Multiple sequence alignment - TraesCS5A01G305700
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5A01G305700 | chr5A | 100.000 | 3950 | 0 | 0 | 1 | 3950 | 514189180 | 514193129 | 0.000000e+00 | 7295.0 |
1 | TraesCS5A01G305700 | chr5A | 89.091 | 495 | 52 | 2 | 3443 | 3937 | 514263482 | 514263974 | 7.250000e-172 | 614.0 |
2 | TraesCS5A01G305700 | chr5A | 95.588 | 68 | 3 | 0 | 3407 | 3474 | 514261302 | 514261369 | 4.170000e-20 | 110.0 |
3 | TraesCS5A01G305700 | chr5A | 85.714 | 77 | 5 | 5 | 2439 | 2511 | 580685574 | 580685648 | 4.230000e-10 | 76.8 |
4 | TraesCS5A01G305700 | chr5D | 95.101 | 2470 | 83 | 9 | 1 | 2435 | 408340057 | 408342523 | 0.000000e+00 | 3856.0 |
5 | TraesCS5A01G305700 | chr5D | 89.598 | 1317 | 113 | 10 | 2624 | 3937 | 408342578 | 408343873 | 0.000000e+00 | 1652.0 |
6 | TraesCS5A01G305700 | chr5B | 89.502 | 1848 | 147 | 18 | 624 | 2435 | 489842865 | 489844701 | 0.000000e+00 | 2294.0 |
7 | TraesCS5A01G305700 | chr5B | 90.737 | 1317 | 111 | 8 | 2624 | 3937 | 489844756 | 489846064 | 0.000000e+00 | 1746.0 |
8 | TraesCS5A01G305700 | chr5B | 91.071 | 56 | 4 | 1 | 2439 | 2493 | 622135525 | 622135470 | 1.520000e-09 | 75.0 |
9 | TraesCS5A01G305700 | chr3B | 79.074 | 1123 | 194 | 31 | 2789 | 3879 | 17597801 | 17596688 | 0.000000e+00 | 734.0 |
10 | TraesCS5A01G305700 | chr3B | 79.189 | 1110 | 185 | 33 | 2790 | 3864 | 18246268 | 18247366 | 0.000000e+00 | 728.0 |
11 | TraesCS5A01G305700 | chr3D | 78.915 | 1124 | 194 | 26 | 2789 | 3879 | 12240282 | 12239169 | 0.000000e+00 | 723.0 |
12 | TraesCS5A01G305700 | chr3D | 86.486 | 74 | 9 | 1 | 2439 | 2511 | 27938175 | 27938248 | 3.270000e-11 | 80.5 |
13 | TraesCS5A01G305700 | chr3A | 77.516 | 1103 | 221 | 13 | 2784 | 3862 | 31928944 | 31930043 | 4.300000e-179 | 638.0 |
14 | TraesCS5A01G305700 | chr7D | 75.993 | 1108 | 204 | 33 | 2790 | 3866 | 603668718 | 603667642 | 2.100000e-142 | 516.0 |
15 | TraesCS5A01G305700 | chrUn | 76.815 | 496 | 111 | 4 | 1192 | 1684 | 20586244 | 20586738 | 3.890000e-70 | 276.0 |
16 | TraesCS5A01G305700 | chr1B | 86.076 | 79 | 9 | 2 | 2441 | 2517 | 3656267 | 3656345 | 2.530000e-12 | 84.2 |
17 | TraesCS5A01G305700 | chr1B | 91.071 | 56 | 4 | 1 | 2439 | 2493 | 163666819 | 163666764 | 1.520000e-09 | 75.0 |
18 | TraesCS5A01G305700 | chr7B | 86.486 | 74 | 7 | 3 | 2439 | 2510 | 730208548 | 730208620 | 1.180000e-10 | 78.7 |
19 | TraesCS5A01G305700 | chr7B | 78.947 | 114 | 22 | 2 | 2793 | 2905 | 593293531 | 593293643 | 4.230000e-10 | 76.8 |
20 | TraesCS5A01G305700 | chr6B | 91.071 | 56 | 4 | 1 | 2439 | 2493 | 680530879 | 680530824 | 1.520000e-09 | 75.0 |
21 | TraesCS5A01G305700 | chr1A | 91.071 | 56 | 4 | 1 | 2439 | 2493 | 24139851 | 24139906 | 1.520000e-09 | 75.0 |
22 | TraesCS5A01G305700 | chr1A | 91.071 | 56 | 4 | 1 | 2439 | 2493 | 202293579 | 202293524 | 1.520000e-09 | 75.0 |
23 | TraesCS5A01G305700 | chr7A | 77.876 | 113 | 21 | 4 | 2795 | 2905 | 634875464 | 634875574 | 2.550000e-07 | 67.6 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5A01G305700 | chr5A | 514189180 | 514193129 | 3949 | False | 7295 | 7295 | 100.0000 | 1 | 3950 | 1 | chr5A.!!$F1 | 3949 |
1 | TraesCS5A01G305700 | chr5A | 514261302 | 514263974 | 2672 | False | 362 | 614 | 92.3395 | 3407 | 3937 | 2 | chr5A.!!$F3 | 530 |
2 | TraesCS5A01G305700 | chr5D | 408340057 | 408343873 | 3816 | False | 2754 | 3856 | 92.3495 | 1 | 3937 | 2 | chr5D.!!$F1 | 3936 |
3 | TraesCS5A01G305700 | chr5B | 489842865 | 489846064 | 3199 | False | 2020 | 2294 | 90.1195 | 624 | 3937 | 2 | chr5B.!!$F1 | 3313 |
4 | TraesCS5A01G305700 | chr3B | 17596688 | 17597801 | 1113 | True | 734 | 734 | 79.0740 | 2789 | 3879 | 1 | chr3B.!!$R1 | 1090 |
5 | TraesCS5A01G305700 | chr3B | 18246268 | 18247366 | 1098 | False | 728 | 728 | 79.1890 | 2790 | 3864 | 1 | chr3B.!!$F1 | 1074 |
6 | TraesCS5A01G305700 | chr3D | 12239169 | 12240282 | 1113 | True | 723 | 723 | 78.9150 | 2789 | 3879 | 1 | chr3D.!!$R1 | 1090 |
7 | TraesCS5A01G305700 | chr3A | 31928944 | 31930043 | 1099 | False | 638 | 638 | 77.5160 | 2784 | 3862 | 1 | chr3A.!!$F1 | 1078 |
8 | TraesCS5A01G305700 | chr7D | 603667642 | 603668718 | 1076 | True | 516 | 516 | 75.9930 | 2790 | 3866 | 1 | chr7D.!!$R1 | 1076 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
462 | 463 | 0.546122 | ACAAGTCTGTGACAAGGGCA | 59.454 | 50.0 | 0.46 | 0.0 | 34.6 | 5.36 | F |
1304 | 1305 | 0.486879 | AAGGATGGGCTTTTGGGTGA | 59.513 | 50.0 | 0.00 | 0.0 | 0.0 | 4.02 | F |
2464 | 2501 | 0.104409 | AAGTGGTCAGACCCTTCCCT | 60.104 | 55.0 | 17.59 | 2.4 | 37.5 | 4.20 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1517 | 1518 | 0.179089 | CTCCATCCTCAGCAACTCGG | 60.179 | 60.0 | 0.00 | 0.0 | 0.00 | 4.63 | R |
2467 | 2504 | 0.033405 | TAGTTCCCTCTAGCGCAGGT | 60.033 | 55.0 | 11.47 | 0.0 | 44.89 | 4.00 | R |
3886 | 6114 | 0.613260 | AAGTAGCGAACATCCAGCCA | 59.387 | 50.0 | 0.00 | 0.0 | 0.00 | 4.75 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
212 | 213 | 5.279384 | GTCTCGACTTGACTTGTCACTTAA | 58.721 | 41.667 | 2.62 | 0.00 | 34.37 | 1.85 |
253 | 254 | 7.335171 | TCGAGACATTGTCAAGATGATGATTTT | 59.665 | 33.333 | 18.57 | 0.00 | 34.60 | 1.82 |
254 | 255 | 7.966753 | CGAGACATTGTCAAGATGATGATTTTT | 59.033 | 33.333 | 18.57 | 0.00 | 34.60 | 1.94 |
282 | 283 | 1.935873 | CACAGCACCGTATCAAGATGG | 59.064 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
462 | 463 | 0.546122 | ACAAGTCTGTGACAAGGGCA | 59.454 | 50.000 | 0.46 | 0.00 | 34.60 | 5.36 |
478 | 479 | 4.436113 | AGGGCAAATGTTGATTTTGGTT | 57.564 | 36.364 | 0.00 | 0.00 | 35.18 | 3.67 |
813 | 814 | 7.608153 | TCGTCACAAGGATAATCAAGTTTAGA | 58.392 | 34.615 | 0.00 | 0.00 | 0.00 | 2.10 |
896 | 897 | 1.891150 | CTTTGCAATGACCAGCCTCTT | 59.109 | 47.619 | 6.48 | 0.00 | 0.00 | 2.85 |
915 | 916 | 3.199946 | TCTTCCCATACCACTTGACATCC | 59.800 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
949 | 950 | 0.947244 | CCAAAGCCTCACACACAGTC | 59.053 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
963 | 964 | 6.070481 | TCACACACAGTCCATAAGGCTATTTA | 60.070 | 38.462 | 0.00 | 0.00 | 33.74 | 1.40 |
989 | 990 | 3.569701 | TGCTTGATTGTGGGAAAGAAGAC | 59.430 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
1085 | 1086 | 3.594134 | CCTTGCTGGAGAAGAAGTACAG | 58.406 | 50.000 | 0.00 | 0.00 | 38.35 | 2.74 |
1289 | 1290 | 1.839354 | TGATAGTGCTGATGCCAAGGA | 59.161 | 47.619 | 0.00 | 0.00 | 38.71 | 3.36 |
1304 | 1305 | 0.486879 | AAGGATGGGCTTTTGGGTGA | 59.513 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1344 | 1345 | 5.171476 | GCTCACTACAAGATTGCTAACAGA | 58.829 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
1347 | 1348 | 7.148340 | GCTCACTACAAGATTGCTAACAGAATT | 60.148 | 37.037 | 0.00 | 0.00 | 0.00 | 2.17 |
1356 | 1357 | 8.038492 | AGATTGCTAACAGAATTGAAGAACTC | 57.962 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
1517 | 1518 | 0.521735 | CGCCCAAAGGACAAGCTTAC | 59.478 | 55.000 | 0.00 | 0.00 | 33.47 | 2.34 |
1676 | 1677 | 2.472695 | TCGGTGTCTCAAAATCCCAG | 57.527 | 50.000 | 0.00 | 0.00 | 0.00 | 4.45 |
1681 | 1682 | 4.562757 | CGGTGTCTCAAAATCCCAGTCTTA | 60.563 | 45.833 | 0.00 | 0.00 | 0.00 | 2.10 |
1818 | 1819 | 5.651576 | TGCTCCTATGACTAGATCAGCTATG | 59.348 | 44.000 | 0.00 | 0.00 | 41.91 | 2.23 |
1883 | 1884 | 8.652290 | GGATAACCTCCATAGAATTGACTAGTT | 58.348 | 37.037 | 0.00 | 0.00 | 44.26 | 2.24 |
1909 | 1910 | 8.934507 | AAGTACTATCACTTCTTTATCTGTGC | 57.065 | 34.615 | 0.00 | 0.00 | 33.41 | 4.57 |
1941 | 1942 | 1.122227 | ACATTTGCATGGCCCCATAC | 58.878 | 50.000 | 0.00 | 0.00 | 34.91 | 2.39 |
2000 | 2023 | 2.403252 | ATCGAACTACTTGGGCTTGG | 57.597 | 50.000 | 0.00 | 0.00 | 0.00 | 3.61 |
2013 | 2036 | 1.072173 | GGGCTTGGTCATTTTTGCCTT | 59.928 | 47.619 | 0.00 | 0.00 | 40.15 | 4.35 |
2014 | 2037 | 2.487086 | GGGCTTGGTCATTTTTGCCTTT | 60.487 | 45.455 | 0.00 | 0.00 | 40.15 | 3.11 |
2160 | 2184 | 2.047844 | CACCAGAGAGCACCACCG | 60.048 | 66.667 | 0.00 | 0.00 | 0.00 | 4.94 |
2230 | 2264 | 1.265365 | GACTTTGAGCACAGAAGGCAC | 59.735 | 52.381 | 6.91 | 0.00 | 0.00 | 5.01 |
2238 | 2273 | 3.165875 | AGCACAGAAGGCACTACTTAGA | 58.834 | 45.455 | 0.00 | 0.00 | 38.49 | 2.10 |
2247 | 2282 | 2.418884 | GGCACTACTTAGAAGTGGAGGC | 60.419 | 54.545 | 12.18 | 12.18 | 43.71 | 4.70 |
2257 | 2292 | 3.418684 | GAAGTGGAGGCCTAAACTTCA | 57.581 | 47.619 | 34.51 | 15.76 | 45.05 | 3.02 |
2272 | 2307 | 8.082242 | GCCTAAACTTCACTGTCATTTATGTTT | 58.918 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
2274 | 2309 | 9.612620 | CTAAACTTCACTGTCATTTATGTTTCC | 57.387 | 33.333 | 0.00 | 0.00 | 0.00 | 3.13 |
2278 | 2313 | 8.641541 | ACTTCACTGTCATTTATGTTTCCAAAT | 58.358 | 29.630 | 0.00 | 0.00 | 0.00 | 2.32 |
2280 | 2315 | 8.815141 | TCACTGTCATTTATGTTTCCAAATTG | 57.185 | 30.769 | 0.00 | 0.00 | 0.00 | 2.32 |
2345 | 2381 | 8.545229 | AACTTCTGATCAGAATTACTCAAGTG | 57.455 | 34.615 | 32.75 | 20.83 | 45.40 | 3.16 |
2348 | 2384 | 7.244886 | TCTGATCAGAATTACTCAAGTGGAA | 57.755 | 36.000 | 23.17 | 0.00 | 33.91 | 3.53 |
2349 | 2385 | 7.855375 | TCTGATCAGAATTACTCAAGTGGAAT | 58.145 | 34.615 | 23.17 | 0.00 | 33.91 | 3.01 |
2354 | 2390 | 9.739276 | ATCAGAATTACTCAAGTGGAATTTACA | 57.261 | 29.630 | 0.00 | 0.00 | 0.00 | 2.41 |
2364 | 2401 | 9.831737 | CTCAAGTGGAATTTACAAGTAATCAAG | 57.168 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
2386 | 2423 | 8.239314 | TCAAGATTCAAACTAAGCTGCAATTAG | 58.761 | 33.333 | 14.03 | 14.03 | 36.51 | 1.73 |
2388 | 2425 | 8.340618 | AGATTCAAACTAAGCTGCAATTAGAA | 57.659 | 30.769 | 19.92 | 8.47 | 34.86 | 2.10 |
2450 | 2487 | 3.754965 | TCTCAATTGAGACCCAAAGTGG | 58.245 | 45.455 | 30.05 | 5.43 | 45.48 | 4.00 |
2451 | 2488 | 3.138283 | TCTCAATTGAGACCCAAAGTGGT | 59.862 | 43.478 | 30.05 | 0.00 | 45.48 | 4.16 |
2458 | 2495 | 1.844130 | ACCCAAAGTGGTCAGACCC | 59.156 | 57.895 | 17.59 | 8.45 | 37.50 | 4.46 |
2459 | 2496 | 0.697854 | ACCCAAAGTGGTCAGACCCT | 60.698 | 55.000 | 17.59 | 10.65 | 37.50 | 4.34 |
2460 | 2497 | 0.478507 | CCCAAAGTGGTCAGACCCTT | 59.521 | 55.000 | 17.59 | 15.76 | 37.50 | 3.95 |
2461 | 2498 | 1.545651 | CCCAAAGTGGTCAGACCCTTC | 60.546 | 57.143 | 17.59 | 7.68 | 37.50 | 3.46 |
2462 | 2499 | 1.545651 | CCAAAGTGGTCAGACCCTTCC | 60.546 | 57.143 | 17.59 | 2.54 | 37.50 | 3.46 |
2463 | 2500 | 0.771755 | AAAGTGGTCAGACCCTTCCC | 59.228 | 55.000 | 17.59 | 0.05 | 37.50 | 3.97 |
2464 | 2501 | 0.104409 | AAGTGGTCAGACCCTTCCCT | 60.104 | 55.000 | 17.59 | 2.40 | 37.50 | 4.20 |
2465 | 2502 | 0.838122 | AGTGGTCAGACCCTTCCCTG | 60.838 | 60.000 | 17.59 | 0.00 | 37.50 | 4.45 |
2466 | 2503 | 1.538876 | TGGTCAGACCCTTCCCTGG | 60.539 | 63.158 | 17.59 | 0.00 | 37.50 | 4.45 |
2467 | 2504 | 1.229529 | GGTCAGACCCTTCCCTGGA | 60.230 | 63.158 | 8.65 | 0.00 | 30.04 | 3.86 |
2468 | 2505 | 1.554583 | GGTCAGACCCTTCCCTGGAC | 61.555 | 65.000 | 8.65 | 0.00 | 30.04 | 4.02 |
2469 | 2506 | 1.229529 | TCAGACCCTTCCCTGGACC | 60.230 | 63.158 | 0.00 | 0.00 | 0.00 | 4.46 |
2470 | 2507 | 1.229658 | CAGACCCTTCCCTGGACCT | 60.230 | 63.158 | 0.00 | 0.00 | 0.00 | 3.85 |
2471 | 2508 | 1.229658 | AGACCCTTCCCTGGACCTG | 60.230 | 63.158 | 0.00 | 0.00 | 0.00 | 4.00 |
2472 | 2509 | 2.936032 | ACCCTTCCCTGGACCTGC | 60.936 | 66.667 | 0.00 | 0.00 | 0.00 | 4.85 |
2473 | 2510 | 4.101448 | CCCTTCCCTGGACCTGCG | 62.101 | 72.222 | 0.00 | 0.00 | 0.00 | 5.18 |
2474 | 2511 | 4.785453 | CCTTCCCTGGACCTGCGC | 62.785 | 72.222 | 0.00 | 0.00 | 0.00 | 6.09 |
2475 | 2512 | 3.710722 | CTTCCCTGGACCTGCGCT | 61.711 | 66.667 | 9.73 | 0.00 | 0.00 | 5.92 |
2476 | 2513 | 2.284331 | TTCCCTGGACCTGCGCTA | 60.284 | 61.111 | 9.73 | 0.00 | 0.00 | 4.26 |
2477 | 2514 | 2.303549 | CTTCCCTGGACCTGCGCTAG | 62.304 | 65.000 | 9.73 | 4.25 | 0.00 | 3.42 |
2478 | 2515 | 2.759973 | CCCTGGACCTGCGCTAGA | 60.760 | 66.667 | 9.73 | 0.00 | 0.00 | 2.43 |
2479 | 2516 | 2.790791 | CCCTGGACCTGCGCTAGAG | 61.791 | 68.421 | 9.73 | 0.00 | 0.00 | 2.43 |
2480 | 2517 | 2.790791 | CCTGGACCTGCGCTAGAGG | 61.791 | 68.421 | 9.73 | 10.21 | 36.57 | 3.69 |
2481 | 2518 | 2.759973 | TGGACCTGCGCTAGAGGG | 60.760 | 66.667 | 15.94 | 9.24 | 34.56 | 4.30 |
2482 | 2519 | 2.442272 | GGACCTGCGCTAGAGGGA | 60.442 | 66.667 | 15.94 | 0.00 | 34.56 | 4.20 |
2483 | 2520 | 2.058595 | GGACCTGCGCTAGAGGGAA | 61.059 | 63.158 | 15.94 | 0.00 | 34.56 | 3.97 |
2484 | 2521 | 1.142097 | GACCTGCGCTAGAGGGAAC | 59.858 | 63.158 | 15.94 | 4.40 | 34.56 | 3.62 |
2486 | 2523 | 0.033405 | ACCTGCGCTAGAGGGAACTA | 60.033 | 55.000 | 15.94 | 0.00 | 44.43 | 2.24 |
2487 | 2524 | 0.386113 | CCTGCGCTAGAGGGAACTAC | 59.614 | 60.000 | 9.73 | 0.00 | 44.43 | 2.73 |
2488 | 2525 | 0.386113 | CTGCGCTAGAGGGAACTACC | 59.614 | 60.000 | 9.73 | 0.00 | 44.43 | 3.18 |
2489 | 2526 | 0.033405 | TGCGCTAGAGGGAACTACCT | 60.033 | 55.000 | 9.73 | 0.00 | 44.43 | 3.08 |
2490 | 2527 | 0.386113 | GCGCTAGAGGGAACTACCTG | 59.614 | 60.000 | 0.00 | 0.00 | 44.43 | 4.00 |
2491 | 2528 | 0.386113 | CGCTAGAGGGAACTACCTGC | 59.614 | 60.000 | 0.00 | 0.00 | 44.43 | 4.85 |
2492 | 2529 | 1.486211 | GCTAGAGGGAACTACCTGCA | 58.514 | 55.000 | 0.00 | 0.00 | 44.43 | 4.41 |
2493 | 2530 | 2.043227 | GCTAGAGGGAACTACCTGCAT | 58.957 | 52.381 | 0.00 | 0.00 | 44.43 | 3.96 |
2494 | 2531 | 2.036604 | GCTAGAGGGAACTACCTGCATC | 59.963 | 54.545 | 0.00 | 0.00 | 44.43 | 3.91 |
2495 | 2532 | 1.115467 | AGAGGGAACTACCTGCATCG | 58.885 | 55.000 | 0.00 | 0.00 | 44.43 | 3.84 |
2496 | 2533 | 0.105039 | GAGGGAACTACCTGCATCGG | 59.895 | 60.000 | 0.00 | 0.00 | 44.43 | 4.18 |
2497 | 2534 | 1.146263 | GGGAACTACCTGCATCGGG | 59.854 | 63.158 | 0.00 | 0.00 | 38.98 | 5.14 |
2498 | 2535 | 1.523938 | GGAACTACCTGCATCGGGC | 60.524 | 63.158 | 0.00 | 0.00 | 45.13 | 6.13 |
2499 | 2536 | 1.523938 | GAACTACCTGCATCGGGCC | 60.524 | 63.158 | 0.00 | 0.00 | 43.89 | 5.80 |
2500 | 2537 | 3.385749 | AACTACCTGCATCGGGCCG | 62.386 | 63.158 | 22.51 | 22.51 | 43.89 | 6.13 |
2505 | 2542 | 3.520862 | CTGCATCGGGCCGCATTT | 61.521 | 61.111 | 23.83 | 2.49 | 43.89 | 2.32 |
2506 | 2543 | 3.067439 | TGCATCGGGCCGCATTTT | 61.067 | 55.556 | 23.83 | 0.00 | 43.89 | 1.82 |
2507 | 2544 | 2.184066 | GCATCGGGCCGCATTTTT | 59.816 | 55.556 | 23.83 | 0.00 | 36.11 | 1.94 |
2543 | 2580 | 3.764972 | TCTCAATCATGCATGCTGGAAAA | 59.235 | 39.130 | 22.25 | 2.92 | 0.00 | 2.29 |
2544 | 2581 | 4.221041 | TCTCAATCATGCATGCTGGAAAAA | 59.779 | 37.500 | 22.25 | 2.12 | 0.00 | 1.94 |
2548 | 2585 | 4.811969 | TCATGCATGCTGGAAAAATTCT | 57.188 | 36.364 | 22.25 | 0.00 | 0.00 | 2.40 |
2557 | 2594 | 5.385198 | TGCTGGAAAAATTCTAGTGGTCTT | 58.615 | 37.500 | 5.54 | 0.00 | 40.08 | 3.01 |
2558 | 2595 | 5.833131 | TGCTGGAAAAATTCTAGTGGTCTTT | 59.167 | 36.000 | 5.54 | 0.00 | 40.08 | 2.52 |
2559 | 2596 | 6.323739 | TGCTGGAAAAATTCTAGTGGTCTTTT | 59.676 | 34.615 | 5.54 | 0.00 | 40.08 | 2.27 |
2560 | 2597 | 7.147742 | TGCTGGAAAAATTCTAGTGGTCTTTTT | 60.148 | 33.333 | 5.54 | 0.00 | 40.08 | 1.94 |
2583 | 2620 | 5.705609 | TTTTCTTAACCATGCAGGAGAAC | 57.294 | 39.130 | 0.00 | 0.00 | 41.22 | 3.01 |
2584 | 2621 | 4.640771 | TTCTTAACCATGCAGGAGAACT | 57.359 | 40.909 | 0.00 | 0.00 | 41.22 | 3.01 |
2598 | 2635 | 6.422776 | CAGGAGAACTGCACGTATAAAATT | 57.577 | 37.500 | 0.00 | 0.00 | 40.97 | 1.82 |
2599 | 2636 | 6.478588 | CAGGAGAACTGCACGTATAAAATTC | 58.521 | 40.000 | 0.00 | 0.00 | 40.97 | 2.17 |
2600 | 2637 | 5.585047 | AGGAGAACTGCACGTATAAAATTCC | 59.415 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2601 | 2638 | 5.353123 | GGAGAACTGCACGTATAAAATTCCA | 59.647 | 40.000 | 0.00 | 0.00 | 0.00 | 3.53 |
2602 | 2639 | 6.422776 | AGAACTGCACGTATAAAATTCCAG | 57.577 | 37.500 | 0.00 | 0.00 | 0.00 | 3.86 |
2603 | 2640 | 5.938125 | AGAACTGCACGTATAAAATTCCAGT | 59.062 | 36.000 | 0.00 | 0.00 | 34.10 | 4.00 |
2604 | 2641 | 5.545658 | ACTGCACGTATAAAATTCCAGTG | 57.454 | 39.130 | 0.00 | 0.00 | 31.74 | 3.66 |
2605 | 2642 | 4.394920 | ACTGCACGTATAAAATTCCAGTGG | 59.605 | 41.667 | 1.40 | 1.40 | 31.74 | 4.00 |
2606 | 2643 | 4.328536 | TGCACGTATAAAATTCCAGTGGT | 58.671 | 39.130 | 9.54 | 0.00 | 0.00 | 4.16 |
2607 | 2644 | 4.393680 | TGCACGTATAAAATTCCAGTGGTC | 59.606 | 41.667 | 9.54 | 0.00 | 0.00 | 4.02 |
2608 | 2645 | 4.634443 | GCACGTATAAAATTCCAGTGGTCT | 59.366 | 41.667 | 9.54 | 0.00 | 0.00 | 3.85 |
2609 | 2646 | 5.813672 | GCACGTATAAAATTCCAGTGGTCTA | 59.186 | 40.000 | 9.54 | 0.00 | 0.00 | 2.59 |
2610 | 2647 | 6.482308 | GCACGTATAAAATTCCAGTGGTCTAT | 59.518 | 38.462 | 9.54 | 0.00 | 0.00 | 1.98 |
2611 | 2648 | 7.307219 | GCACGTATAAAATTCCAGTGGTCTATC | 60.307 | 40.741 | 9.54 | 0.00 | 0.00 | 2.08 |
2612 | 2649 | 7.170998 | CACGTATAAAATTCCAGTGGTCTATCC | 59.829 | 40.741 | 9.54 | 0.00 | 0.00 | 2.59 |
2613 | 2650 | 6.365247 | CGTATAAAATTCCAGTGGTCTATCCG | 59.635 | 42.308 | 9.54 | 0.22 | 39.52 | 4.18 |
2614 | 2651 | 3.560636 | AAATTCCAGTGGTCTATCCGG | 57.439 | 47.619 | 9.54 | 0.00 | 39.52 | 5.14 |
2615 | 2652 | 1.424638 | ATTCCAGTGGTCTATCCGGG | 58.575 | 55.000 | 9.54 | 0.00 | 39.52 | 5.73 |
2616 | 2653 | 1.335132 | TTCCAGTGGTCTATCCGGGC | 61.335 | 60.000 | 9.54 | 0.00 | 39.52 | 6.13 |
2617 | 2654 | 1.762460 | CCAGTGGTCTATCCGGGCT | 60.762 | 63.158 | 0.00 | 0.00 | 39.52 | 5.19 |
2618 | 2655 | 1.742768 | CAGTGGTCTATCCGGGCTC | 59.257 | 63.158 | 0.00 | 0.00 | 39.52 | 4.70 |
2619 | 2656 | 0.757188 | CAGTGGTCTATCCGGGCTCT | 60.757 | 60.000 | 0.00 | 0.00 | 39.52 | 4.09 |
2620 | 2657 | 0.757188 | AGTGGTCTATCCGGGCTCTG | 60.757 | 60.000 | 0.00 | 0.00 | 39.52 | 3.35 |
2621 | 2658 | 2.134287 | TGGTCTATCCGGGCTCTGC | 61.134 | 63.158 | 0.00 | 0.00 | 39.52 | 4.26 |
2622 | 2659 | 2.134287 | GGTCTATCCGGGCTCTGCA | 61.134 | 63.158 | 0.00 | 0.00 | 0.00 | 4.41 |
2634 | 2671 | 1.677217 | GGCTCTGCACAGGGTTCTTAG | 60.677 | 57.143 | 0.00 | 0.00 | 0.00 | 2.18 |
2636 | 2673 | 2.093235 | GCTCTGCACAGGGTTCTTAGAT | 60.093 | 50.000 | 0.00 | 0.00 | 0.00 | 1.98 |
2646 | 2683 | 7.386299 | GCACAGGGTTCTTAGATATATGTGAAG | 59.614 | 40.741 | 16.72 | 0.00 | 38.16 | 3.02 |
2670 | 2707 | 9.725019 | AAGTTAATGATGATACTTTCACTCACA | 57.275 | 29.630 | 0.00 | 0.00 | 37.11 | 3.58 |
2675 | 2712 | 7.984422 | TGATGATACTTTCACTCACATTTGT | 57.016 | 32.000 | 0.00 | 0.00 | 37.11 | 2.83 |
2676 | 2713 | 8.394971 | TGATGATACTTTCACTCACATTTGTT | 57.605 | 30.769 | 0.00 | 0.00 | 37.11 | 2.83 |
2731 | 2768 | 9.790389 | AACTAGCATATGTAAGAGCGATAATAC | 57.210 | 33.333 | 4.29 | 0.00 | 0.00 | 1.89 |
2732 | 2769 | 8.407064 | ACTAGCATATGTAAGAGCGATAATACC | 58.593 | 37.037 | 4.29 | 0.00 | 0.00 | 2.73 |
2737 | 2774 | 3.633525 | TGTAAGAGCGATAATACCGTGGT | 59.366 | 43.478 | 0.00 | 0.00 | 0.00 | 4.16 |
2743 | 2780 | 3.192844 | AGCGATAATACCGTGGTATCCTG | 59.807 | 47.826 | 11.80 | 4.57 | 40.08 | 3.86 |
2745 | 2782 | 3.192844 | CGATAATACCGTGGTATCCTGCT | 59.807 | 47.826 | 11.80 | 0.00 | 40.08 | 4.24 |
2750 | 2787 | 1.596934 | CGTGGTATCCTGCTGTGGT | 59.403 | 57.895 | 0.00 | 0.00 | 0.00 | 4.16 |
2760 | 2797 | 6.437793 | GGTATCCTGCTGTGGTTCTATACTAT | 59.562 | 42.308 | 0.00 | 0.00 | 0.00 | 2.12 |
2764 | 2801 | 7.067421 | TCCTGCTGTGGTTCTATACTATTAGT | 58.933 | 38.462 | 1.30 | 1.30 | 0.00 | 2.24 |
2782 | 2819 | 9.647797 | ACTATTAGTGTGACAAATCGTATTTCA | 57.352 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
2796 | 2834 | 9.787532 | AAATCGTATTTCATATTGTTTGACAGG | 57.212 | 29.630 | 0.00 | 0.00 | 0.00 | 4.00 |
2802 | 2840 | 7.681939 | TTTCATATTGTTTGACAGGTACCTC | 57.318 | 36.000 | 12.84 | 2.30 | 0.00 | 3.85 |
2835 | 2873 | 6.182627 | TGATGATATATGGACAATGGAAGCC | 58.817 | 40.000 | 0.00 | 0.00 | 0.00 | 4.35 |
2933 | 2974 | 2.157738 | AGCTCAGGCATGTTCTTGTTC | 58.842 | 47.619 | 0.00 | 0.00 | 41.70 | 3.18 |
2934 | 2975 | 1.881973 | GCTCAGGCATGTTCTTGTTCA | 59.118 | 47.619 | 0.00 | 0.00 | 38.54 | 3.18 |
2995 | 3036 | 7.278135 | TCTTGACTCAAGGAGATTATTCCATG | 58.722 | 38.462 | 17.12 | 0.00 | 41.33 | 3.66 |
3038 | 3079 | 6.059787 | AGATGCTTGTCCTGAGAAACTAAT | 57.940 | 37.500 | 0.00 | 0.00 | 0.00 | 1.73 |
3095 | 3136 | 2.158943 | GGGTTCCACTAGCCATACTGAC | 60.159 | 54.545 | 0.00 | 0.00 | 35.73 | 3.51 |
3141 | 3182 | 9.942526 | AATCATAAGGAGGTAAATTCAAAGGAT | 57.057 | 29.630 | 0.00 | 0.00 | 0.00 | 3.24 |
3152 | 3193 | 8.321353 | GGTAAATTCAAAGGATTTCTGGGAAAT | 58.679 | 33.333 | 5.35 | 5.35 | 35.03 | 2.17 |
3162 | 3203 | 7.840931 | AGGATTTCTGGGAAATGATACAAAAC | 58.159 | 34.615 | 9.78 | 0.00 | 0.00 | 2.43 |
3198 | 3239 | 2.434336 | GTTGGAAGGAAACCCTGCTTTT | 59.566 | 45.455 | 0.00 | 0.00 | 35.52 | 2.27 |
3328 | 3369 | 5.699143 | AGGATGATTTGGTTAAGAGATGGG | 58.301 | 41.667 | 0.00 | 0.00 | 0.00 | 4.00 |
3360 | 3419 | 3.634397 | TTTGTTGGCCTAGAGGAGATG | 57.366 | 47.619 | 3.32 | 0.00 | 37.39 | 2.90 |
3413 | 3472 | 9.037737 | CAATAAAAACATGATCCAAATAGCCAG | 57.962 | 33.333 | 0.00 | 0.00 | 0.00 | 4.85 |
3538 | 5751 | 6.301169 | AGGAATCCCCTATTATTCGTGATC | 57.699 | 41.667 | 0.00 | 0.00 | 45.48 | 2.92 |
3539 | 5752 | 5.189934 | AGGAATCCCCTATTATTCGTGATCC | 59.810 | 44.000 | 0.00 | 0.00 | 45.48 | 3.36 |
3540 | 5753 | 5.045869 | GGAATCCCCTATTATTCGTGATCCA | 60.046 | 44.000 | 0.00 | 0.00 | 33.72 | 3.41 |
3541 | 5754 | 4.884668 | TCCCCTATTATTCGTGATCCAC | 57.115 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
3542 | 5755 | 4.228010 | TCCCCTATTATTCGTGATCCACA | 58.772 | 43.478 | 0.00 | 0.00 | 33.40 | 4.17 |
3543 | 5756 | 4.844085 | TCCCCTATTATTCGTGATCCACAT | 59.156 | 41.667 | 0.00 | 0.00 | 33.40 | 3.21 |
3548 | 5761 | 6.813649 | CCTATTATTCGTGATCCACATACCAG | 59.186 | 42.308 | 0.00 | 0.00 | 33.40 | 4.00 |
3553 | 5766 | 3.454447 | TCGTGATCCACATACCAGGAAAT | 59.546 | 43.478 | 0.00 | 0.00 | 37.48 | 2.17 |
3628 | 5844 | 0.698238 | TGTGGTAGGGAGCATTGCTT | 59.302 | 50.000 | 13.35 | 0.00 | 39.88 | 3.91 |
3630 | 5846 | 2.307392 | TGTGGTAGGGAGCATTGCTTTA | 59.693 | 45.455 | 13.35 | 3.73 | 39.88 | 1.85 |
3854 | 6082 | 8.665643 | TTGCAAAAATTGAAACATCTGAAGAT | 57.334 | 26.923 | 0.00 | 0.00 | 34.56 | 2.40 |
3880 | 6108 | 2.860735 | GAGATCGTCGGTGGAGAAAATG | 59.139 | 50.000 | 0.00 | 0.00 | 0.00 | 2.32 |
3884 | 6112 | 0.521735 | GTCGGTGGAGAAAATGGTGC | 59.478 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
3886 | 6114 | 1.176527 | CGGTGGAGAAAATGGTGCAT | 58.823 | 50.000 | 0.00 | 0.00 | 0.00 | 3.96 |
3887 | 6115 | 1.135315 | CGGTGGAGAAAATGGTGCATG | 60.135 | 52.381 | 0.00 | 0.00 | 0.00 | 4.06 |
3930 | 6158 | 3.066342 | CCTCAATGTTGTGGCATCTCATC | 59.934 | 47.826 | 0.00 | 0.00 | 35.36 | 2.92 |
3931 | 6159 | 3.688235 | TCAATGTTGTGGCATCTCATCA | 58.312 | 40.909 | 0.00 | 0.00 | 0.00 | 3.07 |
3937 | 6165 | 3.657398 | TGTGGCATCTCATCATTCCTT | 57.343 | 42.857 | 0.00 | 0.00 | 0.00 | 3.36 |
3938 | 6166 | 3.548770 | TGTGGCATCTCATCATTCCTTC | 58.451 | 45.455 | 0.00 | 0.00 | 0.00 | 3.46 |
3939 | 6167 | 3.054213 | TGTGGCATCTCATCATTCCTTCA | 60.054 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
3940 | 6168 | 3.564644 | GTGGCATCTCATCATTCCTTCAG | 59.435 | 47.826 | 0.00 | 0.00 | 0.00 | 3.02 |
3941 | 6169 | 3.457012 | TGGCATCTCATCATTCCTTCAGA | 59.543 | 43.478 | 0.00 | 0.00 | 0.00 | 3.27 |
3942 | 6170 | 4.104261 | TGGCATCTCATCATTCCTTCAGAT | 59.896 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
3943 | 6171 | 4.696402 | GGCATCTCATCATTCCTTCAGATC | 59.304 | 45.833 | 0.00 | 0.00 | 0.00 | 2.75 |
3944 | 6172 | 5.513441 | GGCATCTCATCATTCCTTCAGATCT | 60.513 | 44.000 | 0.00 | 0.00 | 0.00 | 2.75 |
3945 | 6173 | 5.410132 | GCATCTCATCATTCCTTCAGATCTG | 59.590 | 44.000 | 17.07 | 17.07 | 0.00 | 2.90 |
3946 | 6174 | 6.526526 | CATCTCATCATTCCTTCAGATCTGT | 58.473 | 40.000 | 21.92 | 0.00 | 0.00 | 3.41 |
3947 | 6175 | 6.159299 | TCTCATCATTCCTTCAGATCTGTC | 57.841 | 41.667 | 21.92 | 0.00 | 0.00 | 3.51 |
3948 | 6176 | 5.898397 | TCTCATCATTCCTTCAGATCTGTCT | 59.102 | 40.000 | 21.92 | 0.00 | 34.14 | 3.41 |
3949 | 6177 | 6.383436 | TCTCATCATTCCTTCAGATCTGTCTT | 59.617 | 38.462 | 21.92 | 0.74 | 30.42 | 3.01 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
99 | 100 | 1.293062 | ACCACTACTAGACGAGGGGA | 58.707 | 55.000 | 16.13 | 0.00 | 38.69 | 4.81 |
212 | 213 | 8.244113 | ACAATGTCTCGAGAAAGTTTTTCTTTT | 58.756 | 29.630 | 18.55 | 0.00 | 45.15 | 2.27 |
254 | 255 | 6.428465 | TCTTGATACGGTGCTGTGAATAAAAA | 59.572 | 34.615 | 0.00 | 0.00 | 0.00 | 1.94 |
271 | 272 | 5.419542 | TCTGTAGTTGCACCATCTTGATAC | 58.580 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
282 | 283 | 3.386768 | TGACCTCTTCTGTAGTTGCAC | 57.613 | 47.619 | 0.00 | 0.00 | 0.00 | 4.57 |
356 | 357 | 5.187576 | GGGAATGAAGAAACCCATCAATCAA | 59.812 | 40.000 | 0.00 | 0.00 | 41.72 | 2.57 |
462 | 463 | 5.366477 | ACTCCTGGAACCAAAATCAACATTT | 59.634 | 36.000 | 0.00 | 0.00 | 33.27 | 2.32 |
478 | 479 | 2.435805 | GCATAATGGTCTCACTCCTGGA | 59.564 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
599 | 600 | 1.766496 | TCTTCCAACCGACTCCACTTT | 59.234 | 47.619 | 0.00 | 0.00 | 0.00 | 2.66 |
813 | 814 | 1.305201 | GTCAACCATGTGAACGGTGT | 58.695 | 50.000 | 0.00 | 0.00 | 35.08 | 4.16 |
896 | 897 | 1.843851 | GGGATGTCAAGTGGTATGGGA | 59.156 | 52.381 | 0.00 | 0.00 | 0.00 | 4.37 |
949 | 950 | 7.750229 | TCAAGCAATCTAAATAGCCTTATGG | 57.250 | 36.000 | 0.00 | 0.00 | 0.00 | 2.74 |
963 | 964 | 4.410099 | TCTTTCCCACAATCAAGCAATCT | 58.590 | 39.130 | 0.00 | 0.00 | 0.00 | 2.40 |
989 | 990 | 1.259840 | CCCCTCCATTTGTTGCAGGG | 61.260 | 60.000 | 0.00 | 0.00 | 43.31 | 4.45 |
1085 | 1086 | 0.449388 | CTTCGCATCTTTGGACAGCC | 59.551 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
1289 | 1290 | 2.990740 | TAGTTCACCCAAAAGCCCAT | 57.009 | 45.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1344 | 1345 | 4.077822 | CCTGAGCCTTGAGTTCTTCAATT | 58.922 | 43.478 | 0.00 | 0.00 | 44.48 | 2.32 |
1347 | 1348 | 2.037772 | GACCTGAGCCTTGAGTTCTTCA | 59.962 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1356 | 1357 | 1.818642 | CTTCCAAGACCTGAGCCTTG | 58.181 | 55.000 | 6.03 | 6.03 | 39.43 | 3.61 |
1491 | 1492 | 3.494398 | GCTTGTCCTTTGGGCGATCTATA | 60.494 | 47.826 | 0.00 | 0.00 | 0.00 | 1.31 |
1517 | 1518 | 0.179089 | CTCCATCCTCAGCAACTCGG | 60.179 | 60.000 | 0.00 | 0.00 | 0.00 | 4.63 |
1681 | 1682 | 9.821240 | AGAGAGTATATCTGACAATACCTTGAT | 57.179 | 33.333 | 7.87 | 0.00 | 38.84 | 2.57 |
1941 | 1942 | 3.186001 | GCATGTCTGAAGTGTCAACAGAG | 59.814 | 47.826 | 0.00 | 0.00 | 40.55 | 3.35 |
2000 | 2023 | 7.532682 | TGTTTTACAGAAAGGCAAAAATGAC | 57.467 | 32.000 | 0.00 | 0.00 | 0.00 | 3.06 |
2014 | 2037 | 8.626526 | GGATTTAAGTGGACTTTGTTTTACAGA | 58.373 | 33.333 | 0.00 | 0.00 | 37.40 | 3.41 |
2102 | 2126 | 5.477291 | AGTCTAGTTGGATACGTCATATGGG | 59.523 | 44.000 | 2.13 | 0.00 | 42.51 | 4.00 |
2109 | 2133 | 6.696148 | CCACATTTAGTCTAGTTGGATACGTC | 59.304 | 42.308 | 0.00 | 0.00 | 42.51 | 4.34 |
2201 | 2235 | 2.170397 | TGTGCTCAAAGTCTCAGACCAA | 59.830 | 45.455 | 0.00 | 0.00 | 32.18 | 3.67 |
2230 | 2264 | 5.422650 | AGTTTAGGCCTCCACTTCTAAGTAG | 59.577 | 44.000 | 9.68 | 0.00 | 37.08 | 2.57 |
2238 | 2273 | 2.711547 | AGTGAAGTTTAGGCCTCCACTT | 59.288 | 45.455 | 23.51 | 23.51 | 30.19 | 3.16 |
2247 | 2282 | 9.612620 | GAAACATAAATGACAGTGAAGTTTAGG | 57.387 | 33.333 | 0.00 | 3.47 | 0.00 | 2.69 |
2257 | 2292 | 7.961351 | TCCAATTTGGAAACATAAATGACAGT | 58.039 | 30.769 | 15.83 | 0.00 | 45.00 | 3.55 |
2324 | 2360 | 6.857437 | TCCACTTGAGTAATTCTGATCAGA | 57.143 | 37.500 | 21.67 | 21.67 | 35.27 | 3.27 |
2326 | 2362 | 8.868522 | AAATTCCACTTGAGTAATTCTGATCA | 57.131 | 30.769 | 0.00 | 0.00 | 0.00 | 2.92 |
2354 | 2390 | 8.239998 | GCAGCTTAGTTTGAATCTTGATTACTT | 58.760 | 33.333 | 3.54 | 0.00 | 0.00 | 2.24 |
2364 | 2401 | 8.970691 | TTTCTAATTGCAGCTTAGTTTGAATC | 57.029 | 30.769 | 14.34 | 0.00 | 0.00 | 2.52 |
2405 | 2442 | 9.817809 | AGAAATATACAGATAAAAGACTCGCAA | 57.182 | 29.630 | 0.00 | 0.00 | 0.00 | 4.85 |
2440 | 2477 | 0.697854 | AGGGTCTGACCACTTTGGGT | 60.698 | 55.000 | 26.94 | 0.00 | 43.37 | 4.51 |
2442 | 2479 | 1.545651 | GGAAGGGTCTGACCACTTTGG | 60.546 | 57.143 | 26.94 | 0.00 | 41.02 | 3.28 |
2443 | 2480 | 1.545651 | GGGAAGGGTCTGACCACTTTG | 60.546 | 57.143 | 26.94 | 0.00 | 41.02 | 2.77 |
2446 | 2483 | 0.838122 | CAGGGAAGGGTCTGACCACT | 60.838 | 60.000 | 26.94 | 18.28 | 41.02 | 4.00 |
2447 | 2484 | 1.679898 | CAGGGAAGGGTCTGACCAC | 59.320 | 63.158 | 26.94 | 16.44 | 41.02 | 4.16 |
2448 | 2485 | 1.538876 | CCAGGGAAGGGTCTGACCA | 60.539 | 63.158 | 26.94 | 0.00 | 41.02 | 4.02 |
2449 | 2486 | 1.229529 | TCCAGGGAAGGGTCTGACC | 60.230 | 63.158 | 18.65 | 18.65 | 37.60 | 4.02 |
2450 | 2487 | 1.554583 | GGTCCAGGGAAGGGTCTGAC | 61.555 | 65.000 | 0.00 | 0.00 | 33.11 | 3.51 |
2451 | 2488 | 1.229529 | GGTCCAGGGAAGGGTCTGA | 60.230 | 63.158 | 0.00 | 0.00 | 33.11 | 3.27 |
2452 | 2489 | 1.229658 | AGGTCCAGGGAAGGGTCTG | 60.230 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
2453 | 2490 | 1.229658 | CAGGTCCAGGGAAGGGTCT | 60.230 | 63.158 | 0.00 | 0.00 | 0.00 | 3.85 |
2454 | 2491 | 2.972819 | GCAGGTCCAGGGAAGGGTC | 61.973 | 68.421 | 0.00 | 0.00 | 0.00 | 4.46 |
2455 | 2492 | 2.936032 | GCAGGTCCAGGGAAGGGT | 60.936 | 66.667 | 0.00 | 0.00 | 0.00 | 4.34 |
2456 | 2493 | 4.101448 | CGCAGGTCCAGGGAAGGG | 62.101 | 72.222 | 0.00 | 0.00 | 0.00 | 3.95 |
2457 | 2494 | 4.785453 | GCGCAGGTCCAGGGAAGG | 62.785 | 72.222 | 0.30 | 0.00 | 0.00 | 3.46 |
2458 | 2495 | 2.303549 | CTAGCGCAGGTCCAGGGAAG | 62.304 | 65.000 | 11.47 | 0.00 | 40.68 | 3.46 |
2459 | 2496 | 2.284331 | TAGCGCAGGTCCAGGGAA | 60.284 | 61.111 | 11.47 | 0.00 | 40.68 | 3.97 |
2460 | 2497 | 2.759973 | CTAGCGCAGGTCCAGGGA | 60.760 | 66.667 | 11.47 | 0.00 | 40.68 | 4.20 |
2461 | 2498 | 2.759973 | TCTAGCGCAGGTCCAGGG | 60.760 | 66.667 | 11.47 | 0.00 | 40.68 | 4.45 |
2462 | 2499 | 2.790791 | CCTCTAGCGCAGGTCCAGG | 61.791 | 68.421 | 11.47 | 4.20 | 40.68 | 4.45 |
2463 | 2500 | 2.790791 | CCCTCTAGCGCAGGTCCAG | 61.791 | 68.421 | 11.47 | 0.00 | 40.68 | 3.86 |
2464 | 2501 | 2.759973 | CCCTCTAGCGCAGGTCCA | 60.760 | 66.667 | 11.47 | 0.00 | 40.68 | 4.02 |
2465 | 2502 | 2.058595 | TTCCCTCTAGCGCAGGTCC | 61.059 | 63.158 | 11.47 | 0.00 | 40.68 | 4.46 |
2466 | 2503 | 1.142097 | GTTCCCTCTAGCGCAGGTC | 59.858 | 63.158 | 11.47 | 0.00 | 40.68 | 3.85 |
2467 | 2504 | 0.033405 | TAGTTCCCTCTAGCGCAGGT | 60.033 | 55.000 | 11.47 | 0.00 | 44.89 | 4.00 |
2468 | 2505 | 0.386113 | GTAGTTCCCTCTAGCGCAGG | 59.614 | 60.000 | 11.47 | 7.90 | 0.00 | 4.85 |
2469 | 2506 | 0.386113 | GGTAGTTCCCTCTAGCGCAG | 59.614 | 60.000 | 11.47 | 5.22 | 0.00 | 5.18 |
2470 | 2507 | 0.033405 | AGGTAGTTCCCTCTAGCGCA | 60.033 | 55.000 | 11.47 | 0.00 | 41.48 | 6.09 |
2471 | 2508 | 0.386113 | CAGGTAGTTCCCTCTAGCGC | 59.614 | 60.000 | 0.00 | 0.00 | 41.48 | 5.92 |
2472 | 2509 | 0.386113 | GCAGGTAGTTCCCTCTAGCG | 59.614 | 60.000 | 0.00 | 0.00 | 41.48 | 4.26 |
2473 | 2510 | 1.486211 | TGCAGGTAGTTCCCTCTAGC | 58.514 | 55.000 | 0.00 | 0.00 | 38.30 | 3.42 |
2474 | 2511 | 2.294791 | CGATGCAGGTAGTTCCCTCTAG | 59.705 | 54.545 | 0.00 | 0.00 | 36.75 | 2.43 |
2475 | 2512 | 2.307768 | CGATGCAGGTAGTTCCCTCTA | 58.692 | 52.381 | 0.00 | 0.00 | 36.75 | 2.43 |
2476 | 2513 | 1.115467 | CGATGCAGGTAGTTCCCTCT | 58.885 | 55.000 | 0.00 | 0.00 | 36.75 | 3.69 |
2477 | 2514 | 0.105039 | CCGATGCAGGTAGTTCCCTC | 59.895 | 60.000 | 0.00 | 0.00 | 36.75 | 4.30 |
2478 | 2515 | 1.338136 | CCCGATGCAGGTAGTTCCCT | 61.338 | 60.000 | 0.00 | 0.00 | 36.75 | 4.20 |
2479 | 2516 | 1.146263 | CCCGATGCAGGTAGTTCCC | 59.854 | 63.158 | 0.00 | 0.00 | 36.75 | 3.97 |
2480 | 2517 | 1.523938 | GCCCGATGCAGGTAGTTCC | 60.524 | 63.158 | 0.00 | 0.00 | 40.77 | 3.62 |
2481 | 2518 | 1.523938 | GGCCCGATGCAGGTAGTTC | 60.524 | 63.158 | 0.00 | 0.00 | 43.89 | 3.01 |
2482 | 2519 | 2.590092 | GGCCCGATGCAGGTAGTT | 59.410 | 61.111 | 0.00 | 0.00 | 43.89 | 2.24 |
2483 | 2520 | 3.849951 | CGGCCCGATGCAGGTAGT | 61.850 | 66.667 | 0.00 | 0.00 | 43.89 | 2.73 |
2488 | 2525 | 2.561549 | AAAAATGCGGCCCGATGCAG | 62.562 | 55.000 | 7.68 | 0.00 | 45.52 | 4.41 |
2489 | 2526 | 2.644212 | AAAAATGCGGCCCGATGCA | 61.644 | 52.632 | 7.68 | 5.46 | 46.51 | 3.96 |
2490 | 2527 | 2.184066 | AAAAATGCGGCCCGATGC | 59.816 | 55.556 | 7.68 | 0.00 | 40.16 | 3.91 |
2510 | 2547 | 9.419297 | GCATGCATGATTGAGAAATATACAAAT | 57.581 | 29.630 | 30.64 | 0.00 | 0.00 | 2.32 |
2511 | 2548 | 8.635328 | AGCATGCATGATTGAGAAATATACAAA | 58.365 | 29.630 | 30.64 | 0.00 | 0.00 | 2.83 |
2512 | 2549 | 8.079809 | CAGCATGCATGATTGAGAAATATACAA | 58.920 | 33.333 | 30.64 | 0.00 | 0.00 | 2.41 |
2513 | 2550 | 7.308951 | CCAGCATGCATGATTGAGAAATATACA | 60.309 | 37.037 | 30.64 | 0.00 | 31.97 | 2.29 |
2514 | 2551 | 7.027760 | CCAGCATGCATGATTGAGAAATATAC | 58.972 | 38.462 | 30.64 | 6.96 | 31.97 | 1.47 |
2515 | 2552 | 6.943718 | TCCAGCATGCATGATTGAGAAATATA | 59.056 | 34.615 | 30.64 | 0.00 | 31.97 | 0.86 |
2516 | 2553 | 5.773176 | TCCAGCATGCATGATTGAGAAATAT | 59.227 | 36.000 | 30.64 | 0.00 | 31.97 | 1.28 |
2517 | 2554 | 5.134661 | TCCAGCATGCATGATTGAGAAATA | 58.865 | 37.500 | 30.64 | 0.00 | 31.97 | 1.40 |
2518 | 2555 | 3.958147 | TCCAGCATGCATGATTGAGAAAT | 59.042 | 39.130 | 30.64 | 0.88 | 31.97 | 2.17 |
2519 | 2556 | 3.358118 | TCCAGCATGCATGATTGAGAAA | 58.642 | 40.909 | 30.64 | 10.29 | 31.97 | 2.52 |
2520 | 2557 | 3.007473 | TCCAGCATGCATGATTGAGAA | 57.993 | 42.857 | 30.64 | 12.39 | 31.97 | 2.87 |
2521 | 2558 | 2.721425 | TCCAGCATGCATGATTGAGA | 57.279 | 45.000 | 30.64 | 16.82 | 31.97 | 3.27 |
2522 | 2559 | 3.793797 | TTTCCAGCATGCATGATTGAG | 57.206 | 42.857 | 30.64 | 14.75 | 31.97 | 3.02 |
2523 | 2560 | 4.538746 | TTTTTCCAGCATGCATGATTGA | 57.461 | 36.364 | 30.64 | 22.17 | 31.97 | 2.57 |
2524 | 2561 | 5.584649 | AGAATTTTTCCAGCATGCATGATTG | 59.415 | 36.000 | 30.64 | 23.94 | 31.97 | 2.67 |
2525 | 2562 | 5.741011 | AGAATTTTTCCAGCATGCATGATT | 58.259 | 33.333 | 30.64 | 16.99 | 31.97 | 2.57 |
2560 | 2597 | 5.833131 | AGTTCTCCTGCATGGTTAAGAAAAA | 59.167 | 36.000 | 0.00 | 0.00 | 37.07 | 1.94 |
2562 | 2599 | 4.761739 | CAGTTCTCCTGCATGGTTAAGAAA | 59.238 | 41.667 | 0.00 | 0.00 | 33.59 | 2.52 |
2575 | 2612 | 6.422776 | AATTTTATACGTGCAGTTCTCCTG | 57.577 | 37.500 | 0.00 | 0.00 | 44.53 | 3.86 |
2576 | 2613 | 5.585047 | GGAATTTTATACGTGCAGTTCTCCT | 59.415 | 40.000 | 0.00 | 0.00 | 0.00 | 3.69 |
2577 | 2614 | 5.353123 | TGGAATTTTATACGTGCAGTTCTCC | 59.647 | 40.000 | 0.00 | 0.00 | 0.00 | 3.71 |
2578 | 2615 | 6.092259 | ACTGGAATTTTATACGTGCAGTTCTC | 59.908 | 38.462 | 0.00 | 0.00 | 39.30 | 2.87 |
2579 | 2616 | 5.938125 | ACTGGAATTTTATACGTGCAGTTCT | 59.062 | 36.000 | 0.00 | 0.00 | 39.30 | 3.01 |
2580 | 2617 | 6.021596 | CACTGGAATTTTATACGTGCAGTTC | 58.978 | 40.000 | 0.00 | 0.00 | 40.21 | 3.01 |
2581 | 2618 | 5.106317 | CCACTGGAATTTTATACGTGCAGTT | 60.106 | 40.000 | 0.00 | 0.00 | 40.21 | 3.16 |
2582 | 2619 | 4.394920 | CCACTGGAATTTTATACGTGCAGT | 59.605 | 41.667 | 0.00 | 0.00 | 42.54 | 4.40 |
2583 | 2620 | 4.394920 | ACCACTGGAATTTTATACGTGCAG | 59.605 | 41.667 | 0.71 | 0.00 | 35.74 | 4.41 |
2584 | 2621 | 4.328536 | ACCACTGGAATTTTATACGTGCA | 58.671 | 39.130 | 0.71 | 0.00 | 0.00 | 4.57 |
2585 | 2622 | 4.634443 | AGACCACTGGAATTTTATACGTGC | 59.366 | 41.667 | 0.71 | 0.00 | 0.00 | 5.34 |
2586 | 2623 | 7.170998 | GGATAGACCACTGGAATTTTATACGTG | 59.829 | 40.741 | 0.71 | 0.00 | 38.79 | 4.49 |
2587 | 2624 | 7.215085 | GGATAGACCACTGGAATTTTATACGT | 58.785 | 38.462 | 0.71 | 0.00 | 38.79 | 3.57 |
2588 | 2625 | 6.365247 | CGGATAGACCACTGGAATTTTATACG | 59.635 | 42.308 | 0.71 | 1.57 | 38.90 | 3.06 |
2589 | 2626 | 6.649557 | CCGGATAGACCACTGGAATTTTATAC | 59.350 | 42.308 | 0.71 | 0.00 | 38.90 | 1.47 |
2590 | 2627 | 6.239772 | CCCGGATAGACCACTGGAATTTTATA | 60.240 | 42.308 | 0.73 | 0.00 | 38.90 | 0.98 |
2591 | 2628 | 5.456186 | CCCGGATAGACCACTGGAATTTTAT | 60.456 | 44.000 | 0.73 | 0.00 | 38.90 | 1.40 |
2592 | 2629 | 4.141574 | CCCGGATAGACCACTGGAATTTTA | 60.142 | 45.833 | 0.73 | 0.00 | 38.90 | 1.52 |
2593 | 2630 | 3.371595 | CCCGGATAGACCACTGGAATTTT | 60.372 | 47.826 | 0.73 | 0.00 | 38.90 | 1.82 |
2594 | 2631 | 2.172717 | CCCGGATAGACCACTGGAATTT | 59.827 | 50.000 | 0.73 | 0.00 | 38.90 | 1.82 |
2595 | 2632 | 1.768870 | CCCGGATAGACCACTGGAATT | 59.231 | 52.381 | 0.73 | 0.00 | 38.90 | 2.17 |
2596 | 2633 | 1.424638 | CCCGGATAGACCACTGGAAT | 58.575 | 55.000 | 0.73 | 0.00 | 38.90 | 3.01 |
2597 | 2634 | 1.335132 | GCCCGGATAGACCACTGGAA | 61.335 | 60.000 | 0.73 | 0.00 | 38.90 | 3.53 |
2598 | 2635 | 1.760875 | GCCCGGATAGACCACTGGA | 60.761 | 63.158 | 0.73 | 0.00 | 38.90 | 3.86 |
2599 | 2636 | 1.749334 | GAGCCCGGATAGACCACTGG | 61.749 | 65.000 | 0.73 | 0.00 | 38.90 | 4.00 |
2600 | 2637 | 0.757188 | AGAGCCCGGATAGACCACTG | 60.757 | 60.000 | 0.73 | 0.00 | 38.90 | 3.66 |
2601 | 2638 | 0.757188 | CAGAGCCCGGATAGACCACT | 60.757 | 60.000 | 0.73 | 0.00 | 38.90 | 4.00 |
2602 | 2639 | 1.742768 | CAGAGCCCGGATAGACCAC | 59.257 | 63.158 | 0.73 | 0.00 | 38.90 | 4.16 |
2603 | 2640 | 2.134287 | GCAGAGCCCGGATAGACCA | 61.134 | 63.158 | 0.73 | 0.00 | 38.90 | 4.02 |
2604 | 2641 | 2.134287 | TGCAGAGCCCGGATAGACC | 61.134 | 63.158 | 0.73 | 0.00 | 0.00 | 3.85 |
2605 | 2642 | 1.068250 | GTGCAGAGCCCGGATAGAC | 59.932 | 63.158 | 0.73 | 0.00 | 0.00 | 2.59 |
2606 | 2643 | 1.381191 | TGTGCAGAGCCCGGATAGA | 60.381 | 57.895 | 0.73 | 0.00 | 0.00 | 1.98 |
2607 | 2644 | 1.068753 | CTGTGCAGAGCCCGGATAG | 59.931 | 63.158 | 0.73 | 0.00 | 0.00 | 2.08 |
2608 | 2645 | 2.434843 | CCTGTGCAGAGCCCGGATA | 61.435 | 63.158 | 0.73 | 0.00 | 0.00 | 2.59 |
2609 | 2646 | 3.790437 | CCTGTGCAGAGCCCGGAT | 61.790 | 66.667 | 0.73 | 0.00 | 0.00 | 4.18 |
2612 | 2649 | 4.335647 | AACCCTGTGCAGAGCCCG | 62.336 | 66.667 | 5.08 | 0.00 | 0.00 | 6.13 |
2613 | 2650 | 2.360475 | GAACCCTGTGCAGAGCCC | 60.360 | 66.667 | 5.08 | 0.00 | 0.00 | 5.19 |
2614 | 2651 | 0.324943 | TAAGAACCCTGTGCAGAGCC | 59.675 | 55.000 | 5.08 | 0.00 | 0.00 | 4.70 |
2615 | 2652 | 1.276421 | TCTAAGAACCCTGTGCAGAGC | 59.724 | 52.381 | 5.08 | 0.00 | 0.00 | 4.09 |
2616 | 2653 | 3.902881 | ATCTAAGAACCCTGTGCAGAG | 57.097 | 47.619 | 3.32 | 3.32 | 0.00 | 3.35 |
2617 | 2654 | 6.554982 | ACATATATCTAAGAACCCTGTGCAGA | 59.445 | 38.462 | 0.02 | 0.00 | 0.00 | 4.26 |
2618 | 2655 | 6.648310 | CACATATATCTAAGAACCCTGTGCAG | 59.352 | 42.308 | 0.00 | 0.00 | 0.00 | 4.41 |
2619 | 2656 | 6.326323 | TCACATATATCTAAGAACCCTGTGCA | 59.674 | 38.462 | 0.00 | 0.00 | 33.34 | 4.57 |
2620 | 2657 | 6.759272 | TCACATATATCTAAGAACCCTGTGC | 58.241 | 40.000 | 0.00 | 0.00 | 33.34 | 4.57 |
2621 | 2658 | 8.424918 | ACTTCACATATATCTAAGAACCCTGTG | 58.575 | 37.037 | 0.00 | 0.00 | 34.31 | 3.66 |
2622 | 2659 | 8.554490 | ACTTCACATATATCTAAGAACCCTGT | 57.446 | 34.615 | 5.61 | 0.00 | 0.00 | 4.00 |
2698 | 2735 | 9.586150 | CGCTCTTACATATGCTAGTTAAATTTG | 57.414 | 33.333 | 1.58 | 0.00 | 0.00 | 2.32 |
2699 | 2736 | 9.542462 | TCGCTCTTACATATGCTAGTTAAATTT | 57.458 | 29.630 | 1.58 | 0.00 | 0.00 | 1.82 |
2700 | 2737 | 9.712305 | ATCGCTCTTACATATGCTAGTTAAATT | 57.288 | 29.630 | 1.58 | 0.00 | 0.00 | 1.82 |
2731 | 2768 | 1.153369 | CCACAGCAGGATACCACGG | 60.153 | 63.158 | 0.00 | 0.00 | 37.17 | 4.94 |
2732 | 2769 | 0.036388 | AACCACAGCAGGATACCACG | 60.036 | 55.000 | 0.00 | 0.00 | 37.17 | 4.94 |
2737 | 2774 | 9.244292 | CTAATAGTATAGAACCACAGCAGGATA | 57.756 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
2743 | 2780 | 7.648510 | GTCACACTAATAGTATAGAACCACAGC | 59.351 | 40.741 | 0.00 | 0.00 | 0.00 | 4.40 |
2745 | 2782 | 8.584063 | TGTCACACTAATAGTATAGAACCACA | 57.416 | 34.615 | 0.00 | 0.00 | 0.00 | 4.17 |
2774 | 2811 | 8.120465 | GGTACCTGTCAAACAATATGAAATACG | 58.880 | 37.037 | 4.06 | 0.00 | 0.00 | 3.06 |
2777 | 2814 | 7.888021 | TGAGGTACCTGTCAAACAATATGAAAT | 59.112 | 33.333 | 22.10 | 0.00 | 0.00 | 2.17 |
2778 | 2815 | 7.227873 | TGAGGTACCTGTCAAACAATATGAAA | 58.772 | 34.615 | 22.10 | 0.00 | 0.00 | 2.69 |
2779 | 2816 | 6.774673 | TGAGGTACCTGTCAAACAATATGAA | 58.225 | 36.000 | 22.10 | 0.00 | 0.00 | 2.57 |
2780 | 2817 | 6.367374 | TGAGGTACCTGTCAAACAATATGA | 57.633 | 37.500 | 22.10 | 0.00 | 0.00 | 2.15 |
2781 | 2818 | 6.018751 | CGATGAGGTACCTGTCAAACAATATG | 60.019 | 42.308 | 22.10 | 0.00 | 0.00 | 1.78 |
2782 | 2819 | 6.049149 | CGATGAGGTACCTGTCAAACAATAT | 58.951 | 40.000 | 22.10 | 0.00 | 0.00 | 1.28 |
2802 | 2840 | 8.483307 | TTGTCCATATATCATCAATGACGATG | 57.517 | 34.615 | 1.69 | 0.00 | 43.50 | 3.84 |
2859 | 2897 | 8.317679 | ACTCTACTGCCATTATTATTCTCCATC | 58.682 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
2872 | 2910 | 8.537016 | TGTAGTTGTTATAACTCTACTGCCATT | 58.463 | 33.333 | 29.01 | 11.71 | 37.62 | 3.16 |
2873 | 2911 | 7.980099 | GTGTAGTTGTTATAACTCTACTGCCAT | 59.020 | 37.037 | 29.01 | 12.14 | 37.62 | 4.40 |
2949 | 2990 | 7.335422 | TCAAGATCATTAAGAGGTTTGAGCTTC | 59.665 | 37.037 | 2.80 | 0.00 | 41.42 | 3.86 |
2953 | 2994 | 7.821359 | TGAGTCAAGATCATTAAGAGGTTTGAG | 59.179 | 37.037 | 0.00 | 0.00 | 29.85 | 3.02 |
2995 | 3036 | 3.267031 | TCTTCAGAGGGGAAAATCCTTCC | 59.733 | 47.826 | 0.00 | 0.00 | 36.57 | 3.46 |
3198 | 3239 | 4.849813 | AAGGACATGTCTCATCCATTGA | 57.150 | 40.909 | 24.50 | 0.00 | 34.73 | 2.57 |
3233 | 3274 | 8.646900 | AGGTCTTGAGATCCAGAGATAAATAAC | 58.353 | 37.037 | 0.00 | 0.00 | 30.90 | 1.89 |
3252 | 3293 | 4.454847 | CCAAGATATAGCATGCAGGTCTTG | 59.545 | 45.833 | 28.91 | 28.91 | 40.23 | 3.02 |
3328 | 3369 | 1.281656 | CAACAAAACCCTCGGCGAC | 59.718 | 57.895 | 4.99 | 0.00 | 0.00 | 5.19 |
3360 | 3419 | 6.149474 | TGAGCTCACTAAAATAACTTTCTGCC | 59.851 | 38.462 | 13.74 | 0.00 | 0.00 | 4.85 |
3413 | 3472 | 3.057315 | CACATTCCCACAGTCATCAAACC | 60.057 | 47.826 | 0.00 | 0.00 | 0.00 | 3.27 |
3528 | 5729 | 4.219919 | TCCTGGTATGTGGATCACGAATA | 58.780 | 43.478 | 0.00 | 0.00 | 37.14 | 1.75 |
3532 | 5745 | 2.979814 | TTCCTGGTATGTGGATCACG | 57.020 | 50.000 | 0.00 | 0.00 | 37.14 | 4.35 |
3533 | 5746 | 3.316308 | GCATTTCCTGGTATGTGGATCAC | 59.684 | 47.826 | 11.31 | 0.00 | 34.56 | 3.06 |
3534 | 5747 | 3.202818 | AGCATTTCCTGGTATGTGGATCA | 59.797 | 43.478 | 11.31 | 0.00 | 32.64 | 2.92 |
3535 | 5748 | 3.817647 | GAGCATTTCCTGGTATGTGGATC | 59.182 | 47.826 | 11.31 | 0.00 | 35.19 | 3.36 |
3536 | 5749 | 3.435601 | GGAGCATTTCCTGGTATGTGGAT | 60.436 | 47.826 | 11.31 | 0.00 | 43.16 | 3.41 |
3537 | 5750 | 2.092429 | GGAGCATTTCCTGGTATGTGGA | 60.092 | 50.000 | 11.31 | 0.00 | 43.16 | 4.02 |
3538 | 5751 | 2.301346 | GGAGCATTTCCTGGTATGTGG | 58.699 | 52.381 | 11.31 | 0.00 | 43.16 | 4.17 |
3539 | 5752 | 3.003394 | TGGAGCATTTCCTGGTATGTG | 57.997 | 47.619 | 11.31 | 1.70 | 46.92 | 3.21 |
3540 | 5753 | 3.559069 | CATGGAGCATTTCCTGGTATGT | 58.441 | 45.455 | 11.31 | 2.02 | 46.92 | 2.29 |
3541 | 5754 | 2.889045 | CCATGGAGCATTTCCTGGTATG | 59.111 | 50.000 | 5.56 | 0.49 | 46.92 | 2.39 |
3542 | 5755 | 2.785269 | TCCATGGAGCATTTCCTGGTAT | 59.215 | 45.455 | 11.44 | 0.00 | 46.92 | 2.73 |
3543 | 5756 | 2.204463 | TCCATGGAGCATTTCCTGGTA | 58.796 | 47.619 | 11.44 | 0.00 | 46.92 | 3.25 |
3548 | 5761 | 2.098117 | CGAACTTCCATGGAGCATTTCC | 59.902 | 50.000 | 15.53 | 1.47 | 46.98 | 3.13 |
3553 | 5766 | 1.377202 | GGCGAACTTCCATGGAGCA | 60.377 | 57.895 | 20.79 | 5.68 | 0.00 | 4.26 |
3628 | 5844 | 6.786122 | AGTTAAATGACCTAACTTGGGCTAA | 58.214 | 36.000 | 0.00 | 0.00 | 36.42 | 3.09 |
3630 | 5846 | 5.256806 | AGTTAAATGACCTAACTTGGGCT | 57.743 | 39.130 | 0.00 | 0.00 | 36.42 | 5.19 |
3730 | 5958 | 4.036518 | AGATCATACTGCTCTTCCTTGGT | 58.963 | 43.478 | 0.00 | 0.00 | 0.00 | 3.67 |
3854 | 6082 | 1.954382 | CTCCACCGACGATCTCCAATA | 59.046 | 52.381 | 0.00 | 0.00 | 0.00 | 1.90 |
3880 | 6108 | 1.811860 | GAACATCCAGCCATGCACC | 59.188 | 57.895 | 0.00 | 0.00 | 0.00 | 5.01 |
3884 | 6112 | 0.940126 | GTAGCGAACATCCAGCCATG | 59.060 | 55.000 | 0.00 | 0.00 | 0.00 | 3.66 |
3886 | 6114 | 0.613260 | AAGTAGCGAACATCCAGCCA | 59.387 | 50.000 | 0.00 | 0.00 | 0.00 | 4.75 |
3887 | 6115 | 2.202566 | GTAAGTAGCGAACATCCAGCC | 58.797 | 52.381 | 0.00 | 0.00 | 0.00 | 4.85 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.