Multiple sequence alignment - TraesCS5A01G304800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G304800 chr5A 100.000 5446 0 0 1 5446 513849514 513844069 0.000000e+00 10057.0
1 TraesCS5A01G304800 chr5D 92.902 2564 123 26 2913 5446 407967865 407965331 0.000000e+00 3672.0
2 TraesCS5A01G304800 chr5D 90.142 1339 87 16 774 2090 407970156 407968841 0.000000e+00 1700.0
3 TraesCS5A01G304800 chr5D 95.922 613 23 1 3 615 325895689 325895079 0.000000e+00 992.0
4 TraesCS5A01G304800 chr5D 81.699 306 26 14 2098 2382 407968583 407968287 1.530000e-55 228.0
5 TraesCS5A01G304800 chr5D 90.071 141 11 3 2779 2917 97387179 97387318 4.330000e-41 180.0
6 TraesCS5A01G304800 chr5D 91.964 112 9 0 2392 2503 407968201 407968090 2.030000e-34 158.0
7 TraesCS5A01G304800 chr5D 94.186 86 5 0 628 713 407970266 407970181 1.230000e-26 132.0
8 TraesCS5A01G304800 chr5D 96.226 53 2 0 2747 2799 407967916 407967864 2.700000e-13 87.9
9 TraesCS5A01G304800 chr5D 90.769 65 5 1 2440 2503 407968301 407968237 9.720000e-13 86.1
10 TraesCS5A01G304800 chr5B 92.389 2562 136 31 2913 5446 489284098 489281568 0.000000e+00 3596.0
11 TraesCS5A01G304800 chr5B 90.108 1021 47 13 766 1771 489286109 489285128 0.000000e+00 1277.0
12 TraesCS5A01G304800 chr5B 89.683 252 24 2 781 1031 489303947 489303697 2.450000e-83 320.0
13 TraesCS5A01G304800 chr5B 90.511 137 12 1 2791 2927 107730903 107730768 4.330000e-41 180.0
14 TraesCS5A01G304800 chr5B 94.595 111 5 1 2273 2382 489284614 489284504 2.610000e-38 171.0
15 TraesCS5A01G304800 chr5B 93.750 112 7 0 2392 2503 489284417 489284306 9.380000e-38 169.0
16 TraesCS5A01G304800 chr1A 96.585 615 21 0 1 615 576367939 576367325 0.000000e+00 1020.0
17 TraesCS5A01G304800 chr3B 89.369 602 64 0 13 614 547445219 547444618 0.000000e+00 758.0
18 TraesCS5A01G304800 chr7B 95.122 123 6 0 2798 2920 3887414 3887536 1.550000e-45 195.0
19 TraesCS5A01G304800 chr2A 94.400 125 7 0 2798 2922 75637126 75637250 5.570000e-45 193.0
20 TraesCS5A01G304800 chr1B 95.082 122 6 0 2796 2917 645732055 645731934 5.570000e-45 193.0
21 TraesCS5A01G304800 chr6B 92.913 127 7 2 2798 2924 377824213 377824089 3.350000e-42 183.0
22 TraesCS5A01G304800 chr4D 91.111 135 12 0 2794 2928 5086935 5086801 3.350000e-42 183.0
23 TraesCS5A01G304800 chr2B 89.583 144 14 1 2797 2940 788660476 788660334 1.210000e-41 182.0
24 TraesCS5A01G304800 chr2B 90.441 136 12 1 2793 2928 95798035 95798169 1.560000e-40 178.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G304800 chr5A 513844069 513849514 5445 True 10057.000000 10057 100.000000 1 5446 1 chr5A.!!$R1 5445
1 TraesCS5A01G304800 chr5D 325895079 325895689 610 True 992.000000 992 95.922000 3 615 1 chr5D.!!$R1 612
2 TraesCS5A01G304800 chr5D 407965331 407970266 4935 True 866.285714 3672 91.126857 628 5446 7 chr5D.!!$R2 4818
3 TraesCS5A01G304800 chr5B 489281568 489286109 4541 True 1303.250000 3596 92.710500 766 5446 4 chr5B.!!$R3 4680
4 TraesCS5A01G304800 chr1A 576367325 576367939 614 True 1020.000000 1020 96.585000 1 615 1 chr1A.!!$R1 614
5 TraesCS5A01G304800 chr3B 547444618 547445219 601 True 758.000000 758 89.369000 13 614 1 chr3B.!!$R1 601

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
888 889 0.251832 ATCGGACGGCCAGGATAGAT 60.252 55.0 8.76 0.0 0.00 1.98 F
1976 1997 0.394216 TCCTTGGCATGGGATTGACG 60.394 55.0 18.35 0.0 0.00 4.35 F
2042 2068 0.392706 TGCAGTCGTGTTGGTCAGAT 59.607 50.0 0.00 0.0 0.00 2.90 F
2686 3112 0.442699 GTAAAGCTTGCGGAGGAACG 59.557 55.0 0.00 0.0 31.87 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1983 2004 0.180406 AAAGCAAGGTGGTCGAGTGT 59.820 50.0 0.00 0.0 0.00 3.55 R
2891 3317 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.0 44.66 2.12 R
2892 3318 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.0 5.23 0.0 44.66 1.89 R
4567 5016 0.669625 GCTACACTTTCGCCGGTCTT 60.670 55.0 1.90 0.0 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 120 3.000819 TGTTCGCGTCCCCCTCAT 61.001 61.111 5.77 0.00 0.00 2.90
231 232 0.390472 CGCTCCGGAGAAGAAAGCTT 60.390 55.000 35.69 0.00 36.96 3.74
368 369 4.396166 CCCTAAGTTTTTGATCGAGCACAT 59.604 41.667 1.08 0.00 0.00 3.21
525 526 1.463674 GGGCAATGATCGGAAACTGT 58.536 50.000 0.00 0.00 0.00 3.55
616 617 2.094100 TCTTTTCCATGGTTGCCCAA 57.906 45.000 12.58 0.00 46.04 4.12
617 618 1.969923 TCTTTTCCATGGTTGCCCAAG 59.030 47.619 12.58 6.35 46.04 3.61
618 619 1.969923 CTTTTCCATGGTTGCCCAAGA 59.030 47.619 12.58 0.00 46.04 3.02
619 620 1.631405 TTTCCATGGTTGCCCAAGAG 58.369 50.000 12.58 0.00 46.04 2.85
620 621 0.482446 TTCCATGGTTGCCCAAGAGT 59.518 50.000 12.58 0.00 46.04 3.24
621 622 0.482446 TCCATGGTTGCCCAAGAGTT 59.518 50.000 12.58 0.00 46.04 3.01
622 623 0.604578 CCATGGTTGCCCAAGAGTTG 59.395 55.000 2.57 0.00 46.04 3.16
708 709 6.554419 TCATGTTGCTATTTGAATTTCCTCG 58.446 36.000 0.00 0.00 0.00 4.63
709 710 6.374053 TCATGTTGCTATTTGAATTTCCTCGA 59.626 34.615 0.00 0.00 0.00 4.04
710 711 6.757897 TGTTGCTATTTGAATTTCCTCGAT 57.242 33.333 0.00 0.00 0.00 3.59
711 712 6.785191 TGTTGCTATTTGAATTTCCTCGATC 58.215 36.000 0.00 0.00 0.00 3.69
712 713 6.599244 TGTTGCTATTTGAATTTCCTCGATCT 59.401 34.615 0.00 0.00 0.00 2.75
713 714 6.609237 TGCTATTTGAATTTCCTCGATCTG 57.391 37.500 0.00 0.00 0.00 2.90
714 715 6.115446 TGCTATTTGAATTTCCTCGATCTGT 58.885 36.000 0.00 0.00 0.00 3.41
715 716 6.599244 TGCTATTTGAATTTCCTCGATCTGTT 59.401 34.615 0.00 0.00 0.00 3.16
716 717 6.909357 GCTATTTGAATTTCCTCGATCTGTTG 59.091 38.462 0.00 0.00 0.00 3.33
722 723 4.826274 TTTCCTCGATCTGTTGGATCTT 57.174 40.909 0.00 0.00 46.33 2.40
737 738 4.420206 TGGATCTTCCAAGAGAGAACTCA 58.580 43.478 4.64 0.00 45.00 3.41
738 739 5.028802 TGGATCTTCCAAGAGAGAACTCAT 58.971 41.667 4.64 0.00 45.00 2.90
746 747 6.644347 TCCAAGAGAGAACTCATATTTCACC 58.356 40.000 4.64 0.00 44.79 4.02
747 748 5.521735 CCAAGAGAGAACTCATATTTCACCG 59.478 44.000 4.64 0.00 44.79 4.94
748 749 5.269505 AGAGAGAACTCATATTTCACCGG 57.730 43.478 0.00 0.00 44.79 5.28
749 750 4.956700 AGAGAGAACTCATATTTCACCGGA 59.043 41.667 9.46 0.00 44.79 5.14
750 751 5.600484 AGAGAGAACTCATATTTCACCGGAT 59.400 40.000 9.46 0.00 44.79 4.18
751 752 6.098982 AGAGAGAACTCATATTTCACCGGATT 59.901 38.462 9.46 0.00 44.79 3.01
752 753 6.284459 AGAGAACTCATATTTCACCGGATTC 58.716 40.000 9.46 0.00 0.00 2.52
753 754 5.050490 AGAACTCATATTTCACCGGATTCG 58.950 41.667 9.46 0.00 0.00 3.34
754 755 4.665833 ACTCATATTTCACCGGATTCGA 57.334 40.909 9.46 0.00 39.00 3.71
755 756 4.369182 ACTCATATTTCACCGGATTCGAC 58.631 43.478 9.46 0.00 39.00 4.20
756 757 4.099573 ACTCATATTTCACCGGATTCGACT 59.900 41.667 9.46 0.00 39.00 4.18
757 758 5.301045 ACTCATATTTCACCGGATTCGACTA 59.699 40.000 9.46 0.00 39.00 2.59
758 759 6.015350 ACTCATATTTCACCGGATTCGACTAT 60.015 38.462 9.46 0.00 39.00 2.12
759 760 7.176165 ACTCATATTTCACCGGATTCGACTATA 59.824 37.037 9.46 0.68 39.00 1.31
760 761 8.063200 TCATATTTCACCGGATTCGACTATAT 57.937 34.615 9.46 2.88 39.00 0.86
761 762 9.181061 TCATATTTCACCGGATTCGACTATATA 57.819 33.333 9.46 0.00 39.00 0.86
762 763 9.967346 CATATTTCACCGGATTCGACTATATAT 57.033 33.333 9.46 0.00 39.00 0.86
820 821 3.323758 ATCGCCCGCCACAGCTAAA 62.324 57.895 0.00 0.00 36.60 1.85
860 861 0.317160 TCCGCAGTTAGTCCACACAG 59.683 55.000 0.00 0.00 0.00 3.66
872 873 1.745653 TCCACACAGCACTCTAGATCG 59.254 52.381 0.00 0.00 0.00 3.69
888 889 0.251832 ATCGGACGGCCAGGATAGAT 60.252 55.000 8.76 0.00 0.00 1.98
958 970 2.046285 CCCACTCGCCATCAAACCC 61.046 63.158 0.00 0.00 0.00 4.11
1124 1136 2.102357 TGTCGAATCGAGAGCCGC 59.898 61.111 5.25 0.00 36.23 6.53
1125 1137 3.019545 GTCGAATCGAGAGCCGCG 61.020 66.667 5.25 0.00 36.23 6.46
1126 1138 3.506096 TCGAATCGAGAGCCGCGT 61.506 61.111 4.92 0.00 38.37 6.01
1127 1139 3.019545 CGAATCGAGAGCCGCGTC 61.020 66.667 4.92 0.00 38.37 5.19
1128 1140 3.019545 GAATCGAGAGCCGCGTCG 61.020 66.667 10.23 10.23 38.37 5.12
1129 1141 3.736482 GAATCGAGAGCCGCGTCGT 62.736 63.158 15.14 0.00 37.46 4.34
1462 1474 1.135083 CCATCGTCTACAAGTTCGCCT 60.135 52.381 0.00 0.00 0.00 5.52
1572 1584 0.937304 CCATCGCCGTCAAGGTATTG 59.063 55.000 0.00 0.00 43.70 1.90
1574 1586 2.482316 CCATCGCCGTCAAGGTATTGTA 60.482 50.000 0.00 0.00 43.70 2.41
1577 1589 3.450578 TCGCCGTCAAGGTATTGTAATC 58.549 45.455 0.00 0.00 43.70 1.75
1578 1590 2.217847 CGCCGTCAAGGTATTGTAATCG 59.782 50.000 0.00 0.00 43.70 3.34
1585 1603 4.038763 TCAAGGTATTGTAATCGCGATCCT 59.961 41.667 23.92 18.94 37.68 3.24
1617 1635 8.579006 TGTTTGCTACTCATTTCTCATCAAATT 58.421 29.630 0.00 0.00 0.00 1.82
1627 1645 9.056005 TCATTTCTCATCAAATTAGGAATACCG 57.944 33.333 0.00 0.00 41.83 4.02
1646 1664 2.616001 CCGGTCGAAACAAAATCCCCTA 60.616 50.000 0.00 0.00 0.00 3.53
1660 1678 7.340487 ACAAAATCCCCTAGATGTTTCAGAATC 59.660 37.037 0.00 0.00 34.56 2.52
1716 1734 2.654749 TTCGATGTGAATGCGAGAGT 57.345 45.000 0.00 0.00 35.31 3.24
1762 1780 4.079901 AGAGGAAAGGTTGCATCATGATCT 60.080 41.667 4.86 0.00 0.00 2.75
1771 1789 5.505324 GGTTGCATCATGATCTAGCTTTGTC 60.505 44.000 15.25 0.00 0.00 3.18
1826 1844 3.428045 GCAAGATTAACCATTTCGCAGCT 60.428 43.478 0.00 0.00 0.00 4.24
1876 1894 5.105228 CCATATTGCAGAACAACCTTCCATT 60.105 40.000 0.00 0.00 42.27 3.16
1895 1915 8.442660 TTCCATTTAAAACAGGGTATTCCATT 57.557 30.769 0.00 0.00 38.24 3.16
1896 1916 7.846066 TCCATTTAAAACAGGGTATTCCATTG 58.154 34.615 0.00 0.00 38.24 2.82
1903 1923 3.117016 ACAGGGTATTCCATTGCCATCAT 60.117 43.478 0.00 0.00 38.24 2.45
1908 1928 7.562454 CAGGGTATTCCATTGCCATCATAATAT 59.438 37.037 0.00 0.00 38.24 1.28
1909 1929 8.124430 AGGGTATTCCATTGCCATCATAATATT 58.876 33.333 0.00 0.00 38.24 1.28
1912 1932 6.667558 TTCCATTGCCATCATAATATTGCA 57.332 33.333 0.00 0.00 0.00 4.08
1917 1937 8.255206 CCATTGCCATCATAATATTGCAACTAT 58.745 33.333 0.00 0.00 40.99 2.12
1970 1991 0.846427 ACCTTCTCCTTGGCATGGGA 60.846 55.000 18.35 13.37 0.00 4.37
1976 1997 0.394216 TCCTTGGCATGGGATTGACG 60.394 55.000 18.35 0.00 0.00 4.35
1979 2000 2.440065 GGCATGGGATTGACGCCA 60.440 61.111 0.00 0.00 42.50 5.69
1980 2001 2.774799 GGCATGGGATTGACGCCAC 61.775 63.158 0.00 0.00 42.50 5.01
1981 2002 3.101209 CATGGGATTGACGCCACG 58.899 61.111 0.00 0.00 0.00 4.94
1982 2003 2.824041 ATGGGATTGACGCCACGC 60.824 61.111 0.00 0.00 0.00 5.34
1983 2004 3.620419 ATGGGATTGACGCCACGCA 62.620 57.895 0.00 0.00 0.00 5.24
1984 2005 3.799755 GGGATTGACGCCACGCAC 61.800 66.667 0.00 0.00 0.00 5.34
1985 2006 3.047280 GGATTGACGCCACGCACA 61.047 61.111 0.00 0.00 0.00 4.57
1986 2007 2.173382 GATTGACGCCACGCACAC 59.827 61.111 0.00 0.00 0.00 3.82
1997 2018 2.029073 CGCACACTCGACCACCTT 59.971 61.111 0.00 0.00 0.00 3.50
2004 2025 1.002468 CACTCGACCACCTTGCTTTTG 60.002 52.381 0.00 0.00 0.00 2.44
2011 2032 3.760684 GACCACCTTGCTTTTGAGATCAT 59.239 43.478 0.00 0.00 0.00 2.45
2014 2035 4.142447 CCACCTTGCTTTTGAGATCATCTG 60.142 45.833 0.00 0.00 0.00 2.90
2016 2037 5.645067 CACCTTGCTTTTGAGATCATCTGTA 59.355 40.000 0.00 0.00 0.00 2.74
2019 2040 7.044181 CCTTGCTTTTGAGATCATCTGTAGTA 58.956 38.462 0.00 0.00 0.00 1.82
2036 2062 3.896648 AGTATTTTGCAGTCGTGTTGG 57.103 42.857 0.00 0.00 0.00 3.77
2038 2064 2.774439 ATTTTGCAGTCGTGTTGGTC 57.226 45.000 0.00 0.00 0.00 4.02
2040 2066 1.013596 TTTGCAGTCGTGTTGGTCAG 58.986 50.000 0.00 0.00 0.00 3.51
2042 2068 0.392706 TGCAGTCGTGTTGGTCAGAT 59.607 50.000 0.00 0.00 0.00 2.90
2051 2077 5.873164 GTCGTGTTGGTCAGATATTTTAGGT 59.127 40.000 0.00 0.00 0.00 3.08
2052 2078 5.872617 TCGTGTTGGTCAGATATTTTAGGTG 59.127 40.000 0.00 0.00 0.00 4.00
2055 2081 4.164843 TGGTCAGATATTTTAGGTGCCC 57.835 45.455 0.00 0.00 0.00 5.36
2056 2082 3.525609 TGGTCAGATATTTTAGGTGCCCA 59.474 43.478 0.00 0.00 0.00 5.36
2066 2092 6.715347 ATTTTAGGTGCCCATAGAAATGAC 57.285 37.500 0.00 0.00 34.84 3.06
2069 2095 2.238646 AGGTGCCCATAGAAATGACGAA 59.761 45.455 0.00 0.00 34.84 3.85
2094 2370 8.511604 AGTTGTGCTTTGTAATGATATAGCTT 57.488 30.769 0.00 0.00 0.00 3.74
2115 2391 5.677091 GCTTGTTCACTCATTGTCACAACTT 60.677 40.000 0.00 0.00 30.74 2.66
2116 2392 6.458206 GCTTGTTCACTCATTGTCACAACTTA 60.458 38.462 0.00 0.00 30.74 2.24
2121 2399 7.566760 TCACTCATTGTCACAACTTACAATT 57.433 32.000 0.00 0.00 42.22 2.32
2123 2401 8.773645 TCACTCATTGTCACAACTTACAATTAG 58.226 33.333 0.00 0.00 42.22 1.73
2125 2403 9.120538 ACTCATTGTCACAACTTACAATTAGTT 57.879 29.630 0.00 0.00 43.13 2.24
2145 2423 1.211703 TGGCTTGACAACTGAACTGGA 59.788 47.619 0.00 0.00 0.00 3.86
2158 2436 4.471386 ACTGAACTGGAACTGGCTGTATAT 59.529 41.667 0.00 0.00 0.00 0.86
2159 2437 5.045578 ACTGAACTGGAACTGGCTGTATATT 60.046 40.000 0.00 0.00 0.00 1.28
2160 2438 6.156256 ACTGAACTGGAACTGGCTGTATATTA 59.844 38.462 0.00 0.00 0.00 0.98
2161 2439 7.136822 TGAACTGGAACTGGCTGTATATTAT 57.863 36.000 0.00 0.00 0.00 1.28
2163 2441 8.148351 TGAACTGGAACTGGCTGTATATTATAC 58.852 37.037 6.85 6.85 0.00 1.47
2164 2442 6.688578 ACTGGAACTGGCTGTATATTATACG 58.311 40.000 8.85 5.66 0.00 3.06
2165 2443 6.267014 ACTGGAACTGGCTGTATATTATACGT 59.733 38.462 8.85 0.00 0.00 3.57
2212 2490 6.833933 GGATTTGGGGTATCTGTTGTTTCTAT 59.166 38.462 0.00 0.00 0.00 1.98
2230 2508 6.441093 TTCTATGTGCTCATGGAAATGTTC 57.559 37.500 20.86 0.00 44.44 3.18
2241 2519 5.651576 TCATGGAAATGTTCGGATTTCATGA 59.348 36.000 8.34 8.34 42.04 3.07
2262 2540 8.155510 TCATGAATCTGATTCCTCTCATAAAGG 58.844 37.037 23.62 7.24 38.50 3.11
2265 2543 7.989741 TGAATCTGATTCCTCTCATAAAGGTTC 59.010 37.037 23.62 0.00 38.50 3.62
2266 2544 6.874278 TCTGATTCCTCTCATAAAGGTTCA 57.126 37.500 0.00 0.00 35.29 3.18
2267 2545 6.882656 TCTGATTCCTCTCATAAAGGTTCAG 58.117 40.000 13.74 13.74 41.45 3.02
2271 2607 9.163894 TGATTCCTCTCATAAAGGTTCAGATAT 57.836 33.333 0.00 0.00 35.29 1.63
2286 2622 7.497249 AGGTTCAGATATTAACAACTGAGATGC 59.503 37.037 0.00 0.00 39.86 3.91
2296 2632 5.752892 ACAACTGAGATGCATGATTCATC 57.247 39.130 2.46 0.00 40.34 2.92
2301 2637 4.648651 TGAGATGCATGATTCATCCGAAT 58.351 39.130 2.46 0.00 44.75 3.34
2379 2722 4.260212 CGAACGAGTAATTAACCATGCTGG 60.260 45.833 0.00 1.16 45.02 4.85
2382 2725 5.057149 ACGAGTAATTAACCATGCTGGATC 58.943 41.667 8.91 0.00 40.96 3.36
2383 2726 5.056480 CGAGTAATTAACCATGCTGGATCA 58.944 41.667 8.91 0.00 40.96 2.92
2384 2727 5.178252 CGAGTAATTAACCATGCTGGATCAG 59.822 44.000 8.91 0.00 40.96 2.90
2385 2728 5.380043 AGTAATTAACCATGCTGGATCAGG 58.620 41.667 8.91 0.00 40.96 3.86
2386 2729 4.524802 AATTAACCATGCTGGATCAGGA 57.475 40.909 8.91 0.00 40.96 3.86
2387 2730 4.736611 ATTAACCATGCTGGATCAGGAT 57.263 40.909 8.91 0.00 43.06 3.24
2389 2732 2.359981 ACCATGCTGGATCAGGATTG 57.640 50.000 8.91 0.00 39.42 2.67
2419 2839 1.065126 GGTAATGGAAGCAGCAGAGGT 60.065 52.381 0.00 0.00 0.00 3.85
2421 2841 1.542492 AATGGAAGCAGCAGAGGTTG 58.458 50.000 0.00 0.00 0.00 3.77
2437 2857 4.972733 TGCATTGCGGGCACACCT 62.973 61.111 3.84 0.00 36.11 4.00
2442 2862 1.000283 CATTGCGGGCACACCTTTTAA 60.000 47.619 0.00 0.00 36.97 1.52
2493 2913 6.375830 AAGTAAGGCCTTTAGTAGCTTTCT 57.624 37.500 26.08 0.00 30.27 2.52
2494 2914 5.735766 AGTAAGGCCTTTAGTAGCTTTCTG 58.264 41.667 26.08 0.00 30.27 3.02
2495 2915 4.642466 AAGGCCTTTAGTAGCTTTCTGT 57.358 40.909 13.78 0.00 0.00 3.41
2496 2916 4.642466 AGGCCTTTAGTAGCTTTCTGTT 57.358 40.909 0.00 0.00 0.00 3.16
2497 2917 4.580868 AGGCCTTTAGTAGCTTTCTGTTC 58.419 43.478 0.00 0.00 0.00 3.18
2498 2918 3.690139 GGCCTTTAGTAGCTTTCTGTTCC 59.310 47.826 0.00 0.00 0.00 3.62
2499 2919 4.565861 GGCCTTTAGTAGCTTTCTGTTCCT 60.566 45.833 0.00 0.00 0.00 3.36
2500 2920 5.004448 GCCTTTAGTAGCTTTCTGTTCCTT 58.996 41.667 0.00 0.00 0.00 3.36
2501 2921 5.473846 GCCTTTAGTAGCTTTCTGTTCCTTT 59.526 40.000 0.00 0.00 0.00 3.11
2502 2922 6.016192 GCCTTTAGTAGCTTTCTGTTCCTTTT 60.016 38.462 0.00 0.00 0.00 2.27
2503 2923 7.470147 GCCTTTAGTAGCTTTCTGTTCCTTTTT 60.470 37.037 0.00 0.00 0.00 1.94
2552 2975 1.672881 GAACAGCGGCATAAGCATTCT 59.327 47.619 1.45 0.00 44.61 2.40
2579 3002 4.268644 CAGGCTGTCAGTTCAACATATACG 59.731 45.833 6.28 0.00 0.00 3.06
2581 3004 5.050490 GGCTGTCAGTTCAACATATACGAT 58.950 41.667 0.93 0.00 0.00 3.73
2605 3029 9.952188 GATACAATTTTAATAGGGAAAGTGCTC 57.048 33.333 0.00 0.00 35.06 4.26
2631 3055 1.202290 CCGGCTCCATTGCATAACAAC 60.202 52.381 0.00 0.00 42.27 3.32
2635 3059 3.429085 GCTCCATTGCATAACAACGAAG 58.571 45.455 0.00 0.00 42.27 3.79
2638 3062 2.176369 CATTGCATAACAACGAAGCCG 58.824 47.619 0.00 0.00 42.27 5.52
2668 3092 8.918202 TGTCTGATACAACTTATTTGGAAAGT 57.082 30.769 0.00 0.00 39.84 2.66
2685 3111 1.809684 AGTAAAGCTTGCGGAGGAAC 58.190 50.000 0.00 0.00 31.87 3.62
2686 3112 0.442699 GTAAAGCTTGCGGAGGAACG 59.557 55.000 0.00 0.00 31.87 3.95
2696 3122 2.434774 GAGGAACGGCAAAGGGGT 59.565 61.111 0.00 0.00 0.00 4.95
2705 3131 3.369921 CAAAGGGGTTGCCTCAGC 58.630 61.111 0.00 0.00 40.48 4.26
2717 3143 2.083774 TGCCTCAGCAGGAAATTAACG 58.916 47.619 0.00 0.00 46.52 3.18
2718 3144 1.401905 GCCTCAGCAGGAAATTAACGG 59.598 52.381 0.00 0.00 43.65 4.44
2719 3145 1.401905 CCTCAGCAGGAAATTAACGGC 59.598 52.381 0.00 0.00 43.65 5.68
2720 3146 2.083774 CTCAGCAGGAAATTAACGGCA 58.916 47.619 7.06 0.00 0.00 5.69
2721 3147 2.083774 TCAGCAGGAAATTAACGGCAG 58.916 47.619 7.06 0.00 0.00 4.85
2722 3148 1.133025 CAGCAGGAAATTAACGGCAGG 59.867 52.381 7.06 0.00 0.00 4.85
2723 3149 0.455815 GCAGGAAATTAACGGCAGGG 59.544 55.000 0.00 0.00 0.00 4.45
2724 3150 1.953311 GCAGGAAATTAACGGCAGGGA 60.953 52.381 0.00 0.00 0.00 4.20
2725 3151 2.442413 CAGGAAATTAACGGCAGGGAA 58.558 47.619 0.00 0.00 0.00 3.97
2726 3152 2.823154 CAGGAAATTAACGGCAGGGAAA 59.177 45.455 0.00 0.00 0.00 3.13
2727 3153 2.823747 AGGAAATTAACGGCAGGGAAAC 59.176 45.455 0.00 0.00 0.00 2.78
2728 3154 2.559231 GGAAATTAACGGCAGGGAAACA 59.441 45.455 0.00 0.00 0.00 2.83
2729 3155 3.194755 GGAAATTAACGGCAGGGAAACAT 59.805 43.478 0.00 0.00 0.00 2.71
2730 3156 4.399934 GGAAATTAACGGCAGGGAAACATA 59.600 41.667 0.00 0.00 0.00 2.29
2731 3157 5.068591 GGAAATTAACGGCAGGGAAACATAT 59.931 40.000 0.00 0.00 0.00 1.78
2732 3158 6.263617 GGAAATTAACGGCAGGGAAACATATA 59.736 38.462 0.00 0.00 0.00 0.86
2733 3159 6.628919 AATTAACGGCAGGGAAACATATAC 57.371 37.500 0.00 0.00 0.00 1.47
2734 3160 3.926058 AACGGCAGGGAAACATATACT 57.074 42.857 0.00 0.00 0.00 2.12
2735 3161 6.482898 TTAACGGCAGGGAAACATATACTA 57.517 37.500 0.00 0.00 0.00 1.82
2736 3162 5.562298 AACGGCAGGGAAACATATACTAT 57.438 39.130 0.00 0.00 0.00 2.12
2737 3163 4.894784 ACGGCAGGGAAACATATACTATG 58.105 43.478 0.00 0.00 0.00 2.23
2738 3164 3.684788 CGGCAGGGAAACATATACTATGC 59.315 47.826 0.00 0.00 0.00 3.14
2739 3165 4.651778 GGCAGGGAAACATATACTATGCA 58.348 43.478 0.00 0.00 32.92 3.96
2740 3166 5.070001 GGCAGGGAAACATATACTATGCAA 58.930 41.667 0.00 0.00 32.92 4.08
2741 3167 5.711976 GGCAGGGAAACATATACTATGCAAT 59.288 40.000 0.00 0.00 32.92 3.56
2742 3168 6.349611 GGCAGGGAAACATATACTATGCAATG 60.350 42.308 0.00 0.00 32.92 2.82
2743 3169 6.430925 GCAGGGAAACATATACTATGCAATGA 59.569 38.462 0.00 0.00 0.00 2.57
2744 3170 7.121759 GCAGGGAAACATATACTATGCAATGAT 59.878 37.037 0.00 0.00 0.00 2.45
2745 3171 9.671279 CAGGGAAACATATACTATGCAATGATA 57.329 33.333 0.00 0.00 0.00 2.15
2746 3172 9.672673 AGGGAAACATATACTATGCAATGATAC 57.327 33.333 0.00 0.00 0.00 2.24
2747 3173 8.893727 GGGAAACATATACTATGCAATGATACC 58.106 37.037 0.00 0.00 0.00 2.73
2748 3174 9.672673 GGAAACATATACTATGCAATGATACCT 57.327 33.333 0.00 0.00 0.00 3.08
2792 3218 9.422681 AGATAACTCTAATAAGGCTGTCAGTTA 57.577 33.333 0.93 0.00 31.50 2.24
2797 3223 8.322091 ACTCTAATAAGGCTGTCAGTTAAACAT 58.678 33.333 0.93 0.00 0.00 2.71
2798 3224 9.817809 CTCTAATAAGGCTGTCAGTTAAACATA 57.182 33.333 0.93 0.00 0.00 2.29
2799 3225 9.595823 TCTAATAAGGCTGTCAGTTAAACATAC 57.404 33.333 0.93 0.00 0.00 2.39
2800 3226 9.601217 CTAATAAGGCTGTCAGTTAAACATACT 57.399 33.333 0.93 0.00 0.00 2.12
2801 3227 8.494016 AATAAGGCTGTCAGTTAAACATACTC 57.506 34.615 0.93 0.00 0.00 2.59
2802 3228 4.833390 AGGCTGTCAGTTAAACATACTCC 58.167 43.478 0.93 0.00 0.00 3.85
2803 3229 3.939592 GGCTGTCAGTTAAACATACTCCC 59.060 47.826 0.93 0.00 0.00 4.30
2804 3230 4.323562 GGCTGTCAGTTAAACATACTCCCT 60.324 45.833 0.93 0.00 0.00 4.20
2805 3231 4.870991 GCTGTCAGTTAAACATACTCCCTC 59.129 45.833 0.93 0.00 0.00 4.30
2806 3232 5.416271 TGTCAGTTAAACATACTCCCTCC 57.584 43.478 0.00 0.00 0.00 4.30
2807 3233 4.081862 TGTCAGTTAAACATACTCCCTCCG 60.082 45.833 0.00 0.00 0.00 4.63
2808 3234 4.081807 GTCAGTTAAACATACTCCCTCCGT 60.082 45.833 0.00 0.00 0.00 4.69
2809 3235 4.529377 TCAGTTAAACATACTCCCTCCGTT 59.471 41.667 0.00 0.00 0.00 4.44
2810 3236 4.868734 CAGTTAAACATACTCCCTCCGTTC 59.131 45.833 0.00 0.00 0.00 3.95
2811 3237 2.667473 AAACATACTCCCTCCGTTCG 57.333 50.000 0.00 0.00 0.00 3.95
2812 3238 1.843368 AACATACTCCCTCCGTTCGA 58.157 50.000 0.00 0.00 0.00 3.71
2813 3239 1.843368 ACATACTCCCTCCGTTCGAA 58.157 50.000 0.00 0.00 0.00 3.71
2814 3240 2.173519 ACATACTCCCTCCGTTCGAAA 58.826 47.619 0.00 0.00 0.00 3.46
2815 3241 2.564062 ACATACTCCCTCCGTTCGAAAA 59.436 45.455 0.00 0.00 0.00 2.29
2816 3242 3.197116 ACATACTCCCTCCGTTCGAAAAT 59.803 43.478 0.00 0.00 0.00 1.82
2817 3243 4.403432 ACATACTCCCTCCGTTCGAAAATA 59.597 41.667 0.00 0.00 0.00 1.40
2818 3244 3.242549 ACTCCCTCCGTTCGAAAATAC 57.757 47.619 0.00 0.00 0.00 1.89
2819 3245 2.830321 ACTCCCTCCGTTCGAAAATACT 59.170 45.455 0.00 0.00 0.00 2.12
2820 3246 3.260128 ACTCCCTCCGTTCGAAAATACTT 59.740 43.478 0.00 0.00 0.00 2.24
2821 3247 3.592059 TCCCTCCGTTCGAAAATACTTG 58.408 45.455 0.00 0.00 0.00 3.16
2822 3248 3.007182 TCCCTCCGTTCGAAAATACTTGT 59.993 43.478 0.00 0.00 0.00 3.16
2823 3249 3.370061 CCCTCCGTTCGAAAATACTTGTC 59.630 47.826 0.00 0.00 0.00 3.18
2824 3250 3.060363 CCTCCGTTCGAAAATACTTGTCG 59.940 47.826 0.00 0.00 36.12 4.35
2825 3251 2.988493 TCCGTTCGAAAATACTTGTCGG 59.012 45.455 0.00 5.52 35.51 4.79
2826 3252 2.988493 CCGTTCGAAAATACTTGTCGGA 59.012 45.455 11.33 0.00 38.03 4.55
2827 3253 3.060363 CCGTTCGAAAATACTTGTCGGAG 59.940 47.826 11.33 0.00 38.03 4.63
2828 3254 3.916172 CGTTCGAAAATACTTGTCGGAGA 59.084 43.478 0.00 0.00 35.51 3.71
2829 3255 4.383649 CGTTCGAAAATACTTGTCGGAGAA 59.616 41.667 0.00 0.00 39.69 2.87
2830 3256 5.107760 CGTTCGAAAATACTTGTCGGAGAAA 60.108 40.000 0.00 0.00 39.69 2.52
2831 3257 6.400727 CGTTCGAAAATACTTGTCGGAGAAAT 60.401 38.462 0.00 0.00 39.69 2.17
2832 3258 6.403333 TCGAAAATACTTGTCGGAGAAATG 57.597 37.500 0.05 0.00 39.69 2.32
2833 3259 5.350365 TCGAAAATACTTGTCGGAGAAATGG 59.650 40.000 0.05 0.00 39.69 3.16
2834 3260 5.350365 CGAAAATACTTGTCGGAGAAATGGA 59.650 40.000 0.00 0.00 39.69 3.41
2835 3261 6.037172 CGAAAATACTTGTCGGAGAAATGGAT 59.963 38.462 0.00 0.00 39.69 3.41
2836 3262 7.223971 CGAAAATACTTGTCGGAGAAATGGATA 59.776 37.037 0.00 0.00 39.69 2.59
2837 3263 8.801882 AAAATACTTGTCGGAGAAATGGATAA 57.198 30.769 0.00 0.00 39.69 1.75
2838 3264 8.801882 AAATACTTGTCGGAGAAATGGATAAA 57.198 30.769 0.00 0.00 39.69 1.40
2839 3265 8.801882 AATACTTGTCGGAGAAATGGATAAAA 57.198 30.769 0.00 0.00 39.69 1.52
2840 3266 8.801882 ATACTTGTCGGAGAAATGGATAAAAA 57.198 30.769 0.00 0.00 39.69 1.94
2841 3267 7.703058 ACTTGTCGGAGAAATGGATAAAAAT 57.297 32.000 0.00 0.00 39.69 1.82
2842 3268 7.538575 ACTTGTCGGAGAAATGGATAAAAATG 58.461 34.615 0.00 0.00 39.69 2.32
2843 3269 6.449635 TGTCGGAGAAATGGATAAAAATGG 57.550 37.500 0.00 0.00 39.69 3.16
2844 3270 6.184068 TGTCGGAGAAATGGATAAAAATGGA 58.816 36.000 0.00 0.00 39.69 3.41
2845 3271 6.833416 TGTCGGAGAAATGGATAAAAATGGAT 59.167 34.615 0.00 0.00 39.69 3.41
2846 3272 7.013274 TGTCGGAGAAATGGATAAAAATGGATC 59.987 37.037 0.00 0.00 39.69 3.36
2847 3273 7.229506 GTCGGAGAAATGGATAAAAATGGATCT 59.770 37.037 0.00 0.00 39.69 2.75
2848 3274 8.436778 TCGGAGAAATGGATAAAAATGGATCTA 58.563 33.333 0.00 0.00 0.00 1.98
2849 3275 9.236006 CGGAGAAATGGATAAAAATGGATCTAT 57.764 33.333 0.00 0.00 0.00 1.98
2888 3314 8.718158 ACATCTAGATACATCCATTTCTCTGA 57.282 34.615 4.54 0.00 0.00 3.27
2889 3315 8.584157 ACATCTAGATACATCCATTTCTCTGAC 58.416 37.037 4.54 0.00 0.00 3.51
2890 3316 8.583296 CATCTAGATACATCCATTTCTCTGACA 58.417 37.037 4.54 0.00 0.00 3.58
2891 3317 8.539117 TCTAGATACATCCATTTCTCTGACAA 57.461 34.615 0.00 0.00 0.00 3.18
2892 3318 8.637099 TCTAGATACATCCATTTCTCTGACAAG 58.363 37.037 0.00 0.00 0.00 3.16
2893 3319 7.192852 AGATACATCCATTTCTCTGACAAGT 57.807 36.000 0.00 0.00 0.00 3.16
2894 3320 8.311395 AGATACATCCATTTCTCTGACAAGTA 57.689 34.615 0.00 0.00 0.00 2.24
2895 3321 8.932610 AGATACATCCATTTCTCTGACAAGTAT 58.067 33.333 0.00 0.00 0.00 2.12
2896 3322 9.553064 GATACATCCATTTCTCTGACAAGTATT 57.447 33.333 0.00 0.00 0.00 1.89
2897 3323 9.911788 ATACATCCATTTCTCTGACAAGTATTT 57.088 29.630 0.00 0.00 0.00 1.40
2898 3324 8.273780 ACATCCATTTCTCTGACAAGTATTTC 57.726 34.615 0.00 0.00 0.00 2.17
2899 3325 7.337942 ACATCCATTTCTCTGACAAGTATTTCC 59.662 37.037 0.00 0.00 0.00 3.13
2900 3326 5.874810 TCCATTTCTCTGACAAGTATTTCCG 59.125 40.000 0.00 0.00 0.00 4.30
2901 3327 5.065218 CCATTTCTCTGACAAGTATTTCCGG 59.935 44.000 0.00 0.00 0.00 5.14
2902 3328 5.477607 TTTCTCTGACAAGTATTTCCGGA 57.522 39.130 0.00 0.00 0.00 5.14
2903 3329 4.451629 TCTCTGACAAGTATTTCCGGAC 57.548 45.455 1.83 0.00 0.00 4.79
2904 3330 3.119602 TCTCTGACAAGTATTTCCGGACG 60.120 47.826 1.83 0.00 0.00 4.79
2905 3331 2.094390 TCTGACAAGTATTTCCGGACGG 60.094 50.000 1.83 3.96 0.00 4.79
2906 3332 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
2907 3333 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
2908 3334 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2909 3335 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2910 3336 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2911 3337 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2989 3415 9.830975 ATTTTATGGTATTTTTAACATCCAGCC 57.169 29.630 0.00 0.00 0.00 4.85
3038 3464 0.033920 ACGCAGCACTGTTCTGATGA 59.966 50.000 11.65 0.00 33.54 2.92
3057 3483 2.000447 GACGATAGCACAACAAGACCC 59.000 52.381 0.00 0.00 42.67 4.46
3134 3560 6.308282 CGTCTGGACACTGAAGTAAAGATTAC 59.692 42.308 1.63 0.00 0.00 1.89
3135 3561 7.152645 GTCTGGACACTGAAGTAAAGATTACA 58.847 38.462 3.37 0.00 0.00 2.41
3156 3582 1.271001 GGGGCTGTTACTTACGTTGGT 60.271 52.381 0.00 0.00 0.00 3.67
3206 3632 4.780021 AGTGACTCAGGTTGATCAAGGTAT 59.220 41.667 8.80 0.00 0.00 2.73
3232 3658 8.948631 TGTTGCTAAAGAAATTATCGATCTCT 57.051 30.769 0.00 0.00 0.00 3.10
3314 3741 4.423732 ACATTTCACAACTTGCAACAGAC 58.576 39.130 0.00 0.00 0.00 3.51
3374 3801 3.242739 ACTTCACATTTGTTGCACGAGAC 60.243 43.478 0.00 0.00 0.00 3.36
3377 3804 1.526887 ACATTTGTTGCACGAGACTCG 59.473 47.619 22.97 22.97 46.93 4.18
3380 3807 0.874175 TTGTTGCACGAGACTCGGTG 60.874 55.000 27.39 21.78 45.59 4.94
3916 4344 1.619654 TCCATGGTTGCTTCTTGGTG 58.380 50.000 12.58 0.00 33.00 4.17
4009 4447 8.713708 TCAGAAACTATAAATTGGTTTTCCCA 57.286 30.769 0.00 0.00 43.27 4.37
4026 4464 7.123547 GGTTTTCCCATAATGTGAGGAATAACA 59.876 37.037 16.06 0.00 37.16 2.41
4066 4504 2.443255 ACAGGTGGATGTTGGAGACTTT 59.557 45.455 0.00 0.00 0.00 2.66
4150 4588 1.983907 CGAAGTCGTCGCTCATGTG 59.016 57.895 0.00 0.00 44.14 3.21
4189 4627 4.201628 CGAAAAAGCGAGGTAATCTCACAG 60.202 45.833 0.00 0.00 42.55 3.66
4243 4683 7.523052 GCAGCAGCTATACTCTAGTCTTTGTAT 60.523 40.741 0.00 0.00 37.91 2.29
4246 4686 8.234546 GCAGCTATACTCTAGTCTTTGTATCTC 58.765 40.741 0.00 0.00 0.00 2.75
4254 4694 7.971168 ACTCTAGTCTTTGTATCTCGTTGAATG 59.029 37.037 0.00 0.00 0.00 2.67
4283 4728 4.769345 TCACCATACCACATTGCTGATA 57.231 40.909 0.00 0.00 0.00 2.15
4525 4970 2.473576 ACTAGTGGGAGATGTACCCC 57.526 55.000 0.00 0.00 46.21 4.95
4648 5100 8.855804 AGTAGTGGGATATATAATAACCCCAG 57.144 38.462 7.66 0.00 43.75 4.45
4707 5159 9.618890 GGCACTGTCCATTGATTATATATGTAT 57.381 33.333 0.00 0.00 0.00 2.29
4758 5210 5.717119 AACAAAGATAGAGGCCATTAGGT 57.283 39.130 5.01 0.00 37.19 3.08
4761 5213 4.965200 AAGATAGAGGCCATTAGGTCAC 57.035 45.455 5.01 0.00 43.99 3.67
4778 5230 0.683973 CACTGCCTTCAGGTCAGAGT 59.316 55.000 18.57 4.47 44.54 3.24
4862 5314 2.221169 TGAAAGGTTGTAGCTGCAGTG 58.779 47.619 16.64 0.00 0.00 3.66
4865 5317 1.051812 AGGTTGTAGCTGCAGTGAGT 58.948 50.000 16.64 0.31 0.00 3.41
4866 5318 2.248248 AGGTTGTAGCTGCAGTGAGTA 58.752 47.619 16.64 0.00 0.00 2.59
4867 5319 2.632996 AGGTTGTAGCTGCAGTGAGTAA 59.367 45.455 16.64 2.17 0.00 2.24
4868 5320 3.071023 AGGTTGTAGCTGCAGTGAGTAAA 59.929 43.478 16.64 0.21 0.00 2.01
4869 5321 4.003648 GGTTGTAGCTGCAGTGAGTAAAT 58.996 43.478 16.64 0.00 0.00 1.40
4870 5322 5.046591 AGGTTGTAGCTGCAGTGAGTAAATA 60.047 40.000 16.64 0.00 0.00 1.40
4926 5378 5.939883 TCATGTGATGGTTCTTTTAGACTGG 59.060 40.000 0.00 0.00 0.00 4.00
4984 5436 6.458888 GCCAAAAGATTTGATCTACTAGTGCC 60.459 42.308 5.39 0.00 39.08 5.01
4992 5448 5.521906 TGATCTACTAGTGCCAGTGATTC 57.478 43.478 5.39 0.00 0.00 2.52
5023 5479 5.758784 AGCATGTCTGAATCATCATGTACAG 59.241 40.000 20.65 0.00 39.54 2.74
5027 5483 5.756833 TGTCTGAATCATCATGTACAGATGC 59.243 40.000 21.12 10.59 41.98 3.91
5042 5498 2.624838 CAGATGCCACTTTCACCTTTGT 59.375 45.455 0.00 0.00 0.00 2.83
5103 5571 6.205270 TGCGGAATCATGTACTACTACGATAA 59.795 38.462 0.00 0.00 0.00 1.75
5104 5572 7.094506 TGCGGAATCATGTACTACTACGATAAT 60.095 37.037 0.00 0.00 0.00 1.28
5145 5615 9.726438 ACTTATCTGCTCAAGTTACAAAATACT 57.274 29.630 0.00 0.00 30.89 2.12
5194 5671 1.189752 TTGCCTGCTCCTCTAGACAG 58.810 55.000 1.91 1.91 32.41 3.51
5209 5686 4.824537 TCTAGACAGTAGCTAAGATGCAGG 59.175 45.833 0.00 0.00 34.99 4.85
5244 5722 3.244215 ACATTCGGTATCATGGCTACTGG 60.244 47.826 12.45 4.57 0.00 4.00
5249 5727 2.434658 TATCATGGCTACTGGCGGCG 62.435 60.000 0.51 0.51 42.94 6.46
5266 5744 0.651042 GCGACTACGACGATGACGAG 60.651 60.000 0.00 0.00 41.06 4.18
5347 5825 4.736896 GTCTCCACCCGGCGTGAC 62.737 72.222 20.63 11.32 46.20 3.67
5410 5888 4.373116 TCCTTGCAGACGCGGTCC 62.373 66.667 12.47 0.00 42.97 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.696884 CTCAAGGAAGGGGAGGCTATC 59.303 57.143 0.00 0.00 0.00 2.08
119 120 0.408309 TCCCGTCTCCTCTTCCTTCA 59.592 55.000 0.00 0.00 0.00 3.02
231 232 2.124193 CGGCCATGGATGCAAGGA 60.124 61.111 18.40 0.00 0.00 3.36
368 369 0.033781 CAAGGTGGAAACCCGTACGA 59.966 55.000 18.76 0.00 0.00 3.43
397 398 4.329545 GTCAGGGACGCTTGGGCA 62.330 66.667 0.00 0.00 38.60 5.36
643 644 3.989056 TGTTCCCCAAAAAGACTCCTTT 58.011 40.909 0.00 0.00 44.00 3.11
715 716 4.420206 TGAGTTCTCTCTTGGAAGATCCA 58.580 43.478 0.00 0.00 41.66 3.41
716 717 5.612725 ATGAGTTCTCTCTTGGAAGATCC 57.387 43.478 1.53 0.00 40.98 3.36
722 723 6.628175 CGGTGAAATATGAGTTCTCTCTTGGA 60.628 42.308 1.53 0.00 40.98 3.53
734 735 4.621991 AGTCGAATCCGGTGAAATATGAG 58.378 43.478 0.00 0.00 36.24 2.90
761 762 9.378504 TGCCTTTCATGGTGGAATAATTTATAT 57.621 29.630 0.00 0.00 0.00 0.86
762 763 8.637986 GTGCCTTTCATGGTGGAATAATTTATA 58.362 33.333 0.00 0.00 0.00 0.98
763 764 7.418942 GGTGCCTTTCATGGTGGAATAATTTAT 60.419 37.037 0.00 0.00 0.00 1.40
764 765 6.127196 GGTGCCTTTCATGGTGGAATAATTTA 60.127 38.462 0.00 0.00 0.00 1.40
860 861 1.008309 GCCGTCCGATCTAGAGTGC 60.008 63.158 0.00 0.00 0.00 4.40
872 873 1.878656 CGGATCTATCCTGGCCGTCC 61.879 65.000 7.39 0.00 44.93 4.79
958 970 1.146930 CATGTGGGAGGATGACGGG 59.853 63.158 0.00 0.00 0.00 5.28
1098 1110 2.499685 GATTCGACACGGGGGAGG 59.500 66.667 0.00 0.00 0.00 4.30
1099 1111 2.104331 CGATTCGACACGGGGGAG 59.896 66.667 0.00 0.00 0.00 4.30
1104 1116 1.586564 GGCTCTCGATTCGACACGG 60.587 63.158 4.29 0.00 0.00 4.94
1107 1119 2.102357 GCGGCTCTCGATTCGACA 59.898 61.111 4.29 0.00 42.43 4.35
1462 1474 3.515286 GCGGAGGATGTCGTCGGA 61.515 66.667 12.52 0.00 34.40 4.55
1585 1603 4.287067 AGAAATGAGTAGCAAACAGAGGGA 59.713 41.667 0.00 0.00 0.00 4.20
1617 1635 4.533919 TTTGTTTCGACCGGTATTCCTA 57.466 40.909 7.34 0.00 0.00 2.94
1623 1641 2.425539 GGGATTTTGTTTCGACCGGTA 58.574 47.619 7.34 0.00 0.00 4.02
1627 1645 3.946606 TCTAGGGGATTTTGTTTCGACC 58.053 45.455 0.00 0.00 0.00 4.79
1646 1664 5.495926 ACAGGACAGATTCTGAAACATCT 57.504 39.130 20.33 5.33 35.18 2.90
1660 1678 5.641209 CCTGAAGTTCTATGAAACAGGACAG 59.359 44.000 16.56 0.00 43.91 3.51
1826 1844 6.479001 GTGTTGTTCACTTTCTGCTAGAGTTA 59.521 38.462 0.00 0.00 43.13 2.24
1855 1873 7.531857 TTAAATGGAAGGTTGTTCTGCAATA 57.468 32.000 0.00 0.00 39.55 1.90
1876 1894 5.087323 TGGCAATGGAATACCCTGTTTTAA 58.913 37.500 0.00 0.00 35.38 1.52
1895 1915 7.887495 TGGTATAGTTGCAATATTATGATGGCA 59.113 33.333 0.59 0.00 0.00 4.92
1896 1916 8.279970 TGGTATAGTTGCAATATTATGATGGC 57.720 34.615 0.59 0.00 0.00 4.40
1908 1928 9.674068 TGTTTTGTATATCTGGTATAGTTGCAA 57.326 29.630 0.00 0.00 0.00 4.08
1909 1929 9.845740 ATGTTTTGTATATCTGGTATAGTTGCA 57.154 29.630 0.00 0.00 0.00 4.08
1970 1991 2.280797 AGTGTGCGTGGCGTCAAT 60.281 55.556 0.00 0.00 0.00 2.57
1976 1997 4.961511 TGGTCGAGTGTGCGTGGC 62.962 66.667 0.00 0.00 0.00 5.01
1979 2000 2.792947 AAGGTGGTCGAGTGTGCGT 61.793 57.895 0.00 0.00 0.00 5.24
1980 2001 2.029073 AAGGTGGTCGAGTGTGCG 59.971 61.111 0.00 0.00 0.00 5.34
1981 2002 2.607892 GCAAGGTGGTCGAGTGTGC 61.608 63.158 0.00 0.00 0.00 4.57
1982 2003 0.532862 AAGCAAGGTGGTCGAGTGTG 60.533 55.000 0.00 0.00 0.00 3.82
1983 2004 0.180406 AAAGCAAGGTGGTCGAGTGT 59.820 50.000 0.00 0.00 0.00 3.55
1984 2005 1.002468 CAAAAGCAAGGTGGTCGAGTG 60.002 52.381 0.00 0.00 0.00 3.51
1985 2006 1.134220 TCAAAAGCAAGGTGGTCGAGT 60.134 47.619 0.00 0.00 0.00 4.18
1986 2007 1.532868 CTCAAAAGCAAGGTGGTCGAG 59.467 52.381 0.00 0.00 0.00 4.04
1989 2010 3.149196 TGATCTCAAAAGCAAGGTGGTC 58.851 45.455 0.00 0.00 0.00 4.02
1997 2018 9.453572 AAAATACTACAGATGATCTCAAAAGCA 57.546 29.630 0.00 0.00 0.00 3.91
2004 2025 7.096271 CGACTGCAAAATACTACAGATGATCTC 60.096 40.741 0.00 0.00 34.25 2.75
2011 2032 4.878439 ACACGACTGCAAAATACTACAGA 58.122 39.130 0.00 0.00 34.25 3.41
2014 2035 4.212636 ACCAACACGACTGCAAAATACTAC 59.787 41.667 0.00 0.00 0.00 2.73
2016 2037 3.211045 ACCAACACGACTGCAAAATACT 58.789 40.909 0.00 0.00 0.00 2.12
2019 2040 2.020720 TGACCAACACGACTGCAAAAT 58.979 42.857 0.00 0.00 0.00 1.82
2051 2077 3.627395 ACTTCGTCATTTCTATGGGCA 57.373 42.857 0.00 0.00 32.40 5.36
2052 2078 3.689649 ACAACTTCGTCATTTCTATGGGC 59.310 43.478 0.00 0.00 32.40 5.36
2055 2081 5.536554 AGCACAACTTCGTCATTTCTATG 57.463 39.130 0.00 0.00 0.00 2.23
2056 2082 6.017109 ACAAAGCACAACTTCGTCATTTCTAT 60.017 34.615 0.00 0.00 37.75 1.98
2066 2092 7.584123 GCTATATCATTACAAAGCACAACTTCG 59.416 37.037 0.00 0.00 37.75 3.79
2069 2095 8.400947 CAAGCTATATCATTACAAAGCACAACT 58.599 33.333 0.00 0.00 32.42 3.16
2075 2101 8.616076 AGTGAACAAGCTATATCATTACAAAGC 58.384 33.333 0.00 0.00 0.00 3.51
2084 2110 7.278646 GTGACAATGAGTGAACAAGCTATATCA 59.721 37.037 0.00 0.00 0.00 2.15
2094 2370 5.877564 TGTAAGTTGTGACAATGAGTGAACA 59.122 36.000 0.00 0.00 0.00 3.18
2123 2401 2.223572 CCAGTTCAGTTGTCAAGCCAAC 60.224 50.000 0.00 0.00 44.00 3.77
2125 2403 1.211703 TCCAGTTCAGTTGTCAAGCCA 59.788 47.619 0.00 0.00 0.00 4.75
2130 2408 2.917933 CCAGTTCCAGTTCAGTTGTCA 58.082 47.619 0.00 0.00 0.00 3.58
2159 2437 9.355215 GGCGTCTACTTAGTATACTTACGTATA 57.645 37.037 11.40 1.24 37.50 1.47
2160 2438 7.872993 TGGCGTCTACTTAGTATACTTACGTAT 59.127 37.037 11.40 0.00 39.56 3.06
2161 2439 7.207383 TGGCGTCTACTTAGTATACTTACGTA 58.793 38.462 11.40 9.07 33.32 3.57
2163 2441 6.347240 CCTGGCGTCTACTTAGTATACTTACG 60.347 46.154 11.40 12.01 33.32 3.18
2164 2442 6.708054 TCCTGGCGTCTACTTAGTATACTTAC 59.292 42.308 11.40 0.30 0.00 2.34
2165 2443 6.830912 TCCTGGCGTCTACTTAGTATACTTA 58.169 40.000 11.40 0.33 0.00 2.24
2171 2449 4.098960 CCAAATCCTGGCGTCTACTTAGTA 59.901 45.833 0.00 0.00 38.76 1.82
2173 2451 3.458189 CCAAATCCTGGCGTCTACTTAG 58.542 50.000 0.00 0.00 38.76 2.18
2174 2452 2.169769 CCCAAATCCTGGCGTCTACTTA 59.830 50.000 0.00 0.00 44.90 2.24
2175 2453 1.065418 CCCAAATCCTGGCGTCTACTT 60.065 52.381 0.00 0.00 44.90 2.24
2176 2454 0.541863 CCCAAATCCTGGCGTCTACT 59.458 55.000 0.00 0.00 44.90 2.57
2177 2455 0.463833 CCCCAAATCCTGGCGTCTAC 60.464 60.000 0.00 0.00 44.90 2.59
2178 2456 0.912487 ACCCCAAATCCTGGCGTCTA 60.912 55.000 0.00 0.00 44.90 2.59
2179 2457 0.912487 TACCCCAAATCCTGGCGTCT 60.912 55.000 0.00 0.00 44.90 4.18
2180 2458 0.182775 ATACCCCAAATCCTGGCGTC 59.817 55.000 0.00 0.00 44.90 5.19
2181 2459 0.182775 GATACCCCAAATCCTGGCGT 59.817 55.000 0.00 0.00 44.90 5.68
2182 2460 0.474184 AGATACCCCAAATCCTGGCG 59.526 55.000 0.00 0.00 44.90 5.69
2183 2461 1.215423 ACAGATACCCCAAATCCTGGC 59.785 52.381 0.00 0.00 44.90 4.85
2184 2462 3.290710 CAACAGATACCCCAAATCCTGG 58.709 50.000 0.00 0.00 45.97 4.45
2197 2475 6.539826 CCATGAGCACATAGAAACAACAGATA 59.460 38.462 0.00 0.00 35.09 1.98
2212 2490 1.811965 CCGAACATTTCCATGAGCACA 59.188 47.619 0.00 0.00 34.11 4.57
2227 2505 6.261826 AGGAATCAGATTCATGAAATCCGAAC 59.738 38.462 22.23 2.98 44.20 3.95
2230 2508 5.996513 AGAGGAATCAGATTCATGAAATCCG 59.003 40.000 22.23 3.87 44.20 4.18
2241 2519 7.865820 TGAACCTTTATGAGAGGAATCAGATT 58.134 34.615 0.00 0.00 37.72 2.40
2262 2540 8.201554 TGCATCTCAGTTGTTAATATCTGAAC 57.798 34.615 12.37 5.46 36.67 3.18
2265 2543 8.374327 TCATGCATCTCAGTTGTTAATATCTG 57.626 34.615 0.00 4.39 0.00 2.90
2266 2544 9.570468 AATCATGCATCTCAGTTGTTAATATCT 57.430 29.630 0.00 0.00 0.00 1.98
2267 2545 9.823098 GAATCATGCATCTCAGTTGTTAATATC 57.177 33.333 0.00 0.00 0.00 1.63
2271 2607 7.201758 GGATGAATCATGCATCTCAGTTGTTAA 60.202 37.037 9.92 0.00 41.39 2.01
2276 2612 3.813724 CGGATGAATCATGCATCTCAGTT 59.186 43.478 14.85 0.00 41.39 3.16
2286 2622 7.430992 AGTGAATACATTCGGATGAATCATG 57.569 36.000 11.64 0.00 42.94 3.07
2296 2632 6.792326 TGTAGTGAGTAGTGAATACATTCGG 58.208 40.000 0.00 0.00 39.62 4.30
2301 2637 7.116736 TCTGGATGTAGTGAGTAGTGAATACA 58.883 38.462 0.00 0.00 36.79 2.29
2379 2722 2.096496 CCAAACTGACGCAATCCTGATC 59.904 50.000 0.00 0.00 0.00 2.92
2382 2725 1.238439 ACCAAACTGACGCAATCCTG 58.762 50.000 0.00 0.00 0.00 3.86
2383 2726 2.851263 TACCAAACTGACGCAATCCT 57.149 45.000 0.00 0.00 0.00 3.24
2384 2727 3.427503 CCATTACCAAACTGACGCAATCC 60.428 47.826 0.00 0.00 0.00 3.01
2385 2728 3.438781 TCCATTACCAAACTGACGCAATC 59.561 43.478 0.00 0.00 0.00 2.67
2386 2729 3.417101 TCCATTACCAAACTGACGCAAT 58.583 40.909 0.00 0.00 0.00 3.56
2387 2730 2.852449 TCCATTACCAAACTGACGCAA 58.148 42.857 0.00 0.00 0.00 4.85
2389 2732 2.414161 GCTTCCATTACCAAACTGACGC 60.414 50.000 0.00 0.00 0.00 5.19
2419 2839 3.988525 GGTGTGCCCGCAATGCAA 61.989 61.111 5.91 0.00 41.06 4.08
2421 2841 2.713927 AAAAGGTGTGCCCGCAATGC 62.714 55.000 0.00 0.00 38.74 3.56
2437 2857 9.378551 CAGTATGTACCATTGAGCTAGTTAAAA 57.621 33.333 0.00 0.00 0.00 1.52
2502 2922 8.630037 AGAAAAGGAGAAAGCGATCTTTAAAAA 58.370 29.630 0.00 0.00 42.24 1.94
2503 2923 8.166422 AGAAAAGGAGAAAGCGATCTTTAAAA 57.834 30.769 0.00 0.00 42.24 1.52
2504 2924 7.745620 AGAAAAGGAGAAAGCGATCTTTAAA 57.254 32.000 0.00 0.00 42.24 1.52
2505 2925 7.745620 AAGAAAAGGAGAAAGCGATCTTTAA 57.254 32.000 0.00 0.00 42.24 1.52
2506 2926 7.745620 AAAGAAAAGGAGAAAGCGATCTTTA 57.254 32.000 0.00 0.00 42.24 1.85
2507 2927 6.641169 AAAGAAAAGGAGAAAGCGATCTTT 57.359 33.333 0.00 0.00 44.67 2.52
2508 2928 6.263168 TCAAAAGAAAAGGAGAAAGCGATCTT 59.737 34.615 0.00 0.00 0.00 2.40
2509 2929 5.765182 TCAAAAGAAAAGGAGAAAGCGATCT 59.235 36.000 0.00 0.00 0.00 2.75
2510 2930 6.002062 TCAAAAGAAAAGGAGAAAGCGATC 57.998 37.500 0.00 0.00 0.00 3.69
2511 2931 6.183360 TGTTCAAAAGAAAAGGAGAAAGCGAT 60.183 34.615 0.00 0.00 0.00 4.58
2512 2932 5.124776 TGTTCAAAAGAAAAGGAGAAAGCGA 59.875 36.000 0.00 0.00 0.00 4.93
2513 2933 5.339990 TGTTCAAAAGAAAAGGAGAAAGCG 58.660 37.500 0.00 0.00 0.00 4.68
2514 2934 5.233050 GCTGTTCAAAAGAAAAGGAGAAAGC 59.767 40.000 0.00 0.00 0.00 3.51
2515 2935 5.456822 CGCTGTTCAAAAGAAAAGGAGAAAG 59.543 40.000 0.00 0.00 0.00 2.62
2516 2936 5.339990 CGCTGTTCAAAAGAAAAGGAGAAA 58.660 37.500 0.00 0.00 0.00 2.52
2517 2937 4.202010 CCGCTGTTCAAAAGAAAAGGAGAA 60.202 41.667 0.00 0.00 0.00 2.87
2518 2938 3.315191 CCGCTGTTCAAAAGAAAAGGAGA 59.685 43.478 0.00 0.00 0.00 3.71
2519 2939 3.632189 CCGCTGTTCAAAAGAAAAGGAG 58.368 45.455 0.00 0.00 0.00 3.69
2520 2940 2.223711 GCCGCTGTTCAAAAGAAAAGGA 60.224 45.455 0.00 0.00 0.00 3.36
2521 2941 2.127251 GCCGCTGTTCAAAAGAAAAGG 58.873 47.619 0.00 0.00 0.00 3.11
2526 2946 2.095263 GCTTATGCCGCTGTTCAAAAGA 60.095 45.455 0.00 0.00 0.00 2.52
2552 2975 2.297701 GTTGAACTGACAGCCTGGAAA 58.702 47.619 1.25 0.00 0.00 3.13
2579 3002 9.952188 GAGCACTTTCCCTATTAAAATTGTATC 57.048 33.333 0.00 0.00 0.00 2.24
2581 3004 7.891183 TGGAGCACTTTCCCTATTAAAATTGTA 59.109 33.333 0.00 0.00 36.35 2.41
2590 3013 1.064389 GGCTGGAGCACTTTCCCTATT 60.064 52.381 0.20 0.00 44.36 1.73
2591 3014 0.548510 GGCTGGAGCACTTTCCCTAT 59.451 55.000 0.20 0.00 44.36 2.57
2592 3015 1.562672 GGGCTGGAGCACTTTCCCTA 61.563 60.000 0.20 0.00 42.27 3.53
2631 3055 4.546570 TGTATCAGACATATTCGGCTTCG 58.453 43.478 0.00 0.00 31.20 3.79
2635 3059 7.891183 ATAAGTTGTATCAGACATATTCGGC 57.109 36.000 0.00 0.00 38.07 5.54
2664 3088 2.552743 GTTCCTCCGCAAGCTTTACTTT 59.447 45.455 0.00 0.00 36.04 2.66
2667 3091 0.442699 CGTTCCTCCGCAAGCTTTAC 59.557 55.000 0.00 0.00 0.00 2.01
2668 3092 0.672401 CCGTTCCTCCGCAAGCTTTA 60.672 55.000 0.00 0.00 0.00 1.85
2675 3101 2.668212 CTTTGCCGTTCCTCCGCA 60.668 61.111 0.00 0.00 0.00 5.69
2702 3128 1.133025 CCTGCCGTTAATTTCCTGCTG 59.867 52.381 0.00 0.00 0.00 4.41
2703 3129 1.463674 CCTGCCGTTAATTTCCTGCT 58.536 50.000 0.00 0.00 0.00 4.24
2704 3130 0.455815 CCCTGCCGTTAATTTCCTGC 59.544 55.000 0.00 0.00 0.00 4.85
2705 3131 2.122783 TCCCTGCCGTTAATTTCCTG 57.877 50.000 0.00 0.00 0.00 3.86
2706 3132 2.823747 GTTTCCCTGCCGTTAATTTCCT 59.176 45.455 0.00 0.00 0.00 3.36
2707 3133 2.559231 TGTTTCCCTGCCGTTAATTTCC 59.441 45.455 0.00 0.00 0.00 3.13
2708 3134 3.926821 TGTTTCCCTGCCGTTAATTTC 57.073 42.857 0.00 0.00 0.00 2.17
2709 3135 6.831868 AGTATATGTTTCCCTGCCGTTAATTT 59.168 34.615 0.00 0.00 0.00 1.82
2710 3136 6.362248 AGTATATGTTTCCCTGCCGTTAATT 58.638 36.000 0.00 0.00 0.00 1.40
2711 3137 5.937111 AGTATATGTTTCCCTGCCGTTAAT 58.063 37.500 0.00 0.00 0.00 1.40
2712 3138 5.362105 AGTATATGTTTCCCTGCCGTTAA 57.638 39.130 0.00 0.00 0.00 2.01
2713 3139 6.460781 CATAGTATATGTTTCCCTGCCGTTA 58.539 40.000 0.00 0.00 0.00 3.18
2714 3140 3.926058 AGTATATGTTTCCCTGCCGTT 57.074 42.857 0.00 0.00 0.00 4.44
2715 3141 4.802918 GCATAGTATATGTTTCCCTGCCGT 60.803 45.833 0.00 0.00 0.00 5.68
2716 3142 3.684788 GCATAGTATATGTTTCCCTGCCG 59.315 47.826 0.00 0.00 0.00 5.69
2717 3143 4.651778 TGCATAGTATATGTTTCCCTGCC 58.348 43.478 0.00 0.00 0.00 4.85
2718 3144 6.430925 TCATTGCATAGTATATGTTTCCCTGC 59.569 38.462 0.00 0.00 0.00 4.85
2719 3145 7.984422 TCATTGCATAGTATATGTTTCCCTG 57.016 36.000 0.00 0.00 0.00 4.45
2720 3146 9.672673 GTATCATTGCATAGTATATGTTTCCCT 57.327 33.333 0.00 0.00 0.00 4.20
2721 3147 8.893727 GGTATCATTGCATAGTATATGTTTCCC 58.106 37.037 0.00 0.00 0.00 3.97
2722 3148 9.672673 AGGTATCATTGCATAGTATATGTTTCC 57.327 33.333 0.00 0.00 0.00 3.13
2730 3156 9.051259 AGGTAATCAGGTATCATTGCATAGTAT 57.949 33.333 0.00 0.00 0.00 2.12
2731 3157 8.435931 AGGTAATCAGGTATCATTGCATAGTA 57.564 34.615 0.00 0.00 0.00 1.82
2732 3158 7.321717 AGGTAATCAGGTATCATTGCATAGT 57.678 36.000 0.00 0.00 0.00 2.12
2733 3159 9.322773 CATAGGTAATCAGGTATCATTGCATAG 57.677 37.037 0.00 0.00 0.00 2.23
2734 3160 8.267183 CCATAGGTAATCAGGTATCATTGCATA 58.733 37.037 0.00 0.00 0.00 3.14
2735 3161 7.037370 TCCATAGGTAATCAGGTATCATTGCAT 60.037 37.037 0.00 0.00 0.00 3.96
2736 3162 6.272090 TCCATAGGTAATCAGGTATCATTGCA 59.728 38.462 0.00 0.00 0.00 4.08
2737 3163 6.711277 TCCATAGGTAATCAGGTATCATTGC 58.289 40.000 0.00 0.00 0.00 3.56
2738 3164 8.542926 TCATCCATAGGTAATCAGGTATCATTG 58.457 37.037 0.00 0.00 0.00 2.82
2739 3165 8.543774 GTCATCCATAGGTAATCAGGTATCATT 58.456 37.037 0.00 0.00 0.00 2.57
2740 3166 7.679881 TGTCATCCATAGGTAATCAGGTATCAT 59.320 37.037 0.00 0.00 0.00 2.45
2741 3167 7.016296 TGTCATCCATAGGTAATCAGGTATCA 58.984 38.462 0.00 0.00 0.00 2.15
2742 3168 7.397476 TCTGTCATCCATAGGTAATCAGGTATC 59.603 40.741 0.00 0.00 0.00 2.24
2743 3169 7.248976 TCTGTCATCCATAGGTAATCAGGTAT 58.751 38.462 0.00 0.00 0.00 2.73
2744 3170 6.620429 TCTGTCATCCATAGGTAATCAGGTA 58.380 40.000 0.00 0.00 0.00 3.08
2745 3171 5.467738 TCTGTCATCCATAGGTAATCAGGT 58.532 41.667 0.00 0.00 0.00 4.00
2746 3172 6.617782 ATCTGTCATCCATAGGTAATCAGG 57.382 41.667 0.00 0.00 0.00 3.86
2747 3173 8.811017 AGTTATCTGTCATCCATAGGTAATCAG 58.189 37.037 0.00 0.00 0.00 2.90
2748 3174 8.727100 AGTTATCTGTCATCCATAGGTAATCA 57.273 34.615 0.00 0.00 0.00 2.57
2776 3202 7.553044 GGAGTATGTTTAACTGACAGCCTTATT 59.447 37.037 1.25 0.00 0.00 1.40
2792 3218 2.173519 TCGAACGGAGGGAGTATGTTT 58.826 47.619 0.00 0.00 0.00 2.83
2797 3223 4.019174 AGTATTTTCGAACGGAGGGAGTA 58.981 43.478 0.00 0.00 0.00 2.59
2798 3224 2.830321 AGTATTTTCGAACGGAGGGAGT 59.170 45.455 0.00 0.00 0.00 3.85
2799 3225 3.521947 AGTATTTTCGAACGGAGGGAG 57.478 47.619 0.00 0.00 0.00 4.30
2800 3226 3.007182 ACAAGTATTTTCGAACGGAGGGA 59.993 43.478 0.00 0.00 0.00 4.20
2801 3227 3.332034 ACAAGTATTTTCGAACGGAGGG 58.668 45.455 0.00 0.00 0.00 4.30
2802 3228 3.060363 CGACAAGTATTTTCGAACGGAGG 59.940 47.826 0.00 0.00 34.62 4.30
2803 3229 3.060363 CCGACAAGTATTTTCGAACGGAG 59.940 47.826 11.33 0.00 40.16 4.63
2804 3230 2.988493 CCGACAAGTATTTTCGAACGGA 59.012 45.455 11.33 0.00 40.16 4.69
2805 3231 2.988493 TCCGACAAGTATTTTCGAACGG 59.012 45.455 10.71 10.71 39.30 4.44
2806 3232 3.916172 TCTCCGACAAGTATTTTCGAACG 59.084 43.478 0.00 0.00 34.62 3.95
2807 3233 5.834239 TTCTCCGACAAGTATTTTCGAAC 57.166 39.130 0.00 0.00 34.62 3.95
2808 3234 6.128391 CCATTTCTCCGACAAGTATTTTCGAA 60.128 38.462 0.00 0.00 34.62 3.71
2809 3235 5.350365 CCATTTCTCCGACAAGTATTTTCGA 59.650 40.000 0.00 0.00 34.62 3.71
2810 3236 5.350365 TCCATTTCTCCGACAAGTATTTTCG 59.650 40.000 0.00 0.00 0.00 3.46
2811 3237 6.737254 TCCATTTCTCCGACAAGTATTTTC 57.263 37.500 0.00 0.00 0.00 2.29
2812 3238 8.801882 TTATCCATTTCTCCGACAAGTATTTT 57.198 30.769 0.00 0.00 0.00 1.82
2813 3239 8.801882 TTTATCCATTTCTCCGACAAGTATTT 57.198 30.769 0.00 0.00 0.00 1.40
2814 3240 8.801882 TTTTATCCATTTCTCCGACAAGTATT 57.198 30.769 0.00 0.00 0.00 1.89
2815 3241 8.801882 TTTTTATCCATTTCTCCGACAAGTAT 57.198 30.769 0.00 0.00 0.00 2.12
2816 3242 8.673711 CATTTTTATCCATTTCTCCGACAAGTA 58.326 33.333 0.00 0.00 0.00 2.24
2817 3243 7.362920 CCATTTTTATCCATTTCTCCGACAAGT 60.363 37.037 0.00 0.00 0.00 3.16
2818 3244 6.974622 CCATTTTTATCCATTTCTCCGACAAG 59.025 38.462 0.00 0.00 0.00 3.16
2819 3245 6.661377 TCCATTTTTATCCATTTCTCCGACAA 59.339 34.615 0.00 0.00 0.00 3.18
2820 3246 6.184068 TCCATTTTTATCCATTTCTCCGACA 58.816 36.000 0.00 0.00 0.00 4.35
2821 3247 6.693315 TCCATTTTTATCCATTTCTCCGAC 57.307 37.500 0.00 0.00 0.00 4.79
2822 3248 7.290061 AGATCCATTTTTATCCATTTCTCCGA 58.710 34.615 0.00 0.00 0.00 4.55
2823 3249 7.516198 AGATCCATTTTTATCCATTTCTCCG 57.484 36.000 0.00 0.00 0.00 4.63
2862 3288 9.813826 TCAGAGAAATGGATGTATCTAGATGTA 57.186 33.333 15.79 4.44 0.00 2.29
2863 3289 8.584157 GTCAGAGAAATGGATGTATCTAGATGT 58.416 37.037 15.79 1.25 0.00 3.06
2864 3290 8.583296 TGTCAGAGAAATGGATGTATCTAGATG 58.417 37.037 15.79 0.00 0.00 2.90
2865 3291 8.718158 TGTCAGAGAAATGGATGTATCTAGAT 57.282 34.615 10.73 10.73 0.00 1.98
2866 3292 8.539117 TTGTCAGAGAAATGGATGTATCTAGA 57.461 34.615 0.00 0.00 0.00 2.43
2867 3293 8.420222 ACTTGTCAGAGAAATGGATGTATCTAG 58.580 37.037 0.00 0.00 0.00 2.43
2868 3294 8.311395 ACTTGTCAGAGAAATGGATGTATCTA 57.689 34.615 0.00 0.00 0.00 1.98
2869 3295 7.192852 ACTTGTCAGAGAAATGGATGTATCT 57.807 36.000 0.00 0.00 0.00 1.98
2870 3296 9.553064 AATACTTGTCAGAGAAATGGATGTATC 57.447 33.333 0.00 0.00 0.00 2.24
2871 3297 9.911788 AAATACTTGTCAGAGAAATGGATGTAT 57.088 29.630 0.00 0.00 0.00 2.29
2872 3298 9.383519 GAAATACTTGTCAGAGAAATGGATGTA 57.616 33.333 0.00 0.00 0.00 2.29
2873 3299 7.337942 GGAAATACTTGTCAGAGAAATGGATGT 59.662 37.037 0.00 0.00 0.00 3.06
2874 3300 7.466455 CGGAAATACTTGTCAGAGAAATGGATG 60.466 40.741 0.00 0.00 0.00 3.51
2875 3301 6.540189 CGGAAATACTTGTCAGAGAAATGGAT 59.460 38.462 0.00 0.00 0.00 3.41
2876 3302 5.874810 CGGAAATACTTGTCAGAGAAATGGA 59.125 40.000 0.00 0.00 0.00 3.41
2877 3303 5.065218 CCGGAAATACTTGTCAGAGAAATGG 59.935 44.000 0.00 0.00 0.00 3.16
2878 3304 5.874810 TCCGGAAATACTTGTCAGAGAAATG 59.125 40.000 0.00 0.00 0.00 2.32
2879 3305 5.875359 GTCCGGAAATACTTGTCAGAGAAAT 59.125 40.000 5.23 0.00 0.00 2.17
2880 3306 5.235516 GTCCGGAAATACTTGTCAGAGAAA 58.764 41.667 5.23 0.00 0.00 2.52
2881 3307 4.617530 CGTCCGGAAATACTTGTCAGAGAA 60.618 45.833 5.23 0.00 0.00 2.87
2882 3308 3.119602 CGTCCGGAAATACTTGTCAGAGA 60.120 47.826 5.23 0.00 0.00 3.10
2883 3309 3.179830 CGTCCGGAAATACTTGTCAGAG 58.820 50.000 5.23 0.00 0.00 3.35
2884 3310 2.094390 CCGTCCGGAAATACTTGTCAGA 60.094 50.000 5.23 0.00 37.50 3.27
2885 3311 2.094390 TCCGTCCGGAAATACTTGTCAG 60.094 50.000 5.23 0.00 42.05 3.51
2886 3312 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
2887 3313 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2888 3314 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2889 3315 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2890 3316 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2891 3317 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2892 3318 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2893 3319 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2894 3320 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2895 3321 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
2896 3322 0.846015 TATACTCCCTCCGTCCGGAA 59.154 55.000 5.23 0.00 44.66 4.30
2897 3323 1.070604 ATATACTCCCTCCGTCCGGA 58.929 55.000 0.00 0.00 42.90 5.14
2898 3324 2.026449 AGTATATACTCCCTCCGTCCGG 60.026 54.545 9.71 0.00 0.00 5.14
2899 3325 3.347077 AGTATATACTCCCTCCGTCCG 57.653 52.381 9.71 0.00 0.00 4.79
2900 3326 7.341805 TGTTATAGTATATACTCCCTCCGTCC 58.658 42.308 18.68 0.71 37.73 4.79
2901 3327 8.798859 TTGTTATAGTATATACTCCCTCCGTC 57.201 38.462 18.68 4.38 37.73 4.79
2902 3328 9.186837 CATTGTTATAGTATATACTCCCTCCGT 57.813 37.037 18.68 0.27 37.73 4.69
2903 3329 9.404848 TCATTGTTATAGTATATACTCCCTCCG 57.595 37.037 18.68 3.34 37.73 4.63
2973 3399 4.956075 AGATTCCGGCTGGATGTTAAAAAT 59.044 37.500 16.96 2.50 45.91 1.82
2987 3413 3.363341 TTTGTCAACAAAGATTCCGGC 57.637 42.857 0.00 0.00 40.55 6.13
3038 3464 1.338769 GGGGTCTTGTTGTGCTATCGT 60.339 52.381 0.00 0.00 0.00 3.73
3057 3483 6.430451 CACAGAAGCAGTAACTAACAAAAGG 58.570 40.000 0.00 0.00 0.00 3.11
3206 3632 9.383519 AGAGATCGATAATTTCTTTAGCAACAA 57.616 29.630 0.00 0.00 0.00 2.83
3242 3668 8.164058 TCATACATGACAGTTGTTCAAAATCA 57.836 30.769 0.00 0.00 0.00 2.57
3282 3708 5.998454 AGTTGTGAAATGTCAGACAAGAG 57.002 39.130 7.50 0.00 33.27 2.85
3314 3741 1.016130 GGTCTGACTGCACATCACCG 61.016 60.000 7.85 0.00 0.00 4.94
3832 4259 8.346300 TGAAGATACGAGCTTAATTACTCAGAG 58.654 37.037 0.00 0.00 32.98 3.35
3916 4344 9.039870 CATCTTCAGTGATAACTTGAGGTAATC 57.960 37.037 0.00 0.00 0.00 1.75
3931 4359 7.124147 TCCAGTCATACATAACATCTTCAGTGA 59.876 37.037 0.00 0.00 0.00 3.41
4066 4504 6.427853 ACAAGACACATGATTTGAATCGAAGA 59.572 34.615 0.00 0.00 45.75 2.87
4150 4588 4.821589 CGGAGCTCGGGCCTTGTC 62.822 72.222 2.00 0.00 39.73 3.18
4189 4627 1.529244 AGTTTGTCCTGGGCAGCAC 60.529 57.895 0.00 2.72 0.00 4.40
4202 4640 3.243643 GCTGCTGCAGTTAAAACAGTTTG 59.756 43.478 28.50 1.59 39.41 2.93
4254 4694 2.722094 TGTGGTATGGTGAATGGAAGC 58.278 47.619 0.00 0.00 0.00 3.86
4271 4711 3.752747 TGGACAACACTATCAGCAATGTG 59.247 43.478 0.00 0.00 36.59 3.21
4346 4791 4.621510 CGGATGTTCACTCCATTCTTCAGA 60.622 45.833 0.00 0.00 32.72 3.27
4427 4872 2.351726 GGATCAATCGAACAAACCCTCG 59.648 50.000 0.00 0.00 36.39 4.63
4525 4970 4.104696 TGCTGCTGATGTTCAAATCATG 57.895 40.909 0.00 0.00 36.03 3.07
4567 5016 0.669625 GCTACACTTTCGCCGGTCTT 60.670 55.000 1.90 0.00 0.00 3.01
4629 5078 5.221661 CGAGGCTGGGGTTATTATATATCCC 60.222 48.000 0.00 4.81 37.59 3.85
4758 5210 0.972134 CTCTGACCTGAAGGCAGTGA 59.028 55.000 15.73 2.72 40.63 3.41
4761 5213 0.972134 TCACTCTGACCTGAAGGCAG 59.028 55.000 12.09 12.09 41.93 4.85
4778 5230 6.666678 AGAGAATTATCCCTGCATTCTTTCA 58.333 36.000 0.00 0.00 37.38 2.69
4850 5302 9.045223 CATTTATATTTACTCACTGCAGCTACA 57.955 33.333 15.27 0.00 0.00 2.74
4858 5310 9.547753 AGTAGCCACATTTATATTTACTCACTG 57.452 33.333 0.00 0.00 0.00 3.66
4862 5314 7.807680 GCCAGTAGCCACATTTATATTTACTC 58.192 38.462 0.00 0.00 34.35 2.59
4888 5340 6.596888 ACCATCACATGATCAAAGTAGAAGTG 59.403 38.462 0.00 0.00 31.21 3.16
4926 5378 7.278868 ACCGTTCTGAATCTCATGATAAAAGTC 59.721 37.037 0.00 0.00 31.70 3.01
4980 5432 3.691118 TGCTAAGAATGAATCACTGGCAC 59.309 43.478 0.00 0.00 0.00 5.01
4984 5436 6.537660 TCAGACATGCTAAGAATGAATCACTG 59.462 38.462 0.00 0.00 0.00 3.66
4992 5448 7.492352 TGATGATTCAGACATGCTAAGAATG 57.508 36.000 7.67 0.00 0.00 2.67
5023 5479 3.383761 CAACAAAGGTGAAAGTGGCATC 58.616 45.455 0.00 0.00 0.00 3.91
5027 5483 3.317993 CCTACCAACAAAGGTGAAAGTGG 59.682 47.826 0.00 0.00 43.14 4.00
5110 5578 6.568869 ACTTGAGCAGATAAGTGTAGATCAC 58.431 40.000 0.00 0.00 46.46 3.06
5145 5615 6.095680 AGGGCCCAACCTATAATTATCACTA 58.904 40.000 27.56 0.00 39.65 2.74
5146 5616 4.920129 AGGGCCCAACCTATAATTATCACT 59.080 41.667 27.56 0.00 39.65 3.41
5152 5629 2.158460 GCAGAGGGCCCAACCTATAATT 60.158 50.000 27.56 0.00 42.10 1.40
5194 5671 3.543680 TGGAACCTGCATCTTAGCTAC 57.456 47.619 0.00 0.00 34.99 3.58
5209 5686 1.734465 CCGAATGTCTCAGCTTGGAAC 59.266 52.381 0.00 0.00 0.00 3.62
5244 5722 3.017314 CATCGTCGTAGTCGCCGC 61.017 66.667 0.00 0.00 38.31 6.53
5249 5727 1.258458 CTCCTCGTCATCGTCGTAGTC 59.742 57.143 0.00 0.00 38.33 2.59
5266 5744 2.598467 TCCGAGGAGGAGAGCTCC 59.402 66.667 10.93 8.50 45.98 4.70
5302 5780 2.999739 TTCCTCCACGGTTCAACGCC 63.000 60.000 0.00 0.00 37.37 5.68
5410 5888 1.801913 CGACTTCCTCGCCGTTCTG 60.802 63.158 0.00 0.00 35.06 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.