Multiple sequence alignment - TraesCS5A01G304900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G304900 chr5A 100.000 4203 0 0 1 4203 513871824 513867622 0.000000e+00 7762.0
1 TraesCS5A01G304900 chr5A 94.544 1448 73 4 2761 4203 402982130 402980684 0.000000e+00 2231.0
2 TraesCS5A01G304900 chr5A 94.223 1454 75 4 2758 4203 602504951 602503499 0.000000e+00 2211.0
3 TraesCS5A01G304900 chr5A 85.298 687 96 5 1970 2655 514003951 514004633 0.000000e+00 704.0
4 TraesCS5A01G304900 chr5A 76.806 720 130 25 1966 2659 513960226 513959518 1.850000e-98 370.0
5 TraesCS5A01G304900 chr5A 91.667 48 4 0 739 786 38118153 38118200 2.710000e-07 67.6
6 TraesCS5A01G304900 chr5A 93.333 45 3 0 739 783 42699225 42699269 2.710000e-07 67.6
7 TraesCS5A01G304900 chr5A 93.182 44 3 0 743 786 29063584 29063541 9.750000e-07 65.8
8 TraesCS5A01G304900 chr5A 92.683 41 3 0 746 786 570471124 570471084 4.540000e-05 60.2
9 TraesCS5A01G304900 chr5D 95.028 1790 78 5 969 2747 407989388 407987599 0.000000e+00 2802.0
10 TraesCS5A01G304900 chr5D 85.229 677 93 7 1981 2655 408219793 408220464 0.000000e+00 689.0
11 TraesCS5A01G304900 chr5D 88.547 358 31 7 284 639 407989892 407989543 3.880000e-115 425.0
12 TraesCS5A01G304900 chr5D 77.058 741 127 33 1965 2676 408091111 408090385 1.830000e-103 387.0
13 TraesCS5A01G304900 chr5D 91.429 245 20 1 2513 2756 407976718 407976474 6.730000e-88 335.0
14 TraesCS5A01G304900 chr5D 91.176 102 9 0 795 896 354890673 354890572 5.670000e-29 139.0
15 TraesCS5A01G304900 chr5D 84.259 108 16 1 782 889 428238030 428238136 2.070000e-18 104.0
16 TraesCS5A01G304900 chr5B 94.994 1738 78 4 969 2697 489314180 489312443 0.000000e+00 2719.0
17 TraesCS5A01G304900 chr5B 85.486 689 93 7 1970 2656 489575137 489575820 0.000000e+00 712.0
18 TraesCS5A01G304900 chr5B 86.556 662 63 14 6 650 489314976 489314324 0.000000e+00 706.0
19 TraesCS5A01G304900 chr5B 84.716 687 100 5 1970 2655 489523532 489524214 0.000000e+00 682.0
20 TraesCS5A01G304900 chr5B 75.978 741 139 27 1966 2679 489386849 489386121 3.110000e-91 346.0
21 TraesCS5A01G304900 chr5B 78.182 440 68 25 1 429 489327611 489327189 5.390000e-64 255.0
22 TraesCS5A01G304900 chr5B 82.727 110 18 1 782 891 658586032 658585924 3.460000e-16 97.1
23 TraesCS5A01G304900 chr2A 97.026 1446 40 2 2761 4203 38519501 38520946 0.000000e+00 2429.0
24 TraesCS5A01G304900 chr7A 96.545 1447 49 1 2758 4203 55404042 55405488 0.000000e+00 2394.0
25 TraesCS5A01G304900 chr7A 95.140 1461 55 6 2757 4203 133606447 133607905 0.000000e+00 2290.0
26 TraesCS5A01G304900 chr7A 94.349 1451 72 7 2760 4203 164721854 164723301 0.000000e+00 2217.0
27 TraesCS5A01G304900 chr7A 86.916 107 14 0 782 888 183802054 183801948 2.050000e-23 121.0
28 TraesCS5A01G304900 chr7A 94.872 39 2 0 666 704 202847949 202847911 1.260000e-05 62.1
29 TraesCS5A01G304900 chr1A 95.245 1451 58 4 2760 4203 572006041 572007487 0.000000e+00 2287.0
30 TraesCS5A01G304900 chr1A 100.000 29 0 0 666 694 571879110 571879138 2.000000e-03 54.7
31 TraesCS5A01G304900 chr7B 94.628 1452 67 6 2761 4203 714524018 714525467 0.000000e+00 2239.0
32 TraesCS5A01G304900 chr7B 87.387 111 12 2 782 891 619607719 619607828 4.410000e-25 126.0
33 TraesCS5A01G304900 chr3A 94.349 1451 70 5 2761 4203 64309469 64310915 0.000000e+00 2215.0
34 TraesCS5A01G304900 chr3A 90.909 110 10 0 782 891 81691828 81691937 9.410000e-32 148.0
35 TraesCS5A01G304900 chr3A 97.368 38 1 0 746 783 600310065 600310028 9.750000e-07 65.8
36 TraesCS5A01G304900 chr3A 90.698 43 3 1 666 708 9814944 9814985 5.870000e-04 56.5
37 TraesCS5A01G304900 chr3A 96.875 32 1 0 666 697 102705 102674 2.000000e-03 54.7
38 TraesCS5A01G304900 chr4B 88.182 110 13 0 782 891 106643574 106643683 9.480000e-27 132.0
39 TraesCS5A01G304900 chr4B 84.404 109 17 0 784 892 620523780 620523888 1.600000e-19 108.0
40 TraesCS5A01G304900 chr4B 83.636 110 18 0 783 892 620366690 620366799 2.070000e-18 104.0
41 TraesCS5A01G304900 chr6A 86.957 115 13 2 782 895 593424122 593424235 1.230000e-25 128.0
42 TraesCS5A01G304900 chr6A 81.443 97 17 1 795 891 73687301 73687396 1.250000e-10 78.7
43 TraesCS5A01G304900 chr6A 92.308 39 3 0 666 704 610509347 610509309 5.870000e-04 56.5
44 TraesCS5A01G304900 chr6A 92.105 38 3 0 667 704 322705073 322705110 2.000000e-03 54.7
45 TraesCS5A01G304900 chr1B 87.273 110 12 2 783 891 11933452 11933344 1.590000e-24 124.0
46 TraesCS5A01G304900 chr1B 85.455 110 16 0 782 891 15339849 15339740 9.550000e-22 115.0
47 TraesCS5A01G304900 chr4A 92.000 75 6 0 816 890 325190984 325190910 5.750000e-19 106.0
48 TraesCS5A01G304900 chr3D 84.259 108 16 1 784 891 48963577 48963683 2.070000e-18 104.0
49 TraesCS5A01G304900 chr3D 80.198 101 16 3 796 892 571138543 571138643 5.830000e-09 73.1
50 TraesCS5A01G304900 chr3D 91.111 45 4 0 739 783 291757145 291757101 1.260000e-05 62.1
51 TraesCS5A01G304900 chr4D 80.000 110 20 1 782 891 210450913 210451020 3.480000e-11 80.5
52 TraesCS5A01G304900 chr4D 84.000 75 8 4 824 896 360124326 360124254 7.540000e-08 69.4
53 TraesCS5A01G304900 chr6B 93.617 47 3 0 665 711 533817249 533817203 2.100000e-08 71.3
54 TraesCS5A01G304900 chr2B 94.872 39 2 0 666 704 786128323 786128361 1.260000e-05 62.1
55 TraesCS5A01G304900 chr1D 86.207 58 6 2 837 893 442404307 442404251 1.260000e-05 62.1
56 TraesCS5A01G304900 chr7D 92.500 40 3 0 666 705 509068977 509069016 1.630000e-04 58.4
57 TraesCS5A01G304900 chr6D 100.000 28 0 0 666 693 51782846 51782819 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G304900 chr5A 513867622 513871824 4202 True 7762.0 7762 100.0000 1 4203 1 chr5A.!!$R3 4202
1 TraesCS5A01G304900 chr5A 402980684 402982130 1446 True 2231.0 2231 94.5440 2761 4203 1 chr5A.!!$R2 1442
2 TraesCS5A01G304900 chr5A 602503499 602504951 1452 True 2211.0 2211 94.2230 2758 4203 1 chr5A.!!$R6 1445
3 TraesCS5A01G304900 chr5A 514003951 514004633 682 False 704.0 704 85.2980 1970 2655 1 chr5A.!!$F3 685
4 TraesCS5A01G304900 chr5A 513959518 513960226 708 True 370.0 370 76.8060 1966 2659 1 chr5A.!!$R4 693
5 TraesCS5A01G304900 chr5D 407987599 407989892 2293 True 1613.5 2802 91.7875 284 2747 2 chr5D.!!$R4 2463
6 TraesCS5A01G304900 chr5D 408219793 408220464 671 False 689.0 689 85.2290 1981 2655 1 chr5D.!!$F1 674
7 TraesCS5A01G304900 chr5D 408090385 408091111 726 True 387.0 387 77.0580 1965 2676 1 chr5D.!!$R3 711
8 TraesCS5A01G304900 chr5B 489312443 489314976 2533 True 1712.5 2719 90.7750 6 2697 2 chr5B.!!$R4 2691
9 TraesCS5A01G304900 chr5B 489575137 489575820 683 False 712.0 712 85.4860 1970 2656 1 chr5B.!!$F2 686
10 TraesCS5A01G304900 chr5B 489523532 489524214 682 False 682.0 682 84.7160 1970 2655 1 chr5B.!!$F1 685
11 TraesCS5A01G304900 chr5B 489386121 489386849 728 True 346.0 346 75.9780 1966 2679 1 chr5B.!!$R2 713
12 TraesCS5A01G304900 chr2A 38519501 38520946 1445 False 2429.0 2429 97.0260 2761 4203 1 chr2A.!!$F1 1442
13 TraesCS5A01G304900 chr7A 55404042 55405488 1446 False 2394.0 2394 96.5450 2758 4203 1 chr7A.!!$F1 1445
14 TraesCS5A01G304900 chr7A 133606447 133607905 1458 False 2290.0 2290 95.1400 2757 4203 1 chr7A.!!$F2 1446
15 TraesCS5A01G304900 chr7A 164721854 164723301 1447 False 2217.0 2217 94.3490 2760 4203 1 chr7A.!!$F3 1443
16 TraesCS5A01G304900 chr1A 572006041 572007487 1446 False 2287.0 2287 95.2450 2760 4203 1 chr1A.!!$F2 1443
17 TraesCS5A01G304900 chr7B 714524018 714525467 1449 False 2239.0 2239 94.6280 2761 4203 1 chr7B.!!$F2 1442
18 TraesCS5A01G304900 chr3A 64309469 64310915 1446 False 2215.0 2215 94.3490 2761 4203 1 chr3A.!!$F2 1442

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
752 769 0.103572 ACGGTACAAACGCACACTCT 59.896 50.0 0.00 0.00 34.00 3.24 F
921 938 0.107017 ACTTGTGACCTGCAAGCTGT 60.107 50.0 5.12 0.00 45.09 4.40 F
1352 1410 0.814457 CTACTTCGAGCAGCTGGAGT 59.186 55.0 17.12 5.32 0.00 3.85 F
1798 1856 0.880278 ATCATATGCCGCGTGTGTCC 60.880 55.0 4.92 0.00 0.00 4.02 F
3058 3155 0.336737 ATCCTCTCCCCTCTCGTTGT 59.663 55.0 0.00 0.00 0.00 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1729 1787 0.174617 GAGGCTCCAGGTCGAAGAAG 59.825 60.000 2.15 0.0 39.69 2.85 R
1913 1978 1.098050 AGTGCAAATGCTCGGAATCC 58.902 50.000 6.97 0.0 42.66 3.01 R
3058 3155 0.838608 GGGAGAGGACGGAGAGAGTA 59.161 60.000 0.00 0.0 0.00 2.59 R
3187 3293 2.051345 GCGTCCAAACTTGTGCCG 60.051 61.111 0.00 0.0 0.00 5.69 R
3896 4015 2.548875 CTCTCTTTGAATCCTGCTCCG 58.451 52.381 0.00 0.0 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 1.279846 CAAGTTTAACCCTAGCCCCGA 59.720 52.381 0.00 0.00 0.00 5.14
50 51 0.751452 CCCTAGCCCCGACTTACTTC 59.249 60.000 0.00 0.00 0.00 3.01
54 55 2.822707 AGCCCCGACTTACTTCTCTA 57.177 50.000 0.00 0.00 0.00 2.43
56 57 1.065251 GCCCCGACTTACTTCTCTACG 59.935 57.143 0.00 0.00 0.00 3.51
61 62 3.688673 CCGACTTACTTCTCTACGTCCTT 59.311 47.826 0.00 0.00 0.00 3.36
73 74 5.297776 TCTCTACGTCCTTAGGGTTTTATCG 59.702 44.000 0.00 0.00 0.00 2.92
78 79 1.478105 CCTTAGGGTTTTATCGCCCCC 60.478 57.143 0.00 0.00 45.95 5.40
101 102 3.735725 CCCCCACGATACCAACCT 58.264 61.111 0.00 0.00 0.00 3.50
102 103 1.223487 CCCCCACGATACCAACCTG 59.777 63.158 0.00 0.00 0.00 4.00
122 123 2.095110 TGTTGCTCAATGGCTTTCGATG 60.095 45.455 0.00 0.00 0.00 3.84
137 140 5.414789 TTTCGATGTTCTCACAATCCCTA 57.585 39.130 0.00 0.00 36.16 3.53
140 143 5.989477 TCGATGTTCTCACAATCCCTATTT 58.011 37.500 0.00 0.00 36.16 1.40
144 147 2.821546 TCTCACAATCCCTATTTCGCG 58.178 47.619 0.00 0.00 0.00 5.87
150 153 0.396435 ATCCCTATTTCGCGCCATCA 59.604 50.000 0.00 0.00 0.00 3.07
157 160 0.750249 TTTCGCGCCATCATCTCCTA 59.250 50.000 0.00 0.00 0.00 2.94
160 163 1.748403 GCGCCATCATCTCCTACCA 59.252 57.895 0.00 0.00 0.00 3.25
170 173 4.215908 TCATCTCCTACCACTACCACATC 58.784 47.826 0.00 0.00 0.00 3.06
173 176 3.528078 TCTCCTACCACTACCACATCTCT 59.472 47.826 0.00 0.00 0.00 3.10
184 187 1.747355 CCACATCTCTTTGCCCATCAC 59.253 52.381 0.00 0.00 0.00 3.06
208 211 0.468226 TTGTTGCCACCTCTTCTCGT 59.532 50.000 0.00 0.00 0.00 4.18
209 212 1.334160 TGTTGCCACCTCTTCTCGTA 58.666 50.000 0.00 0.00 0.00 3.43
211 214 2.103432 TGTTGCCACCTCTTCTCGTAAA 59.897 45.455 0.00 0.00 0.00 2.01
213 216 3.478857 TGCCACCTCTTCTCGTAAAAA 57.521 42.857 0.00 0.00 0.00 1.94
264 278 6.478344 AGCAATTTAGAGACGATAAGCAAGAG 59.522 38.462 0.00 0.00 0.00 2.85
314 328 0.178938 TGGAGCCCAAGCATTTTGGA 60.179 50.000 7.48 0.00 42.06 3.53
331 345 0.751643 GGAGCAATGGCAACGGGTAT 60.752 55.000 0.00 0.00 44.61 2.73
332 346 1.102978 GAGCAATGGCAACGGGTATT 58.897 50.000 0.00 0.00 44.61 1.89
336 350 1.821753 CAATGGCAACGGGTATTGGAA 59.178 47.619 0.00 0.00 42.51 3.53
338 352 0.963355 TGGCAACGGGTATTGGAAGC 60.963 55.000 0.00 0.00 42.51 3.86
377 393 1.864082 CCCACAAAATTGCGTTTGTCC 59.136 47.619 9.32 0.00 46.29 4.02
390 406 3.847105 GCGTTTGTCCGTTTTCTGGTTAG 60.847 47.826 0.00 0.00 0.00 2.34
392 408 4.318546 CGTTTGTCCGTTTTCTGGTTAGAG 60.319 45.833 0.00 0.00 33.70 2.43
404 420 3.154827 TGGTTAGAGCCAGGGAAAAAG 57.845 47.619 0.00 0.00 33.97 2.27
405 421 2.714250 TGGTTAGAGCCAGGGAAAAAGA 59.286 45.455 0.00 0.00 33.97 2.52
406 422 3.082548 GGTTAGAGCCAGGGAAAAAGAC 58.917 50.000 0.00 0.00 0.00 3.01
407 423 2.742589 GTTAGAGCCAGGGAAAAAGACG 59.257 50.000 0.00 0.00 0.00 4.18
409 425 1.420138 AGAGCCAGGGAAAAAGACGAA 59.580 47.619 0.00 0.00 0.00 3.85
410 426 1.807142 GAGCCAGGGAAAAAGACGAAG 59.193 52.381 0.00 0.00 0.00 3.79
411 427 0.881796 GCCAGGGAAAAAGACGAAGG 59.118 55.000 0.00 0.00 0.00 3.46
412 428 1.818131 GCCAGGGAAAAAGACGAAGGT 60.818 52.381 0.00 0.00 0.00 3.50
413 429 1.880027 CCAGGGAAAAAGACGAAGGTG 59.120 52.381 0.00 0.00 0.00 4.00
427 443 3.190874 CGAAGGTGGAGTCTAAATCAGC 58.809 50.000 0.00 0.00 0.00 4.26
432 448 5.006386 AGGTGGAGTCTAAATCAGCAAAAG 58.994 41.667 0.00 0.00 0.00 2.27
434 450 4.457257 GTGGAGTCTAAATCAGCAAAAGCT 59.543 41.667 0.00 0.00 0.00 3.74
435 451 4.697352 TGGAGTCTAAATCAGCAAAAGCTC 59.303 41.667 0.00 0.00 0.00 4.09
476 492 5.715070 ACAACCGTCTCTAAGAATGAAGAG 58.285 41.667 0.00 0.00 40.54 2.85
488 504 3.496130 AGAATGAAGAGACGTTGCAACTG 59.504 43.478 26.09 20.71 0.00 3.16
504 520 1.153745 CTGCACCTACACTCTCGGC 60.154 63.158 0.00 0.00 0.00 5.54
534 550 5.242434 ACAAGTTTTCTTTTGGAAACCCAC 58.758 37.500 0.00 0.00 42.80 4.61
536 552 4.101114 AGTTTTCTTTTGGAAACCCACCT 58.899 39.130 0.00 0.00 42.80 4.00
540 556 2.107366 CTTTTGGAAACCCACCTGTGT 58.893 47.619 0.00 0.00 32.44 3.72
553 569 2.198827 CCTGTGTAGGTTGATTGGCA 57.801 50.000 0.00 0.00 39.39 4.92
665 682 7.106239 AGCCATAAATAGTATGAATCGAAGGG 58.894 38.462 0.00 0.00 0.00 3.95
666 683 6.879458 GCCATAAATAGTATGAATCGAAGGGT 59.121 38.462 0.00 0.00 0.00 4.34
669 686 8.926710 CATAAATAGTATGAATCGAAGGGTGTC 58.073 37.037 0.00 0.00 0.00 3.67
671 688 4.819105 AGTATGAATCGAAGGGTGTCAA 57.181 40.909 0.00 0.00 0.00 3.18
672 689 5.160607 AGTATGAATCGAAGGGTGTCAAA 57.839 39.130 0.00 0.00 0.00 2.69
673 690 5.556915 AGTATGAATCGAAGGGTGTCAAAA 58.443 37.500 0.00 0.00 0.00 2.44
674 691 6.001460 AGTATGAATCGAAGGGTGTCAAAAA 58.999 36.000 0.00 0.00 0.00 1.94
675 692 4.561735 TGAATCGAAGGGTGTCAAAAAC 57.438 40.909 0.00 0.00 0.00 2.43
676 693 3.002862 TGAATCGAAGGGTGTCAAAAACG 59.997 43.478 0.00 0.00 0.00 3.60
677 694 0.658897 TCGAAGGGTGTCAAAAACGC 59.341 50.000 0.00 0.00 37.67 4.84
678 695 0.661020 CGAAGGGTGTCAAAAACGCT 59.339 50.000 0.00 0.00 42.07 5.07
679 696 1.333791 CGAAGGGTGTCAAAAACGCTC 60.334 52.381 0.00 0.00 39.65 5.03
680 697 3.800826 AGGGTGTCAAAAACGCTCT 57.199 47.368 0.00 0.00 44.59 4.09
685 702 5.813080 GGGTGTCAAAAACGCTCTTATAT 57.187 39.130 0.00 0.00 35.86 0.86
686 703 6.190954 GGGTGTCAAAAACGCTCTTATATT 57.809 37.500 0.00 0.00 35.86 1.28
687 704 7.311364 GGGTGTCAAAAACGCTCTTATATTA 57.689 36.000 0.00 0.00 35.86 0.98
688 705 7.927048 GGGTGTCAAAAACGCTCTTATATTAT 58.073 34.615 0.00 0.00 35.86 1.28
689 706 9.048446 GGGTGTCAAAAACGCTCTTATATTATA 57.952 33.333 0.00 0.00 35.86 0.98
695 712 9.793245 CAAAAACGCTCTTATATTATAAGACGG 57.207 33.333 28.12 21.37 35.02 4.79
696 713 9.754382 AAAAACGCTCTTATATTATAAGACGGA 57.246 29.630 28.12 13.26 35.02 4.69
697 714 9.924650 AAAACGCTCTTATATTATAAGACGGAT 57.075 29.630 28.12 21.29 35.02 4.18
698 715 9.924650 AAACGCTCTTATATTATAAGACGGATT 57.075 29.630 28.12 23.48 35.02 3.01
699 716 8.912787 ACGCTCTTATATTATAAGACGGATTG 57.087 34.615 28.12 18.39 35.02 2.67
700 717 8.737175 ACGCTCTTATATTATAAGACGGATTGA 58.263 33.333 28.12 11.69 35.02 2.57
701 718 9.227490 CGCTCTTATATTATAAGACGGATTGAG 57.773 37.037 23.33 14.40 31.27 3.02
717 734 6.093633 ACGGATTGAGTACTTTCTAATTTGGC 59.906 38.462 0.00 0.00 0.00 4.52
718 735 6.487103 GGATTGAGTACTTTCTAATTTGGCG 58.513 40.000 0.00 0.00 0.00 5.69
719 736 6.093633 GGATTGAGTACTTTCTAATTTGGCGT 59.906 38.462 0.00 0.00 0.00 5.68
720 737 7.279313 GGATTGAGTACTTTCTAATTTGGCGTA 59.721 37.037 0.00 0.00 0.00 4.42
721 738 6.956299 TGAGTACTTTCTAATTTGGCGTAC 57.044 37.500 0.00 0.00 0.00 3.67
722 739 6.457355 TGAGTACTTTCTAATTTGGCGTACA 58.543 36.000 0.00 0.00 0.00 2.90
723 740 7.101054 TGAGTACTTTCTAATTTGGCGTACAT 58.899 34.615 0.00 0.00 0.00 2.29
724 741 7.604927 TGAGTACTTTCTAATTTGGCGTACATT 59.395 33.333 0.00 0.00 0.00 2.71
725 742 8.331730 AGTACTTTCTAATTTGGCGTACATTT 57.668 30.769 0.00 0.00 0.00 2.32
726 743 8.789762 AGTACTTTCTAATTTGGCGTACATTTT 58.210 29.630 0.00 0.00 0.00 1.82
727 744 9.401873 GTACTTTCTAATTTGGCGTACATTTTT 57.598 29.630 0.00 0.00 0.00 1.94
746 763 4.346734 TTTTTAACACGGTACAAACGCA 57.653 36.364 0.00 0.00 34.00 5.24
747 764 3.316253 TTTAACACGGTACAAACGCAC 57.684 42.857 0.00 0.00 34.00 5.34
748 765 1.931906 TAACACGGTACAAACGCACA 58.068 45.000 0.00 0.00 34.00 4.57
749 766 0.374410 AACACGGTACAAACGCACAC 59.626 50.000 0.00 0.00 34.00 3.82
750 767 0.460635 ACACGGTACAAACGCACACT 60.461 50.000 0.00 0.00 34.00 3.55
751 768 0.231279 CACGGTACAAACGCACACTC 59.769 55.000 0.00 0.00 34.00 3.51
752 769 0.103572 ACGGTACAAACGCACACTCT 59.896 50.000 0.00 0.00 34.00 3.24
753 770 1.337703 ACGGTACAAACGCACACTCTA 59.662 47.619 0.00 0.00 34.00 2.43
754 771 2.029649 ACGGTACAAACGCACACTCTAT 60.030 45.455 0.00 0.00 34.00 1.98
755 772 2.597305 CGGTACAAACGCACACTCTATC 59.403 50.000 0.00 0.00 0.00 2.08
756 773 2.928116 GGTACAAACGCACACTCTATCC 59.072 50.000 0.00 0.00 0.00 2.59
757 774 2.094762 ACAAACGCACACTCTATCCC 57.905 50.000 0.00 0.00 0.00 3.85
758 775 1.623811 ACAAACGCACACTCTATCCCT 59.376 47.619 0.00 0.00 0.00 4.20
759 776 2.829720 ACAAACGCACACTCTATCCCTA 59.170 45.455 0.00 0.00 0.00 3.53
760 777 3.451178 ACAAACGCACACTCTATCCCTAT 59.549 43.478 0.00 0.00 0.00 2.57
761 778 3.735237 AACGCACACTCTATCCCTATG 57.265 47.619 0.00 0.00 0.00 2.23
762 779 2.945456 ACGCACACTCTATCCCTATGA 58.055 47.619 0.00 0.00 0.00 2.15
763 780 2.887783 ACGCACACTCTATCCCTATGAG 59.112 50.000 0.00 0.00 0.00 2.90
764 781 2.352225 CGCACACTCTATCCCTATGAGC 60.352 54.545 0.00 0.00 0.00 4.26
765 782 2.630098 GCACACTCTATCCCTATGAGCA 59.370 50.000 0.00 0.00 0.00 4.26
766 783 3.260380 GCACACTCTATCCCTATGAGCAT 59.740 47.826 0.00 0.00 0.00 3.79
767 784 4.620332 GCACACTCTATCCCTATGAGCATC 60.620 50.000 0.00 0.00 0.00 3.91
768 785 4.771577 CACACTCTATCCCTATGAGCATCT 59.228 45.833 0.00 0.00 34.92 2.90
769 786 5.245751 CACACTCTATCCCTATGAGCATCTT 59.754 44.000 0.00 0.00 34.92 2.40
770 787 5.480073 ACACTCTATCCCTATGAGCATCTTC 59.520 44.000 0.00 0.00 34.92 2.87
771 788 4.704540 ACTCTATCCCTATGAGCATCTTCG 59.295 45.833 0.00 0.00 34.92 3.79
772 789 4.923415 TCTATCCCTATGAGCATCTTCGA 58.077 43.478 0.00 0.00 34.92 3.71
773 790 5.325239 TCTATCCCTATGAGCATCTTCGAA 58.675 41.667 0.00 0.00 34.92 3.71
774 791 4.963318 ATCCCTATGAGCATCTTCGAAA 57.037 40.909 0.00 0.00 34.92 3.46
775 792 4.963318 TCCCTATGAGCATCTTCGAAAT 57.037 40.909 0.00 0.00 34.92 2.17
776 793 6.611613 ATCCCTATGAGCATCTTCGAAATA 57.388 37.500 0.00 0.00 34.92 1.40
777 794 5.784177 TCCCTATGAGCATCTTCGAAATAC 58.216 41.667 0.00 0.00 34.92 1.89
778 795 5.540337 TCCCTATGAGCATCTTCGAAATACT 59.460 40.000 0.00 0.00 34.92 2.12
779 796 5.636965 CCCTATGAGCATCTTCGAAATACTG 59.363 44.000 0.00 0.00 34.92 2.74
780 797 6.450545 CCTATGAGCATCTTCGAAATACTGA 58.549 40.000 0.00 0.00 34.92 3.41
781 798 6.585702 CCTATGAGCATCTTCGAAATACTGAG 59.414 42.308 0.00 0.00 34.92 3.35
782 799 4.115516 TGAGCATCTTCGAAATACTGAGC 58.884 43.478 0.00 0.00 34.92 4.26
783 800 3.462021 AGCATCTTCGAAATACTGAGCC 58.538 45.455 0.00 0.00 0.00 4.70
784 801 2.219674 GCATCTTCGAAATACTGAGCCG 59.780 50.000 0.00 0.00 0.00 5.52
785 802 2.579207 TCTTCGAAATACTGAGCCGG 57.421 50.000 0.00 0.00 0.00 6.13
786 803 2.097036 TCTTCGAAATACTGAGCCGGA 58.903 47.619 5.05 0.00 0.00 5.14
787 804 2.494471 TCTTCGAAATACTGAGCCGGAA 59.506 45.455 5.05 0.00 0.00 4.30
788 805 3.056393 TCTTCGAAATACTGAGCCGGAAA 60.056 43.478 5.05 0.00 0.00 3.13
789 806 3.536956 TCGAAATACTGAGCCGGAAAT 57.463 42.857 5.05 0.00 0.00 2.17
790 807 3.454375 TCGAAATACTGAGCCGGAAATC 58.546 45.455 5.05 0.00 0.00 2.17
791 808 2.544267 CGAAATACTGAGCCGGAAATCC 59.456 50.000 5.05 0.00 0.00 3.01
808 825 7.576861 GGAAATCCGGAAATAAATACAGGAA 57.423 36.000 9.01 0.00 32.50 3.36
809 826 8.178313 GGAAATCCGGAAATAAATACAGGAAT 57.822 34.615 9.01 0.00 32.50 3.01
810 827 9.292195 GGAAATCCGGAAATAAATACAGGAATA 57.708 33.333 9.01 0.00 32.50 1.75
814 831 9.672673 ATCCGGAAATAAATACAGGAATAGATG 57.327 33.333 9.01 0.00 32.50 2.90
815 832 7.606456 TCCGGAAATAAATACAGGAATAGATGC 59.394 37.037 0.00 0.00 0.00 3.91
816 833 7.413000 CCGGAAATAAATACAGGAATAGATGCG 60.413 40.741 0.00 0.00 0.00 4.73
817 834 7.330946 CGGAAATAAATACAGGAATAGATGCGA 59.669 37.037 0.00 0.00 0.00 5.10
818 835 8.660373 GGAAATAAATACAGGAATAGATGCGAG 58.340 37.037 0.00 0.00 0.00 5.03
819 836 7.602517 AATAAATACAGGAATAGATGCGAGC 57.397 36.000 0.00 0.00 0.00 5.03
820 837 4.607293 AATACAGGAATAGATGCGAGCA 57.393 40.909 0.00 0.00 0.00 4.26
821 838 4.815533 ATACAGGAATAGATGCGAGCAT 57.184 40.909 10.66 10.66 39.69 3.79
831 848 2.336945 ATGCGAGCATCAGGATTTGA 57.663 45.000 4.52 0.00 40.85 2.69
832 849 2.112380 TGCGAGCATCAGGATTTGAA 57.888 45.000 0.00 0.00 39.77 2.69
833 850 1.739466 TGCGAGCATCAGGATTTGAAC 59.261 47.619 0.00 0.00 39.77 3.18
834 851 2.012673 GCGAGCATCAGGATTTGAACT 58.987 47.619 0.00 0.00 39.77 3.01
835 852 2.031437 GCGAGCATCAGGATTTGAACTC 59.969 50.000 0.00 0.00 39.77 3.01
836 853 3.529533 CGAGCATCAGGATTTGAACTCT 58.470 45.455 0.00 0.00 39.30 3.24
837 854 3.309138 CGAGCATCAGGATTTGAACTCTG 59.691 47.826 0.00 0.00 39.30 3.35
838 855 4.511527 GAGCATCAGGATTTGAACTCTGA 58.488 43.478 0.00 0.00 39.77 3.27
839 856 5.113446 AGCATCAGGATTTGAACTCTGAT 57.887 39.130 0.00 0.00 44.79 2.90
842 859 4.226427 TCAGGATTTGAACTCTGATGGG 57.774 45.455 0.00 0.00 32.10 4.00
843 860 3.588842 TCAGGATTTGAACTCTGATGGGT 59.411 43.478 0.00 0.00 32.10 4.51
844 861 4.043310 TCAGGATTTGAACTCTGATGGGTT 59.957 41.667 0.00 0.00 32.10 4.11
845 862 4.157289 CAGGATTTGAACTCTGATGGGTTG 59.843 45.833 0.00 0.00 0.00 3.77
846 863 3.445096 GGATTTGAACTCTGATGGGTTGG 59.555 47.826 0.00 0.00 0.00 3.77
847 864 2.584835 TTGAACTCTGATGGGTTGGG 57.415 50.000 0.00 0.00 0.00 4.12
848 865 1.741028 TGAACTCTGATGGGTTGGGA 58.259 50.000 0.00 0.00 0.00 4.37
849 866 2.061848 TGAACTCTGATGGGTTGGGAA 58.938 47.619 0.00 0.00 0.00 3.97
850 867 2.649312 TGAACTCTGATGGGTTGGGAAT 59.351 45.455 0.00 0.00 0.00 3.01
851 868 3.849574 TGAACTCTGATGGGTTGGGAATA 59.150 43.478 0.00 0.00 0.00 1.75
852 869 3.933861 ACTCTGATGGGTTGGGAATAC 57.066 47.619 0.00 0.00 0.00 1.89
853 870 2.509964 ACTCTGATGGGTTGGGAATACC 59.490 50.000 0.00 0.00 40.81 2.73
862 879 2.785743 TGGGAATACCACAGTGGCT 58.214 52.632 20.48 9.52 46.80 4.75
863 880 0.618458 TGGGAATACCACAGTGGCTC 59.382 55.000 20.48 13.23 46.80 4.70
864 881 0.912486 GGGAATACCACAGTGGCTCT 59.088 55.000 20.48 3.37 42.67 4.09
865 882 2.116238 GGGAATACCACAGTGGCTCTA 58.884 52.381 20.48 5.13 42.67 2.43
866 883 2.504175 GGGAATACCACAGTGGCTCTAA 59.496 50.000 20.48 0.54 42.67 2.10
867 884 3.532542 GGAATACCACAGTGGCTCTAAC 58.467 50.000 20.48 6.53 42.67 2.34
868 885 3.532542 GAATACCACAGTGGCTCTAACC 58.467 50.000 20.48 0.00 42.67 2.85
869 886 2.018355 TACCACAGTGGCTCTAACCA 57.982 50.000 20.48 0.00 42.67 3.67
870 887 1.362224 ACCACAGTGGCTCTAACCAT 58.638 50.000 20.48 0.00 42.67 3.55
871 888 1.279271 ACCACAGTGGCTCTAACCATC 59.721 52.381 20.48 0.00 42.67 3.51
872 889 1.407437 CCACAGTGGCTCTAACCATCC 60.407 57.143 6.67 0.00 43.01 3.51
873 890 1.278985 CACAGTGGCTCTAACCATCCA 59.721 52.381 0.00 0.00 43.01 3.41
874 891 1.985159 ACAGTGGCTCTAACCATCCAA 59.015 47.619 0.00 0.00 43.01 3.53
875 892 2.290323 ACAGTGGCTCTAACCATCCAAC 60.290 50.000 0.00 0.00 43.01 3.77
876 893 1.282157 AGTGGCTCTAACCATCCAACC 59.718 52.381 0.00 0.00 43.01 3.77
877 894 1.004277 GTGGCTCTAACCATCCAACCA 59.996 52.381 0.00 0.00 43.01 3.67
878 895 1.004277 TGGCTCTAACCATCCAACCAC 59.996 52.381 0.00 0.00 33.75 4.16
879 896 1.004277 GGCTCTAACCATCCAACCACA 59.996 52.381 0.00 0.00 0.00 4.17
880 897 2.357154 GGCTCTAACCATCCAACCACAT 60.357 50.000 0.00 0.00 0.00 3.21
881 898 3.118038 GGCTCTAACCATCCAACCACATA 60.118 47.826 0.00 0.00 0.00 2.29
882 899 4.446311 GGCTCTAACCATCCAACCACATAT 60.446 45.833 0.00 0.00 0.00 1.78
883 900 5.133221 GCTCTAACCATCCAACCACATATT 58.867 41.667 0.00 0.00 0.00 1.28
884 901 5.009010 GCTCTAACCATCCAACCACATATTG 59.991 44.000 0.00 0.00 0.00 1.90
898 915 5.280945 CCACATATTGGTTCGCTAATTTGG 58.719 41.667 0.00 0.00 41.10 3.28
914 931 0.882927 TTGGCGTACTTGTGACCTGC 60.883 55.000 0.00 0.00 0.00 4.85
916 933 0.882927 GGCGTACTTGTGACCTGCAA 60.883 55.000 0.00 0.00 0.00 4.08
919 936 1.873903 CGTACTTGTGACCTGCAAGCT 60.874 52.381 5.12 0.00 45.09 3.74
920 937 1.532868 GTACTTGTGACCTGCAAGCTG 59.467 52.381 5.12 0.00 45.09 4.24
921 938 0.107017 ACTTGTGACCTGCAAGCTGT 60.107 50.000 5.12 0.00 45.09 4.40
931 948 1.211190 GCAAGCTGTTGTAGGCTGC 59.789 57.895 0.00 0.00 38.91 5.25
940 957 1.946768 GTTGTAGGCTGCAGTTTGTGA 59.053 47.619 16.64 0.00 0.00 3.58
950 967 1.194772 GCAGTTTGTGAGCCGTTCTAC 59.805 52.381 0.00 0.00 0.00 2.59
1032 1090 0.944311 CGTCCTCCCACACAAACTCG 60.944 60.000 0.00 0.00 0.00 4.18
1034 1092 1.071471 CCTCCCACACAAACTCGCT 59.929 57.895 0.00 0.00 0.00 4.93
1082 1140 1.214367 CTCGCTGGTTAACAACACGT 58.786 50.000 8.10 0.00 0.00 4.49
1243 1301 4.394078 TTCGTCGTCGGCTCCACG 62.394 66.667 1.55 0.00 38.67 4.94
1352 1410 0.814457 CTACTTCGAGCAGCTGGAGT 59.186 55.000 17.12 5.32 0.00 3.85
1388 1446 3.997400 CTGGACGAGCTCCTCCGGA 62.997 68.421 27.63 2.93 40.26 5.14
1508 1566 3.545574 TGCTCACCCAGACGTGCA 61.546 61.111 0.00 0.00 33.57 4.57
1602 1660 2.219325 GAGCTCCCTGGACTGTCGTG 62.219 65.000 0.87 0.00 0.00 4.35
1643 1701 2.623915 CCGACGTTCCTGACCGACT 61.624 63.158 0.00 0.00 0.00 4.18
1644 1702 1.154263 CGACGTTCCTGACCGACTC 60.154 63.158 0.00 0.00 0.00 3.36
1678 1736 1.731700 GTCCCTACGCGACATGCTA 59.268 57.895 15.93 0.00 43.27 3.49
1739 1797 1.268899 TCGTCAACTCCTTCTTCGACC 59.731 52.381 0.00 0.00 0.00 4.79
1798 1856 0.880278 ATCATATGCCGCGTGTGTCC 60.880 55.000 4.92 0.00 0.00 4.02
1888 1953 3.995669 TCGCTCGCAACGTGCAAC 61.996 61.111 13.47 0.00 45.36 4.17
1913 1978 6.253298 CCAATTGACGTTTACTGCCATTAATG 59.747 38.462 7.12 8.58 0.00 1.90
1945 2010 4.664677 GCACTGACGACACCGGCT 62.665 66.667 0.00 0.00 45.98 5.52
1948 2013 1.900016 ACTGACGACACCGGCTACA 60.900 57.895 0.00 0.00 45.98 2.74
1949 2014 1.443872 CTGACGACACCGGCTACAC 60.444 63.158 0.00 0.00 45.98 2.90
1950 2015 1.863662 CTGACGACACCGGCTACACT 61.864 60.000 0.00 0.00 45.98 3.55
1976 2042 1.933853 CTTACGTATGTGCAGGAAGCC 59.066 52.381 0.00 0.00 44.83 4.35
2546 2624 1.392534 GAAGGGGGAGGTGGAGAGA 59.607 63.158 0.00 0.00 0.00 3.10
2581 2668 1.847798 ATGGGCGGCAAGGAGTACAA 61.848 55.000 12.47 0.00 0.00 2.41
2691 2778 3.988379 AATATCGCGTGGCAAAATGAT 57.012 38.095 5.77 0.00 0.00 2.45
2697 2784 1.130373 GCGTGGCAAAATGATCTCGAA 59.870 47.619 0.00 0.00 0.00 3.71
2698 2785 2.774007 CGTGGCAAAATGATCTCGAAC 58.226 47.619 0.00 0.00 0.00 3.95
2716 2804 6.477033 TCTCGAACACTTTTCAGAAGAAGAAG 59.523 38.462 10.36 2.57 34.71 2.85
2720 2808 7.962918 CGAACACTTTTCAGAAGAAGAAGAAAA 59.037 33.333 10.36 0.00 37.56 2.29
2749 2839 5.116069 GAGAACTCGAGACTATTGGGATC 57.884 47.826 21.68 0.60 0.00 3.36
2750 2840 4.798882 AGAACTCGAGACTATTGGGATCT 58.201 43.478 21.68 3.78 0.00 2.75
2751 2841 4.582656 AGAACTCGAGACTATTGGGATCTG 59.417 45.833 21.68 0.00 0.00 2.90
2752 2842 3.904717 ACTCGAGACTATTGGGATCTGT 58.095 45.455 21.68 0.00 0.00 3.41
2753 2843 3.634448 ACTCGAGACTATTGGGATCTGTG 59.366 47.826 21.68 0.00 0.00 3.66
2754 2844 2.959030 TCGAGACTATTGGGATCTGTGG 59.041 50.000 0.00 0.00 0.00 4.17
2755 2845 2.695666 CGAGACTATTGGGATCTGTGGT 59.304 50.000 0.00 0.00 0.00 4.16
2756 2846 3.243569 CGAGACTATTGGGATCTGTGGTC 60.244 52.174 0.00 0.00 0.00 4.02
2859 2951 8.398878 ACTATCAAATTTTTCCTAAACCGTGA 57.601 30.769 0.00 0.00 0.00 4.35
3058 3155 0.336737 ATCCTCTCCCCTCTCGTTGT 59.663 55.000 0.00 0.00 0.00 3.32
3420 3532 9.124807 GGCAAATTAGTAAGATGTGTTTGTTAC 57.875 33.333 6.36 0.00 0.00 2.50
3460 3578 5.661056 ACTGTATTGCACTTGTAGCTCTA 57.339 39.130 0.00 0.00 0.00 2.43
3625 3744 4.037222 TCATTGCTAGTGAAGGGTATGGA 58.963 43.478 0.00 0.00 0.00 3.41
3725 3844 6.275335 AGTGTTCATGAAATGTTGGAGTTTG 58.725 36.000 10.35 0.00 46.80 2.93
3731 3850 9.829507 TTCATGAAATGTTGGAGTTTGTTAATT 57.170 25.926 5.45 0.00 46.80 1.40
3969 4088 5.581605 TGAAGTGTCTGAATTTTGTTCTGC 58.418 37.500 0.00 0.00 0.00 4.26
4004 4123 1.483827 CAGATGGGAGTGCTGAAGCTA 59.516 52.381 3.61 0.00 42.66 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.339466 ACTTGGATAGCCGACATTTAAAAAGAT 59.661 33.333 0.00 0.00 36.79 2.40
2 3 6.852664 ACTTGGATAGCCGACATTTAAAAAG 58.147 36.000 0.00 0.00 36.79 2.27
3 4 6.827586 ACTTGGATAGCCGACATTTAAAAA 57.172 33.333 0.00 0.00 36.79 1.94
4 5 6.827586 AACTTGGATAGCCGACATTTAAAA 57.172 33.333 0.00 0.00 36.79 1.52
42 43 5.192176 CCCTAAGGACGTAGAGAAGTAAGT 58.808 45.833 0.00 0.00 33.47 2.24
50 51 5.517904 CGATAAAACCCTAAGGACGTAGAG 58.482 45.833 0.00 0.00 36.73 2.43
54 55 2.419159 GGCGATAAAACCCTAAGGACGT 60.419 50.000 0.00 0.00 36.73 4.34
56 57 2.569059 GGGCGATAAAACCCTAAGGAC 58.431 52.381 0.00 0.00 43.36 3.85
61 62 0.841289 CTGGGGGCGATAAAACCCTA 59.159 55.000 0.00 0.00 46.19 3.53
101 102 1.603456 TCGAAAGCCATTGAGCAACA 58.397 45.000 0.00 0.00 34.23 3.33
102 103 2.095059 ACATCGAAAGCCATTGAGCAAC 60.095 45.455 0.00 0.00 34.23 4.17
122 123 3.001330 CGCGAAATAGGGATTGTGAGAAC 59.999 47.826 0.00 0.00 0.00 3.01
137 140 0.107456 AGGAGATGATGGCGCGAAAT 59.893 50.000 12.10 0.72 0.00 2.17
140 143 1.660355 GTAGGAGATGATGGCGCGA 59.340 57.895 12.10 0.00 0.00 5.87
144 147 2.300437 GGTAGTGGTAGGAGATGATGGC 59.700 54.545 0.00 0.00 0.00 4.40
150 153 4.169068 AGAGATGTGGTAGTGGTAGGAGAT 59.831 45.833 0.00 0.00 0.00 2.75
157 160 2.290323 GGCAAAGAGATGTGGTAGTGGT 60.290 50.000 0.00 0.00 0.00 4.16
160 163 1.985159 TGGGCAAAGAGATGTGGTAGT 59.015 47.619 0.00 0.00 0.00 2.73
170 173 3.006110 ACAACATTGTGATGGGCAAAGAG 59.994 43.478 0.00 0.00 40.49 2.85
173 176 3.464907 CAACAACATTGTGATGGGCAAA 58.535 40.909 0.00 0.00 41.31 3.68
224 229 9.709495 CTCTAAATTGCTAGCTTATCTTCATCT 57.291 33.333 17.23 0.00 0.00 2.90
245 250 3.699538 TGCCTCTTGCTTATCGTCTCTAA 59.300 43.478 0.00 0.00 42.00 2.10
246 251 3.066900 GTGCCTCTTGCTTATCGTCTCTA 59.933 47.826 0.00 0.00 42.00 2.43
264 278 2.436417 TCCTTGCTTCACAATAGTGCC 58.564 47.619 0.00 0.00 45.49 5.01
314 328 0.817013 CAATACCCGTTGCCATTGCT 59.183 50.000 0.00 0.00 38.71 3.91
331 345 2.346766 TGCTTCTCACAAGCTTCCAA 57.653 45.000 0.00 0.00 43.38 3.53
332 346 2.574006 ATGCTTCTCACAAGCTTCCA 57.426 45.000 0.00 0.00 43.38 3.53
336 350 2.165998 GGGAAATGCTTCTCACAAGCT 58.834 47.619 7.78 0.00 43.38 3.74
338 352 1.821136 GGGGGAAATGCTTCTCACAAG 59.179 52.381 0.00 0.00 35.29 3.16
370 386 4.554134 GCTCTAACCAGAAAACGGACAAAC 60.554 45.833 0.00 0.00 0.00 2.93
390 406 1.807142 CTTCGTCTTTTTCCCTGGCTC 59.193 52.381 0.00 0.00 0.00 4.70
392 408 0.881796 CCTTCGTCTTTTTCCCTGGC 59.118 55.000 0.00 0.00 0.00 4.85
396 412 2.152016 CTCCACCTTCGTCTTTTTCCC 58.848 52.381 0.00 0.00 0.00 3.97
403 419 4.087182 TGATTTAGACTCCACCTTCGTCT 58.913 43.478 0.00 0.00 40.74 4.18
404 420 4.425520 CTGATTTAGACTCCACCTTCGTC 58.574 47.826 0.00 0.00 0.00 4.20
405 421 3.368531 GCTGATTTAGACTCCACCTTCGT 60.369 47.826 0.00 0.00 0.00 3.85
406 422 3.190874 GCTGATTTAGACTCCACCTTCG 58.809 50.000 0.00 0.00 0.00 3.79
407 423 4.207891 TGCTGATTTAGACTCCACCTTC 57.792 45.455 0.00 0.00 0.00 3.46
409 425 4.640771 TTTGCTGATTTAGACTCCACCT 57.359 40.909 0.00 0.00 0.00 4.00
410 426 4.379918 GCTTTTGCTGATTTAGACTCCACC 60.380 45.833 0.00 0.00 43.35 4.61
411 427 4.727475 GCTTTTGCTGATTTAGACTCCAC 58.273 43.478 0.00 0.00 43.35 4.02
453 469 5.477291 TCTCTTCATTCTTAGAGACGGTTGT 59.523 40.000 0.00 0.00 41.37 3.32
488 504 0.382515 CTAGCCGAGAGTGTAGGTGC 59.617 60.000 0.00 0.00 0.00 5.01
496 512 2.792878 ACTTGTACACTAGCCGAGAGT 58.207 47.619 0.00 0.00 33.14 3.24
504 520 9.285770 GTTTCCAAAAGAAAACTTGTACACTAG 57.714 33.333 0.00 0.00 45.93 2.57
536 552 2.107378 TCCTTGCCAATCAACCTACACA 59.893 45.455 0.00 0.00 0.00 3.72
540 556 5.417580 GTGTATTTCCTTGCCAATCAACCTA 59.582 40.000 0.00 0.00 0.00 3.08
553 569 4.375313 AGGGAGATGAGGTGTATTTCCTT 58.625 43.478 0.00 0.00 35.20 3.36
642 659 7.878127 ACACCCTTCGATTCATACTATTTATGG 59.122 37.037 0.00 0.00 0.00 2.74
643 660 8.833231 ACACCCTTCGATTCATACTATTTATG 57.167 34.615 0.00 0.00 0.00 1.90
650 667 4.819105 TTGACACCCTTCGATTCATACT 57.181 40.909 0.00 0.00 0.00 2.12
651 668 5.873179 TTTTGACACCCTTCGATTCATAC 57.127 39.130 0.00 0.00 0.00 2.39
655 672 3.551551 CGTTTTTGACACCCTTCGATTC 58.448 45.455 0.00 0.00 0.00 2.52
656 673 2.287368 GCGTTTTTGACACCCTTCGATT 60.287 45.455 0.00 0.00 0.00 3.34
659 676 0.661020 AGCGTTTTTGACACCCTTCG 59.339 50.000 0.00 0.00 0.00 3.79
661 678 2.052782 AGAGCGTTTTTGACACCCTT 57.947 45.000 0.00 0.00 0.00 3.95
669 686 9.793245 CCGTCTTATAATATAAGAGCGTTTTTG 57.207 33.333 25.01 15.39 34.59 2.44
671 688 9.924650 ATCCGTCTTATAATATAAGAGCGTTTT 57.075 29.630 25.01 15.68 34.59 2.43
672 689 9.924650 AATCCGTCTTATAATATAAGAGCGTTT 57.075 29.630 25.01 19.76 34.59 3.60
673 690 9.355215 CAATCCGTCTTATAATATAAGAGCGTT 57.645 33.333 25.01 18.03 34.59 4.84
674 691 8.737175 TCAATCCGTCTTATAATATAAGAGCGT 58.263 33.333 25.01 15.29 34.59 5.07
675 692 9.227490 CTCAATCCGTCTTATAATATAAGAGCG 57.773 37.037 19.73 21.63 34.59 5.03
689 706 8.936864 CAAATTAGAAAGTACTCAATCCGTCTT 58.063 33.333 0.00 0.00 0.00 3.01
690 707 7.549488 CCAAATTAGAAAGTACTCAATCCGTCT 59.451 37.037 0.00 0.00 0.00 4.18
691 708 7.676572 GCCAAATTAGAAAGTACTCAATCCGTC 60.677 40.741 0.00 0.00 0.00 4.79
692 709 6.093633 GCCAAATTAGAAAGTACTCAATCCGT 59.906 38.462 0.00 0.00 0.00 4.69
693 710 6.487103 GCCAAATTAGAAAGTACTCAATCCG 58.513 40.000 0.00 0.00 0.00 4.18
694 711 6.093633 ACGCCAAATTAGAAAGTACTCAATCC 59.906 38.462 0.00 0.00 0.00 3.01
695 712 7.073342 ACGCCAAATTAGAAAGTACTCAATC 57.927 36.000 0.00 0.00 0.00 2.67
696 713 7.604927 TGTACGCCAAATTAGAAAGTACTCAAT 59.395 33.333 0.00 0.00 35.40 2.57
697 714 6.930164 TGTACGCCAAATTAGAAAGTACTCAA 59.070 34.615 0.00 0.00 35.40 3.02
698 715 6.457355 TGTACGCCAAATTAGAAAGTACTCA 58.543 36.000 0.00 0.00 35.40 3.41
699 716 6.956299 TGTACGCCAAATTAGAAAGTACTC 57.044 37.500 0.00 0.00 35.40 2.59
700 717 7.916914 AATGTACGCCAAATTAGAAAGTACT 57.083 32.000 0.00 0.00 35.40 2.73
701 718 8.959734 AAAATGTACGCCAAATTAGAAAGTAC 57.040 30.769 0.00 0.00 35.07 2.73
725 742 4.094212 GTGCGTTTGTACCGTGTTAAAAA 58.906 39.130 0.00 0.00 0.00 1.94
726 743 3.125829 TGTGCGTTTGTACCGTGTTAAAA 59.874 39.130 0.00 0.00 0.00 1.52
727 744 2.674852 TGTGCGTTTGTACCGTGTTAAA 59.325 40.909 0.00 0.00 0.00 1.52
728 745 2.030213 GTGTGCGTTTGTACCGTGTTAA 59.970 45.455 0.00 0.00 0.00 2.01
729 746 1.592081 GTGTGCGTTTGTACCGTGTTA 59.408 47.619 0.00 0.00 0.00 2.41
730 747 0.374410 GTGTGCGTTTGTACCGTGTT 59.626 50.000 0.00 0.00 0.00 3.32
731 748 0.460635 AGTGTGCGTTTGTACCGTGT 60.461 50.000 0.00 0.00 0.00 4.49
732 749 0.231279 GAGTGTGCGTTTGTACCGTG 59.769 55.000 0.00 0.00 0.00 4.94
733 750 0.103572 AGAGTGTGCGTTTGTACCGT 59.896 50.000 0.00 0.00 0.00 4.83
734 751 2.054687 TAGAGTGTGCGTTTGTACCG 57.945 50.000 0.00 0.00 0.00 4.02
735 752 2.928116 GGATAGAGTGTGCGTTTGTACC 59.072 50.000 0.00 0.00 0.00 3.34
736 753 2.928116 GGGATAGAGTGTGCGTTTGTAC 59.072 50.000 0.00 0.00 0.00 2.90
737 754 2.829720 AGGGATAGAGTGTGCGTTTGTA 59.170 45.455 0.00 0.00 0.00 2.41
738 755 1.623811 AGGGATAGAGTGTGCGTTTGT 59.376 47.619 0.00 0.00 0.00 2.83
739 756 2.386661 AGGGATAGAGTGTGCGTTTG 57.613 50.000 0.00 0.00 0.00 2.93
740 757 3.704566 TCATAGGGATAGAGTGTGCGTTT 59.295 43.478 0.00 0.00 0.00 3.60
741 758 3.296854 TCATAGGGATAGAGTGTGCGTT 58.703 45.455 0.00 0.00 0.00 4.84
742 759 2.887783 CTCATAGGGATAGAGTGTGCGT 59.112 50.000 0.00 0.00 0.00 5.24
743 760 2.352225 GCTCATAGGGATAGAGTGTGCG 60.352 54.545 0.00 0.00 0.00 5.34
744 761 2.630098 TGCTCATAGGGATAGAGTGTGC 59.370 50.000 0.00 0.00 0.00 4.57
745 762 4.771577 AGATGCTCATAGGGATAGAGTGTG 59.228 45.833 0.00 0.00 0.00 3.82
746 763 5.009436 AGATGCTCATAGGGATAGAGTGT 57.991 43.478 0.00 0.00 0.00 3.55
747 764 5.392919 CGAAGATGCTCATAGGGATAGAGTG 60.393 48.000 0.00 0.00 0.00 3.51
748 765 4.704540 CGAAGATGCTCATAGGGATAGAGT 59.295 45.833 0.00 0.00 0.00 3.24
749 766 4.946772 TCGAAGATGCTCATAGGGATAGAG 59.053 45.833 0.00 0.00 0.00 2.43
750 767 4.923415 TCGAAGATGCTCATAGGGATAGA 58.077 43.478 0.00 0.00 0.00 1.98
751 768 5.651387 TTCGAAGATGCTCATAGGGATAG 57.349 43.478 0.00 0.00 35.04 2.08
752 769 6.611613 ATTTCGAAGATGCTCATAGGGATA 57.388 37.500 0.00 0.00 35.04 2.59
753 770 4.963318 TTTCGAAGATGCTCATAGGGAT 57.037 40.909 0.00 0.00 35.04 3.85
754 771 4.963318 ATTTCGAAGATGCTCATAGGGA 57.037 40.909 0.00 0.00 35.04 4.20
755 772 5.636965 CAGTATTTCGAAGATGCTCATAGGG 59.363 44.000 0.00 0.00 35.04 3.53
756 773 6.450545 TCAGTATTTCGAAGATGCTCATAGG 58.549 40.000 0.00 0.00 35.04 2.57
757 774 6.089283 GCTCAGTATTTCGAAGATGCTCATAG 59.911 42.308 0.00 3.77 35.04 2.23
758 775 5.923114 GCTCAGTATTTCGAAGATGCTCATA 59.077 40.000 0.00 0.00 35.04 2.15
759 776 4.749099 GCTCAGTATTTCGAAGATGCTCAT 59.251 41.667 0.00 0.00 35.04 2.90
760 777 4.115516 GCTCAGTATTTCGAAGATGCTCA 58.884 43.478 0.00 0.00 35.04 4.26
761 778 3.492756 GGCTCAGTATTTCGAAGATGCTC 59.507 47.826 0.00 0.00 35.04 4.26
762 779 3.462021 GGCTCAGTATTTCGAAGATGCT 58.538 45.455 0.00 1.89 35.04 3.79
763 780 2.219674 CGGCTCAGTATTTCGAAGATGC 59.780 50.000 0.00 0.00 35.04 3.91
764 781 2.797156 CCGGCTCAGTATTTCGAAGATG 59.203 50.000 0.00 0.00 35.04 2.90
765 782 2.693591 TCCGGCTCAGTATTTCGAAGAT 59.306 45.455 0.00 0.00 35.04 2.40
766 783 2.097036 TCCGGCTCAGTATTTCGAAGA 58.903 47.619 0.00 0.00 0.00 2.87
767 784 2.579207 TCCGGCTCAGTATTTCGAAG 57.421 50.000 0.00 0.00 0.00 3.79
768 785 3.322211 TTTCCGGCTCAGTATTTCGAA 57.678 42.857 0.00 0.00 0.00 3.71
769 786 3.454375 GATTTCCGGCTCAGTATTTCGA 58.546 45.455 0.00 0.00 0.00 3.71
770 787 2.544267 GGATTTCCGGCTCAGTATTTCG 59.456 50.000 0.00 0.00 0.00 3.46
784 801 7.576861 TTCCTGTATTTATTTCCGGATTTCC 57.423 36.000 4.15 0.00 0.00 3.13
788 805 9.672673 CATCTATTCCTGTATTTATTTCCGGAT 57.327 33.333 4.15 0.00 0.00 4.18
789 806 7.606456 GCATCTATTCCTGTATTTATTTCCGGA 59.394 37.037 0.00 0.00 0.00 5.14
790 807 7.413000 CGCATCTATTCCTGTATTTATTTCCGG 60.413 40.741 0.00 0.00 0.00 5.14
791 808 7.330946 TCGCATCTATTCCTGTATTTATTTCCG 59.669 37.037 0.00 0.00 0.00 4.30
792 809 8.547967 TCGCATCTATTCCTGTATTTATTTCC 57.452 34.615 0.00 0.00 0.00 3.13
793 810 8.171840 GCTCGCATCTATTCCTGTATTTATTTC 58.828 37.037 0.00 0.00 0.00 2.17
794 811 7.661437 TGCTCGCATCTATTCCTGTATTTATTT 59.339 33.333 0.00 0.00 0.00 1.40
795 812 7.161404 TGCTCGCATCTATTCCTGTATTTATT 58.839 34.615 0.00 0.00 0.00 1.40
796 813 6.701340 TGCTCGCATCTATTCCTGTATTTAT 58.299 36.000 0.00 0.00 0.00 1.40
797 814 6.096673 TGCTCGCATCTATTCCTGTATTTA 57.903 37.500 0.00 0.00 0.00 1.40
798 815 4.960938 TGCTCGCATCTATTCCTGTATTT 58.039 39.130 0.00 0.00 0.00 1.40
799 816 4.607293 TGCTCGCATCTATTCCTGTATT 57.393 40.909 0.00 0.00 0.00 1.89
800 817 4.753233 GATGCTCGCATCTATTCCTGTAT 58.247 43.478 21.28 0.00 46.67 2.29
801 818 4.179926 GATGCTCGCATCTATTCCTGTA 57.820 45.455 21.28 0.00 46.67 2.74
802 819 3.037431 GATGCTCGCATCTATTCCTGT 57.963 47.619 21.28 0.00 46.67 4.00
812 829 2.336945 TCAAATCCTGATGCTCGCAT 57.663 45.000 3.70 3.70 39.69 4.73
813 830 1.739466 GTTCAAATCCTGATGCTCGCA 59.261 47.619 0.00 0.00 32.78 5.10
814 831 2.012673 AGTTCAAATCCTGATGCTCGC 58.987 47.619 0.00 0.00 32.78 5.03
815 832 3.309138 CAGAGTTCAAATCCTGATGCTCG 59.691 47.826 0.00 0.00 39.50 5.03
816 833 4.511527 TCAGAGTTCAAATCCTGATGCTC 58.488 43.478 0.00 0.00 37.01 4.26
817 834 4.564782 TCAGAGTTCAAATCCTGATGCT 57.435 40.909 0.00 0.00 32.78 3.79
820 837 4.229123 ACCCATCAGAGTTCAAATCCTGAT 59.771 41.667 0.00 0.00 44.48 2.90
821 838 3.588842 ACCCATCAGAGTTCAAATCCTGA 59.411 43.478 0.00 0.00 39.60 3.86
822 839 3.960571 ACCCATCAGAGTTCAAATCCTG 58.039 45.455 0.00 0.00 0.00 3.86
823 840 4.338879 CAACCCATCAGAGTTCAAATCCT 58.661 43.478 0.00 0.00 0.00 3.24
824 841 3.445096 CCAACCCATCAGAGTTCAAATCC 59.555 47.826 0.00 0.00 0.00 3.01
825 842 3.445096 CCCAACCCATCAGAGTTCAAATC 59.555 47.826 0.00 0.00 0.00 2.17
826 843 3.075882 TCCCAACCCATCAGAGTTCAAAT 59.924 43.478 0.00 0.00 0.00 2.32
827 844 2.445145 TCCCAACCCATCAGAGTTCAAA 59.555 45.455 0.00 0.00 0.00 2.69
828 845 2.061848 TCCCAACCCATCAGAGTTCAA 58.938 47.619 0.00 0.00 0.00 2.69
829 846 1.741028 TCCCAACCCATCAGAGTTCA 58.259 50.000 0.00 0.00 0.00 3.18
830 847 2.879103 TTCCCAACCCATCAGAGTTC 57.121 50.000 0.00 0.00 0.00 3.01
831 848 3.053619 GGTATTCCCAACCCATCAGAGTT 60.054 47.826 0.00 0.00 0.00 3.01
832 849 2.509964 GGTATTCCCAACCCATCAGAGT 59.490 50.000 0.00 0.00 0.00 3.24
833 850 2.509548 TGGTATTCCCAACCCATCAGAG 59.490 50.000 0.00 0.00 41.50 3.35
834 851 2.567862 TGGTATTCCCAACCCATCAGA 58.432 47.619 0.00 0.00 41.50 3.27
844 861 0.618458 GAGCCACTGTGGTATTCCCA 59.382 55.000 26.48 0.00 40.46 4.37
845 862 0.912486 AGAGCCACTGTGGTATTCCC 59.088 55.000 26.48 9.93 40.46 3.97
846 863 3.532542 GTTAGAGCCACTGTGGTATTCC 58.467 50.000 26.48 10.64 40.46 3.01
847 864 3.055385 TGGTTAGAGCCACTGTGGTATTC 60.055 47.826 26.48 20.25 40.46 1.75
848 865 2.910319 TGGTTAGAGCCACTGTGGTATT 59.090 45.455 26.48 13.55 40.46 1.89
849 866 2.546899 TGGTTAGAGCCACTGTGGTAT 58.453 47.619 26.48 16.39 40.46 2.73
850 867 2.018355 TGGTTAGAGCCACTGTGGTA 57.982 50.000 26.48 9.87 40.46 3.25
851 868 1.279271 GATGGTTAGAGCCACTGTGGT 59.721 52.381 26.48 14.20 41.94 4.16
852 869 1.407437 GGATGGTTAGAGCCACTGTGG 60.407 57.143 22.46 22.46 41.94 4.17
853 870 1.278985 TGGATGGTTAGAGCCACTGTG 59.721 52.381 0.00 0.00 41.94 3.66
854 871 1.656587 TGGATGGTTAGAGCCACTGT 58.343 50.000 0.00 0.00 41.94 3.55
855 872 2.359900 GTTGGATGGTTAGAGCCACTG 58.640 52.381 0.00 0.00 41.94 3.66
856 873 1.282157 GGTTGGATGGTTAGAGCCACT 59.718 52.381 0.00 0.00 41.94 4.00
857 874 1.004277 TGGTTGGATGGTTAGAGCCAC 59.996 52.381 0.00 0.00 41.94 5.01
858 875 1.004277 GTGGTTGGATGGTTAGAGCCA 59.996 52.381 0.00 0.00 43.48 4.75
859 876 1.004277 TGTGGTTGGATGGTTAGAGCC 59.996 52.381 0.00 0.00 0.00 4.70
860 877 2.489938 TGTGGTTGGATGGTTAGAGC 57.510 50.000 0.00 0.00 0.00 4.09
861 878 6.624352 CAATATGTGGTTGGATGGTTAGAG 57.376 41.667 0.00 0.00 0.00 2.43
876 893 4.739716 GCCAAATTAGCGAACCAATATGTG 59.260 41.667 0.00 0.00 0.00 3.21
877 894 4.932146 GCCAAATTAGCGAACCAATATGT 58.068 39.130 0.00 0.00 0.00 2.29
889 906 3.425758 GGTCACAAGTACGCCAAATTAGC 60.426 47.826 0.00 0.00 0.00 3.09
890 907 4.000988 AGGTCACAAGTACGCCAAATTAG 58.999 43.478 0.00 0.00 0.00 1.73
891 908 3.749088 CAGGTCACAAGTACGCCAAATTA 59.251 43.478 0.00 0.00 0.00 1.40
892 909 2.552315 CAGGTCACAAGTACGCCAAATT 59.448 45.455 0.00 0.00 0.00 1.82
893 910 2.151202 CAGGTCACAAGTACGCCAAAT 58.849 47.619 0.00 0.00 0.00 2.32
894 911 1.588674 CAGGTCACAAGTACGCCAAA 58.411 50.000 0.00 0.00 0.00 3.28
895 912 0.882927 GCAGGTCACAAGTACGCCAA 60.883 55.000 0.00 0.00 0.00 4.52
896 913 1.301401 GCAGGTCACAAGTACGCCA 60.301 57.895 0.00 0.00 0.00 5.69
897 914 0.882927 TTGCAGGTCACAAGTACGCC 60.883 55.000 0.00 0.00 0.00 5.68
898 915 0.512952 CTTGCAGGTCACAAGTACGC 59.487 55.000 0.00 0.00 39.73 4.42
914 931 0.520404 CTGCAGCCTACAACAGCTTG 59.480 55.000 0.00 0.00 37.18 4.01
916 933 0.109342 AACTGCAGCCTACAACAGCT 59.891 50.000 15.27 0.00 40.89 4.24
919 936 1.675483 CACAAACTGCAGCCTACAACA 59.325 47.619 15.27 0.00 0.00 3.33
920 937 1.946768 TCACAAACTGCAGCCTACAAC 59.053 47.619 15.27 0.00 0.00 3.32
921 938 2.221169 CTCACAAACTGCAGCCTACAA 58.779 47.619 15.27 0.00 0.00 2.41
931 948 1.455786 CGTAGAACGGCTCACAAACTG 59.544 52.381 0.00 0.00 38.08 3.16
950 967 8.336080 GCTCCACTCTAATTATAAGAAAAACCG 58.664 37.037 2.85 0.00 0.00 4.44
981 1038 4.101741 GCTGGGTATATATGGAGGATGGAC 59.898 50.000 0.00 0.00 0.00 4.02
1032 1090 3.437049 AGAACGTTTCTTGGCTTATGAGC 59.563 43.478 0.46 0.00 42.03 4.26
1034 1092 4.000988 GGAGAACGTTTCTTGGCTTATGA 58.999 43.478 0.46 0.00 40.87 2.15
1074 1132 0.669318 CATGGCTACGGACGTGTTGT 60.669 55.000 7.73 0.00 33.01 3.32
1082 1140 2.267642 GTGCACCATGGCTACGGA 59.732 61.111 13.04 0.00 34.04 4.69
1223 1281 2.257676 GGAGCCGACGACGAACTT 59.742 61.111 9.28 0.00 42.66 2.66
1224 1282 2.981909 TGGAGCCGACGACGAACT 60.982 61.111 9.28 5.66 42.66 3.01
1276 1334 3.676605 TCGCAGCCGTCGGAGAAA 61.677 61.111 17.49 0.00 39.69 2.52
1508 1566 2.186160 TGTACACGACGTCCACGGT 61.186 57.895 10.58 5.68 44.95 4.83
1673 1731 2.017049 GGCGAACTGGTTCATTAGCAT 58.983 47.619 12.94 0.00 39.46 3.79
1678 1736 1.674322 CCCGGCGAACTGGTTCATT 60.674 57.895 9.30 0.00 41.25 2.57
1729 1787 0.174617 GAGGCTCCAGGTCGAAGAAG 59.825 60.000 2.15 0.00 39.69 2.85
1739 1797 2.583520 GCTCACCTGAGGCTCCAG 59.416 66.667 12.86 9.30 42.29 3.86
1798 1856 2.730672 GCACGTACGCTCTGCTTGG 61.731 63.158 16.72 0.00 0.00 3.61
1888 1953 3.848272 ATGGCAGTAAACGTCAATTGG 57.152 42.857 5.42 0.00 0.00 3.16
1913 1978 1.098050 AGTGCAAATGCTCGGAATCC 58.902 50.000 6.97 0.00 42.66 3.01
1945 2010 4.231439 CACATACGTAAGCACACAGTGTA 58.769 43.478 5.69 0.00 45.62 2.90
1948 2013 2.066262 GCACATACGTAAGCACACAGT 58.934 47.619 0.00 0.00 45.62 3.55
1949 2014 2.065512 TGCACATACGTAAGCACACAG 58.934 47.619 14.28 0.00 45.62 3.66
1950 2015 2.065512 CTGCACATACGTAAGCACACA 58.934 47.619 14.28 2.48 45.62 3.72
1976 2042 2.099831 GTCGACGCCAGGTACTCG 59.900 66.667 0.00 0.00 34.60 4.18
2227 2302 1.603455 CGCACCACCCACAGGAATT 60.603 57.895 0.00 0.00 36.73 2.17
2581 2668 4.049817 ACTCCGACGCCCTCCTCT 62.050 66.667 0.00 0.00 0.00 3.69
2601 2688 4.803908 GGCCTTGGCCTTCTCCCG 62.804 72.222 22.47 0.00 0.00 5.14
2638 2725 2.885644 CGATGTTGCGGTCGGAGG 60.886 66.667 0.00 0.00 34.39 4.30
2691 2778 5.902681 TCTTCTTCTGAAAAGTGTTCGAGA 58.097 37.500 10.15 0.00 0.00 4.04
2747 2837 6.440647 TGGTTAAATACTCTCAGACCACAGAT 59.559 38.462 0.00 0.00 31.26 2.90
2748 2838 5.778241 TGGTTAAATACTCTCAGACCACAGA 59.222 40.000 0.00 0.00 31.26 3.41
2749 2839 6.037786 TGGTTAAATACTCTCAGACCACAG 57.962 41.667 0.00 0.00 31.26 3.66
2750 2840 6.428083 TTGGTTAAATACTCTCAGACCACA 57.572 37.500 0.00 0.00 35.60 4.17
2751 2841 7.739498 TTTTGGTTAAATACTCTCAGACCAC 57.261 36.000 0.00 0.00 35.60 4.16
2752 2842 7.996644 AGTTTTTGGTTAAATACTCTCAGACCA 59.003 33.333 0.00 0.00 34.37 4.02
2753 2843 8.392372 AGTTTTTGGTTAAATACTCTCAGACC 57.608 34.615 0.00 0.00 34.37 3.85
2755 2845 9.498176 GGTAGTTTTTGGTTAAATACTCTCAGA 57.502 33.333 0.00 0.00 38.47 3.27
2756 2846 9.280174 TGGTAGTTTTTGGTTAAATACTCTCAG 57.720 33.333 0.00 0.00 38.47 3.35
2967 3060 1.216941 CCGTTAACAGCCGTCAACGT 61.217 55.000 7.67 0.00 41.53 3.99
3009 3102 2.047274 CATTGGCCGACCGACAGT 60.047 61.111 0.00 0.00 39.70 3.55
3058 3155 0.838608 GGGAGAGGACGGAGAGAGTA 59.161 60.000 0.00 0.00 0.00 2.59
3184 3290 2.124109 TCCAAACTTGTGCCGCCA 60.124 55.556 0.00 0.00 0.00 5.69
3187 3293 2.051345 GCGTCCAAACTTGTGCCG 60.051 61.111 0.00 0.00 0.00 5.69
3420 3532 9.811655 CAATACAGTTTACTACACAACAATCTG 57.188 33.333 0.00 0.00 0.00 2.90
3460 3578 8.879759 GTGCTCATGAATTGAATTGAAAATGAT 58.120 29.630 0.00 0.00 32.78 2.45
3625 3744 8.293699 TCACATAGTACATGTAATCACTCTGT 57.706 34.615 9.45 9.93 30.55 3.41
3825 3944 1.204467 CCACAACCTTTTGCACACAGT 59.796 47.619 0.00 0.00 36.00 3.55
3896 4015 2.548875 CTCTCTTTGAATCCTGCTCCG 58.451 52.381 0.00 0.00 0.00 4.63
3969 4088 5.434408 TCCCATCTGAATGAACTGAATCAG 58.566 41.667 8.98 8.98 40.46 2.90
4004 4123 7.092716 GCACACTCTATTTCCATTTGTTGAAT 58.907 34.615 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.