Multiple sequence alignment - TraesCS5A01G304700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G304700 chr5A 100.000 4946 0 0 1 4946 513840318 513845263 0.000000e+00 9134.0
1 TraesCS5A01G304700 chr5B 91.891 4563 259 45 437 4946 489278242 489282746 0.000000e+00 6274.0
2 TraesCS5A01G304700 chr5B 86.352 762 61 20 850 1610 6459 7178 0.000000e+00 791.0
3 TraesCS5A01G304700 chr5B 84.860 535 37 21 850 1383 422 913 2.660000e-137 499.0
4 TraesCS5A01G304700 chr5D 91.185 4617 218 70 425 4946 407962005 407966527 0.000000e+00 6096.0
5 TraesCS5A01G304700 chr7B 90.022 461 43 3 1150 1610 541713923 541714380 1.190000e-165 593.0
6 TraesCS5A01G304700 chr7B 94.118 119 4 1 629 747 541711966 541712081 1.410000e-40 178.0
7 TraesCS5A01G304700 chr7B 78.767 292 17 19 749 1020 541713617 541713883 2.380000e-33 154.0
8 TraesCS5A01G304700 chr4A 89.003 291 32 0 1320 1610 686618902 686618612 1.310000e-95 361.0
9 TraesCS5A01G304700 chr3D 83.688 141 14 3 12 143 162011432 162011292 1.870000e-24 124.0
10 TraesCS5A01G304700 chr6A 100.000 28 0 0 1777 1804 560675866 560675839 9.000000e-03 52.8
11 TraesCS5A01G304700 chr4D 100.000 28 0 0 1777 1804 497618377 497618350 9.000000e-03 52.8
12 TraesCS5A01G304700 chr1D 100.000 28 0 0 1777 1804 481457138 481457165 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G304700 chr5A 513840318 513845263 4945 False 9134.000000 9134 100.000000 1 4946 1 chr5A.!!$F1 4945
1 TraesCS5A01G304700 chr5B 489278242 489282746 4504 False 6274.000000 6274 91.891000 437 4946 1 chr5B.!!$F3 4509
2 TraesCS5A01G304700 chr5B 6459 7178 719 False 791.000000 791 86.352000 850 1610 1 chr5B.!!$F2 760
3 TraesCS5A01G304700 chr5D 407962005 407966527 4522 False 6096.000000 6096 91.185000 425 4946 1 chr5D.!!$F1 4521
4 TraesCS5A01G304700 chr7B 541711966 541714380 2414 False 308.333333 593 87.635667 629 1610 3 chr7B.!!$F1 981

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
296 297 0.033920 TCTCTGCGTGTGACTGCATT 59.966 50.0 3.74 0.00 40.89 3.56 F
410 411 0.036306 GGTCAGACCGGTCATTTGGT 59.964 55.0 35.00 11.85 42.42 3.67 F
1131 2715 0.106519 GCAGCCATCACAAGGGGTAT 60.107 55.0 0.00 0.00 34.15 2.73 F
2637 4228 0.343372 AGATGGCCCCTACCAGAGAA 59.657 55.0 0.00 0.00 44.71 2.87 F
3321 4935 0.179045 AGACAACGCTCCTGCACTTT 60.179 50.0 0.00 0.00 39.64 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1726 3310 1.139853 GCTGTCCCCTATTCTGTCCTG 59.860 57.143 0.00 0.00 0.00 3.86 R
2122 3706 2.245028 AGTATACTCCAGAGGCAGTGGA 59.755 50.000 0.00 7.54 42.06 4.02 R
2942 4533 0.808453 GGCACATACGGCGCTTTAGA 60.808 55.000 6.90 0.00 0.00 2.10 R
3510 5124 0.109551 CTGAGAGCTTCGAGACGCAA 60.110 55.000 4.45 0.00 0.00 4.85 R
4418 6058 0.683973 CACTGCCTTCAGGTCAGAGT 59.316 55.000 18.57 4.47 44.54 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.941325 GGTAAAGATGGAGCTGACGG 58.059 55.000 0.00 0.00 0.00 4.79
20 21 1.480954 GGTAAAGATGGAGCTGACGGA 59.519 52.381 0.00 0.00 0.00 4.69
21 22 2.093658 GGTAAAGATGGAGCTGACGGAA 60.094 50.000 0.00 0.00 0.00 4.30
22 23 2.859165 AAAGATGGAGCTGACGGAAA 57.141 45.000 0.00 0.00 0.00 3.13
23 24 2.859165 AAGATGGAGCTGACGGAAAA 57.141 45.000 0.00 0.00 0.00 2.29
24 25 2.100605 AGATGGAGCTGACGGAAAAC 57.899 50.000 0.00 0.00 0.00 2.43
25 26 1.347707 AGATGGAGCTGACGGAAAACA 59.652 47.619 0.00 0.00 0.00 2.83
26 27 1.464997 GATGGAGCTGACGGAAAACAC 59.535 52.381 0.00 0.00 0.00 3.32
27 28 0.468226 TGGAGCTGACGGAAAACACT 59.532 50.000 0.00 0.00 0.00 3.55
28 29 1.134220 TGGAGCTGACGGAAAACACTT 60.134 47.619 0.00 0.00 0.00 3.16
29 30 1.947456 GGAGCTGACGGAAAACACTTT 59.053 47.619 0.00 0.00 0.00 2.66
30 31 2.031944 GGAGCTGACGGAAAACACTTTC 60.032 50.000 0.00 0.00 40.31 2.62
31 32 2.872858 GAGCTGACGGAAAACACTTTCT 59.127 45.455 0.00 0.00 40.76 2.52
32 33 3.279434 AGCTGACGGAAAACACTTTCTT 58.721 40.909 0.00 0.00 40.76 2.52
33 34 3.694566 AGCTGACGGAAAACACTTTCTTT 59.305 39.130 0.00 0.00 40.76 2.52
34 35 3.791353 GCTGACGGAAAACACTTTCTTTG 59.209 43.478 0.00 0.00 40.76 2.77
35 36 4.674362 GCTGACGGAAAACACTTTCTTTGT 60.674 41.667 0.00 0.00 40.76 2.83
36 37 5.379732 TGACGGAAAACACTTTCTTTGTT 57.620 34.783 0.00 0.00 40.76 2.83
37 38 5.157781 TGACGGAAAACACTTTCTTTGTTG 58.842 37.500 0.00 0.00 40.76 3.33
38 39 5.128992 ACGGAAAACACTTTCTTTGTTGT 57.871 34.783 0.00 0.00 40.76 3.32
39 40 5.534407 ACGGAAAACACTTTCTTTGTTGTT 58.466 33.333 0.00 0.00 40.76 2.83
40 41 6.679843 ACGGAAAACACTTTCTTTGTTGTTA 58.320 32.000 0.00 0.00 40.76 2.41
41 42 6.804783 ACGGAAAACACTTTCTTTGTTGTTAG 59.195 34.615 0.00 0.00 40.76 2.34
42 43 6.237463 CGGAAAACACTTTCTTTGTTGTTAGC 60.237 38.462 0.00 0.00 40.76 3.09
43 44 6.811665 GGAAAACACTTTCTTTGTTGTTAGCT 59.188 34.615 0.00 0.00 40.76 3.32
44 45 7.201435 GGAAAACACTTTCTTTGTTGTTAGCTG 60.201 37.037 0.00 0.00 40.76 4.24
45 46 4.672409 ACACTTTCTTTGTTGTTAGCTGC 58.328 39.130 0.00 0.00 0.00 5.25
46 47 4.399303 ACACTTTCTTTGTTGTTAGCTGCT 59.601 37.500 7.57 7.57 0.00 4.24
47 48 5.105756 ACACTTTCTTTGTTGTTAGCTGCTT 60.106 36.000 7.79 0.00 0.00 3.91
48 49 5.807011 CACTTTCTTTGTTGTTAGCTGCTTT 59.193 36.000 7.79 0.00 0.00 3.51
49 50 6.311200 CACTTTCTTTGTTGTTAGCTGCTTTT 59.689 34.615 7.79 0.00 0.00 2.27
50 51 6.873605 ACTTTCTTTGTTGTTAGCTGCTTTTT 59.126 30.769 7.79 0.00 0.00 1.94
69 70 5.350504 TTTTTGCCATCAGGTTTCTTCAA 57.649 34.783 0.00 0.00 37.19 2.69
70 71 4.589216 TTTGCCATCAGGTTTCTTCAAG 57.411 40.909 0.00 0.00 37.19 3.02
71 72 1.888512 TGCCATCAGGTTTCTTCAAGC 59.111 47.619 0.00 0.00 37.19 4.01
72 73 2.165998 GCCATCAGGTTTCTTCAAGCT 58.834 47.619 0.00 0.00 44.46 3.74
78 79 2.165998 AGGTTTCTTCAAGCTGATGGC 58.834 47.619 0.00 0.00 41.89 4.40
79 80 1.888512 GGTTTCTTCAAGCTGATGGCA 59.111 47.619 0.00 0.00 44.79 4.92
80 81 2.297033 GGTTTCTTCAAGCTGATGGCAA 59.703 45.455 0.00 0.00 44.79 4.52
81 82 3.243839 GGTTTCTTCAAGCTGATGGCAAA 60.244 43.478 0.00 0.00 44.79 3.68
82 83 4.370917 GTTTCTTCAAGCTGATGGCAAAA 58.629 39.130 0.00 0.00 44.79 2.44
83 84 4.669206 TTCTTCAAGCTGATGGCAAAAA 57.331 36.364 0.00 0.00 44.79 1.94
84 85 4.247267 TCTTCAAGCTGATGGCAAAAAG 57.753 40.909 0.00 0.00 44.79 2.27
85 86 3.006110 TCTTCAAGCTGATGGCAAAAAGG 59.994 43.478 0.00 0.00 44.79 3.11
86 87 1.619827 TCAAGCTGATGGCAAAAAGGG 59.380 47.619 0.00 0.00 44.79 3.95
87 88 1.345415 CAAGCTGATGGCAAAAAGGGT 59.655 47.619 0.00 0.00 44.79 4.34
88 89 1.260544 AGCTGATGGCAAAAAGGGTC 58.739 50.000 0.00 0.00 44.79 4.46
89 90 0.968405 GCTGATGGCAAAAAGGGTCA 59.032 50.000 0.00 0.00 41.35 4.02
90 91 1.067354 GCTGATGGCAAAAAGGGTCAG 60.067 52.381 7.48 7.48 41.35 3.51
91 92 0.968405 TGATGGCAAAAAGGGTCAGC 59.032 50.000 0.00 0.00 0.00 4.26
92 93 1.260544 GATGGCAAAAAGGGTCAGCT 58.739 50.000 0.00 0.00 0.00 4.24
93 94 2.224992 TGATGGCAAAAAGGGTCAGCTA 60.225 45.455 0.00 0.00 0.00 3.32
94 95 1.909700 TGGCAAAAAGGGTCAGCTAG 58.090 50.000 0.00 0.00 0.00 3.42
95 96 1.177401 GGCAAAAAGGGTCAGCTAGG 58.823 55.000 0.00 0.00 0.00 3.02
96 97 1.547901 GGCAAAAAGGGTCAGCTAGGT 60.548 52.381 0.00 0.00 0.00 3.08
97 98 1.541588 GCAAAAAGGGTCAGCTAGGTG 59.458 52.381 15.93 15.93 0.00 4.00
98 99 2.814097 GCAAAAAGGGTCAGCTAGGTGA 60.814 50.000 20.43 20.43 0.00 4.02
99 100 2.814336 CAAAAAGGGTCAGCTAGGTGAC 59.186 50.000 36.10 36.10 45.30 3.67
100 101 0.608640 AAAGGGTCAGCTAGGTGACG 59.391 55.000 36.00 9.82 46.72 4.35
101 102 1.258445 AAGGGTCAGCTAGGTGACGG 61.258 60.000 36.00 9.47 46.72 4.79
102 103 2.184579 GGTCAGCTAGGTGACGGC 59.815 66.667 36.00 25.03 46.72 5.68
103 104 2.646175 GGTCAGCTAGGTGACGGCA 61.646 63.158 36.00 11.82 46.72 5.69
104 105 1.292223 GTCAGCTAGGTGACGGCAA 59.708 57.895 32.54 6.96 37.69 4.52
105 106 0.320421 GTCAGCTAGGTGACGGCAAA 60.320 55.000 32.54 6.25 37.69 3.68
106 107 0.037326 TCAGCTAGGTGACGGCAAAG 60.037 55.000 20.43 0.00 36.64 2.77
107 108 0.037326 CAGCTAGGTGACGGCAAAGA 60.037 55.000 17.08 0.00 36.64 2.52
108 109 0.685097 AGCTAGGTGACGGCAAAGAA 59.315 50.000 0.00 0.00 36.64 2.52
109 110 1.071699 AGCTAGGTGACGGCAAAGAAA 59.928 47.619 0.00 0.00 36.64 2.52
110 111 1.197036 GCTAGGTGACGGCAAAGAAAC 59.803 52.381 0.00 0.00 34.85 2.78
111 112 1.459592 CTAGGTGACGGCAAAGAAACG 59.540 52.381 0.00 0.00 0.00 3.60
112 113 1.164041 AGGTGACGGCAAAGAAACGG 61.164 55.000 0.00 0.00 0.00 4.44
113 114 1.370051 GTGACGGCAAAGAAACGGC 60.370 57.895 0.00 0.00 35.88 5.68
114 115 1.525077 TGACGGCAAAGAAACGGCT 60.525 52.632 0.00 0.00 36.41 5.52
115 116 1.082104 GACGGCAAAGAAACGGCTG 60.082 57.895 0.00 0.00 39.77 4.85
116 117 2.255252 CGGCAAAGAAACGGCTGG 59.745 61.111 0.00 0.00 0.00 4.85
117 118 2.049156 GGCAAAGAAACGGCTGGC 60.049 61.111 0.00 0.00 0.00 4.85
118 119 2.429069 GCAAAGAAACGGCTGGCG 60.429 61.111 22.58 22.58 0.00 5.69
119 120 2.903547 GCAAAGAAACGGCTGGCGA 61.904 57.895 30.58 0.00 0.00 5.54
120 121 1.207593 CAAAGAAACGGCTGGCGAG 59.792 57.895 30.58 2.19 0.00 5.03
121 122 1.070786 AAAGAAACGGCTGGCGAGA 59.929 52.632 30.58 0.00 0.00 4.04
122 123 0.534203 AAAGAAACGGCTGGCGAGAA 60.534 50.000 30.58 0.00 0.00 2.87
123 124 0.534203 AAGAAACGGCTGGCGAGAAA 60.534 50.000 30.58 0.00 0.00 2.52
124 125 0.951040 AGAAACGGCTGGCGAGAAAG 60.951 55.000 30.58 0.00 0.00 2.62
125 126 1.227853 AAACGGCTGGCGAGAAAGT 60.228 52.632 30.58 3.15 0.00 2.66
126 127 0.818040 AAACGGCTGGCGAGAAAGTT 60.818 50.000 30.58 9.84 0.00 2.66
127 128 1.228657 AACGGCTGGCGAGAAAGTTC 61.229 55.000 30.58 0.00 0.00 3.01
128 129 2.391389 CGGCTGGCGAGAAAGTTCC 61.391 63.158 19.64 0.00 0.00 3.62
129 130 1.003233 GGCTGGCGAGAAAGTTCCT 60.003 57.895 0.00 0.00 0.00 3.36
130 131 1.301677 GGCTGGCGAGAAAGTTCCTG 61.302 60.000 0.00 0.00 0.00 3.86
131 132 0.320771 GCTGGCGAGAAAGTTCCTGA 60.321 55.000 0.00 0.00 0.00 3.86
132 133 1.878102 GCTGGCGAGAAAGTTCCTGAA 60.878 52.381 0.00 0.00 0.00 3.02
133 134 2.704572 CTGGCGAGAAAGTTCCTGAAT 58.295 47.619 0.00 0.00 0.00 2.57
134 135 2.675348 CTGGCGAGAAAGTTCCTGAATC 59.325 50.000 0.00 0.00 0.00 2.52
135 136 2.010497 GGCGAGAAAGTTCCTGAATCC 58.990 52.381 0.00 0.00 0.00 3.01
136 137 2.615493 GGCGAGAAAGTTCCTGAATCCA 60.615 50.000 0.00 0.00 0.00 3.41
137 138 2.675348 GCGAGAAAGTTCCTGAATCCAG 59.325 50.000 0.00 0.00 40.09 3.86
138 139 3.866449 GCGAGAAAGTTCCTGAATCCAGT 60.866 47.826 0.00 0.00 38.74 4.00
139 140 4.620803 GCGAGAAAGTTCCTGAATCCAGTA 60.621 45.833 0.00 0.00 38.74 2.74
140 141 5.479306 CGAGAAAGTTCCTGAATCCAGTAA 58.521 41.667 0.00 0.00 38.74 2.24
141 142 6.109359 CGAGAAAGTTCCTGAATCCAGTAAT 58.891 40.000 0.00 0.00 38.74 1.89
142 143 6.036517 CGAGAAAGTTCCTGAATCCAGTAATG 59.963 42.308 0.00 0.00 38.74 1.90
143 144 6.183347 AGAAAGTTCCTGAATCCAGTAATGG 58.817 40.000 1.82 1.82 38.74 3.16
144 145 4.510167 AGTTCCTGAATCCAGTAATGGG 57.490 45.455 9.77 0.00 38.74 4.00
145 146 2.952310 GTTCCTGAATCCAGTAATGGGC 59.048 50.000 9.77 0.12 38.74 5.36
146 147 2.492025 TCCTGAATCCAGTAATGGGCT 58.508 47.619 9.77 0.00 38.74 5.19
147 148 3.664320 TCCTGAATCCAGTAATGGGCTA 58.336 45.455 9.77 0.00 38.74 3.93
148 149 3.648067 TCCTGAATCCAGTAATGGGCTAG 59.352 47.826 9.77 3.38 38.74 3.42
149 150 3.244700 CCTGAATCCAGTAATGGGCTAGG 60.245 52.174 9.77 8.57 38.74 3.02
150 151 2.711009 TGAATCCAGTAATGGGCTAGGG 59.289 50.000 9.77 0.00 0.00 3.53
151 152 2.514726 ATCCAGTAATGGGCTAGGGT 57.485 50.000 9.77 0.00 0.00 4.34
152 153 2.280308 TCCAGTAATGGGCTAGGGTT 57.720 50.000 9.77 0.00 0.00 4.11
153 154 1.843851 TCCAGTAATGGGCTAGGGTTG 59.156 52.381 9.77 0.00 0.00 3.77
154 155 1.564348 CCAGTAATGGGCTAGGGTTGT 59.436 52.381 0.00 0.00 0.00 3.32
155 156 2.775384 CCAGTAATGGGCTAGGGTTGTA 59.225 50.000 0.00 0.00 0.00 2.41
156 157 3.181454 CCAGTAATGGGCTAGGGTTGTAG 60.181 52.174 0.00 0.00 0.00 2.74
157 158 3.454812 CAGTAATGGGCTAGGGTTGTAGT 59.545 47.826 0.00 0.00 0.00 2.73
158 159 3.454812 AGTAATGGGCTAGGGTTGTAGTG 59.545 47.826 0.00 0.00 0.00 2.74
159 160 0.546598 ATGGGCTAGGGTTGTAGTGC 59.453 55.000 0.00 0.00 0.00 4.40
160 161 0.546747 TGGGCTAGGGTTGTAGTGCT 60.547 55.000 0.00 0.00 0.00 4.40
161 162 0.107654 GGGCTAGGGTTGTAGTGCTG 60.108 60.000 0.00 0.00 0.00 4.41
162 163 0.613777 GGCTAGGGTTGTAGTGCTGT 59.386 55.000 0.00 0.00 0.00 4.40
163 164 1.405661 GGCTAGGGTTGTAGTGCTGTC 60.406 57.143 0.00 0.00 0.00 3.51
164 165 1.550976 GCTAGGGTTGTAGTGCTGTCT 59.449 52.381 0.00 0.00 0.00 3.41
165 166 2.028020 GCTAGGGTTGTAGTGCTGTCTT 60.028 50.000 0.00 0.00 0.00 3.01
166 167 2.841442 AGGGTTGTAGTGCTGTCTTC 57.159 50.000 0.00 0.00 0.00 2.87
167 168 1.000955 AGGGTTGTAGTGCTGTCTTCG 59.999 52.381 0.00 0.00 0.00 3.79
168 169 1.000506 GGGTTGTAGTGCTGTCTTCGA 59.999 52.381 0.00 0.00 0.00 3.71
169 170 2.059541 GGTTGTAGTGCTGTCTTCGAC 58.940 52.381 0.00 0.00 0.00 4.20
170 171 2.288273 GGTTGTAGTGCTGTCTTCGACT 60.288 50.000 0.00 0.00 33.15 4.18
171 172 3.381949 GTTGTAGTGCTGTCTTCGACTT 58.618 45.455 0.00 0.00 33.15 3.01
172 173 4.543692 GTTGTAGTGCTGTCTTCGACTTA 58.456 43.478 0.00 0.00 33.15 2.24
173 174 4.841443 TGTAGTGCTGTCTTCGACTTAA 57.159 40.909 0.00 0.00 33.15 1.85
174 175 5.190992 TGTAGTGCTGTCTTCGACTTAAA 57.809 39.130 0.00 0.00 33.15 1.52
175 176 5.779922 TGTAGTGCTGTCTTCGACTTAAAT 58.220 37.500 0.00 0.00 33.15 1.40
176 177 6.916440 TGTAGTGCTGTCTTCGACTTAAATA 58.084 36.000 0.00 0.00 33.15 1.40
177 178 7.027760 TGTAGTGCTGTCTTCGACTTAAATAG 58.972 38.462 0.00 0.00 33.15 1.73
178 179 6.268825 AGTGCTGTCTTCGACTTAAATAGA 57.731 37.500 0.00 0.00 33.15 1.98
179 180 6.868622 AGTGCTGTCTTCGACTTAAATAGAT 58.131 36.000 0.00 0.00 33.15 1.98
180 181 6.754209 AGTGCTGTCTTCGACTTAAATAGATG 59.246 38.462 0.00 0.00 33.15 2.90
181 182 6.019479 GTGCTGTCTTCGACTTAAATAGATGG 60.019 42.308 0.00 0.00 33.15 3.51
182 183 5.463724 GCTGTCTTCGACTTAAATAGATGGG 59.536 44.000 0.00 0.00 33.15 4.00
183 184 5.357257 TGTCTTCGACTTAAATAGATGGGC 58.643 41.667 0.00 0.00 33.15 5.36
184 185 5.128827 TGTCTTCGACTTAAATAGATGGGCT 59.871 40.000 0.00 0.00 33.15 5.19
185 186 6.049790 GTCTTCGACTTAAATAGATGGGCTT 58.950 40.000 0.00 0.00 0.00 4.35
186 187 6.018669 GTCTTCGACTTAAATAGATGGGCTTG 60.019 42.308 0.00 0.00 0.00 4.01
187 188 4.127171 TCGACTTAAATAGATGGGCTTGC 58.873 43.478 0.00 0.00 0.00 4.01
188 189 4.130118 CGACTTAAATAGATGGGCTTGCT 58.870 43.478 0.00 0.00 0.00 3.91
189 190 4.576463 CGACTTAAATAGATGGGCTTGCTT 59.424 41.667 0.00 0.00 0.00 3.91
190 191 5.277538 CGACTTAAATAGATGGGCTTGCTTC 60.278 44.000 0.00 0.00 0.00 3.86
191 192 4.889995 ACTTAAATAGATGGGCTTGCTTCC 59.110 41.667 0.00 0.00 0.00 3.46
192 193 3.677156 AAATAGATGGGCTTGCTTCCT 57.323 42.857 0.00 0.00 0.00 3.36
193 194 2.947127 ATAGATGGGCTTGCTTCCTC 57.053 50.000 0.00 0.00 0.00 3.71
194 195 0.465705 TAGATGGGCTTGCTTCCTCG 59.534 55.000 0.00 0.00 0.00 4.63
195 196 1.221840 GATGGGCTTGCTTCCTCGA 59.778 57.895 0.00 0.00 0.00 4.04
196 197 0.813210 GATGGGCTTGCTTCCTCGAG 60.813 60.000 5.13 5.13 0.00 4.04
197 198 2.821810 GGGCTTGCTTCCTCGAGC 60.822 66.667 6.99 0.00 41.64 5.03
203 204 3.184683 GCTTCCTCGAGCAGCACG 61.185 66.667 23.18 5.80 42.25 5.34
204 205 3.184683 CTTCCTCGAGCAGCACGC 61.185 66.667 6.99 0.00 42.91 5.34
205 206 4.742201 TTCCTCGAGCAGCACGCC 62.742 66.667 6.99 0.00 44.04 5.68
230 231 3.813143 CGCCACGCAATGCCATGA 61.813 61.111 0.00 0.00 0.00 3.07
231 232 2.572812 GCCACGCAATGCCATGAA 59.427 55.556 0.00 0.00 0.00 2.57
232 233 1.142314 GCCACGCAATGCCATGAAT 59.858 52.632 0.00 0.00 0.00 2.57
233 234 1.149361 GCCACGCAATGCCATGAATG 61.149 55.000 0.00 0.00 0.00 2.67
234 235 1.149361 CCACGCAATGCCATGAATGC 61.149 55.000 0.00 0.00 35.49 3.56
235 236 0.458716 CACGCAATGCCATGAATGCA 60.459 50.000 0.00 0.00 43.97 3.96
240 241 1.663739 ATGCCATGAATGCATCCGC 59.336 52.632 0.00 0.00 46.04 5.54
249 250 2.345617 TGCATCCGCACCGAGAAA 59.654 55.556 0.00 0.00 45.36 2.52
250 251 2.032634 TGCATCCGCACCGAGAAAC 61.033 57.895 0.00 0.00 45.36 2.78
251 252 3.081133 CATCCGCACCGAGAAACG 58.919 61.111 0.00 0.00 42.18 3.60
252 253 1.445410 CATCCGCACCGAGAAACGA 60.445 57.895 0.00 0.00 45.77 3.85
253 254 1.011968 CATCCGCACCGAGAAACGAA 61.012 55.000 0.00 0.00 45.77 3.85
254 255 0.736325 ATCCGCACCGAGAAACGAAG 60.736 55.000 0.00 0.00 45.77 3.79
255 256 2.380410 CCGCACCGAGAAACGAAGG 61.380 63.158 0.00 0.00 45.77 3.46
256 257 1.372499 CGCACCGAGAAACGAAGGA 60.372 57.895 0.00 0.00 45.77 3.36
257 258 1.344942 CGCACCGAGAAACGAAGGAG 61.345 60.000 0.00 0.00 45.77 3.69
258 259 0.038526 GCACCGAGAAACGAAGGAGA 60.039 55.000 0.00 0.00 45.77 3.71
259 260 1.699343 CACCGAGAAACGAAGGAGAC 58.301 55.000 0.00 0.00 45.77 3.36
260 261 0.240411 ACCGAGAAACGAAGGAGACG 59.760 55.000 0.00 0.00 45.77 4.18
261 262 0.240411 CCGAGAAACGAAGGAGACGT 59.760 55.000 0.00 0.00 45.77 4.34
267 268 4.038036 CGAAGGAGACGTTCGTCG 57.962 61.111 17.46 0.00 41.50 5.12
268 269 1.511464 CGAAGGAGACGTTCGTCGG 60.511 63.158 17.46 3.43 41.50 4.79
269 270 1.871772 GAAGGAGACGTTCGTCGGA 59.128 57.895 17.46 0.00 44.69 4.55
270 271 0.454117 GAAGGAGACGTTCGTCGGAC 60.454 60.000 17.46 12.34 44.69 4.79
271 272 1.860484 AAGGAGACGTTCGTCGGACC 61.860 60.000 17.46 19.40 44.69 4.46
272 273 2.177778 GAGACGTTCGTCGGACCC 59.822 66.667 17.46 4.90 44.69 4.46
273 274 2.282040 AGACGTTCGTCGGACCCT 60.282 61.111 17.46 0.00 44.69 4.34
274 275 2.177778 GACGTTCGTCGGACCCTC 59.822 66.667 9.50 0.00 44.69 4.30
275 276 3.657835 GACGTTCGTCGGACCCTCG 62.658 68.421 9.50 7.17 44.69 4.63
276 277 3.425713 CGTTCGTCGGACCCTCGA 61.426 66.667 1.91 2.17 36.76 4.04
277 278 2.758089 CGTTCGTCGGACCCTCGAT 61.758 63.158 1.91 0.00 41.40 3.59
278 279 1.063811 GTTCGTCGGACCCTCGATC 59.936 63.158 1.91 3.30 41.40 3.69
279 280 1.077930 TTCGTCGGACCCTCGATCT 60.078 57.895 1.91 0.00 41.40 2.75
280 281 1.094073 TTCGTCGGACCCTCGATCTC 61.094 60.000 1.91 0.00 41.40 2.75
281 282 1.524165 CGTCGGACCCTCGATCTCT 60.524 63.158 1.91 0.00 41.40 3.10
282 283 1.777030 CGTCGGACCCTCGATCTCTG 61.777 65.000 1.91 0.00 41.40 3.35
283 284 1.824329 TCGGACCCTCGATCTCTGC 60.824 63.158 0.00 0.00 33.92 4.26
284 285 2.725008 GGACCCTCGATCTCTGCG 59.275 66.667 0.00 0.00 0.00 5.18
285 286 2.122167 GGACCCTCGATCTCTGCGT 61.122 63.158 0.00 0.00 0.00 5.24
286 287 1.064946 GACCCTCGATCTCTGCGTG 59.935 63.158 0.00 0.00 0.00 5.34
287 288 1.658686 GACCCTCGATCTCTGCGTGT 61.659 60.000 0.00 0.00 0.00 4.49
288 289 1.226802 CCCTCGATCTCTGCGTGTG 60.227 63.158 0.00 0.00 0.00 3.82
289 290 1.657751 CCCTCGATCTCTGCGTGTGA 61.658 60.000 0.00 0.00 0.00 3.58
290 291 0.524392 CCTCGATCTCTGCGTGTGAC 60.524 60.000 0.00 0.00 0.00 3.67
291 292 0.449786 CTCGATCTCTGCGTGTGACT 59.550 55.000 0.00 0.00 0.00 3.41
292 293 0.169009 TCGATCTCTGCGTGTGACTG 59.831 55.000 0.00 0.00 0.00 3.51
293 294 1.409227 CGATCTCTGCGTGTGACTGC 61.409 60.000 0.00 0.00 0.00 4.40
294 295 0.389037 GATCTCTGCGTGTGACTGCA 60.389 55.000 3.33 3.33 39.13 4.41
295 296 0.248565 ATCTCTGCGTGTGACTGCAT 59.751 50.000 3.74 0.00 40.89 3.96
296 297 0.033920 TCTCTGCGTGTGACTGCATT 59.966 50.000 3.74 0.00 40.89 3.56
297 298 0.165295 CTCTGCGTGTGACTGCATTG 59.835 55.000 3.74 0.00 40.89 2.82
298 299 1.208358 CTGCGTGTGACTGCATTGG 59.792 57.895 3.74 0.00 40.89 3.16
299 300 2.126734 GCGTGTGACTGCATTGGC 60.127 61.111 0.00 0.00 41.68 4.52
300 301 2.562912 CGTGTGACTGCATTGGCC 59.437 61.111 0.00 0.00 40.13 5.36
301 302 2.964978 GTGTGACTGCATTGGCCC 59.035 61.111 0.00 0.00 40.13 5.80
302 303 1.604593 GTGTGACTGCATTGGCCCT 60.605 57.895 0.00 0.00 40.13 5.19
303 304 1.153524 TGTGACTGCATTGGCCCTT 59.846 52.632 0.00 0.00 40.13 3.95
304 305 1.180456 TGTGACTGCATTGGCCCTTG 61.180 55.000 0.00 0.00 40.13 3.61
305 306 2.277591 TGACTGCATTGGCCCTTGC 61.278 57.895 17.71 17.71 40.13 4.01
306 307 2.203669 ACTGCATTGGCCCTTGCA 60.204 55.556 23.65 23.65 46.03 4.08
308 309 2.203669 TGCATTGGCCCTTGCAGT 60.204 55.556 21.99 0.00 43.54 4.40
309 310 2.277591 TGCATTGGCCCTTGCAGTC 61.278 57.895 21.99 0.00 43.54 3.51
310 311 2.277591 GCATTGGCCCTTGCAGTCA 61.278 57.895 19.18 0.00 40.13 3.41
311 312 1.888018 CATTGGCCCTTGCAGTCAG 59.112 57.895 0.00 0.00 40.13 3.51
312 313 1.980772 ATTGGCCCTTGCAGTCAGC 60.981 57.895 0.00 0.00 45.96 4.26
313 314 4.666253 TGGCCCTTGCAGTCAGCC 62.666 66.667 0.00 11.06 44.83 4.85
316 317 4.020617 CCCTTGCAGTCAGCCCGA 62.021 66.667 0.00 0.00 44.83 5.14
317 318 2.743928 CCTTGCAGTCAGCCCGAC 60.744 66.667 0.00 0.00 44.83 4.79
330 331 3.118454 CCGACATGACGGTGGTGC 61.118 66.667 25.47 0.00 46.70 5.01
331 332 3.118454 CGACATGACGGTGGTGCC 61.118 66.667 9.78 0.00 0.00 5.01
332 333 2.347490 GACATGACGGTGGTGCCT 59.653 61.111 0.00 0.00 34.25 4.75
333 334 2.032528 ACATGACGGTGGTGCCTG 59.967 61.111 0.00 0.00 34.25 4.85
334 335 2.347114 CATGACGGTGGTGCCTGA 59.653 61.111 0.00 0.00 34.25 3.86
335 336 1.742880 CATGACGGTGGTGCCTGAG 60.743 63.158 0.00 0.00 34.25 3.35
336 337 2.217038 ATGACGGTGGTGCCTGAGT 61.217 57.895 0.00 0.00 34.25 3.41
337 338 2.357517 GACGGTGGTGCCTGAGTG 60.358 66.667 0.00 0.00 34.25 3.51
338 339 4.626081 ACGGTGGTGCCTGAGTGC 62.626 66.667 0.00 0.00 34.25 4.40
340 341 4.314440 GGTGGTGCCTGAGTGCGA 62.314 66.667 0.00 0.00 0.00 5.10
341 342 3.044305 GTGGTGCCTGAGTGCGAC 61.044 66.667 0.00 0.00 0.00 5.19
342 343 3.233980 TGGTGCCTGAGTGCGACT 61.234 61.111 0.00 0.00 0.00 4.18
343 344 2.740055 GGTGCCTGAGTGCGACTG 60.740 66.667 0.00 0.00 0.00 3.51
344 345 2.029666 GTGCCTGAGTGCGACTGT 59.970 61.111 0.00 0.00 0.00 3.55
345 346 2.029518 TGCCTGAGTGCGACTGTG 59.970 61.111 0.00 0.00 0.00 3.66
346 347 3.418068 GCCTGAGTGCGACTGTGC 61.418 66.667 0.00 0.00 0.00 4.57
347 348 2.740055 CCTGAGTGCGACTGTGCC 60.740 66.667 0.00 0.00 0.00 5.01
348 349 2.341543 CTGAGTGCGACTGTGCCT 59.658 61.111 0.00 0.00 0.00 4.75
349 350 1.735920 CTGAGTGCGACTGTGCCTC 60.736 63.158 0.00 0.35 34.65 4.70
350 351 2.807045 GAGTGCGACTGTGCCTCG 60.807 66.667 0.00 0.00 0.00 4.63
351 352 3.559657 GAGTGCGACTGTGCCTCGT 62.560 63.158 0.00 0.00 33.51 4.18
352 353 2.661866 GTGCGACTGTGCCTCGTT 60.662 61.111 0.00 0.00 33.51 3.85
353 354 1.372499 GTGCGACTGTGCCTCGTTA 60.372 57.895 0.00 0.00 33.51 3.18
354 355 0.736325 GTGCGACTGTGCCTCGTTAT 60.736 55.000 0.00 0.00 33.51 1.89
355 356 0.812549 TGCGACTGTGCCTCGTTATA 59.187 50.000 0.00 0.00 33.51 0.98
356 357 1.407618 TGCGACTGTGCCTCGTTATAT 59.592 47.619 0.00 0.00 33.51 0.86
357 358 2.052157 GCGACTGTGCCTCGTTATATC 58.948 52.381 0.00 0.00 33.51 1.63
358 359 2.662700 CGACTGTGCCTCGTTATATCC 58.337 52.381 0.00 0.00 0.00 2.59
359 360 2.662700 GACTGTGCCTCGTTATATCCG 58.337 52.381 0.00 0.00 0.00 4.18
360 361 2.029623 ACTGTGCCTCGTTATATCCGT 58.970 47.619 0.00 0.00 0.00 4.69
361 362 2.034305 ACTGTGCCTCGTTATATCCGTC 59.966 50.000 0.00 0.00 0.00 4.79
362 363 1.338973 TGTGCCTCGTTATATCCGTCC 59.661 52.381 0.00 0.00 0.00 4.79
363 364 0.963962 TGCCTCGTTATATCCGTCCC 59.036 55.000 0.00 0.00 0.00 4.46
364 365 0.963962 GCCTCGTTATATCCGTCCCA 59.036 55.000 0.00 0.00 0.00 4.37
365 366 1.336609 GCCTCGTTATATCCGTCCCAC 60.337 57.143 0.00 0.00 0.00 4.61
366 367 1.068748 CCTCGTTATATCCGTCCCACG 60.069 57.143 0.00 0.00 42.11 4.94
367 368 1.605710 CTCGTTATATCCGTCCCACGT 59.394 52.381 0.00 0.00 40.58 4.49
368 369 2.807967 CTCGTTATATCCGTCCCACGTA 59.192 50.000 0.00 0.00 40.58 3.57
369 370 3.411446 TCGTTATATCCGTCCCACGTAT 58.589 45.455 0.00 0.00 40.58 3.06
370 371 4.574892 TCGTTATATCCGTCCCACGTATA 58.425 43.478 0.00 0.00 40.58 1.47
371 372 4.631377 TCGTTATATCCGTCCCACGTATAG 59.369 45.833 0.00 0.00 40.58 1.31
372 373 4.201851 CGTTATATCCGTCCCACGTATAGG 60.202 50.000 0.00 0.00 40.58 2.57
373 374 1.538047 TATCCGTCCCACGTATAGGC 58.462 55.000 0.00 0.00 40.58 3.93
374 375 1.183676 ATCCGTCCCACGTATAGGCC 61.184 60.000 0.00 0.00 40.58 5.19
375 376 2.333938 CGTCCCACGTATAGGCCG 59.666 66.667 0.00 0.00 36.74 6.13
376 377 2.732658 GTCCCACGTATAGGCCGG 59.267 66.667 0.00 0.00 0.00 6.13
377 378 1.829533 GTCCCACGTATAGGCCGGA 60.830 63.158 5.05 0.00 0.00 5.14
378 379 1.154454 TCCCACGTATAGGCCGGAT 59.846 57.895 5.05 0.00 0.00 4.18
379 380 0.405198 TCCCACGTATAGGCCGGATA 59.595 55.000 5.05 0.00 0.00 2.59
380 381 1.006281 TCCCACGTATAGGCCGGATAT 59.994 52.381 5.05 5.10 0.00 1.63
381 382 1.136305 CCCACGTATAGGCCGGATATG 59.864 57.143 5.05 14.93 0.00 1.78
382 383 2.097036 CCACGTATAGGCCGGATATGA 58.903 52.381 20.64 0.00 0.00 2.15
383 384 2.099263 CCACGTATAGGCCGGATATGAG 59.901 54.545 20.64 14.78 0.00 2.90
384 385 3.014623 CACGTATAGGCCGGATATGAGA 58.985 50.000 20.64 0.00 0.00 3.27
385 386 3.442625 CACGTATAGGCCGGATATGAGAA 59.557 47.826 20.64 0.00 0.00 2.87
386 387 4.082408 CACGTATAGGCCGGATATGAGAAA 60.082 45.833 20.64 0.00 0.00 2.52
387 388 4.710375 ACGTATAGGCCGGATATGAGAAAT 59.290 41.667 20.64 2.11 0.00 2.17
388 389 5.043903 CGTATAGGCCGGATATGAGAAATG 58.956 45.833 5.05 0.00 0.00 2.32
389 390 5.394224 CGTATAGGCCGGATATGAGAAATGT 60.394 44.000 5.05 0.00 0.00 2.71
390 391 3.409026 AGGCCGGATATGAGAAATGTC 57.591 47.619 5.05 0.00 0.00 3.06
391 392 2.069273 GGCCGGATATGAGAAATGTCG 58.931 52.381 5.05 0.00 0.00 4.35
392 393 2.069273 GCCGGATATGAGAAATGTCGG 58.931 52.381 5.05 0.00 39.26 4.79
393 394 2.548067 GCCGGATATGAGAAATGTCGGT 60.548 50.000 5.05 0.00 38.60 4.69
394 395 3.318017 CCGGATATGAGAAATGTCGGTC 58.682 50.000 0.00 0.00 0.00 4.79
395 396 3.243737 CCGGATATGAGAAATGTCGGTCA 60.244 47.826 0.00 0.00 0.00 4.02
396 397 3.983988 CGGATATGAGAAATGTCGGTCAG 59.016 47.826 0.00 0.00 0.00 3.51
397 398 4.261614 CGGATATGAGAAATGTCGGTCAGA 60.262 45.833 0.00 0.00 0.00 3.27
409 410 2.854522 GGTCAGACCGGTCATTTGG 58.145 57.895 35.00 18.46 0.00 3.28
410 411 0.036306 GGTCAGACCGGTCATTTGGT 59.964 55.000 35.00 11.85 42.42 3.67
411 412 1.156736 GTCAGACCGGTCATTTGGTG 58.843 55.000 35.00 22.90 38.99 4.17
412 413 0.762418 TCAGACCGGTCATTTGGTGT 59.238 50.000 35.00 10.24 38.99 4.16
413 414 0.874390 CAGACCGGTCATTTGGTGTG 59.126 55.000 35.00 18.44 42.23 3.82
414 415 0.889186 AGACCGGTCATTTGGTGTGC 60.889 55.000 35.00 5.32 38.99 4.57
415 416 2.182614 GACCGGTCATTTGGTGTGCG 62.183 60.000 29.75 0.00 38.99 5.34
416 417 1.963855 CCGGTCATTTGGTGTGCGA 60.964 57.895 0.00 0.00 0.00 5.10
417 418 1.511318 CCGGTCATTTGGTGTGCGAA 61.511 55.000 0.00 0.00 0.00 4.70
418 419 0.110238 CGGTCATTTGGTGTGCGAAG 60.110 55.000 0.00 0.00 0.00 3.79
419 420 1.234821 GGTCATTTGGTGTGCGAAGA 58.765 50.000 0.00 0.00 0.00 2.87
420 421 1.197721 GGTCATTTGGTGTGCGAAGAG 59.802 52.381 0.00 0.00 0.00 2.85
421 422 1.197721 GTCATTTGGTGTGCGAAGAGG 59.802 52.381 0.00 0.00 0.00 3.69
422 423 1.202758 TCATTTGGTGTGCGAAGAGGT 60.203 47.619 0.00 0.00 0.00 3.85
423 424 1.197721 CATTTGGTGTGCGAAGAGGTC 59.802 52.381 0.00 0.00 0.00 3.85
514 515 2.101750 TCACAGTGACTGGCGAGTAAAA 59.898 45.455 17.92 0.00 35.51 1.52
531 532 6.183359 CGAGTAAAACAATGTCACGTAGTACC 60.183 42.308 0.00 0.00 41.61 3.34
536 541 0.813184 ATGTCACGTAGTACCACCGG 59.187 55.000 0.00 0.00 41.61 5.28
594 610 2.725815 GCACGGCAAAGCAACGAC 60.726 61.111 0.00 0.00 0.00 4.34
595 611 2.425124 CACGGCAAAGCAACGACG 60.425 61.111 0.00 0.00 0.00 5.12
596 612 2.586635 ACGGCAAAGCAACGACGA 60.587 55.556 0.00 0.00 0.00 4.20
772 2327 1.221466 TTCTTCCTGCGTTCACAGCG 61.221 55.000 0.00 0.00 36.29 5.18
776 2335 3.782244 CTGCGTTCACAGCGAGCC 61.782 66.667 0.00 0.00 37.44 4.70
800 2359 0.455295 CACGAGCGTTCACTCCTCTC 60.455 60.000 0.00 0.00 32.79 3.20
801 2360 0.606944 ACGAGCGTTCACTCCTCTCT 60.607 55.000 0.00 0.00 32.79 3.10
823 2386 1.181786 CACTGACTCACTCCCCTCTC 58.818 60.000 0.00 0.00 0.00 3.20
836 2399 1.555765 CCCCTCTCTCTTCTTCCCCAA 60.556 57.143 0.00 0.00 0.00 4.12
837 2400 2.486716 CCCTCTCTCTTCTTCCCCAAT 58.513 52.381 0.00 0.00 0.00 3.16
839 2402 2.437651 CCTCTCTCTTCTTCCCCAATCC 59.562 54.545 0.00 0.00 0.00 3.01
841 2404 1.492599 CTCTCTTCTTCCCCAATCCCC 59.507 57.143 0.00 0.00 0.00 4.81
843 2406 0.999712 TCTTCTTCCCCAATCCCCAC 59.000 55.000 0.00 0.00 0.00 4.61
844 2407 0.704076 CTTCTTCCCCAATCCCCACA 59.296 55.000 0.00 0.00 0.00 4.17
845 2408 0.407918 TTCTTCCCCAATCCCCACAC 59.592 55.000 0.00 0.00 0.00 3.82
846 2409 1.378514 CTTCCCCAATCCCCACACG 60.379 63.158 0.00 0.00 0.00 4.49
847 2410 3.577334 TTCCCCAATCCCCACACGC 62.577 63.158 0.00 0.00 0.00 5.34
889 2466 1.214062 CTTCAGTCTCGCCGAGCTT 59.786 57.895 9.77 0.00 0.00 3.74
890 2467 1.075425 CTTCAGTCTCGCCGAGCTTG 61.075 60.000 9.77 10.06 0.00 4.01
891 2468 3.184683 CAGTCTCGCCGAGCTTGC 61.185 66.667 9.77 0.00 0.00 4.01
926 2503 1.895238 CGTGGTAGGTGGTAGGTGG 59.105 63.158 0.00 0.00 0.00 4.61
928 2505 1.985662 TGGTAGGTGGTAGGTGGCG 60.986 63.158 0.00 0.00 0.00 5.69
1081 2665 2.765699 CTCTTCCTCCTCCCTTCTTCTG 59.234 54.545 0.00 0.00 0.00 3.02
1126 2710 2.360350 ACGGCAGCCATCACAAGG 60.360 61.111 13.30 0.00 0.00 3.61
1129 2713 2.036256 GCAGCCATCACAAGGGGT 59.964 61.111 0.00 0.00 37.60 4.95
1131 2715 0.106519 GCAGCCATCACAAGGGGTAT 60.107 55.000 0.00 0.00 34.15 2.73
1452 3036 3.878519 GTCCTCCTCCTCGTCGCG 61.879 72.222 0.00 0.00 0.00 5.87
1551 3135 2.158798 ACCCGAAGCTTATAAGAAGCCC 60.159 50.000 16.85 0.00 44.01 5.19
1686 3270 2.032528 CTGCCTCGCCAGTTCCAA 59.967 61.111 0.00 0.00 0.00 3.53
1688 3272 3.056328 GCCTCGCCAGTTCCAACC 61.056 66.667 0.00 0.00 0.00 3.77
1693 3277 4.043200 GCCAGTTCCAACCGCAGC 62.043 66.667 0.00 0.00 0.00 5.25
1696 3280 2.281761 AGTTCCAACCGCAGCCAG 60.282 61.111 0.00 0.00 0.00 4.85
1724 3308 2.431683 GCTGTCAAGCCCTGTCCA 59.568 61.111 0.00 0.00 44.22 4.02
1726 3310 1.028868 GCTGTCAAGCCCTGTCCATC 61.029 60.000 0.00 0.00 44.22 3.51
1745 3329 2.752030 TCAGGACAGAATAGGGGACAG 58.248 52.381 0.00 0.00 0.00 3.51
1860 3444 4.335647 CCTGCACCTCCAACGCCT 62.336 66.667 0.00 0.00 0.00 5.52
2028 3612 2.032634 CGCGGCTGCTCTACCAAAA 61.033 57.895 17.03 0.00 39.65 2.44
2122 3706 1.306141 TCATTCCGGTGAGCCCTCT 60.306 57.895 0.00 0.00 0.00 3.69
2127 3711 2.681778 CGGTGAGCCCTCTCCACT 60.682 66.667 14.62 0.00 41.88 4.00
2128 3712 2.985456 GGTGAGCCCTCTCCACTG 59.015 66.667 10.63 0.00 41.53 3.66
2130 3714 3.005539 TGAGCCCTCTCCACTGCC 61.006 66.667 0.00 0.00 38.58 4.85
2131 3715 2.686835 GAGCCCTCTCCACTGCCT 60.687 66.667 0.00 0.00 33.19 4.75
2138 3722 4.126908 CTCCACTGCCTCTGGAGT 57.873 61.111 11.57 0.00 46.91 3.85
2139 3723 3.289797 CTCCACTGCCTCTGGAGTA 57.710 57.895 11.57 0.00 46.91 2.59
2184 3774 2.171237 TCATAGCTGCTGCCATGTACTT 59.829 45.455 19.98 0.14 38.95 2.24
2185 3775 3.387699 TCATAGCTGCTGCCATGTACTTA 59.612 43.478 19.98 1.90 38.95 2.24
2186 3776 2.029838 AGCTGCTGCCATGTACTTAC 57.970 50.000 12.44 0.00 40.80 2.34
2187 3777 1.278985 AGCTGCTGCCATGTACTTACA 59.721 47.619 12.44 0.00 40.80 2.41
2188 3778 1.667724 GCTGCTGCCATGTACTTACAG 59.332 52.381 3.85 0.85 39.92 2.74
2189 3779 2.283298 CTGCTGCCATGTACTTACAGG 58.717 52.381 0.00 0.00 39.92 4.00
2191 3781 2.505407 TGCTGCCATGTACTTACAGGAT 59.495 45.455 2.65 0.00 40.13 3.24
2192 3782 3.054434 TGCTGCCATGTACTTACAGGATT 60.054 43.478 2.65 0.00 40.13 3.01
2193 3783 3.561725 GCTGCCATGTACTTACAGGATTC 59.438 47.826 2.65 0.00 40.13 2.52
2194 3784 3.792401 TGCCATGTACTTACAGGATTCG 58.208 45.455 2.65 0.00 40.13 3.34
2242 3832 4.673298 TGCCACTGCCGTGTACCG 62.673 66.667 7.53 0.00 39.55 4.02
2464 4055 3.722728 TGATGGTGAGATGAGATGACG 57.277 47.619 0.00 0.00 0.00 4.35
2466 4057 0.461548 TGGTGAGATGAGATGACGCC 59.538 55.000 0.00 0.00 0.00 5.68
2489 4080 6.573289 GCCATACCCACACACATTTCATTTTA 60.573 38.462 0.00 0.00 0.00 1.52
2505 4096 7.465353 TTCATTTTATGAACCTGCATTCAGA 57.535 32.000 8.59 1.46 43.84 3.27
2564 4155 1.528161 GCTTGTGTTGCCATTTCTTGC 59.472 47.619 0.00 0.00 0.00 4.01
2583 4174 3.564345 AAGTGCAGGCCAGGCAGAG 62.564 63.158 20.91 2.93 42.85 3.35
2637 4228 0.343372 AGATGGCCCCTACCAGAGAA 59.657 55.000 0.00 0.00 44.71 2.87
2777 4368 3.857052 TCTACATCGCCAACTTCGATTT 58.143 40.909 0.00 0.00 43.27 2.17
2807 4398 0.895530 TACCTCAAGACCGCCTTCAG 59.104 55.000 0.00 0.00 31.42 3.02
2871 4462 5.701224 ACAGTTTTAGATGACAAAAGGGGA 58.299 37.500 0.00 0.00 0.00 4.81
2934 4525 5.497474 ACTCTTGTTTCTGTAAAGGTGTGT 58.503 37.500 0.00 0.00 0.00 3.72
2939 4530 5.010933 TGTTTCTGTAAAGGTGTGTTTGGA 58.989 37.500 0.00 0.00 0.00 3.53
2942 4533 5.304686 TCTGTAAAGGTGTGTTTGGAGAT 57.695 39.130 0.00 0.00 0.00 2.75
2979 4570 4.581409 TGTGCCATGTTCCTATGATCATTG 59.419 41.667 14.65 11.96 30.25 2.82
2985 4576 1.059098 TCCTATGATCATTGGCCGCT 58.941 50.000 25.94 0.00 34.38 5.52
3020 4634 8.731275 TTTACCATTTACTGTCATCATGTAGG 57.269 34.615 0.00 0.00 0.00 3.18
3024 4638 6.072838 CCATTTACTGTCATCATGTAGGCATC 60.073 42.308 0.00 0.00 31.99 3.91
3025 4639 3.482156 ACTGTCATCATGTAGGCATCC 57.518 47.619 0.00 0.00 31.99 3.51
3056 4670 9.357652 GCACAATCATGTACTATTGTTCAAAAT 57.642 29.630 14.92 0.00 42.22 1.82
3081 4695 8.868522 TCTCAAATTATTGATTCAGGTGTTCT 57.131 30.769 0.00 0.00 44.29 3.01
3098 4712 3.378112 TGTTCTTTGCAGCATATAGTGGC 59.622 43.478 0.00 0.00 0.00 5.01
3112 4726 9.003658 AGCATATAGTGGCAAATAATCACTTAC 57.996 33.333 0.00 0.00 41.37 2.34
3118 4732 6.151144 AGTGGCAAATAATCACTTACCAACTC 59.849 38.462 0.00 0.00 38.44 3.01
3119 4733 6.007076 TGGCAAATAATCACTTACCAACTCA 58.993 36.000 0.00 0.00 0.00 3.41
3120 4734 6.072175 TGGCAAATAATCACTTACCAACTCAC 60.072 38.462 0.00 0.00 0.00 3.51
3153 4767 0.179059 TTCAGGCAGCGTGTGAAGAA 60.179 50.000 14.62 0.00 0.00 2.52
3258 4872 4.451652 GCGCACGCCTTCAAGCTC 62.452 66.667 0.30 0.00 34.56 4.09
3321 4935 0.179045 AGACAACGCTCCTGCACTTT 60.179 50.000 0.00 0.00 39.64 2.66
3345 4959 2.516227 TCGAGGAGATCACCAAGTCT 57.484 50.000 12.05 0.00 0.00 3.24
3365 4979 1.423541 TGAGGGTGCCAACATTGTAGT 59.576 47.619 0.00 0.00 0.00 2.73
3377 4991 2.224426 ACATTGTAGTCACGAGCCCAAA 60.224 45.455 0.00 0.00 0.00 3.28
3555 5169 2.604914 CGTAAGCAAGATCAGCGATGTT 59.395 45.455 0.00 0.00 37.01 2.71
3556 5170 3.062639 CGTAAGCAAGATCAGCGATGTTT 59.937 43.478 0.00 0.00 37.01 2.83
3585 5199 1.739562 CCAGCAGCTCAGTTCGGAC 60.740 63.158 0.00 0.00 0.00 4.79
3603 5217 2.320587 CGAGCGCTGCAAGAGGTTT 61.321 57.895 18.48 0.00 46.77 3.27
3690 5304 2.756283 CTCGCCCTCTCCCTCGTT 60.756 66.667 0.00 0.00 0.00 3.85
3765 5379 2.503356 ACTGAGGATCTTCATGGTGGTC 59.497 50.000 8.12 0.00 34.92 4.02
3786 5400 1.801913 CGACTTCCTCGCCGTTCTG 60.802 63.158 0.00 0.00 35.06 3.02
3894 5508 2.999739 TTCCTCCACGGTTCAACGCC 63.000 60.000 0.00 0.00 37.37 5.68
3930 5544 2.598467 TCCGAGGAGGAGAGCTCC 59.402 66.667 10.93 8.50 45.98 4.70
3947 5561 1.258458 CTCCTCGTCATCGTCGTAGTC 59.742 57.143 0.00 0.00 38.33 2.59
3952 5566 3.017314 CATCGTCGTAGTCGCCGC 61.017 66.667 0.00 0.00 38.31 6.53
3987 5602 1.734465 CCGAATGTCTCAGCTTGGAAC 59.266 52.381 0.00 0.00 0.00 3.62
4002 5617 3.543680 TGGAACCTGCATCTTAGCTAC 57.456 47.619 0.00 0.00 34.99 3.58
4044 5659 2.158460 GCAGAGGGCCCAACCTATAATT 60.158 50.000 27.56 0.00 42.10 1.40
4086 5708 6.568869 ACTTGAGCAGATAAGTGTAGATCAC 58.431 40.000 0.00 0.00 46.46 3.06
4169 5805 3.317993 CCTACCAACAAAGGTGAAAGTGG 59.682 47.826 0.00 0.00 43.14 4.00
4173 5809 3.383761 CAACAAAGGTGAAAGTGGCATC 58.616 45.455 0.00 0.00 0.00 3.91
4204 5840 7.492352 TGATGATTCAGACATGCTAAGAATG 57.508 36.000 7.67 0.00 0.00 2.67
4212 5848 6.537660 TCAGACATGCTAAGAATGAATCACTG 59.462 38.462 0.00 0.00 0.00 3.66
4216 5856 3.691118 TGCTAAGAATGAATCACTGGCAC 59.309 43.478 0.00 0.00 0.00 5.01
4270 5910 7.278868 ACCGTTCTGAATCTCATGATAAAAGTC 59.721 37.037 0.00 0.00 31.70 3.01
4308 5948 6.596888 ACCATCACATGATCAAAGTAGAAGTG 59.403 38.462 0.00 0.00 31.21 3.16
4333 5973 7.745620 GCCAGTAGCCACATTTATATTTACT 57.254 36.000 0.00 0.00 34.35 2.24
4334 5974 7.807680 GCCAGTAGCCACATTTATATTTACTC 58.192 38.462 0.00 0.00 34.35 2.59
4338 5978 9.547753 AGTAGCCACATTTATATTTACTCACTG 57.452 33.333 0.00 0.00 0.00 3.66
4346 5986 9.045223 CATTTATATTTACTCACTGCAGCTACA 57.955 33.333 15.27 0.00 0.00 2.74
4418 6058 6.666678 AGAGAATTATCCCTGCATTCTTTCA 58.333 36.000 0.00 0.00 37.38 2.69
4435 6075 0.972134 TCACTCTGACCTGAAGGCAG 59.028 55.000 12.09 12.09 41.93 4.85
4438 6078 0.972134 CTCTGACCTGAAGGCAGTGA 59.028 55.000 15.73 2.72 40.63 3.41
4567 6207 5.221661 CGAGGCTGGGGTTATTATATATCCC 60.222 48.000 0.00 4.81 37.59 3.85
4629 6272 0.669625 GCTACACTTTCGCCGGTCTT 60.670 55.000 1.90 0.00 0.00 3.01
4671 6318 4.104696 TGCTGCTGATGTTCAAATCATG 57.895 40.909 0.00 0.00 36.03 3.07
4769 6416 2.351726 GGATCAATCGAACAAACCCTCG 59.648 50.000 0.00 0.00 36.39 4.63
4850 6497 4.621510 CGGATGTTCACTCCATTCTTCAGA 60.622 45.833 0.00 0.00 32.72 3.27
4925 6577 3.752747 TGGACAACACTATCAGCAATGTG 59.247 43.478 0.00 0.00 36.59 3.21
4942 6594 2.722094 TGTGGTATGGTGAATGGAAGC 58.278 47.619 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.973206 TTTCCGTCAGCTCCATCTTTA 57.027 42.857 0.00 0.00 0.00 1.85
3 4 2.814336 GTTTTCCGTCAGCTCCATCTTT 59.186 45.455 0.00 0.00 0.00 2.52
4 5 2.224523 TGTTTTCCGTCAGCTCCATCTT 60.225 45.455 0.00 0.00 0.00 2.40
6 7 1.464997 GTGTTTTCCGTCAGCTCCATC 59.535 52.381 0.00 0.00 0.00 3.51
7 8 1.072331 AGTGTTTTCCGTCAGCTCCAT 59.928 47.619 0.00 0.00 0.00 3.41
8 9 0.468226 AGTGTTTTCCGTCAGCTCCA 59.532 50.000 0.00 0.00 0.00 3.86
9 10 1.594331 AAGTGTTTTCCGTCAGCTCC 58.406 50.000 0.00 0.00 0.00 4.70
10 11 2.872858 AGAAAGTGTTTTCCGTCAGCTC 59.127 45.455 0.00 0.00 42.99 4.09
11 12 2.919228 AGAAAGTGTTTTCCGTCAGCT 58.081 42.857 0.00 0.00 42.99 4.24
12 13 3.692791 AAGAAAGTGTTTTCCGTCAGC 57.307 42.857 0.00 0.00 42.99 4.26
13 14 4.981794 ACAAAGAAAGTGTTTTCCGTCAG 58.018 39.130 0.00 0.00 42.99 3.51
14 15 5.157781 CAACAAAGAAAGTGTTTTCCGTCA 58.842 37.500 0.00 0.00 42.99 4.35
15 16 5.158494 ACAACAAAGAAAGTGTTTTCCGTC 58.842 37.500 0.00 0.00 42.99 4.79
16 17 5.128992 ACAACAAAGAAAGTGTTTTCCGT 57.871 34.783 0.00 0.00 42.99 4.69
17 18 6.237463 GCTAACAACAAAGAAAGTGTTTTCCG 60.237 38.462 0.00 0.00 42.99 4.30
18 19 6.811665 AGCTAACAACAAAGAAAGTGTTTTCC 59.188 34.615 0.00 0.00 42.99 3.13
19 20 7.666377 CAGCTAACAACAAAGAAAGTGTTTTC 58.334 34.615 0.00 0.00 42.44 2.29
20 21 6.090763 GCAGCTAACAACAAAGAAAGTGTTTT 59.909 34.615 0.00 0.00 37.09 2.43
21 22 5.576774 GCAGCTAACAACAAAGAAAGTGTTT 59.423 36.000 0.00 0.00 37.09 2.83
22 23 5.102313 GCAGCTAACAACAAAGAAAGTGTT 58.898 37.500 0.00 0.00 39.79 3.32
23 24 4.399303 AGCAGCTAACAACAAAGAAAGTGT 59.601 37.500 0.00 0.00 0.00 3.55
24 25 4.925068 AGCAGCTAACAACAAAGAAAGTG 58.075 39.130 0.00 0.00 0.00 3.16
25 26 5.582689 AAGCAGCTAACAACAAAGAAAGT 57.417 34.783 0.00 0.00 0.00 2.66
26 27 6.892310 AAAAGCAGCTAACAACAAAGAAAG 57.108 33.333 0.00 0.00 0.00 2.62
47 48 5.350504 TTGAAGAAACCTGATGGCAAAAA 57.649 34.783 0.00 0.00 36.63 1.94
48 49 4.740334 GCTTGAAGAAACCTGATGGCAAAA 60.740 41.667 0.00 0.00 36.63 2.44
49 50 3.243839 GCTTGAAGAAACCTGATGGCAAA 60.244 43.478 0.00 0.00 36.63 3.68
50 51 2.297033 GCTTGAAGAAACCTGATGGCAA 59.703 45.455 0.00 0.00 36.63 4.52
51 52 1.888512 GCTTGAAGAAACCTGATGGCA 59.111 47.619 0.00 0.00 36.63 4.92
52 53 2.094854 CAGCTTGAAGAAACCTGATGGC 60.095 50.000 0.00 0.00 36.63 4.40
53 54 3.415212 TCAGCTTGAAGAAACCTGATGG 58.585 45.455 0.00 0.00 39.83 3.51
55 56 4.015084 CCATCAGCTTGAAGAAACCTGAT 58.985 43.478 7.07 7.07 42.27 2.90
56 57 3.415212 CCATCAGCTTGAAGAAACCTGA 58.585 45.455 0.00 0.00 37.01 3.86
57 58 2.094854 GCCATCAGCTTGAAGAAACCTG 60.095 50.000 0.00 0.00 38.99 4.00
58 59 2.165998 GCCATCAGCTTGAAGAAACCT 58.834 47.619 0.00 0.00 38.99 3.50
59 60 1.888512 TGCCATCAGCTTGAAGAAACC 59.111 47.619 0.00 0.00 44.23 3.27
60 61 3.648339 TTGCCATCAGCTTGAAGAAAC 57.352 42.857 0.00 0.00 44.23 2.78
61 62 4.669206 TTTTGCCATCAGCTTGAAGAAA 57.331 36.364 0.00 0.00 44.23 2.52
62 63 4.501915 CCTTTTTGCCATCAGCTTGAAGAA 60.502 41.667 0.00 0.00 44.23 2.52
63 64 3.006110 CCTTTTTGCCATCAGCTTGAAGA 59.994 43.478 0.00 0.00 44.23 2.87
64 65 3.323243 CCTTTTTGCCATCAGCTTGAAG 58.677 45.455 0.00 0.00 44.23 3.02
65 66 2.037511 CCCTTTTTGCCATCAGCTTGAA 59.962 45.455 0.00 0.00 44.23 2.69
66 67 1.619827 CCCTTTTTGCCATCAGCTTGA 59.380 47.619 0.00 0.00 44.23 3.02
67 68 1.345415 ACCCTTTTTGCCATCAGCTTG 59.655 47.619 0.00 0.00 44.23 4.01
68 69 1.620323 GACCCTTTTTGCCATCAGCTT 59.380 47.619 0.00 0.00 44.23 3.74
69 70 1.260544 GACCCTTTTTGCCATCAGCT 58.739 50.000 0.00 0.00 44.23 4.24
70 71 0.968405 TGACCCTTTTTGCCATCAGC 59.032 50.000 0.00 0.00 44.14 4.26
71 72 1.067354 GCTGACCCTTTTTGCCATCAG 60.067 52.381 0.00 0.00 37.28 2.90
72 73 0.968405 GCTGACCCTTTTTGCCATCA 59.032 50.000 0.00 0.00 0.00 3.07
73 74 1.260544 AGCTGACCCTTTTTGCCATC 58.739 50.000 0.00 0.00 0.00 3.51
74 75 2.450476 CTAGCTGACCCTTTTTGCCAT 58.550 47.619 0.00 0.00 0.00 4.40
75 76 1.547675 CCTAGCTGACCCTTTTTGCCA 60.548 52.381 0.00 0.00 0.00 4.92
76 77 1.177401 CCTAGCTGACCCTTTTTGCC 58.823 55.000 0.00 0.00 0.00 4.52
77 78 1.541588 CACCTAGCTGACCCTTTTTGC 59.458 52.381 0.00 0.00 0.00 3.68
78 79 2.814336 GTCACCTAGCTGACCCTTTTTG 59.186 50.000 6.90 0.00 35.44 2.44
79 80 2.550208 CGTCACCTAGCTGACCCTTTTT 60.550 50.000 11.72 0.00 37.83 1.94
80 81 1.002087 CGTCACCTAGCTGACCCTTTT 59.998 52.381 11.72 0.00 37.83 2.27
81 82 0.608640 CGTCACCTAGCTGACCCTTT 59.391 55.000 11.72 0.00 37.83 3.11
82 83 1.258445 CCGTCACCTAGCTGACCCTT 61.258 60.000 11.72 0.00 37.83 3.95
83 84 1.682684 CCGTCACCTAGCTGACCCT 60.683 63.158 11.72 0.00 37.83 4.34
84 85 2.893398 CCGTCACCTAGCTGACCC 59.107 66.667 11.72 0.00 37.83 4.46
85 86 2.167398 TTGCCGTCACCTAGCTGACC 62.167 60.000 11.72 1.10 37.83 4.02
86 87 0.320421 TTTGCCGTCACCTAGCTGAC 60.320 55.000 7.97 7.97 37.75 3.51
87 88 0.037326 CTTTGCCGTCACCTAGCTGA 60.037 55.000 0.00 0.00 0.00 4.26
88 89 0.037326 TCTTTGCCGTCACCTAGCTG 60.037 55.000 0.00 0.00 0.00 4.24
89 90 0.685097 TTCTTTGCCGTCACCTAGCT 59.315 50.000 0.00 0.00 0.00 3.32
90 91 1.197036 GTTTCTTTGCCGTCACCTAGC 59.803 52.381 0.00 0.00 0.00 3.42
91 92 1.459592 CGTTTCTTTGCCGTCACCTAG 59.540 52.381 0.00 0.00 0.00 3.02
92 93 1.504359 CGTTTCTTTGCCGTCACCTA 58.496 50.000 0.00 0.00 0.00 3.08
93 94 1.164041 CCGTTTCTTTGCCGTCACCT 61.164 55.000 0.00 0.00 0.00 4.00
94 95 1.281656 CCGTTTCTTTGCCGTCACC 59.718 57.895 0.00 0.00 0.00 4.02
95 96 1.370051 GCCGTTTCTTTGCCGTCAC 60.370 57.895 0.00 0.00 0.00 3.67
96 97 1.525077 AGCCGTTTCTTTGCCGTCA 60.525 52.632 0.00 0.00 0.00 4.35
97 98 1.082104 CAGCCGTTTCTTTGCCGTC 60.082 57.895 0.00 0.00 0.00 4.79
98 99 2.551912 CCAGCCGTTTCTTTGCCGT 61.552 57.895 0.00 0.00 0.00 5.68
99 100 2.255252 CCAGCCGTTTCTTTGCCG 59.745 61.111 0.00 0.00 0.00 5.69
100 101 2.049156 GCCAGCCGTTTCTTTGCC 60.049 61.111 0.00 0.00 0.00 4.52
101 102 2.429069 CGCCAGCCGTTTCTTTGC 60.429 61.111 0.00 0.00 0.00 3.68
102 103 1.207593 CTCGCCAGCCGTTTCTTTG 59.792 57.895 0.00 0.00 38.35 2.77
103 104 0.534203 TTCTCGCCAGCCGTTTCTTT 60.534 50.000 0.00 0.00 38.35 2.52
104 105 0.534203 TTTCTCGCCAGCCGTTTCTT 60.534 50.000 0.00 0.00 38.35 2.52
105 106 0.951040 CTTTCTCGCCAGCCGTTTCT 60.951 55.000 0.00 0.00 38.35 2.52
106 107 1.228657 ACTTTCTCGCCAGCCGTTTC 61.229 55.000 0.00 0.00 38.35 2.78
107 108 0.818040 AACTTTCTCGCCAGCCGTTT 60.818 50.000 0.00 0.00 38.35 3.60
108 109 1.227853 AACTTTCTCGCCAGCCGTT 60.228 52.632 0.00 0.00 38.35 4.44
109 110 1.668151 GAACTTTCTCGCCAGCCGT 60.668 57.895 0.00 0.00 38.35 5.68
110 111 2.391389 GGAACTTTCTCGCCAGCCG 61.391 63.158 0.00 0.00 38.61 5.52
111 112 1.003233 AGGAACTTTCTCGCCAGCC 60.003 57.895 0.00 0.00 27.25 4.85
112 113 0.320771 TCAGGAACTTTCTCGCCAGC 60.321 55.000 0.00 0.00 34.60 4.85
113 114 2.169832 TTCAGGAACTTTCTCGCCAG 57.830 50.000 0.00 0.00 34.60 4.85
114 115 2.615493 GGATTCAGGAACTTTCTCGCCA 60.615 50.000 0.00 0.00 34.60 5.69
115 116 2.010497 GGATTCAGGAACTTTCTCGCC 58.990 52.381 0.00 0.00 34.60 5.54
116 117 2.675348 CTGGATTCAGGAACTTTCTCGC 59.325 50.000 0.00 0.00 34.60 5.03
117 118 3.931578 ACTGGATTCAGGAACTTTCTCG 58.068 45.455 5.84 0.00 44.99 4.04
118 119 6.317391 CCATTACTGGATTCAGGAACTTTCTC 59.683 42.308 0.00 0.00 45.75 2.87
119 120 6.183347 CCATTACTGGATTCAGGAACTTTCT 58.817 40.000 0.00 0.00 45.75 2.52
120 121 5.358160 CCCATTACTGGATTCAGGAACTTTC 59.642 44.000 0.00 0.00 45.75 2.62
121 122 5.264395 CCCATTACTGGATTCAGGAACTTT 58.736 41.667 0.00 0.00 45.75 2.66
122 123 4.860022 CCCATTACTGGATTCAGGAACTT 58.140 43.478 0.00 0.00 45.75 2.66
123 124 3.372025 GCCCATTACTGGATTCAGGAACT 60.372 47.826 0.00 0.00 45.75 3.01
124 125 2.952310 GCCCATTACTGGATTCAGGAAC 59.048 50.000 0.00 0.00 45.75 3.62
125 126 2.852449 AGCCCATTACTGGATTCAGGAA 59.148 45.455 0.00 0.00 46.84 3.36
126 127 2.492025 AGCCCATTACTGGATTCAGGA 58.508 47.619 5.84 0.00 46.37 3.86
127 128 3.244700 CCTAGCCCATTACTGGATTCAGG 60.245 52.174 5.84 0.00 46.37 3.86
128 129 3.244700 CCCTAGCCCATTACTGGATTCAG 60.245 52.174 0.00 0.00 46.37 3.02
129 130 2.711009 CCCTAGCCCATTACTGGATTCA 59.289 50.000 0.00 0.00 46.37 2.57
130 131 2.711547 ACCCTAGCCCATTACTGGATTC 59.288 50.000 0.00 0.00 46.37 2.52
131 132 2.789219 ACCCTAGCCCATTACTGGATT 58.211 47.619 0.00 0.00 46.37 3.01
132 133 2.443255 CAACCCTAGCCCATTACTGGAT 59.557 50.000 0.00 0.00 46.37 3.41
133 134 1.843851 CAACCCTAGCCCATTACTGGA 59.156 52.381 0.00 0.00 46.37 3.86
134 135 1.564348 ACAACCCTAGCCCATTACTGG 59.436 52.381 0.00 0.00 42.73 4.00
135 136 3.454812 ACTACAACCCTAGCCCATTACTG 59.545 47.826 0.00 0.00 0.00 2.74
136 137 3.454812 CACTACAACCCTAGCCCATTACT 59.545 47.826 0.00 0.00 0.00 2.24
137 138 3.805207 CACTACAACCCTAGCCCATTAC 58.195 50.000 0.00 0.00 0.00 1.89
138 139 2.171870 GCACTACAACCCTAGCCCATTA 59.828 50.000 0.00 0.00 0.00 1.90
139 140 1.064685 GCACTACAACCCTAGCCCATT 60.065 52.381 0.00 0.00 0.00 3.16
140 141 0.546598 GCACTACAACCCTAGCCCAT 59.453 55.000 0.00 0.00 0.00 4.00
141 142 0.546747 AGCACTACAACCCTAGCCCA 60.547 55.000 0.00 0.00 0.00 5.36
142 143 0.107654 CAGCACTACAACCCTAGCCC 60.108 60.000 0.00 0.00 0.00 5.19
143 144 0.613777 ACAGCACTACAACCCTAGCC 59.386 55.000 0.00 0.00 0.00 3.93
144 145 1.550976 AGACAGCACTACAACCCTAGC 59.449 52.381 0.00 0.00 0.00 3.42
145 146 3.673594 CGAAGACAGCACTACAACCCTAG 60.674 52.174 0.00 0.00 0.00 3.02
146 147 2.230508 CGAAGACAGCACTACAACCCTA 59.769 50.000 0.00 0.00 0.00 3.53
147 148 1.000955 CGAAGACAGCACTACAACCCT 59.999 52.381 0.00 0.00 0.00 4.34
148 149 1.000506 TCGAAGACAGCACTACAACCC 59.999 52.381 0.00 0.00 0.00 4.11
149 150 2.433868 TCGAAGACAGCACTACAACC 57.566 50.000 0.00 0.00 0.00 3.77
162 163 5.871396 AGCCCATCTATTTAAGTCGAAGA 57.129 39.130 0.00 0.00 0.00 2.87
163 164 5.277538 GCAAGCCCATCTATTTAAGTCGAAG 60.278 44.000 0.00 0.00 0.00 3.79
164 165 4.574828 GCAAGCCCATCTATTTAAGTCGAA 59.425 41.667 0.00 0.00 0.00 3.71
165 166 4.127171 GCAAGCCCATCTATTTAAGTCGA 58.873 43.478 0.00 0.00 0.00 4.20
166 167 4.130118 AGCAAGCCCATCTATTTAAGTCG 58.870 43.478 0.00 0.00 0.00 4.18
167 168 5.009110 GGAAGCAAGCCCATCTATTTAAGTC 59.991 44.000 0.00 0.00 0.00 3.01
168 169 4.889995 GGAAGCAAGCCCATCTATTTAAGT 59.110 41.667 0.00 0.00 0.00 2.24
169 170 5.136105 AGGAAGCAAGCCCATCTATTTAAG 58.864 41.667 0.00 0.00 0.00 1.85
170 171 5.129368 AGGAAGCAAGCCCATCTATTTAA 57.871 39.130 0.00 0.00 0.00 1.52
171 172 4.718961 GAGGAAGCAAGCCCATCTATTTA 58.281 43.478 0.00 0.00 0.00 1.40
172 173 3.560105 GAGGAAGCAAGCCCATCTATTT 58.440 45.455 0.00 0.00 0.00 1.40
173 174 2.486191 CGAGGAAGCAAGCCCATCTATT 60.486 50.000 0.00 0.00 0.00 1.73
174 175 1.071385 CGAGGAAGCAAGCCCATCTAT 59.929 52.381 0.00 0.00 0.00 1.98
175 176 0.465705 CGAGGAAGCAAGCCCATCTA 59.534 55.000 0.00 0.00 0.00 1.98
176 177 1.222936 CGAGGAAGCAAGCCCATCT 59.777 57.895 0.00 0.00 0.00 2.90
177 178 0.813210 CTCGAGGAAGCAAGCCCATC 60.813 60.000 3.91 0.00 0.00 3.51
178 179 1.222936 CTCGAGGAAGCAAGCCCAT 59.777 57.895 3.91 0.00 0.00 4.00
179 180 2.665000 CTCGAGGAAGCAAGCCCA 59.335 61.111 3.91 0.00 0.00 5.36
180 181 2.821810 GCTCGAGGAAGCAAGCCC 60.822 66.667 15.58 0.00 42.05 5.19
186 187 3.184683 CGTGCTGCTCGAGGAAGC 61.185 66.667 18.19 16.55 46.72 3.86
187 188 3.184683 GCGTGCTGCTCGAGGAAG 61.185 66.667 25.88 6.79 41.73 3.46
188 189 4.742201 GGCGTGCTGCTCGAGGAA 62.742 66.667 25.88 0.00 45.43 3.36
215 216 1.149361 GCATTCATGGCATTGCGTGG 61.149 55.000 6.86 0.00 0.00 4.94
216 217 0.458716 TGCATTCATGGCATTGCGTG 60.459 50.000 15.63 4.54 37.92 5.34
217 218 1.891616 TGCATTCATGGCATTGCGT 59.108 47.368 15.63 0.00 37.92 5.24
218 219 4.816990 TGCATTCATGGCATTGCG 57.183 50.000 15.63 0.00 37.92 4.85
223 224 3.121934 GCGGATGCATTCATGGCA 58.878 55.556 5.66 0.00 46.66 4.92
233 234 2.785258 GTTTCTCGGTGCGGATGC 59.215 61.111 0.00 0.00 43.20 3.91
234 235 1.011968 TTCGTTTCTCGGTGCGGATG 61.012 55.000 0.00 0.00 40.32 3.51
235 236 0.736325 CTTCGTTTCTCGGTGCGGAT 60.736 55.000 0.00 0.00 40.32 4.18
236 237 1.372499 CTTCGTTTCTCGGTGCGGA 60.372 57.895 0.00 0.00 40.32 5.54
237 238 2.380410 CCTTCGTTTCTCGGTGCGG 61.380 63.158 0.00 0.00 40.32 5.69
238 239 1.344942 CTCCTTCGTTTCTCGGTGCG 61.345 60.000 0.00 0.00 40.32 5.34
239 240 0.038526 TCTCCTTCGTTTCTCGGTGC 60.039 55.000 0.00 0.00 40.32 5.01
240 241 1.699343 GTCTCCTTCGTTTCTCGGTG 58.301 55.000 0.00 0.00 40.32 4.94
241 242 0.240411 CGTCTCCTTCGTTTCTCGGT 59.760 55.000 0.00 0.00 40.32 4.69
242 243 0.240411 ACGTCTCCTTCGTTTCTCGG 59.760 55.000 0.00 0.00 38.38 4.63
243 244 2.047679 AACGTCTCCTTCGTTTCTCG 57.952 50.000 0.00 0.00 46.90 4.04
250 251 1.511464 CCGACGAACGTCTCCTTCG 60.511 63.158 21.67 5.11 44.90 3.79
251 252 0.454117 GTCCGACGAACGTCTCCTTC 60.454 60.000 21.67 7.23 42.54 3.46
252 253 1.578423 GTCCGACGAACGTCTCCTT 59.422 57.895 21.67 0.00 42.54 3.36
253 254 2.331132 GGTCCGACGAACGTCTCCT 61.331 63.158 21.67 0.00 42.54 3.69
254 255 2.177778 GGTCCGACGAACGTCTCC 59.822 66.667 21.67 16.98 42.54 3.71
255 256 2.177778 GGGTCCGACGAACGTCTC 59.822 66.667 21.67 13.06 42.54 3.36
256 257 2.282040 AGGGTCCGACGAACGTCT 60.282 61.111 21.67 2.82 42.54 4.18
257 258 2.177778 GAGGGTCCGACGAACGTC 59.822 66.667 15.92 15.92 40.78 4.34
258 259 3.730761 CGAGGGTCCGACGAACGT 61.731 66.667 0.00 0.00 40.78 3.99
259 260 2.643764 GATCGAGGGTCCGACGAACG 62.644 65.000 11.83 0.00 41.70 3.95
260 261 1.063811 GATCGAGGGTCCGACGAAC 59.936 63.158 11.83 6.90 41.70 3.95
261 262 1.077930 AGATCGAGGGTCCGACGAA 60.078 57.895 11.83 0.00 41.70 3.85
262 263 1.523258 GAGATCGAGGGTCCGACGA 60.523 63.158 10.55 10.55 41.70 4.20
263 264 1.524165 AGAGATCGAGGGTCCGACG 60.524 63.158 0.00 0.00 41.70 5.12
264 265 2.026522 CAGAGATCGAGGGTCCGAC 58.973 63.158 0.00 0.00 41.70 4.79
265 266 1.824329 GCAGAGATCGAGGGTCCGA 60.824 63.158 0.00 0.00 43.16 4.55
266 267 2.725008 GCAGAGATCGAGGGTCCG 59.275 66.667 0.00 0.00 0.00 4.79
267 268 2.122167 ACGCAGAGATCGAGGGTCC 61.122 63.158 0.00 0.00 0.00 4.46
268 269 1.064946 CACGCAGAGATCGAGGGTC 59.935 63.158 0.00 0.00 0.00 4.46
269 270 1.679305 ACACGCAGAGATCGAGGGT 60.679 57.895 0.00 0.00 0.00 4.34
270 271 1.226802 CACACGCAGAGATCGAGGG 60.227 63.158 0.00 0.00 0.00 4.30
271 272 0.524392 GTCACACGCAGAGATCGAGG 60.524 60.000 0.00 0.00 0.00 4.63
272 273 0.449786 AGTCACACGCAGAGATCGAG 59.550 55.000 0.00 0.00 0.00 4.04
273 274 0.169009 CAGTCACACGCAGAGATCGA 59.831 55.000 0.00 0.00 0.00 3.59
274 275 1.409227 GCAGTCACACGCAGAGATCG 61.409 60.000 0.00 0.00 0.00 3.69
275 276 0.389037 TGCAGTCACACGCAGAGATC 60.389 55.000 0.00 0.00 33.34 2.75
276 277 0.248565 ATGCAGTCACACGCAGAGAT 59.751 50.000 0.00 0.00 42.37 2.75
277 278 0.033920 AATGCAGTCACACGCAGAGA 59.966 50.000 0.00 0.00 42.37 3.10
278 279 0.165295 CAATGCAGTCACACGCAGAG 59.835 55.000 0.00 0.00 42.37 3.35
279 280 1.229975 CCAATGCAGTCACACGCAGA 61.230 55.000 0.00 0.00 42.37 4.26
280 281 1.208358 CCAATGCAGTCACACGCAG 59.792 57.895 0.00 0.00 42.37 5.18
281 282 2.906939 GCCAATGCAGTCACACGCA 61.907 57.895 0.00 0.00 43.45 5.24
282 283 2.126734 GCCAATGCAGTCACACGC 60.127 61.111 0.00 0.00 37.47 5.34
283 284 2.562912 GGCCAATGCAGTCACACG 59.437 61.111 0.00 0.00 40.13 4.49
284 285 1.181098 AAGGGCCAATGCAGTCACAC 61.181 55.000 6.18 0.00 40.13 3.82
285 286 1.153524 AAGGGCCAATGCAGTCACA 59.846 52.632 6.18 0.00 40.13 3.58
286 287 1.588082 CAAGGGCCAATGCAGTCAC 59.412 57.895 6.18 0.00 40.13 3.67
287 288 2.277591 GCAAGGGCCAATGCAGTCA 61.278 57.895 24.23 0.00 42.12 3.41
288 289 2.277591 TGCAAGGGCCAATGCAGTC 61.278 57.895 26.91 5.57 46.87 3.51
289 290 2.203669 TGCAAGGGCCAATGCAGT 60.204 55.556 26.91 0.00 46.87 4.40
292 293 2.221906 CTGACTGCAAGGGCCAATGC 62.222 60.000 22.92 22.92 42.86 3.56
293 294 1.888018 CTGACTGCAAGGGCCAATG 59.112 57.895 6.18 5.52 39.30 2.82
294 295 1.980772 GCTGACTGCAAGGGCCAAT 60.981 57.895 6.18 0.00 42.31 3.16
295 296 2.598394 GCTGACTGCAAGGGCCAA 60.598 61.111 6.18 0.00 42.31 4.52
296 297 4.666253 GGCTGACTGCAAGGGCCA 62.666 66.667 6.18 0.00 43.89 5.36
299 300 4.020617 TCGGGCTGACTGCAAGGG 62.021 66.667 6.65 0.00 45.15 3.95
300 301 2.743928 GTCGGGCTGACTGCAAGG 60.744 66.667 19.18 0.00 44.58 3.61
314 315 3.118454 GGCACCACCGTCATGTCG 61.118 66.667 5.32 5.32 0.00 4.35
315 316 2.034879 CAGGCACCACCGTCATGTC 61.035 63.158 0.00 0.00 46.52 3.06
316 317 2.032528 CAGGCACCACCGTCATGT 59.967 61.111 0.00 0.00 46.52 3.21
317 318 1.742880 CTCAGGCACCACCGTCATG 60.743 63.158 0.00 0.00 46.52 3.07
318 319 2.217038 ACTCAGGCACCACCGTCAT 61.217 57.895 0.00 0.00 46.52 3.06
319 320 2.842462 ACTCAGGCACCACCGTCA 60.842 61.111 0.00 0.00 46.52 4.35
320 321 2.357517 CACTCAGGCACCACCGTC 60.358 66.667 0.00 0.00 46.52 4.79
321 322 4.626081 GCACTCAGGCACCACCGT 62.626 66.667 0.00 0.00 46.52 4.83
323 324 4.314440 TCGCACTCAGGCACCACC 62.314 66.667 0.00 0.00 39.61 4.61
324 325 3.044305 GTCGCACTCAGGCACCAC 61.044 66.667 0.00 0.00 0.00 4.16
325 326 3.233980 AGTCGCACTCAGGCACCA 61.234 61.111 0.00 0.00 0.00 4.17
326 327 2.740055 CAGTCGCACTCAGGCACC 60.740 66.667 0.00 0.00 0.00 5.01
327 328 2.029666 ACAGTCGCACTCAGGCAC 59.970 61.111 0.00 0.00 0.00 5.01
328 329 2.029518 CACAGTCGCACTCAGGCA 59.970 61.111 0.00 0.00 0.00 4.75
329 330 3.418068 GCACAGTCGCACTCAGGC 61.418 66.667 0.00 0.00 0.00 4.85
330 331 2.740055 GGCACAGTCGCACTCAGG 60.740 66.667 0.00 0.00 0.00 3.86
331 332 1.735920 GAGGCACAGTCGCACTCAG 60.736 63.158 0.00 0.00 32.61 3.35
332 333 2.340078 GAGGCACAGTCGCACTCA 59.660 61.111 0.00 0.00 32.61 3.41
333 334 2.807045 CGAGGCACAGTCGCACTC 60.807 66.667 0.00 0.00 0.00 3.51
334 335 1.802337 TAACGAGGCACAGTCGCACT 61.802 55.000 0.00 0.00 41.26 4.40
335 336 0.736325 ATAACGAGGCACAGTCGCAC 60.736 55.000 0.00 0.00 41.26 5.34
336 337 0.812549 TATAACGAGGCACAGTCGCA 59.187 50.000 0.00 0.00 41.26 5.10
337 338 2.052157 GATATAACGAGGCACAGTCGC 58.948 52.381 0.00 0.00 41.26 5.19
338 339 2.662700 GGATATAACGAGGCACAGTCG 58.337 52.381 0.00 0.00 43.25 4.18
339 340 2.034305 ACGGATATAACGAGGCACAGTC 59.966 50.000 6.32 0.00 34.93 3.51
340 341 2.029623 ACGGATATAACGAGGCACAGT 58.970 47.619 6.32 0.00 34.93 3.55
341 342 2.607282 GGACGGATATAACGAGGCACAG 60.607 54.545 6.32 0.00 34.93 3.66
342 343 1.338973 GGACGGATATAACGAGGCACA 59.661 52.381 6.32 0.00 34.93 4.57
343 344 1.336609 GGGACGGATATAACGAGGCAC 60.337 57.143 6.32 0.00 34.93 5.01
344 345 0.963962 GGGACGGATATAACGAGGCA 59.036 55.000 6.32 0.00 34.93 4.75
345 346 0.963962 TGGGACGGATATAACGAGGC 59.036 55.000 6.32 0.00 34.93 4.70
346 347 1.068748 CGTGGGACGGATATAACGAGG 60.069 57.143 6.32 0.00 38.08 4.63
347 348 2.327081 CGTGGGACGGATATAACGAG 57.673 55.000 6.32 0.00 38.08 4.18
348 349 3.411446 ATACGTGGGACGGATATAACGA 58.589 45.455 0.00 0.00 44.56 3.85
349 350 3.837213 ATACGTGGGACGGATATAACG 57.163 47.619 0.00 0.00 44.56 3.18
350 351 4.439289 GCCTATACGTGGGACGGATATAAC 60.439 50.000 0.00 0.00 44.56 1.89
351 352 3.696051 GCCTATACGTGGGACGGATATAA 59.304 47.826 0.00 0.00 44.56 0.98
352 353 3.282021 GCCTATACGTGGGACGGATATA 58.718 50.000 0.00 0.00 44.56 0.86
353 354 2.097825 GCCTATACGTGGGACGGATAT 58.902 52.381 0.00 0.00 44.56 1.63
354 355 1.538047 GCCTATACGTGGGACGGATA 58.462 55.000 0.00 1.32 44.56 2.59
359 360 1.183676 ATCCGGCCTATACGTGGGAC 61.184 60.000 0.00 0.00 0.00 4.46
360 361 0.405198 TATCCGGCCTATACGTGGGA 59.595 55.000 0.00 0.00 0.00 4.37
361 362 1.136305 CATATCCGGCCTATACGTGGG 59.864 57.143 0.00 0.00 0.00 4.61
362 363 2.097036 TCATATCCGGCCTATACGTGG 58.903 52.381 0.00 0.00 0.00 4.94
363 364 3.014623 TCTCATATCCGGCCTATACGTG 58.985 50.000 0.00 0.00 0.00 4.49
364 365 3.361281 TCTCATATCCGGCCTATACGT 57.639 47.619 0.00 0.00 0.00 3.57
365 366 4.713824 TTTCTCATATCCGGCCTATACG 57.286 45.455 0.00 0.00 0.00 3.06
366 367 5.978814 ACATTTCTCATATCCGGCCTATAC 58.021 41.667 0.00 0.00 0.00 1.47
367 368 5.163550 CGACATTTCTCATATCCGGCCTATA 60.164 44.000 0.00 0.00 0.00 1.31
368 369 4.382040 CGACATTTCTCATATCCGGCCTAT 60.382 45.833 0.00 0.00 0.00 2.57
369 370 3.056821 CGACATTTCTCATATCCGGCCTA 60.057 47.826 0.00 0.00 0.00 3.93
370 371 2.289072 CGACATTTCTCATATCCGGCCT 60.289 50.000 0.00 0.00 0.00 5.19
371 372 2.069273 CGACATTTCTCATATCCGGCC 58.931 52.381 0.00 0.00 0.00 6.13
372 373 2.069273 CCGACATTTCTCATATCCGGC 58.931 52.381 0.00 0.00 0.00 6.13
373 374 3.243737 TGACCGACATTTCTCATATCCGG 60.244 47.826 0.00 0.00 41.24 5.14
374 375 3.977427 TGACCGACATTTCTCATATCCG 58.023 45.455 0.00 0.00 0.00 4.18
375 376 4.985409 GTCTGACCGACATTTCTCATATCC 59.015 45.833 0.00 0.00 42.37 2.59
376 377 4.985409 GGTCTGACCGACATTTCTCATATC 59.015 45.833 11.71 0.00 44.68 1.63
377 378 4.950050 GGTCTGACCGACATTTCTCATAT 58.050 43.478 11.71 0.00 44.68 1.78
378 379 4.386867 GGTCTGACCGACATTTCTCATA 57.613 45.455 11.71 0.00 44.68 2.15
379 380 3.252974 GGTCTGACCGACATTTCTCAT 57.747 47.619 11.71 0.00 44.68 2.90
380 381 2.743636 GGTCTGACCGACATTTCTCA 57.256 50.000 11.71 0.00 44.68 3.27
391 392 0.036306 ACCAAATGACCGGTCTGACC 59.964 55.000 33.39 16.99 34.05 4.02
392 393 1.156736 CACCAAATGACCGGTCTGAC 58.843 55.000 33.39 10.25 31.41 3.51
393 394 0.762418 ACACCAAATGACCGGTCTGA 59.238 50.000 33.39 16.65 31.41 3.27
394 395 0.874390 CACACCAAATGACCGGTCTG 59.126 55.000 33.39 23.93 31.41 3.51
395 396 0.889186 GCACACCAAATGACCGGTCT 60.889 55.000 33.39 17.38 31.41 3.85
396 397 1.579429 GCACACCAAATGACCGGTC 59.421 57.895 28.17 28.17 31.41 4.79
397 398 2.258013 CGCACACCAAATGACCGGT 61.258 57.895 6.92 6.92 35.27 5.28
398 399 1.511318 TTCGCACACCAAATGACCGG 61.511 55.000 0.00 0.00 0.00 5.28
399 400 0.110238 CTTCGCACACCAAATGACCG 60.110 55.000 0.00 0.00 0.00 4.79
400 401 1.197721 CTCTTCGCACACCAAATGACC 59.802 52.381 0.00 0.00 0.00 4.02
401 402 1.197721 CCTCTTCGCACACCAAATGAC 59.802 52.381 0.00 0.00 0.00 3.06
402 403 1.202758 ACCTCTTCGCACACCAAATGA 60.203 47.619 0.00 0.00 0.00 2.57
403 404 1.197721 GACCTCTTCGCACACCAAATG 59.802 52.381 0.00 0.00 0.00 2.32
404 405 1.523758 GACCTCTTCGCACACCAAAT 58.476 50.000 0.00 0.00 0.00 2.32
405 406 0.878523 CGACCTCTTCGCACACCAAA 60.879 55.000 0.00 0.00 41.87 3.28
406 407 1.300620 CGACCTCTTCGCACACCAA 60.301 57.895 0.00 0.00 41.87 3.67
407 408 2.338620 CGACCTCTTCGCACACCA 59.661 61.111 0.00 0.00 41.87 4.17
415 416 0.464452 CCATACCCACCGACCTCTTC 59.536 60.000 0.00 0.00 0.00 2.87
416 417 0.981277 CCCATACCCACCGACCTCTT 60.981 60.000 0.00 0.00 0.00 2.85
417 418 1.382695 CCCATACCCACCGACCTCT 60.383 63.158 0.00 0.00 0.00 3.69
418 419 1.683418 GACCCATACCCACCGACCTC 61.683 65.000 0.00 0.00 0.00 3.85
419 420 1.688187 GACCCATACCCACCGACCT 60.688 63.158 0.00 0.00 0.00 3.85
420 421 2.738938 GGACCCATACCCACCGACC 61.739 68.421 0.00 0.00 0.00 4.79
421 422 2.905681 GGACCCATACCCACCGAC 59.094 66.667 0.00 0.00 0.00 4.79
422 423 2.760799 CGGACCCATACCCACCGA 60.761 66.667 0.00 0.00 45.31 4.69
423 424 3.857038 CCGGACCCATACCCACCG 61.857 72.222 0.00 0.00 42.67 4.94
424 425 2.303282 AACCGGACCCATACCCACC 61.303 63.158 9.46 0.00 0.00 4.61
425 426 1.078001 CAACCGGACCCATACCCAC 60.078 63.158 9.46 0.00 0.00 4.61
426 427 0.252604 TACAACCGGACCCATACCCA 60.253 55.000 9.46 0.00 0.00 4.51
427 428 0.466963 CTACAACCGGACCCATACCC 59.533 60.000 9.46 0.00 0.00 3.69
428 429 1.488390 TCTACAACCGGACCCATACC 58.512 55.000 9.46 0.00 0.00 2.73
429 430 2.805657 GCATCTACAACCGGACCCATAC 60.806 54.545 9.46 0.00 0.00 2.39
514 515 2.352030 CGGTGGTACTACGTGACATTGT 60.352 50.000 0.00 0.00 0.00 2.71
595 611 4.077188 GTCGCGTTGCACTGCCTC 62.077 66.667 5.77 0.00 0.00 4.70
776 2335 1.606350 GAGTGAACGCTCGTGAACGG 61.606 60.000 2.59 0.00 40.29 4.44
777 2336 1.606350 GGAGTGAACGCTCGTGAACG 61.606 60.000 8.87 0.00 36.41 3.95
800 2359 1.181786 GGGGAGTGAGTCAGTGAGAG 58.818 60.000 4.86 0.00 0.00 3.20
801 2360 0.780637 AGGGGAGTGAGTCAGTGAGA 59.219 55.000 4.86 0.00 0.00 3.27
823 2386 1.064389 GTGGGGATTGGGGAAGAAGAG 60.064 57.143 0.00 0.00 0.00 2.85
870 2447 2.202676 GCTCGGCGAGACTGAAGG 60.203 66.667 38.56 12.63 31.65 3.46
889 2466 3.353029 CATCACCCACGCAACGCA 61.353 61.111 0.00 0.00 0.00 5.24
890 2467 4.101790 CCATCACCCACGCAACGC 62.102 66.667 0.00 0.00 0.00 4.84
891 2468 4.101790 GCCATCACCCACGCAACG 62.102 66.667 0.00 0.00 0.00 4.10
892 2469 4.101790 CGCCATCACCCACGCAAC 62.102 66.667 0.00 0.00 0.00 4.17
893 2470 4.634703 ACGCCATCACCCACGCAA 62.635 61.111 0.00 0.00 0.00 4.85
1123 2707 2.772622 CCTCCCGCCATACCCCTT 60.773 66.667 0.00 0.00 0.00 3.95
1126 2710 3.242291 CCTCCTCCCGCCATACCC 61.242 72.222 0.00 0.00 0.00 3.69
1527 3111 3.560481 GCTTCTTATAAGCTTCGGGTTCC 59.440 47.826 0.00 0.00 40.01 3.62
1539 3123 1.675552 GCAAGGCGGGCTTCTTATAA 58.324 50.000 14.52 0.00 0.00 0.98
1543 3127 2.137177 TTAGGCAAGGCGGGCTTCTT 62.137 55.000 14.52 8.41 44.09 2.52
1545 3129 2.045340 TTAGGCAAGGCGGGCTTC 60.045 61.111 14.52 9.17 44.09 3.86
1686 3270 3.790437 CTCATCCCTGGCTGCGGT 61.790 66.667 0.00 0.00 0.00 5.68
1724 3308 3.312890 CTGTCCCCTATTCTGTCCTGAT 58.687 50.000 0.00 0.00 0.00 2.90
1726 3310 1.139853 GCTGTCCCCTATTCTGTCCTG 59.860 57.143 0.00 0.00 0.00 3.86
2028 3612 2.667536 CAGTGCAGCGGCTTCAGT 60.668 61.111 10.92 2.97 41.91 3.41
2122 3706 2.245028 AGTATACTCCAGAGGCAGTGGA 59.755 50.000 0.00 7.54 42.06 4.02
2127 3711 5.957771 AAATGAAGTATACTCCAGAGGCA 57.042 39.130 5.70 0.00 0.00 4.75
2128 3712 7.671302 TGATAAATGAAGTATACTCCAGAGGC 58.329 38.462 5.70 0.00 0.00 4.70
2184 3774 4.508461 TCAGAACGAAACGAATCCTGTA 57.492 40.909 0.00 0.00 0.00 2.74
2185 3775 3.380479 TCAGAACGAAACGAATCCTGT 57.620 42.857 0.00 0.00 0.00 4.00
2186 3776 4.725556 TTTCAGAACGAAACGAATCCTG 57.274 40.909 0.00 0.00 38.72 3.86
2242 3832 3.644884 TCTCCTCGTTCACTCTGTTTC 57.355 47.619 0.00 0.00 0.00 2.78
2464 4055 2.166829 TGAAATGTGTGTGGGTATGGC 58.833 47.619 0.00 0.00 0.00 4.40
2466 4057 8.249638 TCATAAAATGAAATGTGTGTGGGTATG 58.750 33.333 0.00 0.00 36.11 2.39
2505 4096 2.749621 GGGTGATCGTTGAAAGCATTCT 59.250 45.455 3.03 0.00 36.48 2.40
2515 4106 2.511600 GGAGCCGGGTGATCGTTG 60.512 66.667 12.94 0.00 0.00 4.10
2516 4107 2.367202 ATGGAGCCGGGTGATCGTT 61.367 57.895 12.94 0.00 0.00 3.85
2517 4108 2.764128 ATGGAGCCGGGTGATCGT 60.764 61.111 12.94 0.00 0.00 3.73
2564 4155 3.371063 CTGCCTGGCCTGCACTTG 61.371 66.667 17.53 4.20 34.46 3.16
2583 4174 1.078567 CAGCTCAGTCCCAAGGCTC 60.079 63.158 0.00 0.00 0.00 4.70
2589 4180 2.203832 TCCAGCAGCTCAGTCCCA 60.204 61.111 0.00 0.00 0.00 4.37
2592 4183 0.810823 GCATCTCCAGCAGCTCAGTC 60.811 60.000 0.00 0.00 0.00 3.51
2652 4243 1.686052 GCATCCTCCCTGTACTCTCTG 59.314 57.143 0.00 0.00 0.00 3.35
2873 4464 3.792047 CACTGTCATGGCACGCCG 61.792 66.667 0.00 0.00 39.42 6.46
2934 4525 1.066430 ACGGCGCTTTAGATCTCCAAA 60.066 47.619 6.90 0.00 0.00 3.28
2939 4530 2.743938 CACATACGGCGCTTTAGATCT 58.256 47.619 6.90 0.00 0.00 2.75
2942 4533 0.808453 GGCACATACGGCGCTTTAGA 60.808 55.000 6.90 0.00 0.00 2.10
2979 4570 2.415491 GGTAAAGATCACAAAAGCGGCC 60.415 50.000 0.00 0.00 0.00 6.13
2985 4576 9.126151 TGACAGTAAATGGTAAAGATCACAAAA 57.874 29.630 0.00 0.00 0.00 2.44
3020 4634 1.117150 ATGATTGTGCCCAAGGATGC 58.883 50.000 0.00 0.00 33.17 3.91
3024 4638 2.726821 AGTACATGATTGTGCCCAAGG 58.273 47.619 0.00 0.00 39.07 3.61
3025 4639 5.357878 ACAATAGTACATGATTGTGCCCAAG 59.642 40.000 15.82 0.00 43.07 3.61
3056 4670 8.868522 AGAACACCTGAATCAATAATTTGAGA 57.131 30.769 0.00 0.00 44.75 3.27
3057 4671 9.918630 AAAGAACACCTGAATCAATAATTTGAG 57.081 29.630 0.00 0.00 44.75 3.02
3098 4712 7.447374 TGGTGAGTTGGTAAGTGATTATTTG 57.553 36.000 0.00 0.00 0.00 2.32
3112 4726 3.364460 TGGTAATGGATGGTGAGTTGG 57.636 47.619 0.00 0.00 0.00 3.77
3118 4732 3.068590 GCCTGAAATGGTAATGGATGGTG 59.931 47.826 0.00 0.00 0.00 4.17
3119 4733 3.299503 GCCTGAAATGGTAATGGATGGT 58.700 45.455 0.00 0.00 0.00 3.55
3120 4734 3.298619 TGCCTGAAATGGTAATGGATGG 58.701 45.455 0.00 0.00 0.00 3.51
3234 4848 4.675029 AAGGCGTGCGCGTTACCT 62.675 61.111 22.18 16.15 45.62 3.08
3243 4857 2.738521 TCGAGCTTGAAGGCGTGC 60.739 61.111 0.00 0.00 37.29 5.34
3258 4872 0.734253 CCAACTTGAGGAGCGAGTCG 60.734 60.000 8.54 8.54 40.45 4.18
3306 4920 0.463654 TGACAAAGTGCAGGAGCGTT 60.464 50.000 0.00 0.00 46.23 4.84
3321 4935 2.143876 TGGTGATCTCCTCGATGACA 57.856 50.000 14.65 0.00 37.90 3.58
3345 4959 1.423541 ACTACAATGTTGGCACCCTCA 59.576 47.619 0.00 0.00 0.00 3.86
3365 4979 1.140052 TGTCTTTCTTTGGGCTCGTGA 59.860 47.619 0.00 0.00 0.00 4.35
3377 4991 0.603975 GGCGCTCACCTTGTCTTTCT 60.604 55.000 7.64 0.00 0.00 2.52
3510 5124 0.109551 CTGAGAGCTTCGAGACGCAA 60.110 55.000 4.45 0.00 0.00 4.85
3585 5199 2.233007 GAAACCTCTTGCAGCGCTCG 62.233 60.000 7.13 4.46 0.00 5.03
3690 5304 0.617413 AGAACTCGGTCGTCTCCCTA 59.383 55.000 0.00 0.00 0.00 3.53
3786 5400 4.373116 TCCTTGCAGACGCGGTCC 62.373 66.667 12.47 0.00 42.97 4.46
3849 5463 4.736896 GTCTCCACCCGGCGTGAC 62.737 72.222 20.63 11.32 46.20 3.67
3930 5544 0.651042 GCGACTACGACGATGACGAG 60.651 60.000 0.00 0.00 41.06 4.18
3947 5561 2.434658 TATCATGGCTACTGGCGGCG 62.435 60.000 0.51 0.51 42.94 6.46
3952 5566 3.244215 ACATTCGGTATCATGGCTACTGG 60.244 47.826 12.45 4.57 0.00 4.00
3987 5602 4.824537 TCTAGACAGTAGCTAAGATGCAGG 59.175 45.833 0.00 0.00 34.99 4.85
4002 5617 1.189752 TTGCCTGCTCCTCTAGACAG 58.810 55.000 1.91 1.91 32.41 3.51
4091 5713 7.754027 GCGGAATCATGTACTACTACGATAATT 59.246 37.037 0.00 0.00 0.00 1.40
4093 5715 6.205270 TGCGGAATCATGTACTACTACGATAA 59.795 38.462 0.00 0.00 0.00 1.75
4154 5790 2.624838 CAGATGCCACTTTCACCTTTGT 59.375 45.455 0.00 0.00 0.00 2.83
4169 5805 5.756833 TGTCTGAATCATCATGTACAGATGC 59.243 40.000 21.12 10.59 41.98 3.91
4173 5809 5.758784 AGCATGTCTGAATCATCATGTACAG 59.241 40.000 20.65 0.00 39.54 2.74
4204 5840 5.521906 TGATCTACTAGTGCCAGTGATTC 57.478 43.478 5.39 0.00 0.00 2.52
4212 5848 6.458888 GCCAAAAGATTTGATCTACTAGTGCC 60.459 42.308 5.39 0.00 39.08 5.01
4270 5910 5.939883 TCATGTGATGGTTCTTTTAGACTGG 59.060 40.000 0.00 0.00 0.00 4.00
4326 5966 5.046591 AGGTTGTAGCTGCAGTGAGTAAATA 60.047 40.000 16.64 0.00 0.00 1.40
4327 5967 4.003648 GGTTGTAGCTGCAGTGAGTAAAT 58.996 43.478 16.64 0.00 0.00 1.40
4329 5969 2.632996 AGGTTGTAGCTGCAGTGAGTAA 59.367 45.455 16.64 2.17 0.00 2.24
4330 5970 2.248248 AGGTTGTAGCTGCAGTGAGTA 58.752 47.619 16.64 0.00 0.00 2.59
4331 5971 1.051812 AGGTTGTAGCTGCAGTGAGT 58.948 50.000 16.64 0.31 0.00 3.41
4332 5972 2.175878 AAGGTTGTAGCTGCAGTGAG 57.824 50.000 16.64 0.00 0.00 3.51
4333 5973 2.158827 TGAAAGGTTGTAGCTGCAGTGA 60.159 45.455 16.64 0.00 0.00 3.41
4334 5974 2.221169 TGAAAGGTTGTAGCTGCAGTG 58.779 47.619 16.64 0.00 0.00 3.66
4418 6058 0.683973 CACTGCCTTCAGGTCAGAGT 59.316 55.000 18.57 4.47 44.54 3.24
4435 6075 4.965200 AAGATAGAGGCCATTAGGTCAC 57.035 45.455 5.01 0.00 43.99 3.67
4438 6078 5.717119 AACAAAGATAGAGGCCATTAGGT 57.283 39.130 5.01 0.00 37.19 3.08
4489 6129 9.618890 GGCACTGTCCATTGATTATATATGTAT 57.381 33.333 0.00 0.00 0.00 2.29
4548 6188 8.855804 AGTAGTGGGATATATAATAACCCCAG 57.144 38.462 7.66 0.00 43.75 4.45
4671 6318 2.473576 ACTAGTGGGAGATGTACCCC 57.526 55.000 0.00 0.00 46.21 4.95
4913 6560 4.769345 TCACCATACCACATTGCTGATA 57.231 40.909 0.00 0.00 0.00 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.