Multiple sequence alignment - TraesCS5A01G305400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G305400 chr5A 100.000 5515 0 0 1 5515 514158285 514152771 0.000000e+00 10185.0
1 TraesCS5A01G305400 chr5A 93.187 411 27 1 219 629 514302603 514302194 2.200000e-168 603.0
2 TraesCS5A01G305400 chr5A 96.970 33 1 0 267 299 514302639 514302607 7.720000e-04 56.5
3 TraesCS5A01G305400 chr5B 93.170 4041 176 44 747 4743 489813910 489809926 0.000000e+00 5842.0
4 TraesCS5A01G305400 chr5B 95.134 781 29 4 4739 5515 489809891 489809116 0.000000e+00 1223.0
5 TraesCS5A01G305400 chr5D 92.153 4078 183 46 718 4743 408322540 408318548 0.000000e+00 5631.0
6 TraesCS5A01G305400 chr5D 96.774 775 19 5 4739 5508 408318513 408317740 0.000000e+00 1288.0
7 TraesCS5A01G305400 chr5D 83.929 336 45 7 1 332 408323938 408323608 4.150000e-81 313.0
8 TraesCS5A01G305400 chr1B 84.356 505 50 15 3797 4297 427067260 427066781 8.370000e-128 468.0
9 TraesCS5A01G305400 chr4D 85.294 204 24 6 2850 3050 208902684 208902484 7.240000e-49 206.0
10 TraesCS5A01G305400 chr7A 85.787 197 22 6 2856 3050 30412071 30412263 2.600000e-48 204.0
11 TraesCS5A01G305400 chr2B 85.787 197 22 6 2856 3050 36503322 36503130 2.600000e-48 204.0
12 TraesCS5A01G305400 chr6B 85.279 197 23 6 2856 3050 29739307 29739499 1.210000e-46 198.0
13 TraesCS5A01G305400 chr3B 85.279 197 23 6 2856 3050 103901485 103901293 1.210000e-46 198.0
14 TraesCS5A01G305400 chr4A 84.772 197 24 6 2856 3050 524471708 524471516 5.640000e-45 193.0
15 TraesCS5A01G305400 chr6D 87.349 166 16 5 2850 3013 367991297 367991135 9.430000e-43 185.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G305400 chr5A 514152771 514158285 5514 True 10185.000000 10185 100.000 1 5515 1 chr5A.!!$R1 5514
1 TraesCS5A01G305400 chr5B 489809116 489813910 4794 True 3532.500000 5842 94.152 747 5515 2 chr5B.!!$R1 4768
2 TraesCS5A01G305400 chr5D 408317740 408323938 6198 True 2410.666667 5631 90.952 1 5508 3 chr5D.!!$R1 5507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
216 218 0.036388 TCACCTCCCTGCGTTTCATC 60.036 55.000 0.00 0.00 0.00 2.92 F
391 788 0.038526 TGTTCTTCTCCCTTCGCGTC 60.039 55.000 5.77 0.00 0.00 5.19 F
736 1429 0.099436 AATGAGGACGTACGCGGTAC 59.901 55.000 16.72 9.82 43.45 3.34 F
800 1493 0.106894 GCCAGTAGCCACTATCACCC 59.893 60.000 0.00 0.00 32.21 4.61 F
976 1685 0.675633 CCCAACACCCAAAGCTGAAG 59.324 55.000 0.00 0.00 0.00 3.02 F
1404 2128 0.881796 TCGCGATGAGGGCTATACAG 59.118 55.000 3.71 0.00 0.00 2.74 F
1405 2129 0.881796 CGCGATGAGGGCTATACAGA 59.118 55.000 0.00 0.00 0.00 3.41 F
1406 2130 1.135546 CGCGATGAGGGCTATACAGAG 60.136 57.143 0.00 0.00 0.00 3.35 F
1607 2364 1.204941 ACCCTCAGTTTACTGCGCTAG 59.795 52.381 9.73 7.16 43.46 3.42 F
1671 2430 1.648720 CTTGCGGCATACATTCCCG 59.351 57.895 2.28 0.00 44.58 5.14 F
3599 4376 1.407936 TCCTCTCTGATAGCAGGTGC 58.592 55.000 8.37 0.00 42.53 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1530 2287 0.376152 CGCACAGCAGGATTTAGCAG 59.624 55.000 0.00 0.00 0.00 4.24 R
1926 2691 0.398318 ACCTTCCAGTTGTGGCTCTC 59.602 55.000 0.00 0.00 44.60 3.20 R
2586 3363 4.100344 TGATGGAGCAATTTGGATCAATGG 59.900 41.667 0.00 0.00 0.00 3.16 R
2718 3495 4.878397 AGCAAGTTATCAGATGGTTGCTAC 59.122 41.667 19.68 0.00 46.60 3.58 R
2894 3671 3.333029 TCTTGGATTTGCAGACGATCA 57.667 42.857 0.00 0.00 0.00 2.92 R
3200 3977 3.689347 TGCTTCTGTAATTCACTGCCAT 58.311 40.909 0.00 0.00 0.00 4.40 R
3403 4180 5.304778 TCAAGTAGCACAATAAGTCAGCAA 58.695 37.500 0.00 0.00 0.00 3.91 R
3421 4198 4.803452 TCCAAACTGAAAAGGGATCAAGT 58.197 39.130 0.00 0.00 0.00 3.16 R
3487 4264 1.442769 ACTAATGCCTGCAGACAACG 58.557 50.000 17.39 5.16 0.00 4.10 R
3671 4448 6.696411 AGTGTCAAAATTGAAGGAAAACACA 58.304 32.000 11.90 0.00 39.21 3.72 R
5294 6140 1.065199 TCCATTCTTCAGGCGCTCAAT 60.065 47.619 7.64 0.00 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.224159 AGGGTGGCGAAGACCATGT 61.224 57.895 0.00 0.00 43.01 3.21
34 35 5.129485 AGACCATGTCATAGTGGACCTAAAG 59.871 44.000 0.00 0.00 38.86 1.85
36 37 5.118990 CCATGTCATAGTGGACCTAAAGTG 58.881 45.833 0.00 0.00 37.72 3.16
38 39 5.401531 TGTCATAGTGGACCTAAAGTGTC 57.598 43.478 0.00 0.00 36.97 3.67
45 46 2.701951 TGGACCTAAAGTGTCTTCCGTT 59.298 45.455 0.00 0.00 33.22 4.44
76 78 1.144716 CCTAGCTCGATGCCTGCAA 59.855 57.895 0.00 0.00 44.23 4.08
78 80 1.146637 CTAGCTCGATGCCTGCAATC 58.853 55.000 0.00 0.00 44.23 2.67
107 109 8.965986 GATGTAATCAAAGTAGTTTTTGGGTC 57.034 34.615 0.00 0.00 44.70 4.46
109 111 3.974871 TCAAAGTAGTTTTTGGGTCGC 57.025 42.857 0.00 0.00 38.33 5.19
119 121 0.881159 TTTGGGTCGCGAATCACGTT 60.881 50.000 12.06 0.00 44.60 3.99
120 122 0.881159 TTGGGTCGCGAATCACGTTT 60.881 50.000 12.06 0.00 44.60 3.60
122 124 1.562575 GGGTCGCGAATCACGTTTGT 61.563 55.000 12.06 0.00 44.60 2.83
123 125 0.233848 GGTCGCGAATCACGTTTGTT 59.766 50.000 12.06 0.00 44.60 2.83
125 127 0.509499 TCGCGAATCACGTTTGTTCC 59.491 50.000 6.20 0.00 44.60 3.62
130 132 2.307049 GAATCACGTTTGTTCCGCTTG 58.693 47.619 0.00 0.00 0.00 4.01
135 137 1.281656 GTTTGTTCCGCTTGGTCCG 59.718 57.895 0.00 0.00 0.00 4.79
155 157 2.020836 GACGGGTGCGTGCGATTTAG 62.021 60.000 0.00 0.00 0.00 1.85
156 158 1.807981 CGGGTGCGTGCGATTTAGA 60.808 57.895 0.00 0.00 0.00 2.10
162 164 0.459585 GCGTGCGATTTAGAGGTCCA 60.460 55.000 0.00 0.00 0.00 4.02
163 165 1.278238 CGTGCGATTTAGAGGTCCAC 58.722 55.000 0.00 0.00 0.00 4.02
164 166 1.278238 GTGCGATTTAGAGGTCCACG 58.722 55.000 0.00 0.00 0.00 4.94
165 167 0.892755 TGCGATTTAGAGGTCCACGT 59.107 50.000 0.00 0.00 0.00 4.49
167 169 1.659098 GCGATTTAGAGGTCCACGTTG 59.341 52.381 0.00 0.00 0.00 4.10
182 184 3.009723 CACGTTGAAGATGCCCTTATGT 58.990 45.455 0.00 0.00 34.68 2.29
187 189 5.006746 CGTTGAAGATGCCCTTATGTTCTAC 59.993 44.000 0.00 0.00 34.87 2.59
189 191 5.428253 TGAAGATGCCCTTATGTTCTACAC 58.572 41.667 0.00 0.00 34.68 2.90
207 209 4.106925 GCTGGCCTCACCTCCCTG 62.107 72.222 3.32 0.00 40.22 4.45
212 214 2.750350 CCTCACCTCCCTGCGTTT 59.250 61.111 0.00 0.00 0.00 3.60
213 215 1.376037 CCTCACCTCCCTGCGTTTC 60.376 63.158 0.00 0.00 0.00 2.78
214 216 1.371183 CTCACCTCCCTGCGTTTCA 59.629 57.895 0.00 0.00 0.00 2.69
216 218 0.036388 TCACCTCCCTGCGTTTCATC 60.036 55.000 0.00 0.00 0.00 2.92
217 219 1.026718 CACCTCCCTGCGTTTCATCC 61.027 60.000 0.00 0.00 0.00 3.51
218 220 1.815421 CCTCCCTGCGTTTCATCCG 60.815 63.158 0.00 0.00 0.00 4.18
221 223 2.398554 CCCTGCGTTTCATCCGTGG 61.399 63.158 0.00 0.00 0.00 4.94
228 230 1.196808 CGTTTCATCCGTGGGAGTTTG 59.803 52.381 0.00 0.00 34.05 2.93
239 241 5.828859 TCCGTGGGAGTTTGATTTTAGAAAA 59.171 36.000 0.00 0.00 0.00 2.29
243 245 8.726988 CGTGGGAGTTTGATTTTAGAAAAGATA 58.273 33.333 0.00 0.00 0.00 1.98
281 284 5.114780 ACTTGATCGAGGATGATGTTTGAG 58.885 41.667 14.65 0.00 0.00 3.02
289 292 2.941720 GGATGATGTTTGAGTGCTCCTC 59.058 50.000 0.00 0.00 40.89 3.71
298 301 3.632643 TGAGTGCTCCTCATATTGCAA 57.367 42.857 0.00 0.00 45.34 4.08
306 309 4.795308 GCTCCTCATATTGCAAATGAAGCC 60.795 45.833 22.01 13.06 33.13 4.35
310 313 5.321959 TCATATTGCAAATGAAGCCGAAA 57.678 34.783 16.77 0.00 30.52 3.46
345 348 7.746526 CAAAGACTTTTGAAAAGGAAGAGTG 57.253 36.000 20.48 7.92 45.21 3.51
346 349 5.506686 AGACTTTTGAAAAGGAAGAGTGC 57.493 39.130 20.48 1.63 0.00 4.40
361 758 3.436700 GAGTGCCTCTCTTCTTCTAGC 57.563 52.381 0.00 0.00 39.86 3.42
362 759 2.100749 GAGTGCCTCTCTTCTTCTAGCC 59.899 54.545 0.00 0.00 39.86 3.93
363 760 2.107366 GTGCCTCTCTTCTTCTAGCCT 58.893 52.381 0.00 0.00 0.00 4.58
364 761 3.053245 AGTGCCTCTCTTCTTCTAGCCTA 60.053 47.826 0.00 0.00 0.00 3.93
365 762 3.702045 GTGCCTCTCTTCTTCTAGCCTAA 59.298 47.826 0.00 0.00 0.00 2.69
368 765 4.832823 GCCTCTCTTCTTCTAGCCTAAGAT 59.167 45.833 0.00 0.00 33.17 2.40
376 773 5.978814 TCTTCTAGCCTAAGATGGTTGTTC 58.021 41.667 0.00 0.00 0.00 3.18
381 778 4.837972 AGCCTAAGATGGTTGTTCTTCTC 58.162 43.478 0.00 0.00 35.19 2.87
382 779 3.942115 GCCTAAGATGGTTGTTCTTCTCC 59.058 47.826 0.00 0.00 35.19 3.71
384 781 4.226168 CCTAAGATGGTTGTTCTTCTCCCT 59.774 45.833 0.00 0.00 35.19 4.20
385 782 4.731313 AAGATGGTTGTTCTTCTCCCTT 57.269 40.909 0.00 0.00 0.00 3.95
386 783 4.293662 AGATGGTTGTTCTTCTCCCTTC 57.706 45.455 0.00 0.00 0.00 3.46
387 784 2.543777 TGGTTGTTCTTCTCCCTTCG 57.456 50.000 0.00 0.00 0.00 3.79
388 785 1.157585 GGTTGTTCTTCTCCCTTCGC 58.842 55.000 0.00 0.00 0.00 4.70
390 787 0.391597 TTGTTCTTCTCCCTTCGCGT 59.608 50.000 5.77 0.00 0.00 6.01
391 788 0.038526 TGTTCTTCTCCCTTCGCGTC 60.039 55.000 5.77 0.00 0.00 5.19
392 789 1.071567 GTTCTTCTCCCTTCGCGTCG 61.072 60.000 5.77 0.00 0.00 5.12
393 790 2.202623 CTTCTCCCTTCGCGTCGG 60.203 66.667 5.77 7.79 0.00 4.79
395 792 2.488087 CTTCTCCCTTCGCGTCGGTT 62.488 60.000 5.77 0.00 0.00 4.44
397 794 1.666872 CTCCCTTCGCGTCGGTTTT 60.667 57.895 5.77 0.00 0.00 2.43
398 795 1.226030 CTCCCTTCGCGTCGGTTTTT 61.226 55.000 5.77 0.00 0.00 1.94
423 820 9.941664 TTTTACGATAGATCTTTAGTAACCTCG 57.058 33.333 15.04 7.27 41.38 4.63
424 821 5.999721 ACGATAGATCTTTAGTAACCTCGC 58.000 41.667 0.00 0.00 41.38 5.03
425 822 5.048852 ACGATAGATCTTTAGTAACCTCGCC 60.049 44.000 0.00 0.00 41.38 5.54
426 823 3.712091 AGATCTTTAGTAACCTCGCCG 57.288 47.619 0.00 0.00 0.00 6.46
427 824 3.285484 AGATCTTTAGTAACCTCGCCGA 58.715 45.455 0.00 0.00 0.00 5.54
428 825 2.927553 TCTTTAGTAACCTCGCCGAC 57.072 50.000 0.00 0.00 0.00 4.79
430 827 2.756760 TCTTTAGTAACCTCGCCGACAT 59.243 45.455 0.00 0.00 0.00 3.06
432 829 2.857592 TAGTAACCTCGCCGACATTC 57.142 50.000 0.00 0.00 0.00 2.67
433 830 1.183549 AGTAACCTCGCCGACATTCT 58.816 50.000 0.00 0.00 0.00 2.40
434 831 1.549170 AGTAACCTCGCCGACATTCTT 59.451 47.619 0.00 0.00 0.00 2.52
435 832 1.925185 GTAACCTCGCCGACATTCTTC 59.075 52.381 0.00 0.00 0.00 2.87
436 833 0.320374 AACCTCGCCGACATTCTTCA 59.680 50.000 0.00 0.00 0.00 3.02
437 834 0.320374 ACCTCGCCGACATTCTTCAA 59.680 50.000 0.00 0.00 0.00 2.69
438 835 1.002366 CCTCGCCGACATTCTTCAAG 58.998 55.000 0.00 0.00 0.00 3.02
439 836 0.371645 CTCGCCGACATTCTTCAAGC 59.628 55.000 0.00 0.00 0.00 4.01
440 837 0.320334 TCGCCGACATTCTTCAAGCA 60.320 50.000 0.00 0.00 0.00 3.91
442 839 1.530441 CGCCGACATTCTTCAAGCATG 60.530 52.381 0.00 0.00 0.00 4.06
447 844 2.490903 GACATTCTTCAAGCATGTGCCT 59.509 45.455 7.47 0.00 43.38 4.75
448 845 2.895404 ACATTCTTCAAGCATGTGCCTT 59.105 40.909 1.45 0.00 43.38 4.35
450 847 1.985473 TCTTCAAGCATGTGCCTTGT 58.015 45.000 10.24 0.00 43.38 3.16
451 848 1.881973 TCTTCAAGCATGTGCCTTGTC 59.118 47.619 10.24 0.00 43.38 3.18
452 849 1.610038 CTTCAAGCATGTGCCTTGTCA 59.390 47.619 10.24 1.00 43.38 3.58
453 850 1.913778 TCAAGCATGTGCCTTGTCAT 58.086 45.000 10.24 0.00 43.38 3.06
458 855 2.203800 CATGTGCCTTGTCATGCATC 57.796 50.000 0.00 0.00 40.07 3.91
459 856 1.749063 CATGTGCCTTGTCATGCATCT 59.251 47.619 0.00 0.00 40.07 2.90
460 857 1.913778 TGTGCCTTGTCATGCATCTT 58.086 45.000 0.00 0.00 40.07 2.40
462 859 0.528924 TGCCTTGTCATGCATCTTGC 59.471 50.000 0.00 0.00 45.29 4.01
491 888 5.932619 TTTCTACTGCAGTTCCTATAGCA 57.067 39.130 27.06 2.05 35.43 3.49
492 889 6.485830 TTTCTACTGCAGTTCCTATAGCAT 57.514 37.500 27.06 0.00 36.28 3.79
493 890 5.713792 TCTACTGCAGTTCCTATAGCATC 57.286 43.478 27.06 0.00 36.28 3.91
494 891 5.389520 TCTACTGCAGTTCCTATAGCATCT 58.610 41.667 27.06 0.00 36.28 2.90
496 893 4.701765 ACTGCAGTTCCTATAGCATCTTG 58.298 43.478 15.25 0.00 36.28 3.02
497 894 4.163078 ACTGCAGTTCCTATAGCATCTTGT 59.837 41.667 15.25 0.00 36.28 3.16
499 896 3.812053 GCAGTTCCTATAGCATCTTGTGG 59.188 47.826 0.00 0.00 0.00 4.17
500 897 3.812053 CAGTTCCTATAGCATCTTGTGGC 59.188 47.826 0.00 0.00 0.00 5.01
501 898 3.455910 AGTTCCTATAGCATCTTGTGGCA 59.544 43.478 0.00 0.00 0.00 4.92
503 900 4.011966 TCCTATAGCATCTTGTGGCATG 57.988 45.455 0.00 0.00 0.00 4.06
504 901 3.392285 TCCTATAGCATCTTGTGGCATGT 59.608 43.478 0.00 0.00 0.00 3.21
505 902 4.592778 TCCTATAGCATCTTGTGGCATGTA 59.407 41.667 0.00 0.00 0.00 2.29
506 903 5.249163 TCCTATAGCATCTTGTGGCATGTAT 59.751 40.000 0.00 0.00 0.00 2.29
507 904 5.942236 CCTATAGCATCTTGTGGCATGTATT 59.058 40.000 0.00 0.00 0.00 1.89
509 906 6.720112 ATAGCATCTTGTGGCATGTATTTT 57.280 33.333 0.00 0.00 0.00 1.82
510 907 5.410355 AGCATCTTGTGGCATGTATTTTT 57.590 34.783 0.00 0.00 0.00 1.94
511 908 5.172934 AGCATCTTGTGGCATGTATTTTTG 58.827 37.500 0.00 0.00 0.00 2.44
512 909 4.201744 GCATCTTGTGGCATGTATTTTTGC 60.202 41.667 0.00 0.00 38.14 3.68
514 911 4.558178 TCTTGTGGCATGTATTTTTGCTG 58.442 39.130 0.00 0.00 38.88 4.41
515 912 4.280425 TCTTGTGGCATGTATTTTTGCTGA 59.720 37.500 0.00 0.00 38.88 4.26
516 913 4.597404 TGTGGCATGTATTTTTGCTGAA 57.403 36.364 0.00 0.00 38.88 3.02
517 914 4.558178 TGTGGCATGTATTTTTGCTGAAG 58.442 39.130 0.00 0.00 38.88 3.02
519 916 4.622740 GTGGCATGTATTTTTGCTGAAGTC 59.377 41.667 0.00 0.00 38.88 3.01
522 919 6.377996 TGGCATGTATTTTTGCTGAAGTCTAT 59.622 34.615 0.00 0.00 38.88 1.98
523 920 6.694411 GGCATGTATTTTTGCTGAAGTCTATG 59.306 38.462 0.00 0.00 38.88 2.23
526 923 7.060600 TGTATTTTTGCTGAAGTCTATGACG 57.939 36.000 0.00 0.00 37.67 4.35
528 925 4.990543 TTTTGCTGAAGTCTATGACGTG 57.009 40.909 0.00 0.00 37.67 4.49
529 926 2.654749 TGCTGAAGTCTATGACGTGG 57.345 50.000 0.00 0.00 37.67 4.94
530 927 1.893137 TGCTGAAGTCTATGACGTGGT 59.107 47.619 0.00 0.00 37.67 4.16
532 929 2.164624 GCTGAAGTCTATGACGTGGTCT 59.835 50.000 0.00 0.00 37.67 3.85
533 930 3.367498 GCTGAAGTCTATGACGTGGTCTT 60.367 47.826 0.00 0.00 37.67 3.01
535 932 4.556233 TGAAGTCTATGACGTGGTCTTTG 58.444 43.478 0.00 0.00 37.67 2.77
536 933 2.960819 AGTCTATGACGTGGTCTTTGC 58.039 47.619 0.00 0.00 37.67 3.68
539 936 3.684788 GTCTATGACGTGGTCTTTGCATT 59.315 43.478 0.00 0.00 33.15 3.56
540 937 3.932710 TCTATGACGTGGTCTTTGCATTC 59.067 43.478 0.00 0.00 33.15 2.67
541 938 0.865111 TGACGTGGTCTTTGCATTCG 59.135 50.000 0.00 0.00 33.15 3.34
542 939 0.452784 GACGTGGTCTTTGCATTCGC 60.453 55.000 0.00 0.00 39.24 4.70
543 940 0.884704 ACGTGGTCTTTGCATTCGCT 60.885 50.000 0.00 0.00 39.64 4.93
544 941 0.179215 CGTGGTCTTTGCATTCGCTC 60.179 55.000 0.00 0.00 39.64 5.03
545 942 0.169009 GTGGTCTTTGCATTCGCTCC 59.831 55.000 0.00 0.00 39.64 4.70
546 943 0.250684 TGGTCTTTGCATTCGCTCCA 60.251 50.000 0.00 0.00 39.64 3.86
548 945 1.474077 GGTCTTTGCATTCGCTCCATT 59.526 47.619 0.00 0.00 39.64 3.16
549 946 2.094545 GGTCTTTGCATTCGCTCCATTT 60.095 45.455 0.00 0.00 39.64 2.32
550 947 3.578688 GTCTTTGCATTCGCTCCATTTT 58.421 40.909 0.00 0.00 39.64 1.82
551 948 3.609807 GTCTTTGCATTCGCTCCATTTTC 59.390 43.478 0.00 0.00 39.64 2.29
552 949 3.255395 TCTTTGCATTCGCTCCATTTTCA 59.745 39.130 0.00 0.00 39.64 2.69
553 950 2.634982 TGCATTCGCTCCATTTTCAC 57.365 45.000 0.00 0.00 39.64 3.18
554 951 1.135717 TGCATTCGCTCCATTTTCACG 60.136 47.619 0.00 0.00 39.64 4.35
556 953 2.774007 CATTCGCTCCATTTTCACGAC 58.226 47.619 0.00 0.00 31.61 4.34
557 954 1.872388 TTCGCTCCATTTTCACGACA 58.128 45.000 0.00 0.00 31.61 4.35
558 955 1.872388 TCGCTCCATTTTCACGACAA 58.128 45.000 0.00 0.00 0.00 3.18
560 957 2.811431 TCGCTCCATTTTCACGACAATT 59.189 40.909 0.00 0.00 0.00 2.32
561 958 3.252215 TCGCTCCATTTTCACGACAATTT 59.748 39.130 0.00 0.00 0.00 1.82
563 960 4.613622 CGCTCCATTTTCACGACAATTTCT 60.614 41.667 0.00 0.00 0.00 2.52
564 961 5.222631 GCTCCATTTTCACGACAATTTCTT 58.777 37.500 0.00 0.00 0.00 2.52
565 962 5.343325 GCTCCATTTTCACGACAATTTCTTC 59.657 40.000 0.00 0.00 0.00 2.87
568 965 7.432869 TCCATTTTCACGACAATTTCTTCAAT 58.567 30.769 0.00 0.00 0.00 2.57
569 966 7.381948 TCCATTTTCACGACAATTTCTTCAATG 59.618 33.333 0.00 0.00 0.00 2.82
571 968 8.918658 CATTTTCACGACAATTTCTTCAATGAT 58.081 29.630 0.00 0.00 0.00 2.45
573 970 6.799926 TCACGACAATTTCTTCAATGATGA 57.200 33.333 0.00 0.00 0.00 2.92
574 971 6.834876 TCACGACAATTTCTTCAATGATGAG 58.165 36.000 0.00 0.00 36.78 2.90
576 973 5.124457 ACGACAATTTCTTCAATGATGAGGG 59.876 40.000 0.00 0.00 36.78 4.30
579 976 6.012113 ACAATTTCTTCAATGATGAGGGTGA 58.988 36.000 0.00 0.00 36.78 4.02
580 977 6.071728 ACAATTTCTTCAATGATGAGGGTGAC 60.072 38.462 0.00 0.00 36.78 3.67
581 978 4.639078 TTCTTCAATGATGAGGGTGACA 57.361 40.909 0.00 0.00 36.78 3.58
592 989 3.754965 TGAGGGTGACAAAGAAAGATGG 58.245 45.455 0.00 0.00 0.00 3.51
595 992 3.652869 AGGGTGACAAAGAAAGATGGAGA 59.347 43.478 0.00 0.00 0.00 3.71
597 994 5.488919 AGGGTGACAAAGAAAGATGGAGATA 59.511 40.000 0.00 0.00 0.00 1.98
620 1017 5.316987 AGAAAGACTTTAGGGACAATGGTG 58.683 41.667 0.00 0.00 0.00 4.17
622 1019 5.836024 AAGACTTTAGGGACAATGGTGTA 57.164 39.130 0.00 0.00 38.41 2.90
623 1020 5.836024 AGACTTTAGGGACAATGGTGTAA 57.164 39.130 0.00 0.00 38.41 2.41
625 1022 6.607019 AGACTTTAGGGACAATGGTGTAAAA 58.393 36.000 0.00 0.00 38.41 1.52
678 1083 6.817765 ATTTGTATCGGTGTTTGTCAGATT 57.182 33.333 0.00 0.00 0.00 2.40
687 1092 5.748152 CGGTGTTTGTCAGATTTGTTGAAAT 59.252 36.000 0.00 0.00 34.29 2.17
689 1094 6.413269 GTGTTTGTCAGATTTGTTGAAATGC 58.587 36.000 0.00 0.00 31.58 3.56
692 1097 3.244976 GTCAGATTTGTTGAAATGCCCG 58.755 45.455 0.00 0.00 31.58 6.13
693 1098 1.994779 CAGATTTGTTGAAATGCCCGC 59.005 47.619 0.00 0.00 31.58 6.13
695 1100 0.389687 ATTTGTTGAAATGCCCGCCG 60.390 50.000 0.00 0.00 30.17 6.46
696 1101 1.739338 TTTGTTGAAATGCCCGCCGT 61.739 50.000 0.00 0.00 0.00 5.68
697 1102 1.739338 TTGTTGAAATGCCCGCCGTT 61.739 50.000 0.00 0.00 0.00 4.44
699 1104 0.241481 GTTGAAATGCCCGCCGTTTA 59.759 50.000 0.00 0.00 32.91 2.01
700 1105 1.135228 GTTGAAATGCCCGCCGTTTAT 60.135 47.619 0.00 0.00 32.91 1.40
702 1107 2.577700 TGAAATGCCCGCCGTTTATAT 58.422 42.857 0.00 0.00 32.91 0.86
705 1110 5.489249 TGAAATGCCCGCCGTTTATATATA 58.511 37.500 0.00 0.00 32.91 0.86
707 1112 6.600032 TGAAATGCCCGCCGTTTATATATATT 59.400 34.615 0.00 0.00 32.91 1.28
708 1113 7.121463 TGAAATGCCCGCCGTTTATATATATTT 59.879 33.333 0.00 0.00 32.91 1.40
711 1116 7.918536 TGCCCGCCGTTTATATATATTTTTA 57.081 32.000 0.00 0.00 0.00 1.52
712 1117 8.332996 TGCCCGCCGTTTATATATATTTTTAA 57.667 30.769 0.00 0.00 0.00 1.52
714 1119 9.623350 GCCCGCCGTTTATATATATTTTTAAAA 57.377 29.630 0.00 0.00 0.00 1.52
730 1423 8.944212 ATTTTTAAAAAGAATGAGGACGTACG 57.056 30.769 15.01 15.01 0.00 3.67
731 1424 5.520022 TTAAAAAGAATGAGGACGTACGC 57.480 39.130 16.72 8.19 0.00 4.42
732 1425 1.625616 AAAGAATGAGGACGTACGCG 58.374 50.000 16.72 3.53 44.93 6.01
733 1426 0.179145 AAGAATGAGGACGTACGCGG 60.179 55.000 16.72 0.00 43.45 6.46
736 1429 0.099436 AATGAGGACGTACGCGGTAC 59.901 55.000 16.72 9.82 43.45 3.34
779 1472 2.046285 CCGGATTCCCTGCAACACC 61.046 63.158 0.00 0.00 0.00 4.16
792 1485 1.073199 AACACCAGCCAGTAGCCAC 59.927 57.895 0.00 0.00 45.47 5.01
796 1489 1.123928 ACCAGCCAGTAGCCACTATC 58.876 55.000 0.00 0.00 45.47 2.08
797 1490 1.123077 CCAGCCAGTAGCCACTATCA 58.877 55.000 0.00 0.00 45.47 2.15
799 1492 1.123928 AGCCAGTAGCCACTATCACC 58.876 55.000 0.00 0.00 45.47 4.02
800 1493 0.106894 GCCAGTAGCCACTATCACCC 59.893 60.000 0.00 0.00 32.21 4.61
801 1494 1.794714 CCAGTAGCCACTATCACCCT 58.205 55.000 0.00 0.00 32.21 4.34
802 1495 2.119495 CCAGTAGCCACTATCACCCTT 58.881 52.381 0.00 0.00 32.21 3.95
803 1496 3.305720 CCAGTAGCCACTATCACCCTTA 58.694 50.000 0.00 0.00 32.21 2.69
805 1498 4.348168 CCAGTAGCCACTATCACCCTTATT 59.652 45.833 0.00 0.00 32.21 1.40
806 1499 5.542635 CCAGTAGCCACTATCACCCTTATTA 59.457 44.000 0.00 0.00 32.21 0.98
807 1500 6.042781 CCAGTAGCCACTATCACCCTTATTAA 59.957 42.308 0.00 0.00 32.21 1.40
808 1501 7.419750 CCAGTAGCCACTATCACCCTTATTAAA 60.420 40.741 0.00 0.00 32.21 1.52
809 1502 7.657761 CAGTAGCCACTATCACCCTTATTAAAG 59.342 40.741 0.00 0.00 32.21 1.85
810 1503 6.824958 AGCCACTATCACCCTTATTAAAGA 57.175 37.500 0.00 0.00 34.37 2.52
811 1504 7.208064 AGCCACTATCACCCTTATTAAAGAA 57.792 36.000 0.00 0.00 34.37 2.52
812 1505 7.816411 AGCCACTATCACCCTTATTAAAGAAT 58.184 34.615 0.00 0.00 34.37 2.40
813 1506 7.721399 AGCCACTATCACCCTTATTAAAGAATG 59.279 37.037 0.00 0.00 34.37 2.67
814 1507 7.719633 GCCACTATCACCCTTATTAAAGAATGA 59.280 37.037 0.00 0.00 34.37 2.57
815 1508 9.627123 CCACTATCACCCTTATTAAAGAATGAA 57.373 33.333 0.00 0.00 34.37 2.57
859 1566 1.514873 GCTTTCCGCATTTCGCCAG 60.515 57.895 0.00 0.00 38.92 4.85
860 1567 1.137404 CTTTCCGCATTTCGCCAGG 59.863 57.895 0.00 0.00 37.30 4.45
861 1568 1.302913 TTTCCGCATTTCGCCAGGA 60.303 52.632 0.00 0.00 37.30 3.86
976 1685 0.675633 CCCAACACCCAAAGCTGAAG 59.324 55.000 0.00 0.00 0.00 3.02
1160 1881 1.134401 CAATCTGGGCGTGGTATGAGT 60.134 52.381 0.00 0.00 0.00 3.41
1195 1916 2.463876 CGTGCGCTCTGAGATGAATTA 58.536 47.619 9.73 0.00 0.00 1.40
1199 1920 5.347093 CGTGCGCTCTGAGATGAATTATTAT 59.653 40.000 9.73 0.00 0.00 1.28
1202 1923 7.064371 GTGCGCTCTGAGATGAATTATTATGAT 59.936 37.037 9.73 0.00 0.00 2.45
1222 1943 7.778185 ATGATATACCAGTACCTTGTAGTCC 57.222 40.000 0.00 0.00 0.00 3.85
1228 1949 3.056749 CCAGTACCTTGTAGTCCACTGAC 60.057 52.174 0.00 0.00 42.09 3.51
1305 2026 4.924625 ACTACTGTGGTACATCTGTCTCT 58.075 43.478 0.00 0.00 44.52 3.10
1306 2027 6.063496 ACTACTGTGGTACATCTGTCTCTA 57.937 41.667 0.00 0.00 44.52 2.43
1354 2078 7.202016 TCAAGTTACTGTGTTTGATTCATCC 57.798 36.000 0.00 0.00 0.00 3.51
1361 2085 6.248433 ACTGTGTTTGATTCATCCCAGTTAT 58.752 36.000 0.00 0.00 0.00 1.89
1371 2095 8.204160 TGATTCATCCCAGTTATACTTGTACTG 58.796 37.037 0.00 0.00 39.13 2.74
1372 2096 7.490657 TTCATCCCAGTTATACTTGTACTGT 57.509 36.000 0.00 0.00 38.04 3.55
1373 2097 8.598202 TTCATCCCAGTTATACTTGTACTGTA 57.402 34.615 0.00 0.00 38.04 2.74
1374 2098 8.004087 TCATCCCAGTTATACTTGTACTGTAC 57.996 38.462 10.98 10.98 38.04 2.90
1375 2099 7.837689 TCATCCCAGTTATACTTGTACTGTACT 59.162 37.037 17.98 1.87 38.04 2.73
1388 2112 6.880822 TGTACTGTACTGTTTATGATTCGC 57.119 37.500 17.98 0.00 0.00 4.70
1393 2117 5.344884 TGTACTGTTTATGATTCGCGATGA 58.655 37.500 10.88 0.00 0.00 2.92
1404 2128 0.881796 TCGCGATGAGGGCTATACAG 59.118 55.000 3.71 0.00 0.00 2.74
1405 2129 0.881796 CGCGATGAGGGCTATACAGA 59.118 55.000 0.00 0.00 0.00 3.41
1406 2130 1.135546 CGCGATGAGGGCTATACAGAG 60.136 57.143 0.00 0.00 0.00 3.35
1407 2131 1.403514 GCGATGAGGGCTATACAGAGC 60.404 57.143 0.00 0.00 42.05 4.09
1408 2132 2.166829 CGATGAGGGCTATACAGAGCT 58.833 52.381 0.00 0.00 42.43 4.09
1450 2205 5.008331 AGTGTTTGCATGATCACTTCAGAT 58.992 37.500 0.00 0.00 37.81 2.90
1512 2269 3.181523 CGTTGCACTGATCACTCTTGATG 60.182 47.826 0.00 0.00 42.95 3.07
1530 2287 7.697691 TCTTGATGTCTGTCAAAGTTTTCTTC 58.302 34.615 0.00 0.00 39.48 2.87
1541 2298 7.285401 TGTCAAAGTTTTCTTCTGCTAAATCCT 59.715 33.333 0.00 0.00 39.48 3.24
1544 2301 5.320277 AGTTTTCTTCTGCTAAATCCTGCT 58.680 37.500 0.00 0.00 0.00 4.24
1566 2323 5.127693 TGTGCGGTTAAAACTTGCAATAT 57.872 34.783 0.00 0.00 40.15 1.28
1579 2336 3.758755 TGCAATATTTGTGGCCAAACA 57.241 38.095 7.24 0.00 43.03 2.83
1607 2364 1.204941 ACCCTCAGTTTACTGCGCTAG 59.795 52.381 9.73 7.16 43.46 3.42
1623 2381 2.488528 CGCTAGTATCTGTACCCTCCCA 60.489 54.545 0.00 0.00 0.00 4.37
1671 2430 1.648720 CTTGCGGCATACATTCCCG 59.351 57.895 2.28 0.00 44.58 5.14
1802 2567 2.439507 AGCAGACTTGAACTCCTTTGGA 59.560 45.455 0.00 0.00 0.00 3.53
1871 2636 2.724977 TGTTAGAGTGGAGCAGAACG 57.275 50.000 0.00 0.00 0.00 3.95
1895 2660 7.015877 CGAGTTCTTGTTTTTATGCTACTTCC 58.984 38.462 0.00 0.00 0.00 3.46
1934 2699 5.934625 TCTATTTTCTGAACTTGAGAGCCAC 59.065 40.000 0.00 0.00 0.00 5.01
1974 2739 6.055588 GCTGTAGGTAAGCATAAATCAGGAA 58.944 40.000 0.00 0.00 40.52 3.36
1991 2758 8.421249 AATCAGGAAGAAATGTTAATTGTCCA 57.579 30.769 0.00 0.00 29.98 4.02
2036 2803 3.071479 GTTTGGCGTTAGGACTTCATCA 58.929 45.455 0.00 0.00 0.00 3.07
2267 3035 7.765695 ACTTGGTCATATTTCTTGTGATGTT 57.234 32.000 0.00 0.00 0.00 2.71
2268 3036 7.596494 ACTTGGTCATATTTCTTGTGATGTTG 58.404 34.615 0.00 0.00 0.00 3.33
2269 3037 7.231317 ACTTGGTCATATTTCTTGTGATGTTGT 59.769 33.333 0.00 0.00 0.00 3.32
2280 3048 6.230472 TCTTGTGATGTTGTAGTGCACTAAT 58.770 36.000 27.61 17.34 0.00 1.73
2294 3062 9.210426 GTAGTGCACTAATTTCGAAATTATGTG 57.790 33.333 34.40 34.40 39.40 3.21
2315 3084 6.542821 TGTGTTCTTTCATCCAGGAAATAGT 58.457 36.000 0.00 0.00 36.29 2.12
2483 3260 5.474876 GGAGCATTTCCCATTTATCCTAGTG 59.525 44.000 0.00 0.00 40.37 2.74
2541 3318 4.595350 ACTTCCTTTAGCCTCTCAACTTCT 59.405 41.667 0.00 0.00 0.00 2.85
2586 3363 7.128331 CACAAAATGACGGATGAGATCATTAC 58.872 38.462 0.00 0.00 41.17 1.89
2718 3495 6.586463 TCACTTTCGTATCTTCTAGCAACAAG 59.414 38.462 0.00 0.00 0.00 3.16
2846 3623 8.276252 TGTTAAGCAGGTTTATGGAAGAATAC 57.724 34.615 0.00 0.00 0.00 1.89
2855 3632 8.122481 AGGTTTATGGAAGAATACCCTGATTTT 58.878 33.333 0.00 0.00 0.00 1.82
2894 3671 5.476091 TCAAAAATATTTCCCCGTTGCTT 57.524 34.783 0.10 0.00 0.00 3.91
3195 3972 7.041107 GCTATTTTCCAATGCAGGTCATAAAA 58.959 34.615 0.00 0.00 34.33 1.52
3200 3977 6.602410 TCCAATGCAGGTCATAAAATTCAA 57.398 33.333 0.00 0.00 34.33 2.69
3353 4130 6.411376 ACATCAACTGAATGTTCGGGTATTA 58.589 36.000 6.54 0.00 36.63 0.98
3354 4131 7.054124 ACATCAACTGAATGTTCGGGTATTAT 58.946 34.615 6.54 0.00 36.63 1.28
3403 4180 4.019681 TCACCATTCCTACGAAGATGGTTT 60.020 41.667 4.23 0.00 38.69 3.27
3421 4198 4.824537 TGGTTTTGCTGACTTATTGTGCTA 59.175 37.500 0.00 0.00 0.00 3.49
3444 4221 5.208121 ACTTGATCCCTTTTCAGTTTGGAA 58.792 37.500 0.00 0.00 0.00 3.53
3599 4376 1.407936 TCCTCTCTGATAGCAGGTGC 58.592 55.000 8.37 0.00 42.53 5.01
3627 4404 6.843333 TGGAAGGAAATGGGCATATTTGATAA 59.157 34.615 4.04 0.00 30.78 1.75
3628 4405 7.513436 TGGAAGGAAATGGGCATATTTGATAAT 59.487 33.333 4.04 0.00 30.78 1.28
3629 4406 9.034800 GGAAGGAAATGGGCATATTTGATAATA 57.965 33.333 4.04 0.00 30.78 0.98
3630 4407 9.860898 GAAGGAAATGGGCATATTTGATAATAC 57.139 33.333 4.04 0.00 30.78 1.89
3631 4408 8.954834 AGGAAATGGGCATATTTGATAATACA 57.045 30.769 4.04 0.00 30.78 2.29
3671 4448 7.870826 TGTTTTGACGATTAATCACATCTTGT 58.129 30.769 15.57 3.23 0.00 3.16
3697 4474 6.811170 GTGTTTTCCTTCAATTTTGACACTCA 59.189 34.615 0.00 0.00 36.83 3.41
3709 4486 1.293924 GACACTCATGAGGCATTCCG 58.706 55.000 26.08 8.12 37.47 4.30
3754 4531 4.678309 GCAGATCTGTACCTGTGAACTACC 60.678 50.000 23.38 0.00 33.19 3.18
3992 4783 8.564574 GTTTGGAAGTATATATTTTCGGCATGA 58.435 33.333 0.00 0.00 0.00 3.07
4033 4824 6.818644 TCATTCATCTGCTAAAGTGTACTTCC 59.181 38.462 0.00 0.00 34.61 3.46
4252 5045 6.976349 TGTATGGTTTGTGCTATTAGTAGTCG 59.024 38.462 0.00 0.00 0.00 4.18
4278 5071 4.982916 ACAGCTACAAACAGAGTAACTTCG 59.017 41.667 0.00 0.00 0.00 3.79
4323 5116 8.567948 ACACTTACAGTCACCATTATCTTTTTG 58.432 33.333 0.00 0.00 0.00 2.44
4324 5117 8.567948 CACTTACAGTCACCATTATCTTTTTGT 58.432 33.333 0.00 0.00 0.00 2.83
4330 5123 6.701400 AGTCACCATTATCTTTTTGTTGTTGC 59.299 34.615 0.00 0.00 0.00 4.17
4347 5140 1.355971 TGCGCATTCTACTTCGGAAC 58.644 50.000 5.66 0.00 0.00 3.62
4354 5148 5.444218 CGCATTCTACTTCGGAACTGTAAAC 60.444 44.000 0.00 0.00 0.00 2.01
4385 5179 1.972660 ATACGCAGGTTCAGGAGGGC 61.973 60.000 0.00 0.00 0.00 5.19
4388 5182 2.900106 GCAGGTTCAGGAGGGCAGT 61.900 63.158 0.00 0.00 0.00 4.40
4397 5191 1.997874 GGAGGGCAGTGGAGACCAT 60.998 63.158 0.00 0.00 35.28 3.55
4427 5221 4.159135 GTGGACCTAAACTATCTTCCGTCA 59.841 45.833 0.00 0.00 0.00 4.35
4512 5306 2.037381 GAGTCGAAGAAAGGGAAGGTGT 59.963 50.000 0.00 0.00 39.69 4.16
4513 5307 2.143925 GTCGAAGAAAGGGAAGGTGTG 58.856 52.381 0.00 0.00 39.69 3.82
4524 5318 3.910627 AGGGAAGGTGTGAACTTAGTCAT 59.089 43.478 0.00 0.00 0.00 3.06
4575 5369 0.521291 CGACAACATCCGCACCATTT 59.479 50.000 0.00 0.00 0.00 2.32
4624 5418 8.316640 GTTGAATCAACAATCTGTCTAGAAGT 57.683 34.615 20.08 0.00 43.09 3.01
4629 5423 4.899352 ACAATCTGTCTAGAAGTGGCTT 57.101 40.909 0.00 0.00 36.32 4.35
4659 5453 4.083908 GCCTAGAATCGTAGAGTACTTCGG 60.084 50.000 0.00 0.00 43.63 4.30
4689 5492 4.202202 GCAGGCAGAGATGTGTACTAATCT 60.202 45.833 9.73 9.73 35.84 2.40
4700 5503 2.426024 TGTACTAATCTGGGAGCGACAC 59.574 50.000 0.00 0.00 0.00 3.67
4784 5626 2.042026 TGGCCCTGTAGACACTGTACTA 59.958 50.000 0.00 0.00 0.00 1.82
4833 5675 0.614812 TGCTCTGCATAGACCAGCAA 59.385 50.000 2.78 0.00 40.73 3.91
4848 5690 2.169842 GCAACCTGCTTCTCTCTGC 58.830 57.895 0.00 0.00 40.96 4.26
4869 5711 7.038048 TCTGCATCTACTCTGTTCTTTGTATG 58.962 38.462 0.00 0.00 0.00 2.39
5108 5953 2.353889 CTGCATCTTGATGTCCCTTTCG 59.646 50.000 11.61 0.00 0.00 3.46
5190 6035 1.298602 GGCACAGTTTTGGCCTTTTG 58.701 50.000 3.32 0.00 44.32 2.44
5200 6045 3.676291 TTGGCCTTTTGTTATTCAGGC 57.324 42.857 3.32 0.06 41.32 4.85
5273 6119 1.197036 GTCTCGGCACCTTTAGTTTGC 59.803 52.381 0.00 0.00 35.40 3.68
5315 6161 0.107993 TGAGCGCCTGAAGAATGGAG 60.108 55.000 2.29 0.00 0.00 3.86
5394 6240 1.515304 GACGAAGACGAGAGCCTGC 60.515 63.158 0.00 0.00 42.66 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.205074 CACTATGACATGGTCTTCGCC 58.795 52.381 0.74 0.00 33.15 5.54
8 9 3.452627 AGGTCCACTATGACATGGTCTTC 59.547 47.826 0.74 0.00 36.97 2.87
9 10 3.454858 AGGTCCACTATGACATGGTCTT 58.545 45.455 0.74 0.00 36.97 3.01
18 19 5.187186 GGAAGACACTTTAGGTCCACTATGA 59.813 44.000 0.00 0.00 35.89 2.15
34 35 3.621715 ACTTCTTTGACAACGGAAGACAC 59.378 43.478 24.78 0.00 38.64 3.67
36 37 4.260661 GGAACTTCTTTGACAACGGAAGAC 60.261 45.833 24.78 19.23 38.64 3.01
38 39 3.877508 AGGAACTTCTTTGACAACGGAAG 59.122 43.478 19.94 19.94 40.41 3.46
45 46 3.572682 TCGAGCTAGGAACTTCTTTGACA 59.427 43.478 0.00 0.00 41.75 3.58
92 94 2.243602 TCGCGACCCAAAAACTACTT 57.756 45.000 3.71 0.00 0.00 2.24
100 102 0.881159 AACGTGATTCGCGACCCAAA 60.881 50.000 25.00 0.00 44.19 3.28
105 107 1.577221 GAACAAACGTGATTCGCGAC 58.423 50.000 25.00 0.00 44.19 5.19
107 109 0.784250 CGGAACAAACGTGATTCGCG 60.784 55.000 17.47 17.47 44.19 5.87
109 111 0.511221 AGCGGAACAAACGTGATTCG 59.489 50.000 0.00 0.00 46.00 3.34
119 121 2.281208 CCGGACCAAGCGGAACAA 60.281 61.111 0.00 0.00 35.59 2.83
120 122 3.235481 TCCGGACCAAGCGGAACA 61.235 61.111 0.00 0.00 35.59 3.18
122 124 4.367023 CGTCCGGACCAAGCGGAA 62.367 66.667 28.52 0.00 35.59 4.30
141 143 0.645868 GACCTCTAAATCGCACGCAC 59.354 55.000 0.00 0.00 0.00 5.34
145 147 1.278238 CGTGGACCTCTAAATCGCAC 58.722 55.000 0.00 0.00 0.00 5.34
146 148 0.892755 ACGTGGACCTCTAAATCGCA 59.107 50.000 0.00 0.00 0.00 5.10
149 151 4.817517 TCTTCAACGTGGACCTCTAAATC 58.182 43.478 0.00 0.00 0.00 2.17
150 152 4.884668 TCTTCAACGTGGACCTCTAAAT 57.115 40.909 0.00 0.00 0.00 1.40
155 157 1.079503 GCATCTTCAACGTGGACCTC 58.920 55.000 0.00 0.00 0.00 3.85
156 158 0.321653 GGCATCTTCAACGTGGACCT 60.322 55.000 0.00 0.00 0.00 3.85
162 164 3.350219 ACATAAGGGCATCTTCAACGT 57.650 42.857 0.00 0.00 36.93 3.99
163 165 3.941483 AGAACATAAGGGCATCTTCAACG 59.059 43.478 0.00 0.00 36.93 4.10
164 166 5.880332 TGTAGAACATAAGGGCATCTTCAAC 59.120 40.000 0.00 0.00 36.93 3.18
165 167 5.880332 GTGTAGAACATAAGGGCATCTTCAA 59.120 40.000 0.00 0.00 36.93 2.69
167 169 4.508124 CGTGTAGAACATAAGGGCATCTTC 59.492 45.833 0.00 0.00 36.93 2.87
182 184 1.292223 GTGAGGCCAGCGTGTAGAA 59.708 57.895 5.01 0.00 0.00 2.10
187 189 4.767255 GGAGGTGAGGCCAGCGTG 62.767 72.222 5.01 0.00 44.94 5.34
207 209 0.953960 AACTCCCACGGATGAAACGC 60.954 55.000 0.00 0.00 34.00 4.84
209 211 2.500229 TCAAACTCCCACGGATGAAAC 58.500 47.619 0.00 0.00 0.00 2.78
212 214 3.433306 AAATCAAACTCCCACGGATGA 57.567 42.857 0.00 0.00 0.00 2.92
213 215 4.941263 TCTAAAATCAAACTCCCACGGATG 59.059 41.667 0.00 0.00 0.00 3.51
214 216 5.174037 TCTAAAATCAAACTCCCACGGAT 57.826 39.130 0.00 0.00 0.00 4.18
216 218 5.699097 TTTCTAAAATCAAACTCCCACGG 57.301 39.130 0.00 0.00 0.00 4.94
217 219 6.966021 TCTTTTCTAAAATCAAACTCCCACG 58.034 36.000 0.00 0.00 0.00 4.94
239 241 7.544804 TCAAGTACTCCACATATGCATATCT 57.455 36.000 16.46 2.10 0.00 1.98
243 245 5.011023 TCGATCAAGTACTCCACATATGCAT 59.989 40.000 3.79 3.79 0.00 3.96
281 284 4.906065 TCATTTGCAATATGAGGAGCAC 57.094 40.909 15.74 0.00 36.62 4.40
289 292 5.577945 ACTTTTCGGCTTCATTTGCAATATG 59.422 36.000 0.00 7.56 0.00 1.78
298 301 1.541588 GGCAGACTTTTCGGCTTCATT 59.458 47.619 0.00 0.00 42.17 2.57
306 309 3.499918 AGTCTTTGATGGCAGACTTTTCG 59.500 43.478 0.88 0.00 46.31 3.46
342 345 8.509602 TCTTAGGCTAGAAGAAGAGAGGCACT 62.510 46.154 0.00 0.00 36.97 4.40
343 346 2.107366 AGGCTAGAAGAAGAGAGGCAC 58.893 52.381 0.00 0.00 36.97 5.01
344 347 2.541233 AGGCTAGAAGAAGAGAGGCA 57.459 50.000 0.00 0.00 36.97 4.75
345 348 4.211920 TCTTAGGCTAGAAGAAGAGAGGC 58.788 47.826 0.00 0.00 29.97 4.70
346 349 5.243730 CCATCTTAGGCTAGAAGAAGAGAGG 59.756 48.000 3.95 4.40 36.54 3.69
358 755 5.104900 GGAGAAGAACAACCATCTTAGGCTA 60.105 44.000 0.00 0.00 37.26 3.93
360 757 3.942115 GGAGAAGAACAACCATCTTAGGC 59.058 47.826 0.00 0.00 37.26 3.93
361 758 4.226168 AGGGAGAAGAACAACCATCTTAGG 59.774 45.833 0.00 0.00 37.26 2.69
362 759 5.428184 AGGGAGAAGAACAACCATCTTAG 57.572 43.478 0.00 0.00 37.26 2.18
363 760 5.568825 CGAAGGGAGAAGAACAACCATCTTA 60.569 44.000 0.00 0.00 37.26 2.10
364 761 4.657013 GAAGGGAGAAGAACAACCATCTT 58.343 43.478 0.00 0.00 39.76 2.40
365 762 3.307059 CGAAGGGAGAAGAACAACCATCT 60.307 47.826 0.00 0.00 0.00 2.90
368 765 1.542547 GCGAAGGGAGAAGAACAACCA 60.543 52.381 0.00 0.00 0.00 3.67
376 773 2.202623 CCGACGCGAAGGGAGAAG 60.203 66.667 15.93 0.00 46.37 2.85
397 794 9.941664 CGAGGTTACTAAAGATCTATCGTAAAA 57.058 33.333 0.00 0.00 0.00 1.52
398 795 8.072567 GCGAGGTTACTAAAGATCTATCGTAAA 58.927 37.037 0.00 0.00 0.00 2.01
399 796 7.308229 GGCGAGGTTACTAAAGATCTATCGTAA 60.308 40.741 0.00 1.29 0.00 3.18
400 797 6.148480 GGCGAGGTTACTAAAGATCTATCGTA 59.852 42.308 0.00 0.00 0.00 3.43
401 798 5.048852 GGCGAGGTTACTAAAGATCTATCGT 60.049 44.000 0.00 0.00 0.00 3.73
403 800 5.180868 TCGGCGAGGTTACTAAAGATCTATC 59.819 44.000 4.99 0.00 0.00 2.08
404 801 5.048852 GTCGGCGAGGTTACTAAAGATCTAT 60.049 44.000 11.20 0.00 0.00 1.98
405 802 4.274459 GTCGGCGAGGTTACTAAAGATCTA 59.726 45.833 11.20 0.00 0.00 1.98
407 804 3.181493 TGTCGGCGAGGTTACTAAAGATC 60.181 47.826 11.20 0.00 0.00 2.75
409 806 2.161855 TGTCGGCGAGGTTACTAAAGA 58.838 47.619 11.20 0.00 0.00 2.52
410 807 2.642139 TGTCGGCGAGGTTACTAAAG 57.358 50.000 11.20 0.00 0.00 1.85
411 808 3.194116 AGAATGTCGGCGAGGTTACTAAA 59.806 43.478 11.20 0.00 0.00 1.85
412 809 2.756760 AGAATGTCGGCGAGGTTACTAA 59.243 45.455 11.20 0.00 0.00 2.24
413 810 2.372264 AGAATGTCGGCGAGGTTACTA 58.628 47.619 11.20 0.00 0.00 1.82
415 812 1.925185 GAAGAATGTCGGCGAGGTTAC 59.075 52.381 11.20 0.00 0.00 2.50
417 814 0.320374 TGAAGAATGTCGGCGAGGTT 59.680 50.000 11.20 8.29 0.00 3.50
418 815 0.320374 TTGAAGAATGTCGGCGAGGT 59.680 50.000 11.20 0.00 0.00 3.85
420 817 0.371645 GCTTGAAGAATGTCGGCGAG 59.628 55.000 11.20 0.00 0.00 5.03
421 818 0.320334 TGCTTGAAGAATGTCGGCGA 60.320 50.000 4.99 4.99 0.00 5.54
422 819 0.729116 ATGCTTGAAGAATGTCGGCG 59.271 50.000 0.00 0.00 0.00 6.46
423 820 1.470098 ACATGCTTGAAGAATGTCGGC 59.530 47.619 13.03 0.00 40.45 5.54
424 821 2.730090 GCACATGCTTGAAGAATGTCGG 60.730 50.000 15.80 7.46 40.45 4.79
425 822 2.512885 GCACATGCTTGAAGAATGTCG 58.487 47.619 15.80 12.25 40.45 4.35
426 823 2.490903 AGGCACATGCTTGAAGAATGTC 59.509 45.455 15.80 10.62 40.45 3.06
427 824 2.522185 AGGCACATGCTTGAAGAATGT 58.478 42.857 13.03 13.03 45.27 2.71
428 825 3.250744 CAAGGCACATGCTTGAAGAATG 58.749 45.455 11.61 11.61 37.28 2.67
430 827 2.294233 GACAAGGCACATGCTTGAAGAA 59.706 45.455 15.74 0.00 41.70 2.52
432 829 1.610038 TGACAAGGCACATGCTTGAAG 59.390 47.619 15.74 0.00 41.70 3.02
433 830 1.689984 TGACAAGGCACATGCTTGAA 58.310 45.000 15.74 4.02 41.70 2.69
434 831 1.542472 CATGACAAGGCACATGCTTGA 59.458 47.619 15.74 0.00 41.70 3.02
435 832 1.990799 CATGACAAGGCACATGCTTG 58.009 50.000 3.48 9.28 41.70 4.01
465 862 7.505923 TGCTATAGGAACTGCAGTAGAAATCTA 59.494 37.037 22.01 14.68 41.52 1.98
466 863 6.325028 TGCTATAGGAACTGCAGTAGAAATCT 59.675 38.462 22.01 13.08 41.52 2.40
467 864 6.516718 TGCTATAGGAACTGCAGTAGAAATC 58.483 40.000 22.01 13.43 41.52 2.17
468 865 6.485830 TGCTATAGGAACTGCAGTAGAAAT 57.514 37.500 22.01 13.94 41.52 2.17
469 866 5.932619 TGCTATAGGAACTGCAGTAGAAA 57.067 39.130 22.01 7.07 41.52 2.52
470 867 5.835819 AGATGCTATAGGAACTGCAGTAGAA 59.164 40.000 22.01 7.57 38.26 2.10
471 868 5.389520 AGATGCTATAGGAACTGCAGTAGA 58.610 41.667 22.01 6.07 38.26 2.59
472 869 5.720371 AGATGCTATAGGAACTGCAGTAG 57.280 43.478 22.01 13.73 38.26 2.57
473 870 5.363868 ACAAGATGCTATAGGAACTGCAGTA 59.636 40.000 22.01 4.30 38.26 2.74
474 871 4.163078 ACAAGATGCTATAGGAACTGCAGT 59.837 41.667 15.25 15.25 38.26 4.40
475 872 4.510711 CACAAGATGCTATAGGAACTGCAG 59.489 45.833 13.48 13.48 38.26 4.41
476 873 4.445453 CACAAGATGCTATAGGAACTGCA 58.555 43.478 4.79 0.00 41.52 4.41
478 875 3.812053 GCCACAAGATGCTATAGGAACTG 59.188 47.826 4.79 2.54 41.52 3.16
479 876 3.455910 TGCCACAAGATGCTATAGGAACT 59.544 43.478 0.00 0.00 46.37 3.01
481 878 4.141413 ACATGCCACAAGATGCTATAGGAA 60.141 41.667 0.00 0.00 0.00 3.36
482 879 3.392285 ACATGCCACAAGATGCTATAGGA 59.608 43.478 1.04 0.00 0.00 2.94
486 883 6.720112 AAAATACATGCCACAAGATGCTAT 57.280 33.333 0.00 0.00 0.00 2.97
488 885 5.172934 CAAAAATACATGCCACAAGATGCT 58.827 37.500 0.00 0.00 0.00 3.79
491 888 5.047164 TCAGCAAAAATACATGCCACAAGAT 60.047 36.000 0.00 0.00 43.57 2.40
492 889 4.280425 TCAGCAAAAATACATGCCACAAGA 59.720 37.500 0.00 0.00 43.57 3.02
493 890 4.558178 TCAGCAAAAATACATGCCACAAG 58.442 39.130 0.00 0.00 43.57 3.16
494 891 4.597404 TCAGCAAAAATACATGCCACAA 57.403 36.364 0.00 0.00 43.57 3.33
496 893 4.559153 ACTTCAGCAAAAATACATGCCAC 58.441 39.130 0.00 0.00 43.57 5.01
497 894 4.523943 AGACTTCAGCAAAAATACATGCCA 59.476 37.500 0.00 0.00 43.57 4.92
499 896 7.430502 GTCATAGACTTCAGCAAAAATACATGC 59.569 37.037 0.00 0.00 42.87 4.06
500 897 7.637519 CGTCATAGACTTCAGCAAAAATACATG 59.362 37.037 0.00 0.00 0.00 3.21
501 898 7.334421 ACGTCATAGACTTCAGCAAAAATACAT 59.666 33.333 0.00 0.00 0.00 2.29
503 900 6.955963 CACGTCATAGACTTCAGCAAAAATAC 59.044 38.462 0.00 0.00 0.00 1.89
504 901 6.092122 CCACGTCATAGACTTCAGCAAAAATA 59.908 38.462 0.00 0.00 0.00 1.40
505 902 5.106555 CCACGTCATAGACTTCAGCAAAAAT 60.107 40.000 0.00 0.00 0.00 1.82
506 903 4.213270 CCACGTCATAGACTTCAGCAAAAA 59.787 41.667 0.00 0.00 0.00 1.94
507 904 3.745975 CCACGTCATAGACTTCAGCAAAA 59.254 43.478 0.00 0.00 0.00 2.44
509 906 2.299013 ACCACGTCATAGACTTCAGCAA 59.701 45.455 0.00 0.00 0.00 3.91
510 907 1.893137 ACCACGTCATAGACTTCAGCA 59.107 47.619 0.00 0.00 0.00 4.41
511 908 2.164624 AGACCACGTCATAGACTTCAGC 59.835 50.000 0.00 0.00 34.60 4.26
512 909 4.442375 AAGACCACGTCATAGACTTCAG 57.558 45.455 0.00 0.00 34.60 3.02
514 911 3.368236 GCAAAGACCACGTCATAGACTTC 59.632 47.826 0.00 0.00 34.60 3.01
515 912 3.244078 TGCAAAGACCACGTCATAGACTT 60.244 43.478 0.00 0.00 34.60 3.01
516 913 2.299013 TGCAAAGACCACGTCATAGACT 59.701 45.455 0.00 0.00 34.60 3.24
517 914 2.683968 TGCAAAGACCACGTCATAGAC 58.316 47.619 0.00 0.00 34.60 2.59
519 916 3.242091 CGAATGCAAAGACCACGTCATAG 60.242 47.826 0.00 0.00 34.60 2.23
522 919 0.865111 CGAATGCAAAGACCACGTCA 59.135 50.000 0.00 0.00 34.60 4.35
523 920 0.452784 GCGAATGCAAAGACCACGTC 60.453 55.000 0.00 0.00 42.15 4.34
526 923 0.169009 GGAGCGAATGCAAAGACCAC 59.831 55.000 0.00 0.00 46.23 4.16
528 925 1.098050 ATGGAGCGAATGCAAAGACC 58.902 50.000 0.00 0.00 46.23 3.85
529 926 2.927553 AATGGAGCGAATGCAAAGAC 57.072 45.000 0.00 0.00 46.23 3.01
530 927 3.255395 TGAAAATGGAGCGAATGCAAAGA 59.745 39.130 0.00 0.00 46.23 2.52
532 929 3.316283 GTGAAAATGGAGCGAATGCAAA 58.684 40.909 0.00 0.00 46.23 3.68
533 930 2.668001 CGTGAAAATGGAGCGAATGCAA 60.668 45.455 0.00 0.00 46.23 4.08
535 932 1.130373 TCGTGAAAATGGAGCGAATGC 59.870 47.619 0.00 0.00 43.24 3.56
536 933 2.159430 TGTCGTGAAAATGGAGCGAATG 59.841 45.455 0.00 0.00 33.30 2.67
539 936 1.872388 TTGTCGTGAAAATGGAGCGA 58.128 45.000 0.00 0.00 0.00 4.93
540 937 2.900122 ATTGTCGTGAAAATGGAGCG 57.100 45.000 0.00 0.00 0.00 5.03
541 938 4.798574 AGAAATTGTCGTGAAAATGGAGC 58.201 39.130 0.00 0.00 0.00 4.70
542 939 6.437928 TGAAGAAATTGTCGTGAAAATGGAG 58.562 36.000 0.00 0.00 0.00 3.86
543 940 6.384258 TGAAGAAATTGTCGTGAAAATGGA 57.616 33.333 0.00 0.00 0.00 3.41
544 941 7.381948 TCATTGAAGAAATTGTCGTGAAAATGG 59.618 33.333 0.00 0.00 0.00 3.16
545 942 8.284557 TCATTGAAGAAATTGTCGTGAAAATG 57.715 30.769 0.00 0.00 0.00 2.32
546 943 8.918658 CATCATTGAAGAAATTGTCGTGAAAAT 58.081 29.630 0.00 0.00 0.00 1.82
548 945 7.647228 TCATCATTGAAGAAATTGTCGTGAAA 58.353 30.769 0.00 0.00 0.00 2.69
549 946 7.200778 TCATCATTGAAGAAATTGTCGTGAA 57.799 32.000 0.00 0.00 0.00 3.18
550 947 6.128200 CCTCATCATTGAAGAAATTGTCGTGA 60.128 38.462 0.00 0.00 0.00 4.35
551 948 6.025896 CCTCATCATTGAAGAAATTGTCGTG 58.974 40.000 0.00 0.00 0.00 4.35
552 949 5.124457 CCCTCATCATTGAAGAAATTGTCGT 59.876 40.000 0.00 0.00 0.00 4.34
553 950 5.124457 ACCCTCATCATTGAAGAAATTGTCG 59.876 40.000 0.00 0.00 0.00 4.35
554 951 6.151648 TCACCCTCATCATTGAAGAAATTGTC 59.848 38.462 0.00 0.00 0.00 3.18
556 953 6.071784 TGTCACCCTCATCATTGAAGAAATTG 60.072 38.462 0.00 0.00 0.00 2.32
557 954 6.012113 TGTCACCCTCATCATTGAAGAAATT 58.988 36.000 0.00 0.00 0.00 1.82
558 955 5.573219 TGTCACCCTCATCATTGAAGAAAT 58.427 37.500 0.00 0.00 0.00 2.17
560 957 4.639078 TGTCACCCTCATCATTGAAGAA 57.361 40.909 0.00 0.00 0.00 2.52
561 958 4.639078 TTGTCACCCTCATCATTGAAGA 57.361 40.909 0.00 0.00 0.00 2.87
563 960 4.984295 TCTTTGTCACCCTCATCATTGAA 58.016 39.130 0.00 0.00 0.00 2.69
564 961 4.639078 TCTTTGTCACCCTCATCATTGA 57.361 40.909 0.00 0.00 0.00 2.57
565 962 5.474532 TCTTTCTTTGTCACCCTCATCATTG 59.525 40.000 0.00 0.00 0.00 2.82
568 965 4.705110 TCTTTCTTTGTCACCCTCATCA 57.295 40.909 0.00 0.00 0.00 3.07
569 966 4.397417 CCATCTTTCTTTGTCACCCTCATC 59.603 45.833 0.00 0.00 0.00 2.92
571 968 3.394274 TCCATCTTTCTTTGTCACCCTCA 59.606 43.478 0.00 0.00 0.00 3.86
573 970 3.652869 TCTCCATCTTTCTTTGTCACCCT 59.347 43.478 0.00 0.00 0.00 4.34
574 971 4.021102 TCTCCATCTTTCTTTGTCACCC 57.979 45.455 0.00 0.00 0.00 4.61
576 973 8.553459 TTTCTATCTCCATCTTTCTTTGTCAC 57.447 34.615 0.00 0.00 0.00 3.67
579 976 8.601546 AGTCTTTCTATCTCCATCTTTCTTTGT 58.398 33.333 0.00 0.00 0.00 2.83
580 977 9.447157 AAGTCTTTCTATCTCCATCTTTCTTTG 57.553 33.333 0.00 0.00 0.00 2.77
592 989 7.713073 CCATTGTCCCTAAAGTCTTTCTATCTC 59.287 40.741 0.00 0.00 0.00 2.75
595 992 7.112779 CACCATTGTCCCTAAAGTCTTTCTAT 58.887 38.462 0.00 0.00 0.00 1.98
597 994 5.163088 ACACCATTGTCCCTAAAGTCTTTCT 60.163 40.000 0.00 0.00 0.00 2.52
653 1050 7.915293 ATCTGACAAACACCGATACAAATAA 57.085 32.000 0.00 0.00 0.00 1.40
655 1052 6.817765 AATCTGACAAACACCGATACAAAT 57.182 33.333 0.00 0.00 0.00 2.32
656 1053 6.038825 ACAAATCTGACAAACACCGATACAAA 59.961 34.615 0.00 0.00 0.00 2.83
657 1054 5.529430 ACAAATCTGACAAACACCGATACAA 59.471 36.000 0.00 0.00 0.00 2.41
659 1056 5.607119 ACAAATCTGACAAACACCGATAC 57.393 39.130 0.00 0.00 0.00 2.24
661 1058 4.578516 TCAACAAATCTGACAAACACCGAT 59.421 37.500 0.00 0.00 0.00 4.18
663 1060 4.285807 TCAACAAATCTGACAAACACCG 57.714 40.909 0.00 0.00 0.00 4.94
678 1083 1.739338 AACGGCGGGCATTTCAACAA 61.739 50.000 13.24 0.00 0.00 2.83
687 1092 6.821031 AAAAATATATATAAACGGCGGGCA 57.179 33.333 13.24 0.00 0.00 5.36
705 1110 7.536281 GCGTACGTCCTCATTCTTTTTAAAAAT 59.464 33.333 17.90 0.00 0.00 1.82
707 1112 6.365050 GCGTACGTCCTCATTCTTTTTAAAA 58.635 36.000 17.90 0.00 0.00 1.52
708 1113 5.388682 CGCGTACGTCCTCATTCTTTTTAAA 60.389 40.000 17.90 0.00 33.53 1.52
711 1116 2.410730 CGCGTACGTCCTCATTCTTTTT 59.589 45.455 17.90 0.00 33.53 1.94
712 1117 1.990563 CGCGTACGTCCTCATTCTTTT 59.009 47.619 17.90 0.00 33.53 2.27
714 1119 0.179145 CCGCGTACGTCCTCATTCTT 60.179 55.000 17.90 0.00 37.70 2.52
715 1120 1.310933 ACCGCGTACGTCCTCATTCT 61.311 55.000 17.90 0.00 37.70 2.40
732 1425 0.240945 TCGAGGAAAACGGACGTACC 59.759 55.000 0.00 2.91 0.00 3.34
733 1426 1.331241 GTCGAGGAAAACGGACGTAC 58.669 55.000 0.00 0.00 0.00 3.67
736 1429 0.595567 TGTGTCGAGGAAAACGGACG 60.596 55.000 0.00 0.00 32.34 4.79
741 1434 1.003866 GTGCACTGTGTCGAGGAAAAC 60.004 52.381 10.32 0.00 0.00 2.43
779 1472 1.202580 GGTGATAGTGGCTACTGGCTG 60.203 57.143 13.76 0.00 41.46 4.85
859 1566 4.394712 CAGACAGGTGGCGGGTCC 62.395 72.222 0.00 0.00 31.99 4.46
888 1596 2.936032 AGGGCCAGGTGGGTCTTC 60.936 66.667 6.18 0.00 42.62 2.87
976 1685 2.416432 CGGGGTTCGGGTCTCTCTC 61.416 68.421 0.00 0.00 34.75 3.20
1199 1920 6.548622 GTGGACTACAAGGTACTGGTATATCA 59.451 42.308 0.00 0.00 43.49 2.15
1202 1923 5.889853 CAGTGGACTACAAGGTACTGGTATA 59.110 44.000 0.00 0.00 43.49 1.47
1207 1928 4.175787 GTCAGTGGACTACAAGGTACTG 57.824 50.000 0.00 0.00 39.12 2.74
1222 1943 2.896243 GCAAGAAGATGCAGTCAGTG 57.104 50.000 0.00 0.00 45.70 3.66
1268 1989 1.628846 AGTAGTTGGCATTTCCTCCGT 59.371 47.619 0.00 0.00 35.26 4.69
1361 2085 9.563898 CGAATCATAAACAGTACAGTACAAGTA 57.436 33.333 13.37 0.00 0.00 2.24
1371 2095 5.107837 CCTCATCGCGAATCATAAACAGTAC 60.108 44.000 15.24 0.00 0.00 2.73
1372 2096 4.982295 CCTCATCGCGAATCATAAACAGTA 59.018 41.667 15.24 0.00 0.00 2.74
1373 2097 3.804325 CCTCATCGCGAATCATAAACAGT 59.196 43.478 15.24 0.00 0.00 3.55
1374 2098 3.185188 CCCTCATCGCGAATCATAAACAG 59.815 47.826 15.24 0.00 0.00 3.16
1375 2099 3.130633 CCCTCATCGCGAATCATAAACA 58.869 45.455 15.24 0.00 0.00 2.83
1388 2112 2.094803 CAGCTCTGTATAGCCCTCATCG 60.095 54.545 0.00 0.00 43.86 3.84
1393 2117 2.765689 ACTCAGCTCTGTATAGCCCT 57.234 50.000 0.00 0.00 43.86 5.19
1404 2128 8.865001 CACTTCTGTTTTAAGTATACTCAGCTC 58.135 37.037 5.70 0.00 35.44 4.09
1405 2129 8.368668 ACACTTCTGTTTTAAGTATACTCAGCT 58.631 33.333 5.70 0.00 35.44 4.24
1406 2130 8.535690 ACACTTCTGTTTTAAGTATACTCAGC 57.464 34.615 5.70 0.00 35.44 4.26
1423 2152 4.761235 AGTGATCATGCAAACACTTCTG 57.239 40.909 0.00 0.00 40.03 3.02
1512 2269 5.491635 AGCAGAAGAAAACTTTGACAGAC 57.508 39.130 0.00 0.00 0.00 3.51
1530 2287 0.376152 CGCACAGCAGGATTTAGCAG 59.624 55.000 0.00 0.00 0.00 4.24
1541 2298 1.535015 GCAAGTTTTAACCGCACAGCA 60.535 47.619 0.00 0.00 0.00 4.41
1544 2301 2.941453 TTGCAAGTTTTAACCGCACA 57.059 40.000 0.00 0.00 37.50 4.57
1566 2323 5.998363 GGGTTATAAAATGTTTGGCCACAAA 59.002 36.000 3.88 0.00 43.91 2.83
1579 2336 6.183360 GCGCAGTAAACTGAGGGTTATAAAAT 60.183 38.462 14.21 0.00 46.59 1.82
1607 2364 6.681729 TTTCATATGGGAGGGTACAGATAC 57.318 41.667 2.13 0.00 0.00 2.24
1643 2401 2.008268 ATGCCGCAAGCCAGCAATAC 62.008 55.000 8.25 0.00 42.71 1.89
1647 2405 3.133464 GTATGCCGCAAGCCAGCA 61.133 61.111 0.00 6.84 42.71 4.41
1671 2430 5.232838 CACAAAACAATGCCTTCAGAAGAAC 59.767 40.000 12.14 4.11 0.00 3.01
1802 2567 7.124901 CCAGTTGGAGCAGGTAGTGATATATAT 59.875 40.741 0.00 0.00 37.39 0.86
1871 2636 7.871853 TGGAAGTAGCATAAAAACAAGAACTC 58.128 34.615 0.00 0.00 0.00 3.01
1895 2660 9.597170 TCAGAAAATAGATCTTCATCAACTCTG 57.403 33.333 0.00 3.67 0.00 3.35
1926 2691 0.398318 ACCTTCCAGTTGTGGCTCTC 59.602 55.000 0.00 0.00 44.60 3.20
1934 2699 4.396166 CCTACAGCAATAACCTTCCAGTTG 59.604 45.833 0.00 0.00 0.00 3.16
1974 2739 7.341256 AGCATGAGATGGACAATTAACATTTCT 59.659 33.333 0.00 0.00 29.90 2.52
2267 3035 8.941977 ACATAATTTCGAAATTAGTGCACTACA 58.058 29.630 34.24 18.74 42.29 2.74
2268 3036 9.210426 CACATAATTTCGAAATTAGTGCACTAC 57.790 33.333 34.24 13.47 42.29 2.73
2269 3037 8.941977 ACACATAATTTCGAAATTAGTGCACTA 58.058 29.630 35.96 22.67 42.29 2.74
2280 3048 8.572185 TGGATGAAAGAACACATAATTTCGAAA 58.428 29.630 13.91 13.91 35.01 3.46
2294 3062 7.554476 AGCTAACTATTTCCTGGATGAAAGAAC 59.446 37.037 0.00 0.00 37.63 3.01
2315 3084 6.039717 GCCAACCATCAAAATAGATGAGCTAA 59.960 38.462 5.57 0.00 46.51 3.09
2541 3318 6.867519 TGTGGAGGATTATGTCAACTTCTA 57.132 37.500 0.00 0.00 0.00 2.10
2586 3363 4.100344 TGATGGAGCAATTTGGATCAATGG 59.900 41.667 0.00 0.00 0.00 3.16
2718 3495 4.878397 AGCAAGTTATCAGATGGTTGCTAC 59.122 41.667 19.68 0.00 46.60 3.58
2814 3591 5.710099 CCATAAACCTGCTTAACAAAGAGGA 59.290 40.000 0.00 0.00 0.00 3.71
2846 3623 5.054477 GGATCAATGATGCAAAAATCAGGG 58.946 41.667 9.92 0.00 39.84 4.45
2894 3671 3.333029 TCTTGGATTTGCAGACGATCA 57.667 42.857 0.00 0.00 0.00 2.92
3130 3907 4.002906 AGACAAAGCCGATTGTAGACAA 57.997 40.909 0.00 0.00 43.31 3.18
3132 3909 3.994392 TCAAGACAAAGCCGATTGTAGAC 59.006 43.478 0.65 0.00 43.31 2.59
3195 3972 6.626623 GCTTCTGTAATTCACTGCCATTGAAT 60.627 38.462 4.59 4.59 44.00 2.57
3200 3977 3.689347 TGCTTCTGTAATTCACTGCCAT 58.311 40.909 0.00 0.00 0.00 4.40
3403 4180 5.304778 TCAAGTAGCACAATAAGTCAGCAA 58.695 37.500 0.00 0.00 0.00 3.91
3421 4198 4.803452 TCCAAACTGAAAAGGGATCAAGT 58.197 39.130 0.00 0.00 0.00 3.16
3487 4264 1.442769 ACTAATGCCTGCAGACAACG 58.557 50.000 17.39 5.16 0.00 4.10
3671 4448 6.696411 AGTGTCAAAATTGAAGGAAAACACA 58.304 32.000 11.90 0.00 39.21 3.72
3697 4474 1.003580 ACTCAACACGGAATGCCTCAT 59.996 47.619 0.00 0.00 0.00 2.90
3709 4486 3.186001 CAGAGTGCATCAAGACTCAACAC 59.814 47.826 0.00 0.00 41.01 3.32
3754 4531 4.033243 TCTGAAGATGAATCATCGCAAACG 59.967 41.667 16.57 8.44 44.67 3.60
3985 4776 1.671979 AGACATCCAACATCATGCCG 58.328 50.000 0.00 0.00 0.00 5.69
3992 4783 8.033038 CAGATGAATGAAAAAGACATCCAACAT 58.967 33.333 0.00 0.00 38.32 2.71
4114 4906 9.034544 CGATGTTCAGAGATTTGTTATCATGTA 57.965 33.333 0.00 0.00 0.00 2.29
4118 4910 6.313658 CACCGATGTTCAGAGATTTGTTATCA 59.686 38.462 0.00 0.00 0.00 2.15
4222 5014 8.807948 ACTAATAGCACAAACCATACAAGAAT 57.192 30.769 0.00 0.00 0.00 2.40
4227 5019 6.976349 CGACTACTAATAGCACAAACCATACA 59.024 38.462 0.00 0.00 30.75 2.29
4252 5045 5.780984 AGTTACTCTGTTTGTAGCTGTACC 58.219 41.667 0.00 0.00 31.85 3.34
4278 5071 2.158813 TGTTTCAGACTTCCAGTGGGAC 60.159 50.000 9.92 0.00 44.89 4.46
4303 5096 7.346751 ACAACAAAAAGATAATGGTGACTGT 57.653 32.000 0.00 0.00 35.36 3.55
4304 5097 7.306749 GCAACAACAAAAAGATAATGGTGACTG 60.307 37.037 0.00 0.00 35.36 3.51
4323 5116 2.495939 CGAAGTAGAATGCGCAACAAC 58.504 47.619 17.11 10.88 0.00 3.32
4324 5117 1.463056 CCGAAGTAGAATGCGCAACAA 59.537 47.619 17.11 0.00 0.00 2.83
4330 5123 2.607187 ACAGTTCCGAAGTAGAATGCG 58.393 47.619 0.00 0.00 0.00 4.73
4347 5140 6.183360 TGCGTATTCAAAGGCTATGTTTACAG 60.183 38.462 0.00 0.00 0.00 2.74
4354 5148 3.206150 ACCTGCGTATTCAAAGGCTATG 58.794 45.455 0.00 0.00 32.73 2.23
4385 5179 3.431346 CCACTATGACATGGTCTCCACTG 60.431 52.174 0.74 0.00 35.80 3.66
4388 5182 2.766263 GTCCACTATGACATGGTCTCCA 59.234 50.000 0.74 0.00 37.27 3.86
4397 5191 7.069578 GGAAGATAGTTTAGGTCCACTATGACA 59.930 40.741 5.33 0.00 36.52 3.58
4427 5221 4.040461 TCGGAGTCAGGAACTTCTTTGAAT 59.960 41.667 0.00 0.00 38.74 2.57
4512 5306 2.565391 TCGAGGCCAATGACTAAGTTCA 59.435 45.455 5.01 0.00 0.00 3.18
4513 5307 3.119101 TCTCGAGGCCAATGACTAAGTTC 60.119 47.826 13.56 0.00 0.00 3.01
4540 5334 5.110598 TGTTGTCGCCGTTATTGTATATGT 58.889 37.500 0.00 0.00 0.00 2.29
4629 5423 3.538591 TCTACGATTCTAGGCGACAAGA 58.461 45.455 0.00 5.01 0.00 3.02
4659 5453 2.095364 CACATCTCTGCCTGCAAAGTTC 60.095 50.000 0.00 0.00 0.00 3.01
4700 5503 2.163818 TTAACTCCACAGTTGAGCGG 57.836 50.000 1.42 0.00 43.17 5.52
4784 5626 5.434408 AGCATATCATGTCACTCACATTGT 58.566 37.500 0.00 0.00 43.89 2.71
4833 5675 1.570803 AGATGCAGAGAGAAGCAGGT 58.429 50.000 0.00 0.00 44.94 4.00
4848 5690 8.763049 TTCACATACAAAGAACAGAGTAGATG 57.237 34.615 0.00 0.00 0.00 2.90
4869 5711 7.934457 ACAGGCTTTCACATGATATAATTCAC 58.066 34.615 0.00 0.00 0.00 3.18
5190 6035 2.084546 ACGGAAGCTTGCCTGAATAAC 58.915 47.619 12.80 0.00 0.00 1.89
5200 6045 1.394917 GCATACAGTGACGGAAGCTTG 59.605 52.381 2.10 0.00 0.00 4.01
5273 6119 1.677217 GCAGGGAGCAGAGTAAACAGG 60.677 57.143 0.00 0.00 44.79 4.00
5294 6140 1.065199 TCCATTCTTCAGGCGCTCAAT 60.065 47.619 7.64 0.00 0.00 2.57
5301 6147 1.404391 CATGTGCTCCATTCTTCAGGC 59.596 52.381 0.00 0.00 0.00 4.85
5315 6161 1.363744 CGGAGAACCTCTTCATGTGC 58.636 55.000 0.00 0.00 0.00 4.57
5394 6240 4.319177 CTGTACAGTTCCCCAAAGAGAAG 58.681 47.826 15.06 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.