Multiple sequence alignment - TraesCS5A01G306400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G306400 chr5A 100.000 2672 0 0 1 2672 516665734 516663063 0.000000e+00 4935.0
1 TraesCS5A01G306400 chr5A 92.006 2114 122 21 13 2089 516813879 516815982 0.000000e+00 2924.0
2 TraesCS5A01G306400 chr5A 87.597 1548 149 28 727 2247 515496353 515494822 0.000000e+00 1755.0
3 TraesCS5A01G306400 chr5A 84.200 519 64 13 196 707 515497834 515497327 3.090000e-134 488.0
4 TraesCS5A01G306400 chr5A 76.644 882 136 49 971 1824 519693966 519693127 8.840000e-115 424.0
5 TraesCS5A01G306400 chr5A 80.068 587 92 18 1272 1839 518412094 518412674 1.910000e-111 412.0
6 TraesCS5A01G306400 chr5A 87.187 359 24 6 2116 2458 516815965 516816317 3.230000e-104 388.0
7 TraesCS5A01G306400 chr5A 91.772 158 9 4 2515 2672 516929865 516930018 1.610000e-52 217.0
8 TraesCS5A01G306400 chr5B 88.605 1799 142 28 720 2498 490359755 490358000 0.000000e+00 2128.0
9 TraesCS5A01G306400 chr5B 83.389 1788 190 58 883 2605 490298430 490296685 0.000000e+00 1557.0
10 TraesCS5A01G306400 chr5B 95.082 122 5 1 748 869 490299317 490299197 9.760000e-45 191.0
11 TraesCS5A01G306400 chr5D 90.962 1206 91 13 874 2070 408742596 408741400 0.000000e+00 1607.0
12 TraesCS5A01G306400 chr5D 86.772 1459 141 35 716 2138 408660061 408658619 0.000000e+00 1578.0
13 TraesCS5A01G306400 chr5D 85.311 531 64 9 180 707 408743889 408743370 1.090000e-148 536.0
14 TraesCS5A01G306400 chr5D 83.843 458 44 13 2070 2512 408739655 408739213 2.480000e-110 409.0
15 TraesCS5A01G306400 chr5D 96.053 152 6 0 718 869 408742932 408742781 5.710000e-62 248.0
16 TraesCS5A01G306400 chr5D 81.250 128 20 2 2542 2668 56913606 56913730 1.690000e-17 100.0
17 TraesCS5A01G306400 chr3D 79.213 356 66 8 357 707 453106155 453106507 9.560000e-60 241.0
18 TraesCS5A01G306400 chr3D 75.852 352 47 15 359 707 328550398 328550082 7.710000e-31 145.0
19 TraesCS5A01G306400 chr2B 79.213 356 66 8 357 707 422511800 422512152 9.560000e-60 241.0
20 TraesCS5A01G306400 chr2B 79.848 263 37 6 1587 1847 665420013 665419765 7.600000e-41 178.0
21 TraesCS5A01G306400 chrUn 79.848 263 37 6 1587 1847 329014738 329014490 7.600000e-41 178.0
22 TraesCS5A01G306400 chr2A 80.237 253 36 5 1587 1839 697375779 697375541 7.600000e-41 178.0
23 TraesCS5A01G306400 chr6D 81.221 213 38 2 496 707 389587509 389587298 1.270000e-38 171.0
24 TraesCS5A01G306400 chr7A 75.731 342 74 7 368 701 545947050 545947390 2.130000e-36 163.0
25 TraesCS5A01G306400 chr6B 75.890 365 62 21 356 703 641909432 641909077 2.130000e-36 163.0
26 TraesCS5A01G306400 chr6B 78.472 144 28 3 561 702 671882086 671881944 1.020000e-14 91.6
27 TraesCS5A01G306400 chr3B 75.623 361 60 18 359 707 556520391 556520047 1.280000e-33 154.0
28 TraesCS5A01G306400 chr3B 77.186 263 52 7 421 679 70467112 70467370 2.140000e-31 147.0
29 TraesCS5A01G306400 chr3B 79.699 133 23 2 2542 2672 481628064 481627934 2.830000e-15 93.5
30 TraesCS5A01G306400 chr3A 78.613 173 31 6 359 529 443195968 443195800 2.810000e-20 110.0
31 TraesCS5A01G306400 chr2D 85.437 103 13 1 2541 2643 100951052 100951152 3.640000e-19 106.0
32 TraesCS5A01G306400 chr4A 80.000 135 22 4 2540 2672 632986337 632986206 7.870000e-16 95.3
33 TraesCS5A01G306400 chr7D 78.947 133 26 2 2540 2672 496108355 496108225 3.660000e-14 89.8
34 TraesCS5A01G306400 chr1D 78.626 131 15 5 2542 2670 46491705 46491586 1.030000e-09 75.0
35 TraesCS5A01G306400 chr1B 78.626 131 15 7 2542 2670 66517119 66517000 1.030000e-09 75.0
36 TraesCS5A01G306400 chr1A 77.099 131 17 7 2542 2670 46217036 46216917 2.220000e-06 63.9
37 TraesCS5A01G306400 chr1A 95.000 40 2 0 414 453 579322212 579322251 2.220000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G306400 chr5A 516663063 516665734 2671 True 4935.0 4935 100.00000 1 2672 1 chr5A.!!$R1 2671
1 TraesCS5A01G306400 chr5A 516813879 516816317 2438 False 1656.0 2924 89.59650 13 2458 2 chr5A.!!$F3 2445
2 TraesCS5A01G306400 chr5A 515494822 515497834 3012 True 1121.5 1755 85.89850 196 2247 2 chr5A.!!$R3 2051
3 TraesCS5A01G306400 chr5A 519693127 519693966 839 True 424.0 424 76.64400 971 1824 1 chr5A.!!$R2 853
4 TraesCS5A01G306400 chr5A 518412094 518412674 580 False 412.0 412 80.06800 1272 1839 1 chr5A.!!$F2 567
5 TraesCS5A01G306400 chr5B 490358000 490359755 1755 True 2128.0 2128 88.60500 720 2498 1 chr5B.!!$R1 1778
6 TraesCS5A01G306400 chr5B 490296685 490299317 2632 True 874.0 1557 89.23550 748 2605 2 chr5B.!!$R2 1857
7 TraesCS5A01G306400 chr5D 408658619 408660061 1442 True 1578.0 1578 86.77200 716 2138 1 chr5D.!!$R1 1422
8 TraesCS5A01G306400 chr5D 408739213 408743889 4676 True 700.0 1607 89.04225 180 2512 4 chr5D.!!$R2 2332

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
975 3083 0.106708 ACTTGCGAGTTCAAGGAGCA 59.893 50.0 0.0 0.0 45.72 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2518 6494 1.125093 TGTGTGTGTGTAGGGAGGGG 61.125 60.0 0.0 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 5.943416 TCGCAAAAAGAAGGAGAATGGATAA 59.057 36.000 0.00 0.00 0.00 1.75
110 111 6.811253 TGTAAATAGCAAATTGGTCGAAGT 57.189 33.333 0.00 0.00 0.00 3.01
113 114 5.464965 AATAGCAAATTGGTCGAAGTACG 57.535 39.130 0.00 0.00 44.09 3.67
380 386 1.075450 CTCCCTAACCCTAGGCGGT 60.075 63.158 2.05 0.00 43.25 5.68
400 406 1.965414 TAGGGCAAACTCTCCCATCA 58.035 50.000 0.00 0.00 45.07 3.07
407 413 3.823304 GCAAACTCTCCCATCAAGACTTT 59.177 43.478 0.00 0.00 0.00 2.66
437 443 2.998949 GTGGATTCGCCTCCCCTT 59.001 61.111 1.25 0.00 37.63 3.95
438 444 1.153147 GTGGATTCGCCTCCCCTTC 60.153 63.158 1.25 0.00 37.63 3.46
487 495 0.395724 GGGAATTCCGGTGGCTTCAT 60.396 55.000 18.30 0.00 36.71 2.57
490 498 2.369394 GAATTCCGGTGGCTTCATTCT 58.631 47.619 0.00 0.00 0.00 2.40
511 519 8.537858 CATTCTGGTTAGTAGTTTAGGTTAGGT 58.462 37.037 0.00 0.00 0.00 3.08
512 520 8.496534 TTCTGGTTAGTAGTTTAGGTTAGGTT 57.503 34.615 0.00 0.00 0.00 3.50
513 521 8.496534 TCTGGTTAGTAGTTTAGGTTAGGTTT 57.503 34.615 0.00 0.00 0.00 3.27
582 590 1.202769 TTCTAGTTTGTCCCCCGGGG 61.203 60.000 34.65 34.65 46.11 5.73
637 645 0.110056 TCGACGAAGCTCCAACGTAC 60.110 55.000 0.00 0.00 40.29 3.67
642 650 2.288579 ACGAAGCTCCAACGTACATTCA 60.289 45.455 6.46 0.00 38.47 2.57
658 666 3.769844 ACATTCATGTCGTCTCCTTAGGT 59.230 43.478 0.00 0.00 35.87 3.08
665 673 2.879646 GTCGTCTCCTTAGGTCGATGAT 59.120 50.000 14.52 0.00 34.23 2.45
869 2036 5.046591 AGAGACCATTTCCGTGAGATAAACA 60.047 40.000 0.00 0.00 0.00 2.83
870 2037 5.556915 AGACCATTTCCGTGAGATAAACAA 58.443 37.500 0.00 0.00 0.00 2.83
871 2038 5.411669 AGACCATTTCCGTGAGATAAACAAC 59.588 40.000 0.00 0.00 0.00 3.32
975 3083 0.106708 ACTTGCGAGTTCAAGGAGCA 59.893 50.000 0.00 0.00 45.72 4.26
1034 3142 3.465403 CTCCCCGTGCTCCTCCTG 61.465 72.222 0.00 0.00 0.00 3.86
1140 3255 1.637478 GCTTCTCCGAGACGTCGTCT 61.637 60.000 27.28 27.28 46.42 4.18
1568 3704 1.034292 GGCTCCATCCAGCACTTTCC 61.034 60.000 0.00 0.00 41.65 3.13
1904 4062 0.172578 CACGAGACAACTCCCGCATA 59.827 55.000 0.00 0.00 39.76 3.14
1905 4063 0.172803 ACGAGACAACTCCCGCATAC 59.827 55.000 0.00 0.00 39.76 2.39
1906 4064 0.866061 CGAGACAACTCCCGCATACG 60.866 60.000 0.00 0.00 39.76 3.06
1958 4129 2.430080 CTTTGCTGCGTGTCGTCCAC 62.430 60.000 0.00 0.00 40.89 4.02
2001 4199 7.775093 CCCATATATACCCATTGTGAATAGTGG 59.225 40.741 0.00 0.00 0.00 4.00
2013 4211 3.821033 GTGAATAGTGGCCAGTGAAAAGT 59.179 43.478 23.96 1.42 0.00 2.66
2085 6033 8.084590 ACTAGTGTTATGTGCTTGTTAAACTC 57.915 34.615 0.00 0.00 0.00 3.01
2226 6185 8.093307 GCTCCTAGAGATGAATCATGAATGTTA 58.907 37.037 0.00 0.00 0.00 2.41
2259 6226 7.918562 AGAGAACGAGCTTAAGATCAATCTAAC 59.081 37.037 19.99 10.94 35.76 2.34
2268 6235 2.630580 AGATCAATCTAACGGGCTCTCC 59.369 50.000 0.00 0.00 34.85 3.71
2275 6242 3.572642 TCTAACGGGCTCTCCATAATCA 58.427 45.455 0.00 0.00 34.36 2.57
2292 6259 7.822334 TCCATAATCAAATACATCGATGGTACC 59.178 37.037 28.09 4.43 35.22 3.34
2307 6274 3.488363 TGGTACCGCTGGTTTTGTTATT 58.512 40.909 7.57 0.00 37.09 1.40
2308 6275 4.649692 TGGTACCGCTGGTTTTGTTATTA 58.350 39.130 7.57 0.00 37.09 0.98
2309 6276 4.455190 TGGTACCGCTGGTTTTGTTATTAC 59.545 41.667 7.57 0.00 37.09 1.89
2310 6277 4.696877 GGTACCGCTGGTTTTGTTATTACT 59.303 41.667 0.00 0.00 37.09 2.24
2311 6278 4.759516 ACCGCTGGTTTTGTTATTACTG 57.240 40.909 0.00 0.00 27.29 2.74
2325 6292 7.966339 TGTTATTACTGTAGAAAGCTAGGGA 57.034 36.000 0.00 0.00 0.00 4.20
2390 6357 4.354087 AGTGGGGGAGTCAGAGTTAAAAAT 59.646 41.667 0.00 0.00 0.00 1.82
2514 6490 4.092116 AGACCTTTTGCTATATGCTCCC 57.908 45.455 0.00 0.00 43.37 4.30
2515 6491 3.459598 AGACCTTTTGCTATATGCTCCCA 59.540 43.478 0.00 0.00 43.37 4.37
2518 6494 2.656947 TTTGCTATATGCTCCCACCC 57.343 50.000 0.00 0.00 43.37 4.61
2520 6496 1.133809 TGCTATATGCTCCCACCCCC 61.134 60.000 0.00 0.00 43.37 5.40
2534 6510 3.400188 CCCCCTCCCTACACACAC 58.600 66.667 0.00 0.00 0.00 3.82
2535 6511 1.537889 CCCCCTCCCTACACACACA 60.538 63.158 0.00 0.00 0.00 3.72
2536 6512 1.677552 CCCCTCCCTACACACACAC 59.322 63.158 0.00 0.00 0.00 3.82
2537 6513 1.125093 CCCCTCCCTACACACACACA 61.125 60.000 0.00 0.00 0.00 3.72
2538 6514 0.984230 CCCTCCCTACACACACACAT 59.016 55.000 0.00 0.00 0.00 3.21
2617 6593 9.872757 AAGTGAACAAATATACACTAAAACACG 57.127 29.630 0.00 0.00 41.73 4.49
2618 6594 9.048446 AGTGAACAAATATACACTAAAACACGT 57.952 29.630 0.00 0.00 40.96 4.49
2619 6595 9.309796 GTGAACAAATATACACTAAAACACGTC 57.690 33.333 0.00 0.00 0.00 4.34
2620 6596 8.497554 TGAACAAATATACACTAAAACACGTCC 58.502 33.333 0.00 0.00 0.00 4.79
2621 6597 7.966246 ACAAATATACACTAAAACACGTCCA 57.034 32.000 0.00 0.00 0.00 4.02
2622 6598 8.556213 ACAAATATACACTAAAACACGTCCAT 57.444 30.769 0.00 0.00 0.00 3.41
2623 6599 9.656040 ACAAATATACACTAAAACACGTCCATA 57.344 29.630 0.00 0.00 0.00 2.74
2629 6605 7.766219 ACACTAAAACACGTCCATATATGTC 57.234 36.000 11.73 3.95 0.00 3.06
2630 6606 6.759827 ACACTAAAACACGTCCATATATGTCC 59.240 38.462 11.73 0.98 0.00 4.02
2631 6607 5.981315 ACTAAAACACGTCCATATATGTCCG 59.019 40.000 11.73 14.02 0.00 4.79
2632 6608 4.659111 AAACACGTCCATATATGTCCGA 57.341 40.909 21.25 7.05 0.00 4.55
2633 6609 4.866508 AACACGTCCATATATGTCCGAT 57.133 40.909 21.25 10.56 0.00 4.18
2634 6610 4.866508 ACACGTCCATATATGTCCGATT 57.133 40.909 21.25 9.45 0.00 3.34
2635 6611 4.806330 ACACGTCCATATATGTCCGATTC 58.194 43.478 21.25 0.38 0.00 2.52
2636 6612 4.279922 ACACGTCCATATATGTCCGATTCA 59.720 41.667 21.25 0.00 0.00 2.57
2637 6613 4.859245 CACGTCCATATATGTCCGATTCAG 59.141 45.833 21.25 2.06 0.00 3.02
2638 6614 4.765339 ACGTCCATATATGTCCGATTCAGA 59.235 41.667 21.25 4.06 0.00 3.27
2639 6615 5.243060 ACGTCCATATATGTCCGATTCAGAA 59.757 40.000 21.25 0.00 0.00 3.02
2640 6616 6.156519 CGTCCATATATGTCCGATTCAGAAA 58.843 40.000 11.73 0.00 0.00 2.52
2641 6617 6.645003 CGTCCATATATGTCCGATTCAGAAAA 59.355 38.462 11.73 0.00 0.00 2.29
2642 6618 7.170828 CGTCCATATATGTCCGATTCAGAAAAA 59.829 37.037 11.73 0.00 0.00 1.94
2643 6619 8.499162 GTCCATATATGTCCGATTCAGAAAAAG 58.501 37.037 11.73 0.00 0.00 2.27
2644 6620 7.661437 TCCATATATGTCCGATTCAGAAAAAGG 59.339 37.037 11.73 0.00 0.00 3.11
2645 6621 7.445402 CCATATATGTCCGATTCAGAAAAAGGT 59.555 37.037 11.73 0.00 0.00 3.50
2646 6622 8.840321 CATATATGTCCGATTCAGAAAAAGGTT 58.160 33.333 4.43 0.00 0.00 3.50
2648 6624 6.743575 ATGTCCGATTCAGAAAAAGGTTAG 57.256 37.500 0.00 0.00 0.00 2.34
2649 6625 5.617252 TGTCCGATTCAGAAAAAGGTTAGT 58.383 37.500 0.00 0.00 0.00 2.24
2650 6626 6.761312 TGTCCGATTCAGAAAAAGGTTAGTA 58.239 36.000 0.00 0.00 0.00 1.82
2651 6627 6.647895 TGTCCGATTCAGAAAAAGGTTAGTAC 59.352 38.462 0.00 0.00 0.00 2.73
2652 6628 6.647895 GTCCGATTCAGAAAAAGGTTAGTACA 59.352 38.462 0.00 0.00 0.00 2.90
2653 6629 7.333672 GTCCGATTCAGAAAAAGGTTAGTACAT 59.666 37.037 0.00 0.00 0.00 2.29
2654 6630 7.548075 TCCGATTCAGAAAAAGGTTAGTACATC 59.452 37.037 0.00 0.00 0.00 3.06
2655 6631 7.549488 CCGATTCAGAAAAAGGTTAGTACATCT 59.451 37.037 0.00 0.00 0.00 2.90
2656 6632 8.936864 CGATTCAGAAAAAGGTTAGTACATCTT 58.063 33.333 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.479972 TCTCCTTCTTTTTGCGAGGATATA 57.520 37.500 0.00 0.00 37.64 0.86
2 3 4.819105 TCTCCTTCTTTTTGCGAGGATA 57.181 40.909 0.00 0.00 37.64 2.59
4 5 3.485463 TTCTCCTTCTTTTTGCGAGGA 57.515 42.857 0.00 0.00 36.85 3.71
5 6 3.119708 CCATTCTCCTTCTTTTTGCGAGG 60.120 47.826 0.00 0.00 0.00 4.63
6 7 3.753272 TCCATTCTCCTTCTTTTTGCGAG 59.247 43.478 0.00 0.00 0.00 5.03
7 8 3.750371 TCCATTCTCCTTCTTTTTGCGA 58.250 40.909 0.00 0.00 0.00 5.10
8 9 4.708726 ATCCATTCTCCTTCTTTTTGCG 57.291 40.909 0.00 0.00 0.00 4.85
63 64 6.112927 TGCACATACTTATATCCATGCTCA 57.887 37.500 0.00 0.00 33.03 4.26
77 78 7.922278 CCAATTTGCTATTTACATGCACATACT 59.078 33.333 0.00 0.00 36.37 2.12
355 359 1.761198 CTAGGGTTAGGGAGGAAACGG 59.239 57.143 0.00 0.00 0.00 4.44
380 386 2.274542 TGATGGGAGAGTTTGCCCTAA 58.725 47.619 0.00 0.00 44.96 2.69
400 406 0.672711 GGGCTCGCCGTTAAAGTCTT 60.673 55.000 1.24 0.00 36.85 3.01
463 470 2.001269 CCACCGGAATTCCCCTCCT 61.001 63.158 19.01 0.00 0.00 3.69
487 495 8.496534 AACCTAACCTAAACTACTAACCAGAA 57.503 34.615 0.00 0.00 0.00 3.02
576 584 3.489513 GGAGGATTGGACCCCGGG 61.490 72.222 15.80 15.80 0.00 5.73
582 590 2.028020 ACAAACTCGAGGAGGATTGGAC 60.028 50.000 18.41 0.00 36.01 4.02
637 645 4.363999 GACCTAAGGAGACGACATGAATG 58.636 47.826 0.00 0.00 0.00 2.67
642 650 2.414994 TCGACCTAAGGAGACGACAT 57.585 50.000 0.00 0.00 0.00 3.06
658 666 3.446161 ACGAGAAACCCTAACATCATCGA 59.554 43.478 0.00 0.00 0.00 3.59
665 673 3.322541 TCACATGACGAGAAACCCTAACA 59.677 43.478 0.00 0.00 0.00 2.41
697 705 2.979678 ACTAAACCTCACCACCTGACAT 59.020 45.455 0.00 0.00 0.00 3.06
869 2036 2.481449 GGTTGAGACCTCGCATATCGTT 60.481 50.000 0.00 0.00 42.99 3.85
870 2037 1.067212 GGTTGAGACCTCGCATATCGT 59.933 52.381 0.00 0.00 42.99 3.73
871 2038 1.772182 GGTTGAGACCTCGCATATCG 58.228 55.000 0.00 0.00 42.99 2.92
1055 3163 2.166130 TTGATGCTCGAACTGGCCGA 62.166 55.000 0.00 0.00 34.61 5.54
1242 3360 4.773117 GGCGTCGACTCCGTGGAC 62.773 72.222 14.70 0.00 37.79 4.02
1521 3642 3.962557 CCGAGGGAGGCTGATCTT 58.037 61.111 0.00 0.00 0.00 2.40
1550 3686 0.322816 TGGAAAGTGCTGGATGGAGC 60.323 55.000 0.00 0.00 39.62 4.70
1555 3691 1.377725 CGGCTGGAAAGTGCTGGAT 60.378 57.895 0.00 0.00 32.37 3.41
1585 3721 1.303236 CCACCATCCGCACTTCCAA 60.303 57.895 0.00 0.00 0.00 3.53
1658 3795 3.531207 CTCATCAGGCTCGCCGGA 61.531 66.667 12.97 12.97 43.88 5.14
1904 4062 1.889105 GCATGGCATCCATCGTCGT 60.889 57.895 0.00 0.00 43.15 4.34
1905 4063 1.888638 TGCATGGCATCCATCGTCG 60.889 57.895 0.00 0.00 43.15 5.12
1906 4064 4.146058 TGCATGGCATCCATCGTC 57.854 55.556 0.00 0.00 43.15 4.20
2001 4199 6.273071 AGATACAAACAAACTTTTCACTGGC 58.727 36.000 0.00 0.00 0.00 4.85
2013 4211 9.146984 CTCAATCCGTAAGTAGATACAAACAAA 57.853 33.333 0.00 0.00 0.00 2.83
2109 6057 7.822822 ACACAATAGTATAACAAACACTCTCCC 59.177 37.037 0.00 0.00 0.00 4.30
2226 6185 6.342338 TCTTAAGCTCGTTCTCTTTAACCT 57.658 37.500 0.00 0.00 0.00 3.50
2231 6190 7.327214 AGATTGATCTTAAGCTCGTTCTCTTT 58.673 34.615 0.00 0.00 31.97 2.52
2259 6226 4.641396 TGTATTTGATTATGGAGAGCCCG 58.359 43.478 0.00 0.00 37.93 6.13
2268 6235 7.674008 GCGGTACCATCGATGTATTTGATTATG 60.674 40.741 23.27 6.51 0.00 1.90
2275 6242 3.390135 CAGCGGTACCATCGATGTATTT 58.610 45.455 23.27 7.81 38.91 1.40
2292 6259 6.715344 TCTACAGTAATAACAAAACCAGCG 57.285 37.500 0.00 0.00 0.00 5.18
2325 6292 4.783055 TCTACCTGAATCGAAGAGCTAGT 58.217 43.478 0.00 0.00 43.63 2.57
2365 6332 1.821088 AACTCTGACTCCCCCACTTT 58.179 50.000 0.00 0.00 0.00 2.66
2390 6357 8.310382 GCATGAGAGAAATAAGCTAGAATCCTA 58.690 37.037 0.00 0.00 0.00 2.94
2399 6367 5.412594 TCGTTTTGCATGAGAGAAATAAGCT 59.587 36.000 0.00 0.00 0.00 3.74
2404 6372 6.506500 AGATTCGTTTTGCATGAGAGAAAT 57.493 33.333 0.00 0.00 0.00 2.17
2474 6450 4.518970 GGTCTTGCAGTGACTAAAAATCCA 59.481 41.667 17.46 0.00 35.04 3.41
2518 6494 1.125093 TGTGTGTGTGTAGGGAGGGG 61.125 60.000 0.00 0.00 0.00 4.79
2520 6496 3.973206 TTATGTGTGTGTGTAGGGAGG 57.027 47.619 0.00 0.00 0.00 4.30
2521 6497 9.607988 TTATAATTTATGTGTGTGTGTAGGGAG 57.392 33.333 0.00 0.00 0.00 4.30
2523 6499 9.607988 TCTTATAATTTATGTGTGTGTGTAGGG 57.392 33.333 0.00 0.00 0.00 3.53
2592 6568 9.048446 ACGTGTTTTAGTGTATATTTGTTCACT 57.952 29.630 0.00 0.00 42.56 3.41
2605 6581 6.759827 GGACATATATGGACGTGTTTTAGTGT 59.240 38.462 16.96 0.00 0.00 3.55
2606 6582 6.074516 CGGACATATATGGACGTGTTTTAGTG 60.075 42.308 16.96 0.00 0.00 2.74
2607 6583 5.981315 CGGACATATATGGACGTGTTTTAGT 59.019 40.000 16.96 0.00 0.00 2.24
2608 6584 6.210796 TCGGACATATATGGACGTGTTTTAG 58.789 40.000 22.32 2.41 34.31 1.85
2609 6585 6.146601 TCGGACATATATGGACGTGTTTTA 57.853 37.500 22.32 7.30 34.31 1.52
2610 6586 5.013568 TCGGACATATATGGACGTGTTTT 57.986 39.130 22.32 0.13 34.31 2.43
2611 6587 4.659111 TCGGACATATATGGACGTGTTT 57.341 40.909 22.32 0.74 34.31 2.83
2612 6588 4.866508 ATCGGACATATATGGACGTGTT 57.133 40.909 22.32 11.67 34.31 3.32
2613 6589 4.279922 TGAATCGGACATATATGGACGTGT 59.720 41.667 22.32 15.10 34.31 4.49
2614 6590 4.805219 TGAATCGGACATATATGGACGTG 58.195 43.478 22.32 11.30 34.31 4.49
2615 6591 4.765339 TCTGAATCGGACATATATGGACGT 59.235 41.667 22.32 10.78 34.31 4.34
2616 6592 5.310720 TCTGAATCGGACATATATGGACG 57.689 43.478 16.96 18.27 34.07 4.79
2617 6593 7.962964 TTTTCTGAATCGGACATATATGGAC 57.037 36.000 16.96 10.01 0.00 4.02
2618 6594 7.661437 CCTTTTTCTGAATCGGACATATATGGA 59.339 37.037 16.96 5.27 0.00 3.41
2619 6595 7.445402 ACCTTTTTCTGAATCGGACATATATGG 59.555 37.037 16.96 0.00 0.00 2.74
2620 6596 8.383318 ACCTTTTTCTGAATCGGACATATATG 57.617 34.615 11.29 11.29 0.00 1.78
2621 6597 8.980481 AACCTTTTTCTGAATCGGACATATAT 57.020 30.769 0.00 0.00 0.00 0.86
2622 6598 9.542462 CTAACCTTTTTCTGAATCGGACATATA 57.458 33.333 0.00 0.00 0.00 0.86
2623 6599 8.047310 ACTAACCTTTTTCTGAATCGGACATAT 58.953 33.333 0.00 0.00 0.00 1.78
2624 6600 7.391620 ACTAACCTTTTTCTGAATCGGACATA 58.608 34.615 0.00 0.00 0.00 2.29
2625 6601 6.238648 ACTAACCTTTTTCTGAATCGGACAT 58.761 36.000 0.00 0.00 0.00 3.06
2626 6602 5.617252 ACTAACCTTTTTCTGAATCGGACA 58.383 37.500 0.00 0.00 0.00 4.02
2627 6603 6.647895 TGTACTAACCTTTTTCTGAATCGGAC 59.352 38.462 0.00 0.00 0.00 4.79
2628 6604 6.761312 TGTACTAACCTTTTTCTGAATCGGA 58.239 36.000 0.00 0.00 0.00 4.55
2629 6605 7.549488 AGATGTACTAACCTTTTTCTGAATCGG 59.451 37.037 0.00 0.00 0.00 4.18
2630 6606 8.480643 AGATGTACTAACCTTTTTCTGAATCG 57.519 34.615 0.00 0.00 0.00 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.