.12 36.20 3.16
2553 5806 1.008194 ACAGTCGCGACGCTTACAA 60.008 52.632 31.56 0.00 36.20 2.41
2554 5807 1.728074 CACAGTCGCGACGCTTACA 60.728 57.895 31.56 0.00 36.20 2.41
2555 5808 3.055905 GCACAGTCGCGACGCTTAC 62.056 63.158 31.56 18.18 36.20 2.34
2556 5809 2.803670 GCACAGTCGCGACGCTTA 60.804 61.111 31.56 2.64 36.20 3.09
2564 5817 3.753539 GACACGTCGCACAGTCGC 61.754 66.667 0.00 0.00 34.85 5.19
2565 5818 3.097728 GGACACGTCGCACAGTCG 61.098 66.667 0.00 0.00 37.41 4.18
2566 5819 2.733593 GGGACACGTCGCACAGTC 60.734 66.667 9.17 0.00 41.53 3.51
2567 5820 4.295119 GGGGACACGTCGCACAGT 62.295 66.667 15.13 0.00 43.40 3.55
2568 5821 3.916392 GAGGGGACACGTCGCACAG 62.916 68.421 15.13 0.00 43.40 3.66
2569 5822 3.986006 GAGGGGACACGTCGCACA 61.986 66.667 15.13 0.00 43.40 4.57
2570 5823 4.736896 GGAGGGGACACGTCGCAC 62.737 72.222 15.13 8.74 43.40 5.34
2580 5833 5.950544 CATATTTATATGTCCGGAGGGGA 57.049 43.478 3.06 0.00 38.97 4.81
2600 5853 8.886719 CACTTGATTGACTGTAATGATGTACAT 58.113 33.333 8.43 8.43 41.45 2.29
2601 5854 8.093927 TCACTTGATTGACTGTAATGATGTACA 58.906 33.333 0.00 0.00 33.04 2.90
2602 5855 8.479313 TCACTTGATTGACTGTAATGATGTAC 57.521 34.615 0.00 0.00 0.00 2.90
2603 5856 8.531146 TCTCACTTGATTGACTGTAATGATGTA 58.469 33.333 0.00 0.00 0.00 2.29
2604 5857 7.389232 TCTCACTTGATTGACTGTAATGATGT 58.611 34.615 0.00 0.00 0.00 3.06
2605 5858 7.838771 TCTCACTTGATTGACTGTAATGATG 57.161 36.000 0.00 0.00 0.00 3.07
2606 5859 8.262933 TGATCTCACTTGATTGACTGTAATGAT 58.737 33.333 0.00 0.00 0.00 2.45
2607 5860 7.614494 TGATCTCACTTGATTGACTGTAATGA 58.386 34.615 0.00 0.00 0.00 2.57
2608 5861 7.838771 TGATCTCACTTGATTGACTGTAATG 57.161 36.000 0.00 0.00 0.00 1.90
2609 5862 9.458727 AAATGATCTCACTTGATTGACTGTAAT 57.541 29.630 0.00 0.00 0.00 1.89
2610 5863 8.853077 AAATGATCTCACTTGATTGACTGTAA 57.147 30.769 0.00 0.00 0.00 2.41
2611 5864 8.853077 AAAATGATCTCACTTGATTGACTGTA 57.147 30.769 0.00 0.00 0.00 2.74
2612 5865 7.756395 AAAATGATCTCACTTGATTGACTGT 57.244 32.000 0.00 0.00 0.00 3.55
2613 5866 8.944029 AGTAAAATGATCTCACTTGATTGACTG 58.056 33.333 0.00 0.00 0.00 3.51
2614 5867 8.944029 CAGTAAAATGATCTCACTTGATTGACT 58.056 33.333 0.00 0.00 0.00 3.41
2615 5868 8.725148 ACAGTAAAATGATCTCACTTGATTGAC 58.275 33.333 0.00 0.00 0.00 3.18
2616 5869 8.853077 ACAGTAAAATGATCTCACTTGATTGA 57.147 30.769 0.00 0.00 0.00 2.57
2617 5870 9.552114 GAACAGTAAAATGATCTCACTTGATTG 57.448 33.333 0.00 0.00 0.00 2.67
2618 5871 9.288576 TGAACAGTAAAATGATCTCACTTGATT 57.711 29.630 0.00 0.00 0.00 2.57
2619 5872 8.725148 GTGAACAGTAAAATGATCTCACTTGAT 58.275 33.333 0.00 0.00 31.36 2.57
2620 5873 7.095649 CGTGAACAGTAAAATGATCTCACTTGA 60.096 37.037 0.00 0.00 31.61 3.02
2621 5874 7.011773 CGTGAACAGTAAAATGATCTCACTTG 58.988 38.462 0.00 0.00 31.61 3.16
2622 5875 6.347725 GCGTGAACAGTAAAATGATCTCACTT 60.348 38.462 0.00 0.00 31.61 3.16
2623 5876 5.120830 GCGTGAACAGTAAAATGATCTCACT 59.879 40.000 0.00 0.00 31.61 3.41
2624 5877 5.107104 TGCGTGAACAGTAAAATGATCTCAC 60.107 40.000 0.00 0.00 0.00 3.51
2625 5878 4.994217 TGCGTGAACAGTAAAATGATCTCA 59.006 37.500 0.00 0.00 0.00 3.27
2626 5879 5.107104 TGTGCGTGAACAGTAAAATGATCTC 60.107 40.000 0.00 0.00 0.00 2.75
2627 5880 4.754618 TGTGCGTGAACAGTAAAATGATCT 59.245 37.500 0.00 0.00 0.00 2.75
2628 5881 5.029650 TGTGCGTGAACAGTAAAATGATC 57.970 39.130 0.00 0.00 0.00 2.92
2629 5882 5.034554 CTGTGCGTGAACAGTAAAATGAT 57.965 39.130 0.00 0.00 42.21 2.45
2630 5883 4.466567 CTGTGCGTGAACAGTAAAATGA 57.533 40.909 0.00 0.00 42.21 2.57
2639 5892 3.685272 TGTAAAGAAACTGTGCGTGAACA 59.315 39.130 0.00 0.00 0.00 3.18
2640 5893 4.026407 GTGTAAAGAAACTGTGCGTGAAC 58.974 43.478 0.00 0.00 0.00 3.18
2641 5894 3.242155 CGTGTAAAGAAACTGTGCGTGAA 60.242 43.478 0.00 0.00 0.00 3.18
2642 5895 2.283086 CGTGTAAAGAAACTGTGCGTGA 59.717 45.455 0.00 0.00 0.00 4.35
2643 5896 2.029970 ACGTGTAAAGAAACTGTGCGTG 59.970 45.455 0.00 0.00 0.00 5.34
2644 5897 2.273557 ACGTGTAAAGAAACTGTGCGT 58.726 42.857 0.00 0.00 0.00 5.24
2645 5898 3.026349 CAACGTGTAAAGAAACTGTGCG 58.974 45.455 0.00 0.00 0.00 5.34
2646 5899 4.011058 ACAACGTGTAAAGAAACTGTGC 57.989 40.909 0.00 0.00 0.00 4.57
2647 5900 5.019498 GTGACAACGTGTAAAGAAACTGTG 58.981 41.667 0.00 0.00 0.00 3.66
2648 5901 4.201647 CGTGACAACGTGTAAAGAAACTGT 60.202 41.667 0.00 0.00 44.93 3.55
2649 5902 4.260670 CGTGACAACGTGTAAAGAAACTG 58.739 43.478 0.00 0.00 44.93 3.16
2650 5903 4.509915 CGTGACAACGTGTAAAGAAACT 57.490 40.909 0.00 0.00 44.93 2.66
2663 5916 1.140816 GGAGAGAAGTGCGTGACAAC 58.859 55.000 0.00 0.00 0.00 3.32
2664 5917 0.750249 TGGAGAGAAGTGCGTGACAA 59.250 50.000 0.00 0.00 0.00 3.18
2665 5918 0.315251 CTGGAGAGAAGTGCGTGACA 59.685 55.000 0.00 0.00 0.00 3.58
2666 5919 1.011451 GCTGGAGAGAAGTGCGTGAC 61.011 60.000 0.00 0.00 0.00 3.67
2667 5920 1.290324 GCTGGAGAGAAGTGCGTGA 59.710 57.895 0.00 0.00 0.00 4.35
2668 5921 2.091112 CGCTGGAGAGAAGTGCGTG 61.091 63.158 0.00 0.00 41.45 5.34
2669 5922 2.206515 CTCGCTGGAGAGAAGTGCGT 62.207 60.000 0.00 0.00 45.69 5.24
2670 5923 1.515952 CTCGCTGGAGAGAAGTGCG 60.516 63.158 0.00 0.00 43.27 5.34
2671 5924 1.886585 TCTCGCTGGAGAGAAGTGC 59.113 57.895 1.75 0.00 44.28 4.40
2678 5931 1.927608 CTTGTCGCTCTCGCTGGAGA 61.928 60.000 6.93 0.00 46.90 3.71
2679 5932 1.515952 CTTGTCGCTCTCGCTGGAG 60.516 63.158 0.00 0.00 41.89 3.86
2680 5933 2.568612 CTTGTCGCTCTCGCTGGA 59.431 61.111 0.00 0.00 35.26 3.86
2681 5934 2.507992 CCTTGTCGCTCTCGCTGG 60.508 66.667 0.00 0.00 35.26 4.85
2682 5935 3.184683 GCCTTGTCGCTCTCGCTG 61.185 66.667 0.00 0.00 35.26 5.18
2683 5936 4.443266 GGCCTTGTCGCTCTCGCT 62.443 66.667 0.00 0.00 35.26 4.93
2691 5944 2.250939 TTCTTGTGCGGCCTTGTCG 61.251 57.895 0.00 0.00 0.00 4.35
2692 5945 1.166531 AGTTCTTGTGCGGCCTTGTC 61.167 55.000 0.00 0.00 0.00 3.18
2693 5946 1.152963 AGTTCTTGTGCGGCCTTGT 60.153 52.632 0.00 0.00 0.00 3.16
2694 5947 1.576421 GAGTTCTTGTGCGGCCTTG 59.424 57.895 0.00 0.00 0.00 3.61
2695 5948 1.961277 CGAGTTCTTGTGCGGCCTT 60.961 57.895 0.00 0.00 0.00 4.35
2696 5949 2.357517 CGAGTTCTTGTGCGGCCT 60.358 61.111 0.00 0.00 0.00 5.19
2697 5950 2.665185 ACGAGTTCTTGTGCGGCC 60.665 61.111 0.00 0.00 0.00 6.13
2698 5951 2.853914 GACGAGTTCTTGTGCGGC 59.146 61.111 0.00 0.00 0.00 6.53
2699 5952 2.372690 CCGACGAGTTCTTGTGCGG 61.373 63.158 0.00 12.71 0.00 5.69
2700 5953 1.337817 CTCCGACGAGTTCTTGTGCG 61.338 60.000 0.00 0.00 0.00 5.34
2701 5954 0.039437 TCTCCGACGAGTTCTTGTGC 60.039 55.000 0.00 0.00 37.40 4.57
2702 5955 2.417339 TTCTCCGACGAGTTCTTGTG 57.583 50.000 0.00 0.00 37.40 3.33
2703 5956 3.447918 TTTTCTCCGACGAGTTCTTGT 57.552 42.857 0.00 0.00 37.40 3.16
2704 5957 4.686554 AGATTTTTCTCCGACGAGTTCTTG 59.313 41.667 0.00 0.00 37.40 3.02
2705 5958 4.686554 CAGATTTTTCTCCGACGAGTTCTT 59.313 41.667 0.00 0.00 37.40 2.52
2706 5959 4.238514 CAGATTTTTCTCCGACGAGTTCT 58.761 43.478 0.00 0.00 37.40 3.01
2707 5960 3.368236 CCAGATTTTTCTCCGACGAGTTC 59.632 47.826 0.00 0.00 37.40 3.01
2708 5961 3.006537 TCCAGATTTTTCTCCGACGAGTT 59.993 43.478 0.00 0.00 37.40 3.01
2709 5962 2.561419 TCCAGATTTTTCTCCGACGAGT 59.439 45.455 0.00 0.00 37.40 4.18
2710 5963 3.232213 TCCAGATTTTTCTCCGACGAG 57.768 47.619 0.00 0.00 37.48 4.18
2711 5964 3.671008 TTCCAGATTTTTCTCCGACGA 57.329 42.857 0.00 0.00 0.00 4.20
2712 5965 3.063997 CCATTCCAGATTTTTCTCCGACG 59.936 47.826 0.00 0.00 0.00 5.12
2713 5966 4.010349 ACCATTCCAGATTTTTCTCCGAC 58.990 43.478 0.00 0.00 0.00 4.79
2714 5967 4.009675 CACCATTCCAGATTTTTCTCCGA 58.990 43.478 0.00 0.00 0.00 4.55
2715 5968 4.009675 TCACCATTCCAGATTTTTCTCCG 58.990 43.478 0.00 0.00 0.00 4.63
2716 5969 4.400567 CCTCACCATTCCAGATTTTTCTCC 59.599 45.833 0.00 0.00 0.00 3.71
2717 5970 5.256474 TCCTCACCATTCCAGATTTTTCTC 58.744 41.667 0.00 0.00 0.00 2.87
2718 5971 5.261040 TCCTCACCATTCCAGATTTTTCT 57.739 39.130 0.00 0.00 0.00 2.52
2719 5972 5.680665 GCATCCTCACCATTCCAGATTTTTC 60.681 44.000 0.00 0.00 0.00 2.29
2720 5973 4.161001 GCATCCTCACCATTCCAGATTTTT 59.839 41.667 0.00 0.00 0.00 1.94
2721 5974 3.703052 GCATCCTCACCATTCCAGATTTT 59.297 43.478 0.00 0.00 0.00 1.82
2722 5975 3.294214 GCATCCTCACCATTCCAGATTT 58.706 45.455 0.00 0.00 0.00 2.17
2723 5976 2.423947 GGCATCCTCACCATTCCAGATT 60.424 50.000 0.00 0.00 0.00 2.40
2724 5977 1.144503 GGCATCCTCACCATTCCAGAT 59.855 52.381 0.00 0.00 0.00 2.90
2725 5978 0.548031 GGCATCCTCACCATTCCAGA 59.452 55.000 0.00 0.00 0.00 3.86
2726 5979 0.816825 CGGCATCCTCACCATTCCAG 60.817 60.000 0.00 0.00 0.00 3.86
2727 5980 1.224315 CGGCATCCTCACCATTCCA 59.776 57.895 0.00 0.00 0.00 3.53
2728 5981 0.815615 GACGGCATCCTCACCATTCC 60.816 60.000 0.00 0.00 0.00 3.01
2729 5982 0.815615 GGACGGCATCCTCACCATTC 60.816 60.000 0.00 0.00 45.22 2.67
2730 5983 1.224592 GGACGGCATCCTCACCATT 59.775 57.895 0.00 0.00 45.22 3.16
2731 5984 2.911143 GGACGGCATCCTCACCAT 59.089 61.111 0.00 0.00 45.22 3.55
2739 5992 2.514824 GAGGCAAGGGACGGCATC 60.515 66.667 0.00 0.00 37.20 3.91
2740 5993 3.011517 AGAGGCAAGGGACGGCAT 61.012 61.111 0.00 0.00 35.33 4.40
2741 5994 3.706373 GAGAGGCAAGGGACGGCA 61.706 66.667 0.00 0.00 35.33 5.69
2742 5995 2.860972 GAAGAGAGGCAAGGGACGGC 62.861 65.000 0.00 0.00 0.00 5.68
2743 5996 1.219393 GAAGAGAGGCAAGGGACGG 59.781 63.158 0.00 0.00 0.00 4.79
2744 5997 0.174617 GAGAAGAGAGGCAAGGGACG 59.825 60.000 0.00 0.00 0.00 4.79
2745 5998 0.539518 GGAGAAGAGAGGCAAGGGAC 59.460 60.000 0.00 0.00 0.00 4.46
2746 5999 0.415429 AGGAGAAGAGAGGCAAGGGA 59.585 55.000 0.00 0.00 0.00 4.20
2747 6000 1.065564 CAAGGAGAAGAGAGGCAAGGG 60.066 57.143 0.00 0.00 0.00 3.95
2748 6001 1.065564 CCAAGGAGAAGAGAGGCAAGG 60.066 57.143 0.00 0.00 0.00 3.61
2749 6002 1.678425 GCCAAGGAGAAGAGAGGCAAG 60.678 57.143 0.00 0.00 41.63 4.01
2750 6003 0.326264 GCCAAGGAGAAGAGAGGCAA 59.674 55.000 0.00 0.00 41.63 4.52
2751 6004 1.557269 GGCCAAGGAGAAGAGAGGCA 61.557 60.000 0.00 0.00 43.72 4.75
2752 6005 1.223211 GGCCAAGGAGAAGAGAGGC 59.777 63.158 0.00 0.00 41.29 4.70
2753 6006 1.209261 GAAGGCCAAGGAGAAGAGAGG 59.791 57.143 5.01 0.00 0.00 3.69
2754 6007 2.168313 GAGAAGGCCAAGGAGAAGAGAG 59.832 54.545 5.01 0.00 0.00 3.20
2755 6008 2.183679 GAGAAGGCCAAGGAGAAGAGA 58.816 52.381 5.01 0.00 0.00 3.10
2756 6009 2.093553 CAGAGAAGGCCAAGGAGAAGAG 60.094 54.545 5.01 0.00 0.00 2.85
2757 6010 1.905215 CAGAGAAGGCCAAGGAGAAGA 59.095 52.381 5.01 0.00 0.00 2.87
2758 6011 1.065564 CCAGAGAAGGCCAAGGAGAAG 60.066 57.143 5.01 0.00 0.00 2.85
2759 6012 0.987294 CCAGAGAAGGCCAAGGAGAA 59.013 55.000 5.01 0.00 0.00 2.87
2760 6013 0.911525 CCCAGAGAAGGCCAAGGAGA 60.912 60.000 5.01 0.00 0.00 3.71
2761 6014 0.911525 TCCCAGAGAAGGCCAAGGAG 60.912 60.000 5.01 0.00 0.00 3.69
2762 6015 0.475632 TTCCCAGAGAAGGCCAAGGA 60.476 55.000 5.01 0.00 0.00 3.36
2763 6016 2.078452 TTCCCAGAGAAGGCCAAGG 58.922 57.895 5.01 0.00 0.00 3.61
2773 6026 2.726351 GGCGACCCTCTTCCCAGAG 61.726 68.421 0.00 0.00 45.79 3.35
2774 6027 2.683933 GGCGACCCTCTTCCCAGA 60.684 66.667 0.00 0.00 0.00 3.86
2775 6028 4.148825 CGGCGACCCTCTTCCCAG 62.149 72.222 0.00 0.00 0.00 4.45
2779 6032 3.682292 AATGGCGGCGACCCTCTTC 62.682 63.158 11.74 0.00 0.00 2.87
2780 6033 2.764637 AAAATGGCGGCGACCCTCTT 62.765 55.000 11.74 0.00 0.00 2.85
2781 6034 3.268103 AAAATGGCGGCGACCCTCT 62.268 57.895 11.74 0.00 0.00 3.69
2782 6035 2.750237 AAAATGGCGGCGACCCTC 60.750 61.111 11.74 0.00 0.00 4.30
2783 6036 2.750237 GAAAATGGCGGCGACCCT 60.750 61.111 11.74 0.72 0.00 4.34
2784 6037 2.340328 AAGAAAATGGCGGCGACCC 61.340 57.895 11.74 2.76 0.00 4.46
2785 6038 1.154035 CAAGAAAATGGCGGCGACC 60.154 57.895 11.74 12.18 0.00 4.79
2786 6039 1.801512 GCAAGAAAATGGCGGCGAC 60.802 57.895 12.98 9.31 0.00 5.19
2787 6040 2.566010 GCAAGAAAATGGCGGCGA 59.434 55.556 12.98 0.00 0.00 5.54
2788 6041 2.506881 GGCAAGAAAATGGCGGCG 60.507 61.111 0.51 0.51 36.07 6.46
2792 6045 0.457337 CTGCTCGGCAAGAAAATGGC 60.457 55.000 0.35 0.00 38.41 4.40
2793 6046 0.457337 GCTGCTCGGCAAGAAAATGG 60.457 55.000 0.00 0.00 38.41 3.16
2794 6047 0.795735 CGCTGCTCGGCAAGAAAATG 60.796 55.000 0.00 0.00 38.41 2.32
2795 6048 1.503542 CGCTGCTCGGCAAGAAAAT 59.496 52.632 0.00 0.00 38.41 1.82
2796 6049 2.945984 CGCTGCTCGGCAAGAAAA 59.054 55.556 0.00 0.00 38.41 2.29
2797 6050 3.726517 GCGCTGCTCGGCAAGAAA 61.727 61.111 0.00 0.00 38.41 2.52
2819 6072 2.106332 ATCGATGGCGGACGAACC 59.894 61.111 0.00 0.00 41.65 3.62
2820 6073 2.237751 CCATCGATGGCGGACGAAC 61.238 63.158 30.53 0.00 41.75 3.95
2821 6074 2.106131 CCATCGATGGCGGACGAA 59.894 61.111 30.53 0.00 41.75 3.85
2822 6075 3.911698 CCCATCGATGGCGGACGA 61.912 66.667 34.77 0.00 46.70 4.20
2823 6076 4.969196 CCCCATCGATGGCGGACG 62.969 72.222 34.77 21.82 46.70 4.79
2824 6077 4.626081 CCCCCATCGATGGCGGAC 62.626 72.222 35.42 0.00 46.66 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.