Multiple sequence alignment - TraesCS5A01G304200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G304200 chr5A 100.000 8407 0 0 1 8407 512835071 512826665 0.000000e+00 15525.0
1 TraesCS5A01G304200 chr5A 86.441 708 66 21 14 702 653372442 653371746 0.000000e+00 749.0
2 TraesCS5A01G304200 chr5A 78.363 171 24 7 8210 8377 695739434 695739594 1.930000e-16 99.0
3 TraesCS5A01G304200 chr5A 77.059 170 27 6 8210 8377 695696503 695696662 4.180000e-13 87.9
4 TraesCS5A01G304200 chr5A 83.333 78 8 4 6342 6417 408833238 408833164 5.450000e-07 67.6
5 TraesCS5A01G304200 chr5A 83.784 74 7 4 6340 6413 430469136 430469068 1.960000e-06 65.8
6 TraesCS5A01G304200 chr5A 95.000 40 2 0 3795 3834 623220413 623220374 7.040000e-06 63.9
7 TraesCS5A01G304200 chr5B 94.873 5227 170 32 1898 7086 488613406 488608240 0.000000e+00 8078.0
8 TraesCS5A01G304200 chr5B 94.872 5187 181 38 1661 6817 488613613 488608482 0.000000e+00 8026.0
9 TraesCS5A01G304200 chr5B 88.394 1258 85 18 7114 8342 488607937 488606712 0.000000e+00 1458.0
10 TraesCS5A01G304200 chr5B 93.914 723 19 10 942 1653 488614394 488613686 0.000000e+00 1068.0
11 TraesCS5A01G304200 chr5B 94.000 150 9 0 724 873 488614945 488614796 2.360000e-55 228.0
12 TraesCS5A01G304200 chr5B 85.161 155 21 2 3745 3898 488611383 488611536 3.140000e-34 158.0
13 TraesCS5A01G304200 chr5B 89.091 55 3 2 3025 3077 248031119 248031066 1.960000e-06 65.8
14 TraesCS5A01G304200 chr5B 89.091 55 3 2 3025 3077 248266541 248266488 1.960000e-06 65.8
15 TraesCS5A01G304200 chr5D 98.027 3143 50 7 1898 5037 407529296 407526163 0.000000e+00 5450.0
16 TraesCS5A01G304200 chr5D 96.988 2988 50 10 4810 7795 407526167 407523218 0.000000e+00 4983.0
17 TraesCS5A01G304200 chr5D 95.582 1177 25 14 724 1882 407530449 407529282 0.000000e+00 1860.0
18 TraesCS5A01G304200 chr5D 92.702 644 45 2 10 652 168014290 168013648 0.000000e+00 928.0
19 TraesCS5A01G304200 chr5D 90.374 696 63 4 10 702 8529525 8528831 0.000000e+00 911.0
20 TraesCS5A01G304200 chr5D 87.394 706 63 13 14 702 561490903 561491599 0.000000e+00 787.0
21 TraesCS5A01G304200 chr5D 91.241 274 17 2 8031 8302 407522250 407521982 4.790000e-97 366.0
22 TraesCS5A01G304200 chr5D 94.118 187 8 2 7819 8002 407523225 407523039 1.790000e-71 281.0
23 TraesCS5A01G304200 chr5D 96.078 51 2 0 3855 3905 547716644 547716694 5.410000e-12 84.2
24 TraesCS5A01G304200 chr5D 91.228 57 3 1 3852 3908 539963231 539963177 9.050000e-10 76.8
25 TraesCS5A01G304200 chr6B 85.516 1298 155 18 5068 6345 664265008 664266292 0.000000e+00 1325.0
26 TraesCS5A01G304200 chr6B 86.981 699 68 12 23 702 225014579 225013885 0.000000e+00 765.0
27 TraesCS5A01G304200 chr6B 85.832 727 88 11 2589 3308 664257050 664257768 0.000000e+00 758.0
28 TraesCS5A01G304200 chr6B 80.787 635 83 17 4239 4864 664258340 664258944 2.140000e-125 460.0
29 TraesCS5A01G304200 chr6B 82.380 437 42 14 6579 7012 664266602 664267006 1.740000e-91 348.0
30 TraesCS5A01G304200 chr6B 93.578 109 3 2 2452 2556 664256859 664256967 8.730000e-35 159.0
31 TraesCS5A01G304200 chr6B 86.777 121 15 1 6452 6571 664266330 664266450 5.290000e-27 134.0
32 TraesCS5A01G304200 chr6B 81.457 151 21 4 1008 1153 664256280 664256428 5.330000e-22 117.0
33 TraesCS5A01G304200 chr6B 94.340 53 1 2 3853 3904 534516745 534516796 7.000000e-11 80.5
34 TraesCS5A01G304200 chr6B 92.500 40 3 0 6388 6427 133842781 133842742 3.280000e-04 58.4
35 TraesCS5A01G304200 chr6B 97.059 34 0 1 8333 8365 1010304 1010337 1.000000e-03 56.5
36 TraesCS5A01G304200 chr6A 85.182 1316 160 21 5050 6341 587813855 587815159 0.000000e+00 1317.0
37 TraesCS5A01G304200 chr6A 82.504 703 92 23 2612 3308 587808475 587809152 9.400000e-164 588.0
38 TraesCS5A01G304200 chr6A 81.878 607 72 19 4270 4871 587809871 587810444 2.120000e-130 477.0
39 TraesCS5A01G304200 chr6A 83.410 434 38 13 6579 7009 587815447 587815849 1.030000e-98 372.0
40 TraesCS5A01G304200 chr6A 89.041 146 7 3 2420 2556 587808254 587808399 1.120000e-38 172.0
41 TraesCS5A01G304200 chr6A 72.835 589 94 42 1008 1574 587807521 587808065 3.160000e-29 141.0
42 TraesCS5A01G304200 chr6A 81.022 137 22 3 3627 3759 587809718 587809854 1.150000e-18 106.0
43 TraesCS5A01G304200 chr6A 94.340 53 2 1 3853 3904 496841961 496842013 7.000000e-11 80.5
44 TraesCS5A01G304200 chr6A 97.500 40 1 0 3758 3797 60232390 60232429 1.510000e-07 69.4
45 TraesCS5A01G304200 chr6A 94.444 36 2 0 3751 3786 88080303 88080338 1.000000e-03 56.5
46 TraesCS5A01G304200 chr6D 82.791 1290 165 23 5073 6336 438921257 438922515 0.000000e+00 1099.0
47 TraesCS5A01G304200 chr6D 83.657 722 80 23 2589 3308 438914275 438914960 0.000000e+00 645.0
48 TraesCS5A01G304200 chr6D 83.721 473 55 9 4288 4752 438915448 438915906 2.170000e-115 427.0
49 TraesCS5A01G304200 chr6D 83.641 434 37 14 6579 7009 438922992 438923394 2.220000e-100 377.0
50 TraesCS5A01G304200 chr6D 87.285 291 33 4 3339 3627 438915079 438915367 6.290000e-86 329.0
51 TraesCS5A01G304200 chr6D 96.629 89 3 0 2454 2542 438914086 438914174 1.890000e-31 148.0
52 TraesCS5A01G304200 chr6D 86.486 74 6 3 6344 6416 462210722 462210652 2.520000e-10 78.7
53 TraesCS5A01G304200 chr6D 88.889 54 2 3 3025 3075 260658761 260658709 7.040000e-06 63.9
54 TraesCS5A01G304200 chr6D 94.444 36 2 0 3751 3786 71537423 71537458 1.000000e-03 56.5
55 TraesCS5A01G304200 chr6D 86.275 51 3 3 3795 3842 200865454 200865405 1.500000e-02 52.8
56 TraesCS5A01G304200 chr7D 90.704 710 48 7 10 702 75958728 75958020 0.000000e+00 929.0
57 TraesCS5A01G304200 chr7D 91.808 647 48 4 6 652 489451471 489452112 0.000000e+00 896.0
58 TraesCS5A01G304200 chr7D 100.000 37 0 0 3756 3792 514070475 514070439 1.510000e-07 69.4
59 TraesCS5A01G304200 chr7D 100.000 28 0 0 3831 3858 634890896 634890923 1.500000e-02 52.8
60 TraesCS5A01G304200 chr3D 92.236 644 44 5 9 652 523901718 523902355 0.000000e+00 907.0
61 TraesCS5A01G304200 chr3D 91.821 648 52 1 5 652 435289977 435290623 0.000000e+00 902.0
62 TraesCS5A01G304200 chr3D 92.056 642 47 4 13 652 611660301 611659662 0.000000e+00 900.0
63 TraesCS5A01G304200 chr1D 90.113 708 49 9 12 702 452692108 452692811 0.000000e+00 900.0
64 TraesCS5A01G304200 chr1D 84.777 716 56 29 15 711 489983983 489983302 0.000000e+00 669.0
65 TraesCS5A01G304200 chr1D 87.059 85 8 3 6333 6415 309854004 309853921 8.990000e-15 93.5
66 TraesCS5A01G304200 chr1D 100.000 30 0 0 8333 8362 99694248 99694277 1.000000e-03 56.5
67 TraesCS5A01G304200 chr2A 89.776 714 53 9 6 702 603766364 603765654 0.000000e+00 896.0
68 TraesCS5A01G304200 chr4B 88.652 705 58 11 17 702 348219739 348219038 0.000000e+00 839.0
69 TraesCS5A01G304200 chr4B 88.971 680 51 11 4211 4875 662609848 662610518 0.000000e+00 819.0
70 TraesCS5A01G304200 chr3B 84.930 710 62 14 10 702 105587863 105588544 0.000000e+00 676.0
71 TraesCS5A01G304200 chr3B 100.000 28 0 0 3831 3858 157237654 157237627 1.500000e-02 52.8
72 TraesCS5A01G304200 chr2B 84.473 702 62 15 18 702 567589753 567590424 0.000000e+00 649.0
73 TraesCS5A01G304200 chr2B 96.970 33 0 1 3831 3863 753824061 753824092 4.000000e-03 54.7
74 TraesCS5A01G304200 chr2D 82.000 650 70 14 71 703 131276165 131276784 7.530000e-140 508.0
75 TraesCS5A01G304200 chr1B 96.364 55 1 1 3852 3905 571427541 571427595 1.160000e-13 89.8
76 TraesCS5A01G304200 chr1B 84.416 77 5 5 6342 6417 544785605 544785535 1.510000e-07 69.4
77 TraesCS5A01G304200 chr1B 97.222 36 1 0 3769 3804 24741481 24741516 2.530000e-05 62.1
78 TraesCS5A01G304200 chr1A 94.545 55 3 0 3852 3906 587861355 587861301 1.500000e-12 86.1
79 TraesCS5A01G304200 chr1A 95.652 46 2 0 3752 3797 568396077 568396122 3.250000e-09 75.0
80 TraesCS5A01G304200 chr1A 100.000 28 0 0 3831 3858 583884710 583884683 1.500000e-02 52.8
81 TraesCS5A01G304200 chr4A 88.525 61 7 0 6336 6396 640214996 640215056 3.250000e-09 75.0
82 TraesCS5A01G304200 chr4A 82.716 81 10 4 8284 8362 595295431 595295509 1.510000e-07 69.4
83 TraesCS5A01G304200 chr4A 83.333 78 8 4 6341 6416 683425806 683425880 5.450000e-07 67.6
84 TraesCS5A01G304200 chr4D 87.931 58 5 2 3025 3080 268915028 268914971 5.450000e-07 67.6
85 TraesCS5A01G304200 chrUn 97.222 36 1 0 3769 3804 376297021 376297056 2.530000e-05 62.1
86 TraesCS5A01G304200 chr3A 96.774 31 1 0 3752 3782 380917365 380917395 1.500000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G304200 chr5A 512826665 512835071 8406 True 15525.000000 15525 100.000000 1 8407 1 chr5A.!!$R3 8406
1 TraesCS5A01G304200 chr5A 653371746 653372442 696 True 749.000000 749 86.441000 14 702 1 chr5A.!!$R5 688
2 TraesCS5A01G304200 chr5B 488606712 488613406 6694 True 4768.000000 8078 91.633500 1898 8342 2 chr5B.!!$R3 6444
3 TraesCS5A01G304200 chr5B 488608482 488614945 6463 True 3107.333333 8026 94.262000 724 6817 3 chr5B.!!$R4 6093
4 TraesCS5A01G304200 chr5D 407521982 407530449 8467 True 2588.000000 5450 95.191200 724 8302 5 chr5D.!!$R4 7578
5 TraesCS5A01G304200 chr5D 168013648 168014290 642 True 928.000000 928 92.702000 10 652 1 chr5D.!!$R2 642
6 TraesCS5A01G304200 chr5D 8528831 8529525 694 True 911.000000 911 90.374000 10 702 1 chr5D.!!$R1 692
7 TraesCS5A01G304200 chr5D 561490903 561491599 696 False 787.000000 787 87.394000 14 702 1 chr5D.!!$F2 688
8 TraesCS5A01G304200 chr6B 225013885 225014579 694 True 765.000000 765 86.981000 23 702 1 chr6B.!!$R2 679
9 TraesCS5A01G304200 chr6B 664265008 664267006 1998 False 602.333333 1325 84.891000 5068 7012 3 chr6B.!!$F4 1944
10 TraesCS5A01G304200 chr6B 664256280 664258944 2664 False 373.500000 758 85.413500 1008 4864 4 chr6B.!!$F3 3856
11 TraesCS5A01G304200 chr6A 587807521 587815849 8328 False 453.285714 1317 82.267429 1008 7009 7 chr6A.!!$F4 6001
12 TraesCS5A01G304200 chr6D 438921257 438923394 2137 False 738.000000 1099 83.216000 5073 7009 2 chr6D.!!$F3 1936
13 TraesCS5A01G304200 chr6D 438914086 438915906 1820 False 387.250000 645 87.823000 2454 4752 4 chr6D.!!$F2 2298
14 TraesCS5A01G304200 chr7D 75958020 75958728 708 True 929.000000 929 90.704000 10 702 1 chr7D.!!$R1 692
15 TraesCS5A01G304200 chr7D 489451471 489452112 641 False 896.000000 896 91.808000 6 652 1 chr7D.!!$F1 646
16 TraesCS5A01G304200 chr3D 523901718 523902355 637 False 907.000000 907 92.236000 9 652 1 chr3D.!!$F2 643
17 TraesCS5A01G304200 chr3D 435289977 435290623 646 False 902.000000 902 91.821000 5 652 1 chr3D.!!$F1 647
18 TraesCS5A01G304200 chr3D 611659662 611660301 639 True 900.000000 900 92.056000 13 652 1 chr3D.!!$R1 639
19 TraesCS5A01G304200 chr1D 452692108 452692811 703 False 900.000000 900 90.113000 12 702 1 chr1D.!!$F2 690
20 TraesCS5A01G304200 chr1D 489983302 489983983 681 True 669.000000 669 84.777000 15 711 1 chr1D.!!$R2 696
21 TraesCS5A01G304200 chr2A 603765654 603766364 710 True 896.000000 896 89.776000 6 702 1 chr2A.!!$R1 696
22 TraesCS5A01G304200 chr4B 348219038 348219739 701 True 839.000000 839 88.652000 17 702 1 chr4B.!!$R1 685
23 TraesCS5A01G304200 chr4B 662609848 662610518 670 False 819.000000 819 88.971000 4211 4875 1 chr4B.!!$F1 664
24 TraesCS5A01G304200 chr3B 105587863 105588544 681 False 676.000000 676 84.930000 10 702 1 chr3B.!!$F1 692
25 TraesCS5A01G304200 chr2B 567589753 567590424 671 False 649.000000 649 84.473000 18 702 1 chr2B.!!$F1 684
26 TraesCS5A01G304200 chr2D 131276165 131276784 619 False 508.000000 508 82.000000 71 703 1 chr2D.!!$F1 632

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
749 828 1.153168 ATCCTGCATTTCCCCGACG 60.153 57.895 0.00 0.00 0.00 5.12 F
2157 2691 0.793250 GCGCAGGAGAAGTTCAGTTC 59.207 55.000 0.30 0.00 0.00 3.01 F
2222 2757 1.372087 GGTTGCTCTCAGGATTGCCG 61.372 60.000 0.00 0.00 39.96 5.69 F
2948 3571 3.350833 AGGCAATCAAGGTTCATGAGAC 58.649 45.455 0.00 0.00 0.00 3.36 F
3123 3749 3.846360 ACTATAACGTGGTCTTGTCAGC 58.154 45.455 0.00 0.00 0.00 4.26 F
5002 9415 1.414919 ACACGTAGTTTTCTGCTCCCA 59.585 47.619 0.00 0.00 41.61 4.37 F
5962 10410 0.957395 ATTCCCGTGCACTGCAGAAG 60.957 55.000 23.35 13.61 40.08 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2230 2765 3.149981 CAACCCCTTTCTCTCCTTCAAC 58.850 50.000 0.00 0.00 0.00 3.18 R
4117 5012 5.808366 AATACCACTGAGAACAAGAGACA 57.192 39.130 0.00 0.00 0.00 3.41 R
4333 5233 4.521130 TCTAGATGGCATCGGAATACAC 57.479 45.455 21.01 0.00 0.00 2.90 R
4843 5763 3.358707 TGACAACTGAGCATTGCAAAG 57.641 42.857 11.91 9.96 0.00 2.77 R
5186 9599 4.702612 TCCACACTTCTTAAGTTTGCAACA 59.297 37.500 0.00 0.00 40.46 3.33 R
6185 10633 0.398522 ATGGAGGGCACATCGGACTA 60.399 55.000 0.00 0.00 0.00 2.59 R
7804 12873 0.464554 GCAAGAGCCCACCACCTATC 60.465 60.000 0.00 0.00 33.58 2.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 1.825622 TTTGCACATCGCCCACACA 60.826 52.632 0.00 0.00 41.33 3.72
106 107 5.696270 GCCACGTATGAATAGATGACATCAA 59.304 40.000 17.57 0.00 0.00 2.57
269 278 2.300956 TTTGCCCAGAAGTTGCCATA 57.699 45.000 0.00 0.00 0.00 2.74
553 614 7.250569 AGTTAAAACATATGATGGCAACTTCG 58.749 34.615 10.38 0.00 43.43 3.79
602 664 8.851145 TGTGTAATAGACATGGCAACTTTTAAA 58.149 29.630 0.00 0.00 41.14 1.52
652 715 9.905171 TCGATATGAGATCTAGTTTCAAAGATG 57.095 33.333 0.00 0.00 32.60 2.90
653 716 9.138062 CGATATGAGATCTAGTTTCAAAGATGG 57.862 37.037 0.00 0.00 32.60 3.51
714 793 7.948278 AAGAGATAAAACGGATCTTAATCGG 57.052 36.000 0.00 0.00 38.01 4.18
715 794 7.286215 AGAGATAAAACGGATCTTAATCGGA 57.714 36.000 0.00 0.00 36.14 4.55
716 795 7.897864 AGAGATAAAACGGATCTTAATCGGAT 58.102 34.615 0.00 0.00 36.14 4.18
717 796 8.368668 AGAGATAAAACGGATCTTAATCGGATT 58.631 33.333 8.49 8.49 36.14 3.01
718 797 8.904099 AGATAAAACGGATCTTAATCGGATTT 57.096 30.769 8.76 4.03 39.18 2.17
719 798 9.338622 AGATAAAACGGATCTTAATCGGATTTT 57.661 29.630 8.76 0.00 37.89 1.82
720 799 9.382244 GATAAAACGGATCTTAATCGGATTTTG 57.618 33.333 8.76 2.79 37.89 2.44
721 800 4.813296 ACGGATCTTAATCGGATTTTGC 57.187 40.909 8.76 0.00 36.14 3.68
722 801 3.247648 ACGGATCTTAATCGGATTTTGCG 59.752 43.478 8.76 10.69 36.14 4.85
735 814 2.463589 TTTTGCGAGCGTCCCATCCT 62.464 55.000 0.00 0.00 0.00 3.24
749 828 1.153168 ATCCTGCATTTCCCCGACG 60.153 57.895 0.00 0.00 0.00 5.12
806 885 1.605058 AACCGTCGGATCTCACTGGG 61.605 60.000 20.51 0.00 0.00 4.45
881 960 1.482748 TTCCGTAACCACCACCTCCC 61.483 60.000 0.00 0.00 0.00 4.30
883 962 2.963101 CGTAACCACCACCTCCCCC 61.963 68.421 0.00 0.00 0.00 5.40
900 982 2.360585 CCTTTGCCCCCTTCCCTC 59.639 66.667 0.00 0.00 0.00 4.30
932 1014 2.206900 TGCTTGTCCCTCCCCTCA 59.793 61.111 0.00 0.00 0.00 3.86
934 1016 2.972819 GCTTGTCCCTCCCCTCACC 61.973 68.421 0.00 0.00 0.00 4.02
937 1019 2.365768 GTCCCTCCCCTCACCCTC 60.366 72.222 0.00 0.00 0.00 4.30
938 1020 2.540910 TCCCTCCCCTCACCCTCT 60.541 66.667 0.00 0.00 0.00 3.69
939 1021 2.041405 CCCTCCCCTCACCCTCTC 60.041 72.222 0.00 0.00 0.00 3.20
940 1022 2.041405 CCTCCCCTCACCCTCTCC 60.041 72.222 0.00 0.00 0.00 3.71
1044 1464 4.048470 GGGTTCCTCCTGCCCACC 62.048 72.222 0.00 0.00 41.93 4.61
1695 2221 6.536941 GGAAGAACTCTGTTCCTGATACATTC 59.463 42.308 6.80 2.73 40.98 2.67
1727 2253 1.064505 CTTAGCAATGGCCATCACACG 59.935 52.381 21.08 6.69 42.56 4.49
1852 2378 8.610248 TTTACTGATTGAATTGAAGTACGGAA 57.390 30.769 0.00 0.00 0.00 4.30
1867 2393 5.014858 AGTACGGAAGAGAGGATTGTAACA 58.985 41.667 0.00 0.00 0.00 2.41
1868 2394 4.457834 ACGGAAGAGAGGATTGTAACAG 57.542 45.455 0.00 0.00 0.00 3.16
1869 2395 3.190874 CGGAAGAGAGGATTGTAACAGC 58.809 50.000 0.00 0.00 0.00 4.40
1870 2396 3.368427 CGGAAGAGAGGATTGTAACAGCA 60.368 47.826 0.00 0.00 0.00 4.41
1871 2397 4.681781 CGGAAGAGAGGATTGTAACAGCAT 60.682 45.833 0.00 0.00 0.00 3.79
1872 2398 5.189180 GGAAGAGAGGATTGTAACAGCATT 58.811 41.667 0.00 0.00 0.00 3.56
1873 2399 5.649831 GGAAGAGAGGATTGTAACAGCATTT 59.350 40.000 0.00 0.00 0.00 2.32
1874 2400 6.183360 GGAAGAGAGGATTGTAACAGCATTTC 60.183 42.308 0.00 0.00 0.00 2.17
1875 2401 5.809001 AGAGAGGATTGTAACAGCATTTCA 58.191 37.500 0.00 0.00 0.00 2.69
1876 2402 6.421485 AGAGAGGATTGTAACAGCATTTCAT 58.579 36.000 0.00 0.00 0.00 2.57
1877 2403 6.888632 AGAGAGGATTGTAACAGCATTTCATT 59.111 34.615 0.00 0.00 0.00 2.57
1878 2404 7.395489 AGAGAGGATTGTAACAGCATTTCATTT 59.605 33.333 0.00 0.00 0.00 2.32
1879 2405 7.318141 AGAGGATTGTAACAGCATTTCATTTG 58.682 34.615 0.00 0.00 0.00 2.32
1880 2406 7.177216 AGAGGATTGTAACAGCATTTCATTTGA 59.823 33.333 0.00 0.00 0.00 2.69
1881 2407 7.844009 AGGATTGTAACAGCATTTCATTTGAT 58.156 30.769 0.00 0.00 0.00 2.57
1882 2408 8.316214 AGGATTGTAACAGCATTTCATTTGATT 58.684 29.630 0.00 0.00 0.00 2.57
1883 2409 8.938906 GGATTGTAACAGCATTTCATTTGATTT 58.061 29.630 0.00 0.00 0.00 2.17
1939 2468 8.851145 ACCTGTACAGATAACTATATGTGTGAG 58.149 37.037 24.68 3.20 43.59 3.51
2025 2559 4.017126 GGCTAATGCTGTCCTTTTAAGGT 58.983 43.478 8.31 0.00 42.10 3.50
2157 2691 0.793250 GCGCAGGAGAAGTTCAGTTC 59.207 55.000 0.30 0.00 0.00 3.01
2179 2714 9.270640 AGTTCATAGATCTAAATTGCAGATGAC 57.729 33.333 6.52 0.13 32.86 3.06
2222 2757 1.372087 GGTTGCTCTCAGGATTGCCG 61.372 60.000 0.00 0.00 39.96 5.69
2417 2968 7.876068 TGGAGTCAAGTAGGTAATTTTGTAGTG 59.124 37.037 0.00 0.00 0.00 2.74
2434 2985 4.649674 TGTAGTGCTCTACTTATCCCCTTG 59.350 45.833 22.64 0.00 44.74 3.61
2447 3001 6.447084 ACTTATCCCCTTGGTTTCATCTCTTA 59.553 38.462 0.00 0.00 0.00 2.10
2652 3275 4.866921 TCGATTGGTGTTATCGATGGTAG 58.133 43.478 8.54 0.00 46.26 3.18
2817 3440 5.012148 AGTTTGGTATACACTTGACAGCTCT 59.988 40.000 5.01 0.00 0.00 4.09
2948 3571 3.350833 AGGCAATCAAGGTTCATGAGAC 58.649 45.455 0.00 0.00 0.00 3.36
3123 3749 3.846360 ACTATAACGTGGTCTTGTCAGC 58.154 45.455 0.00 0.00 0.00 4.26
3546 4274 4.475051 TCAATTGCATCCTTTGATTGGG 57.525 40.909 0.00 0.00 0.00 4.12
3578 4306 7.581476 ACTTGGTTCGTTATGTTCACTTAATG 58.419 34.615 0.41 0.41 0.00 1.90
4333 5233 5.771469 TGGTCAACAATAGCATTTTCTGTG 58.229 37.500 0.00 0.00 0.00 3.66
4432 5348 5.848786 GCTAGAAAGCTTGTCTTAGAAACG 58.151 41.667 13.84 0.00 45.85 3.60
4843 5763 4.051237 CAAACTTAAAGCCCTTTCACTGC 58.949 43.478 0.00 0.00 34.23 4.40
5002 9415 1.414919 ACACGTAGTTTTCTGCTCCCA 59.585 47.619 0.00 0.00 41.61 4.37
5501 9926 3.388024 TGAGAAGCAGGTAGTGACAAACT 59.612 43.478 0.00 0.00 43.40 2.66
5522 9953 8.495148 CAAACTGCCCTTTTTGTACATATTTTC 58.505 33.333 0.00 0.00 0.00 2.29
5803 10243 3.141398 TGTTCCAGAAGATTGTGCTGAC 58.859 45.455 0.00 0.00 0.00 3.51
5906 10354 6.839124 TCCATGATTTTGCAGTTGATAACT 57.161 33.333 0.00 0.00 44.06 2.24
5962 10410 0.957395 ATTCCCGTGCACTGCAGAAG 60.957 55.000 23.35 13.61 40.08 2.85
6185 10633 8.766994 AACTTAACTGTAAATCCATATGCCAT 57.233 30.769 0.00 0.00 0.00 4.40
6275 10724 3.319405 CCGATCTGGTATGTCTAAGTGCT 59.681 47.826 0.00 0.00 0.00 4.40
6371 10851 4.154737 TCCGTCCCGTAATATAAGATGTCG 59.845 45.833 0.00 0.00 0.00 4.35
6770 11555 5.465724 ACGATGTCTGTTCTCAGTTTAAACC 59.534 40.000 14.72 0.00 41.91 3.27
6817 11602 4.130118 GGATATGGTGGTTACTCTGCTTG 58.870 47.826 0.00 0.00 0.00 4.01
6818 11603 4.141711 GGATATGGTGGTTACTCTGCTTGA 60.142 45.833 0.00 0.00 0.00 3.02
6819 11604 5.455326 GGATATGGTGGTTACTCTGCTTGAT 60.455 44.000 0.00 0.00 0.00 2.57
6820 11605 3.057969 TGGTGGTTACTCTGCTTGATG 57.942 47.619 0.00 0.00 0.00 3.07
6821 11606 2.290260 TGGTGGTTACTCTGCTTGATGG 60.290 50.000 0.00 0.00 0.00 3.51
6822 11607 2.027192 GGTGGTTACTCTGCTTGATGGA 60.027 50.000 0.00 0.00 0.00 3.41
6823 11608 3.370953 GGTGGTTACTCTGCTTGATGGAT 60.371 47.826 0.00 0.00 0.00 3.41
6824 11609 4.141711 GGTGGTTACTCTGCTTGATGGATA 60.142 45.833 0.00 0.00 0.00 2.59
6825 11610 5.455326 GGTGGTTACTCTGCTTGATGGATAT 60.455 44.000 0.00 0.00 0.00 1.63
6826 11611 5.468072 GTGGTTACTCTGCTTGATGGATATG 59.532 44.000 0.00 0.00 0.00 1.78
6827 11612 4.999950 GGTTACTCTGCTTGATGGATATGG 59.000 45.833 0.00 0.00 0.00 2.74
6828 11613 5.455326 GGTTACTCTGCTTGATGGATATGGT 60.455 44.000 0.00 0.00 0.00 3.55
6829 11614 4.082665 ACTCTGCTTGATGGATATGGTG 57.917 45.455 0.00 0.00 0.00 4.17
6830 11615 3.181447 ACTCTGCTTGATGGATATGGTGG 60.181 47.826 0.00 0.00 0.00 4.61
6831 11616 2.779430 TCTGCTTGATGGATATGGTGGT 59.221 45.455 0.00 0.00 0.00 4.16
6832 11617 3.202818 TCTGCTTGATGGATATGGTGGTT 59.797 43.478 0.00 0.00 0.00 3.67
6833 11618 4.411869 TCTGCTTGATGGATATGGTGGTTA 59.588 41.667 0.00 0.00 0.00 2.85
6834 11619 4.460263 TGCTTGATGGATATGGTGGTTAC 58.540 43.478 0.00 0.00 0.00 2.50
6835 11620 4.165950 TGCTTGATGGATATGGTGGTTACT 59.834 41.667 0.00 0.00 0.00 2.24
6836 11621 4.757149 GCTTGATGGATATGGTGGTTACTC 59.243 45.833 0.00 0.00 0.00 2.59
6898 11683 9.905713 ATAATGCAGTCTAAAATAAAGAGTGGA 57.094 29.630 9.34 7.20 45.21 4.02
7138 12198 1.678360 CTTGCTTGCTTGTTGTAGCG 58.322 50.000 0.00 0.00 44.18 4.26
7174 12234 6.152379 GGGTTCAGAACTTTAGATGCAAAAG 58.848 40.000 13.13 7.64 39.38 2.27
7336 12397 2.593346 ATGCAAGAGGTTAGCTCTCG 57.407 50.000 14.61 4.58 36.45 4.04
7396 12457 2.427095 CAGACACCGATGACATACCTGA 59.573 50.000 0.00 0.00 0.00 3.86
7547 12612 1.101331 GCTGCCTCAAAGAAGGATGG 58.899 55.000 0.00 0.00 38.87 3.51
7554 12619 4.688321 GCCTCAAAGAAGGATGGCTAAGAT 60.688 45.833 0.00 0.00 38.87 2.40
7601 12666 7.966812 TGGCTTCTGTATGTATATCTGTGAAT 58.033 34.615 0.00 0.00 0.00 2.57
7711 12776 5.699097 TCAGTTCCGTTTTATGGGAAAAG 57.301 39.130 0.00 0.00 43.52 2.27
7719 12788 6.071616 TCCGTTTTATGGGAAAAGGAAAGATG 60.072 38.462 3.16 0.00 41.86 2.90
7743 12812 3.454375 ACCTCAACGTGTTCTTGTACAG 58.546 45.455 0.00 0.00 0.00 2.74
7746 12815 2.605818 TCAACGTGTTCTTGTACAGCAC 59.394 45.455 0.00 4.06 0.00 4.40
7747 12816 2.303163 ACGTGTTCTTGTACAGCACA 57.697 45.000 16.41 9.86 34.51 4.57
7760 12829 2.673523 GCACAGTCTGATGGGCCT 59.326 61.111 6.91 0.00 44.11 5.19
7778 12847 4.256180 GCAGGGGCCCATAGGTCG 62.256 72.222 27.72 4.99 39.40 4.79
7792 12861 2.914379 GGTCGAAACCCTGTCTGTG 58.086 57.895 0.00 0.00 39.93 3.66
7793 12862 1.228657 GGTCGAAACCCTGTCTGTGC 61.229 60.000 0.00 0.00 39.93 4.57
7794 12863 0.531974 GTCGAAACCCTGTCTGTGCA 60.532 55.000 0.00 0.00 0.00 4.57
7795 12864 0.179234 TCGAAACCCTGTCTGTGCAA 59.821 50.000 0.00 0.00 0.00 4.08
7796 12865 0.588252 CGAAACCCTGTCTGTGCAAG 59.412 55.000 0.00 0.00 0.00 4.01
7797 12866 1.810031 CGAAACCCTGTCTGTGCAAGA 60.810 52.381 0.00 0.00 0.00 3.02
7798 12867 2.508526 GAAACCCTGTCTGTGCAAGAT 58.491 47.619 0.00 0.00 37.23 2.40
7799 12868 3.674997 GAAACCCTGTCTGTGCAAGATA 58.325 45.455 0.00 0.00 37.23 1.98
7800 12869 2.770164 ACCCTGTCTGTGCAAGATAC 57.230 50.000 0.00 0.00 37.23 2.24
7801 12870 1.279271 ACCCTGTCTGTGCAAGATACC 59.721 52.381 0.00 0.00 37.23 2.73
7802 12871 1.407437 CCCTGTCTGTGCAAGATACCC 60.407 57.143 0.00 0.00 37.23 3.69
7803 12872 1.556911 CCTGTCTGTGCAAGATACCCT 59.443 52.381 0.00 0.00 37.23 4.34
7804 12873 2.625737 CTGTCTGTGCAAGATACCCTG 58.374 52.381 0.00 0.00 37.23 4.45
7805 12874 2.234661 CTGTCTGTGCAAGATACCCTGA 59.765 50.000 0.00 0.00 37.23 3.86
7806 12875 2.840038 TGTCTGTGCAAGATACCCTGAT 59.160 45.455 0.00 0.00 37.23 2.90
7807 12876 4.030216 TGTCTGTGCAAGATACCCTGATA 58.970 43.478 0.00 0.00 37.23 2.15
7808 12877 4.100035 TGTCTGTGCAAGATACCCTGATAG 59.900 45.833 0.00 0.00 37.23 2.08
7809 12878 3.643320 TCTGTGCAAGATACCCTGATAGG 59.357 47.826 0.00 0.00 34.30 2.57
7810 12879 3.384168 TGTGCAAGATACCCTGATAGGT 58.616 45.455 0.00 0.00 44.37 3.08
7811 12880 3.134623 TGTGCAAGATACCCTGATAGGTG 59.865 47.826 0.00 0.00 41.42 4.00
7812 12881 2.705658 TGCAAGATACCCTGATAGGTGG 59.294 50.000 0.00 0.00 41.42 4.61
7813 12882 2.706190 GCAAGATACCCTGATAGGTGGT 59.294 50.000 0.00 0.00 41.42 4.16
7814 12883 3.495100 GCAAGATACCCTGATAGGTGGTG 60.495 52.174 0.00 0.00 41.42 4.17
7815 12884 2.977808 AGATACCCTGATAGGTGGTGG 58.022 52.381 0.00 0.00 41.42 4.61
7816 12885 1.978580 GATACCCTGATAGGTGGTGGG 59.021 57.143 0.00 0.00 41.42 4.61
7817 12886 0.693092 TACCCTGATAGGTGGTGGGC 60.693 60.000 0.00 0.00 41.42 5.36
7818 12887 1.694169 CCCTGATAGGTGGTGGGCT 60.694 63.158 0.00 0.00 31.93 5.19
7819 12888 1.700042 CCCTGATAGGTGGTGGGCTC 61.700 65.000 0.00 0.00 31.93 4.70
7820 12889 0.692419 CCTGATAGGTGGTGGGCTCT 60.692 60.000 0.00 0.00 0.00 4.09
7899 12998 1.498865 ATTTCCACGGATCGCGATGC 61.499 55.000 29.09 28.66 0.00 3.91
7900 12999 2.844072 TTTCCACGGATCGCGATGCA 62.844 55.000 34.64 16.73 0.00 3.96
7971 13070 0.386478 GGCGAGCAGACTTTTGCAAG 60.386 55.000 0.00 0.00 46.47 4.01
8004 13106 3.037833 CGCGCTCACACAAGCAGA 61.038 61.111 5.56 0.00 42.62 4.26
8007 13109 1.566563 CGCTCACACAAGCAGACAC 59.433 57.895 0.00 0.00 42.62 3.67
8008 13110 0.877649 CGCTCACACAAGCAGACACT 60.878 55.000 0.00 0.00 42.62 3.55
8009 13111 1.303309 GCTCACACAAGCAGACACTT 58.697 50.000 0.00 0.00 42.05 3.16
8135 14004 6.713450 TCATGATGCTTGCTGAATACATACAT 59.287 34.615 0.00 0.00 0.00 2.29
8157 14026 3.822940 ACAAACGGTTAGGAATTCCACA 58.177 40.909 26.22 10.85 38.89 4.17
8181 14050 4.685169 GCATGTGCACAGTATAAACACT 57.315 40.909 25.84 0.49 41.59 3.55
8196 14070 1.441515 CACTGAGCAACGCACATGC 60.442 57.895 0.00 0.00 44.15 4.06
8241 14115 8.958119 TCCGCTCACTATTATAAGATGTTTTT 57.042 30.769 0.00 0.00 0.00 1.94
8282 14158 6.403333 TGTATGTAGACATTTTTCACTCGC 57.597 37.500 0.00 0.00 37.76 5.03
8305 14181 5.741982 GCGTGTTTGTTTACTCATTTCAGTT 59.258 36.000 0.00 0.00 0.00 3.16
8306 14182 6.075572 GCGTGTTTGTTTACTCATTTCAGTTC 60.076 38.462 0.00 0.00 0.00 3.01
8310 14186 8.117988 TGTTTGTTTACTCATTTCAGTTCGTAC 58.882 33.333 0.00 0.00 0.00 3.67
8311 14187 6.442487 TGTTTACTCATTTCAGTTCGTACG 57.558 37.500 9.53 9.53 0.00 3.67
8314 14190 7.113404 TGTTTACTCATTTCAGTTCGTACGTAC 59.887 37.037 16.23 16.23 0.00 3.67
8316 14192 5.766222 ACTCATTTCAGTTCGTACGTACTT 58.234 37.500 22.83 7.84 0.00 2.24
8321 14197 8.022550 TCATTTCAGTTCGTACGTACTTCATAA 58.977 33.333 22.83 14.67 0.00 1.90
8323 14199 7.959718 TTCAGTTCGTACGTACTTCATAATC 57.040 36.000 22.83 5.54 0.00 1.75
8324 14200 7.075674 TCAGTTCGTACGTACTTCATAATCA 57.924 36.000 22.83 0.00 0.00 2.57
8359 14235 8.924511 AACATCTTATAATAGTGAATGGTGGG 57.075 34.615 0.00 0.00 0.00 4.61
8360 14236 8.275187 ACATCTTATAATAGTGAATGGTGGGA 57.725 34.615 0.00 0.00 0.00 4.37
8361 14237 8.378565 ACATCTTATAATAGTGAATGGTGGGAG 58.621 37.037 0.00 0.00 0.00 4.30
8362 14238 7.931015 TCTTATAATAGTGAATGGTGGGAGT 57.069 36.000 0.00 0.00 0.00 3.85
8363 14239 9.615660 ATCTTATAATAGTGAATGGTGGGAGTA 57.384 33.333 0.00 0.00 0.00 2.59
8364 14240 8.867097 TCTTATAATAGTGAATGGTGGGAGTAC 58.133 37.037 0.00 0.00 0.00 2.73
8365 14241 8.792830 TTATAATAGTGAATGGTGGGAGTACT 57.207 34.615 0.00 0.00 0.00 2.73
8366 14242 9.886337 TTATAATAGTGAATGGTGGGAGTACTA 57.114 33.333 0.00 0.00 0.00 1.82
8367 14243 6.481434 AATAGTGAATGGTGGGAGTACTAC 57.519 41.667 0.00 0.00 0.00 2.73
8368 14244 4.062490 AGTGAATGGTGGGAGTACTACT 57.938 45.455 4.77 0.00 0.00 2.57
8369 14245 5.202746 AGTGAATGGTGGGAGTACTACTA 57.797 43.478 4.77 0.00 0.00 1.82
8370 14246 4.954826 AGTGAATGGTGGGAGTACTACTAC 59.045 45.833 13.07 13.07 0.00 2.73
8371 14247 4.708421 GTGAATGGTGGGAGTACTACTACA 59.292 45.833 21.84 10.92 27.88 2.74
8372 14248 5.363005 GTGAATGGTGGGAGTACTACTACAT 59.637 44.000 21.84 12.56 27.88 2.29
8373 14249 5.962031 TGAATGGTGGGAGTACTACTACATT 59.038 40.000 21.84 18.95 27.88 2.71
8374 14250 6.442564 TGAATGGTGGGAGTACTACTACATTT 59.557 38.462 21.84 14.29 27.88 2.32
8375 14251 5.670792 TGGTGGGAGTACTACTACATTTG 57.329 43.478 21.84 0.00 27.88 2.32
8376 14252 4.081309 TGGTGGGAGTACTACTACATTTGC 60.081 45.833 21.84 5.97 27.88 3.68
8377 14253 4.161754 GGTGGGAGTACTACTACATTTGCT 59.838 45.833 21.84 0.00 27.88 3.91
8378 14254 5.349809 GTGGGAGTACTACTACATTTGCTC 58.650 45.833 16.29 0.00 27.88 4.26
8379 14255 5.127356 GTGGGAGTACTACTACATTTGCTCT 59.873 44.000 16.29 0.00 27.88 4.09
8380 14256 5.720041 TGGGAGTACTACTACATTTGCTCTT 59.280 40.000 4.77 0.00 27.88 2.85
8381 14257 6.212791 TGGGAGTACTACTACATTTGCTCTTT 59.787 38.462 4.77 0.00 27.88 2.52
8382 14258 7.398047 TGGGAGTACTACTACATTTGCTCTTTA 59.602 37.037 4.77 0.00 27.88 1.85
8383 14259 8.422566 GGGAGTACTACTACATTTGCTCTTTAT 58.577 37.037 4.77 0.00 27.88 1.40
8384 14260 9.250624 GGAGTACTACTACATTTGCTCTTTATG 57.749 37.037 0.00 0.00 0.00 1.90
8389 14265 9.988815 ACTACTACATTTGCTCTTTATGATAGG 57.011 33.333 0.00 0.00 0.00 2.57
8390 14266 7.736447 ACTACATTTGCTCTTTATGATAGGC 57.264 36.000 0.00 0.00 0.00 3.93
8391 14267 6.712547 ACTACATTTGCTCTTTATGATAGGCC 59.287 38.462 0.00 0.00 0.00 5.19
8392 14268 4.516698 ACATTTGCTCTTTATGATAGGCCG 59.483 41.667 0.00 0.00 0.00 6.13
8393 14269 2.169832 TGCTCTTTATGATAGGCCGC 57.830 50.000 0.00 0.00 0.00 6.53
8394 14270 1.694150 TGCTCTTTATGATAGGCCGCT 59.306 47.619 0.00 0.00 0.00 5.52
8395 14271 2.104792 TGCTCTTTATGATAGGCCGCTT 59.895 45.455 0.00 0.00 0.00 4.68
8396 14272 3.142174 GCTCTTTATGATAGGCCGCTTT 58.858 45.455 0.00 0.00 0.00 3.51
8397 14273 3.565902 GCTCTTTATGATAGGCCGCTTTT 59.434 43.478 0.00 0.00 0.00 2.27
8398 14274 4.319839 GCTCTTTATGATAGGCCGCTTTTC 60.320 45.833 0.00 0.00 0.00 2.29
8399 14275 5.036117 TCTTTATGATAGGCCGCTTTTCT 57.964 39.130 0.00 0.00 0.00 2.52
8400 14276 5.057149 TCTTTATGATAGGCCGCTTTTCTC 58.943 41.667 0.00 0.00 0.00 2.87
8401 14277 2.262423 ATGATAGGCCGCTTTTCTCC 57.738 50.000 0.00 0.00 0.00 3.71
8402 14278 0.908910 TGATAGGCCGCTTTTCTCCA 59.091 50.000 0.00 0.00 0.00 3.86
8403 14279 1.280710 TGATAGGCCGCTTTTCTCCAA 59.719 47.619 0.00 0.00 0.00 3.53
8404 14280 2.092429 TGATAGGCCGCTTTTCTCCAAT 60.092 45.455 0.00 0.00 0.00 3.16
8405 14281 3.135712 TGATAGGCCGCTTTTCTCCAATA 59.864 43.478 0.00 0.00 0.00 1.90
8406 14282 2.736670 AGGCCGCTTTTCTCCAATAT 57.263 45.000 0.00 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 3.256631 GCAAAATGAGTGGTGATGAAGGT 59.743 43.478 0.00 0.00 0.00 3.50
106 107 6.863275 AGTCGAAAACCAAAAAGATTTCTGT 58.137 32.000 0.00 0.00 31.29 3.41
214 216 5.820423 CGAAACATATCAACATGGGGTCTAA 59.180 40.000 0.00 0.00 0.00 2.10
269 278 4.093472 TGGCCACTACAGTGTAAACATT 57.907 40.909 0.00 0.00 44.21 2.71
286 295 6.322491 CAACTTTAGTTTAAGCACTATGGCC 58.678 40.000 0.00 0.00 35.83 5.36
541 602 2.550606 TGTTTACACCGAAGTTGCCATC 59.449 45.455 0.00 0.00 0.00 3.51
553 614 5.070770 TGAATTGCCATGATGTTTACACC 57.929 39.130 0.00 0.00 0.00 4.16
652 715 6.744537 CGATTGAAGATCTGTTTTCACAATCC 59.255 38.462 0.00 0.00 36.71 3.01
653 716 6.744537 CCGATTGAAGATCTGTTTTCACAATC 59.255 38.462 0.00 0.00 36.70 2.67
654 717 6.430925 TCCGATTGAAGATCTGTTTTCACAAT 59.569 34.615 0.00 0.00 33.36 2.71
655 718 5.762711 TCCGATTGAAGATCTGTTTTCACAA 59.237 36.000 0.00 0.00 33.36 3.33
703 782 4.458708 GCTCGCAAAATCCGATTAAGATC 58.541 43.478 0.00 0.00 33.83 2.75
704 783 3.059597 CGCTCGCAAAATCCGATTAAGAT 60.060 43.478 0.00 0.00 33.83 2.40
706 785 2.030457 ACGCTCGCAAAATCCGATTAAG 59.970 45.455 0.00 0.00 33.83 1.85
707 786 2.004017 ACGCTCGCAAAATCCGATTAA 58.996 42.857 0.00 0.00 33.83 1.40
708 787 1.591158 GACGCTCGCAAAATCCGATTA 59.409 47.619 0.00 0.00 33.83 1.75
709 788 0.373716 GACGCTCGCAAAATCCGATT 59.626 50.000 0.00 0.00 33.83 3.34
710 789 1.429148 GGACGCTCGCAAAATCCGAT 61.429 55.000 0.00 0.00 33.83 4.18
711 790 2.098233 GGACGCTCGCAAAATCCGA 61.098 57.895 0.00 0.00 0.00 4.55
712 791 2.399611 GGACGCTCGCAAAATCCG 59.600 61.111 0.00 0.00 0.00 4.18
713 792 1.376609 ATGGGACGCTCGCAAAATCC 61.377 55.000 8.36 0.00 42.66 3.01
714 793 0.028110 GATGGGACGCTCGCAAAATC 59.972 55.000 8.36 0.70 42.66 2.17
715 794 1.376609 GGATGGGACGCTCGCAAAAT 61.377 55.000 8.36 0.00 42.66 1.82
716 795 2.038269 GGATGGGACGCTCGCAAAA 61.038 57.895 8.36 0.00 42.66 2.44
717 796 2.435938 GGATGGGACGCTCGCAAA 60.436 61.111 8.36 0.00 42.66 3.68
718 797 3.390521 AGGATGGGACGCTCGCAA 61.391 61.111 8.36 0.00 42.66 4.85
719 798 4.147449 CAGGATGGGACGCTCGCA 62.147 66.667 7.09 7.09 43.55 5.10
721 800 2.930385 AATGCAGGATGGGACGCTCG 62.930 60.000 0.00 0.00 35.86 5.03
722 801 0.749454 AAATGCAGGATGGGACGCTC 60.749 55.000 0.00 0.00 35.86 5.03
735 814 2.045438 ATGCGTCGGGGAAATGCA 60.045 55.556 0.00 0.00 40.23 3.96
749 828 2.896854 TGGCGCGGATCTTGATGC 60.897 61.111 8.83 0.00 0.00 3.91
881 960 4.398630 GGGAAGGGGGCAAAGGGG 62.399 72.222 0.00 0.00 0.00 4.79
883 962 2.360585 GAGGGAAGGGGGCAAAGG 59.639 66.667 0.00 0.00 0.00 3.11
885 964 3.272847 GGGAGGGAAGGGGGCAAA 61.273 66.667 0.00 0.00 0.00 3.68
886 965 3.928172 ATGGGAGGGAAGGGGGCAA 62.928 63.158 0.00 0.00 0.00 4.52
887 966 4.386100 ATGGGAGGGAAGGGGGCA 62.386 66.667 0.00 0.00 0.00 5.36
888 967 3.825623 CATGGGAGGGAAGGGGGC 61.826 72.222 0.00 0.00 0.00 5.80
893 975 1.152368 GATGGCCATGGGAGGGAAG 59.848 63.158 26.56 0.00 0.00 3.46
895 977 3.170672 CGATGGCCATGGGAGGGA 61.171 66.667 26.56 0.00 0.00 4.20
929 1011 2.689034 GGGGTGGGAGAGGGTGAG 60.689 72.222 0.00 0.00 0.00 3.51
934 1016 3.618855 TTCTCGGGGGTGGGAGAGG 62.619 68.421 0.00 0.00 40.17 3.69
937 1019 2.669240 GTTTCTCGGGGGTGGGAG 59.331 66.667 0.00 0.00 0.00 4.30
938 1020 2.931649 GGTTTCTCGGGGGTGGGA 60.932 66.667 0.00 0.00 0.00 4.37
939 1021 4.043100 GGGTTTCTCGGGGGTGGG 62.043 72.222 0.00 0.00 0.00 4.61
940 1022 1.614226 TAGGGTTTCTCGGGGGTGG 60.614 63.158 0.00 0.00 0.00 4.61
1044 1464 1.039785 TGACCTCGATCTCCCAGCAG 61.040 60.000 0.00 0.00 0.00 4.24
1257 1692 0.604073 TTAGCACGGGTGATCGTTCA 59.396 50.000 2.38 0.00 41.86 3.18
1695 2221 5.402398 GCCATTGCTAAGTTTTTAGTCAGG 58.598 41.667 0.00 0.00 38.81 3.86
1727 2253 7.396540 AAAACCTTTGATGAGTCATATGACC 57.603 36.000 28.26 20.50 45.85 4.02
1829 2355 7.608153 TCTTCCGTACTTCAATTCAATCAGTA 58.392 34.615 0.00 0.00 0.00 2.74
1852 2378 5.809001 TGAAATGCTGTTACAATCCTCTCT 58.191 37.500 0.00 0.00 0.00 3.10
1884 2410 8.859090 TCAAATGAAATGCTCCTTCTCTAAAAA 58.141 29.630 0.00 0.00 0.00 1.94
1885 2411 8.408043 TCAAATGAAATGCTCCTTCTCTAAAA 57.592 30.769 0.00 0.00 0.00 1.52
1886 2412 8.464404 CATCAAATGAAATGCTCCTTCTCTAAA 58.536 33.333 0.00 0.00 0.00 1.85
1887 2413 7.830697 TCATCAAATGAAATGCTCCTTCTCTAA 59.169 33.333 0.00 0.00 36.11 2.10
1888 2414 7.281774 GTCATCAAATGAAATGCTCCTTCTCTA 59.718 37.037 0.00 0.00 41.69 2.43
1889 2415 6.095160 GTCATCAAATGAAATGCTCCTTCTCT 59.905 38.462 0.00 0.00 41.69 3.10
1890 2416 6.264088 GTCATCAAATGAAATGCTCCTTCTC 58.736 40.000 0.00 0.00 41.69 2.87
1891 2417 5.126707 GGTCATCAAATGAAATGCTCCTTCT 59.873 40.000 0.00 0.00 41.69 2.85
1892 2418 5.126707 AGGTCATCAAATGAAATGCTCCTTC 59.873 40.000 0.00 0.00 41.69 3.46
1893 2419 5.021458 AGGTCATCAAATGAAATGCTCCTT 58.979 37.500 0.00 0.00 41.69 3.36
1894 2420 4.401519 CAGGTCATCAAATGAAATGCTCCT 59.598 41.667 0.00 0.00 41.69 3.69
1895 2421 4.159135 ACAGGTCATCAAATGAAATGCTCC 59.841 41.667 0.00 0.00 41.69 4.70
1896 2422 5.320549 ACAGGTCATCAAATGAAATGCTC 57.679 39.130 0.00 0.00 41.69 4.26
1939 2468 5.938125 TGGATGAAGCTTGAACCTAGTTTAC 59.062 40.000 13.13 0.00 0.00 2.01
2025 2559 9.126151 TCATCATTTAACTTGGTTTTACTGTGA 57.874 29.630 0.00 0.00 0.00 3.58
2179 2714 8.418662 ACCACATTCATTCATCTCCAAATTATG 58.581 33.333 0.00 0.00 0.00 1.90
2222 2757 3.611766 TCTCTCCTTCAACGGATTTCC 57.388 47.619 0.00 0.00 31.43 3.13
2230 2765 3.149981 CAACCCCTTTCTCTCCTTCAAC 58.850 50.000 0.00 0.00 0.00 3.18
2417 2968 4.080526 TGAAACCAAGGGGATAAGTAGAGC 60.081 45.833 0.00 0.00 38.05 4.09
2434 2985 6.128254 GCTGTAAGGTGTTAAGAGATGAAACC 60.128 42.308 0.00 0.00 0.00 3.27
2652 3275 4.743151 TGTGTGAGTGTATCTTTGACGAAC 59.257 41.667 0.00 0.00 0.00 3.95
2817 3440 5.319043 AGAAACCAATTACCTGACCTGAA 57.681 39.130 0.00 0.00 0.00 3.02
2892 3515 9.110502 AGACAAACCTAACAAAACAAAACAAAA 57.889 25.926 0.00 0.00 0.00 2.44
2896 3519 6.869388 TGGAGACAAACCTAACAAAACAAAAC 59.131 34.615 0.00 0.00 37.44 2.43
2948 3571 7.552050 AGATGAGATATTTACCTGGAGGAAG 57.448 40.000 0.00 0.00 38.94 3.46
3123 3749 9.440784 CACCAAAAATGAAATGTCAGAAAATTG 57.559 29.630 0.00 0.00 37.14 2.32
3546 4274 6.149807 TGAACATAACGAACCAAGTAAATCCC 59.850 38.462 0.00 0.00 0.00 3.85
3578 4306 6.076981 TCTTTTCTGAGAAGCATGGAAAAC 57.923 37.500 3.21 0.00 33.95 2.43
3962 4857 9.923143 ATCCGAATCACGATTAATTATTAGACA 57.077 29.630 0.00 0.00 45.77 3.41
4117 5012 5.808366 AATACCACTGAGAACAAGAGACA 57.192 39.130 0.00 0.00 0.00 3.41
4333 5233 4.521130 TCTAGATGGCATCGGAATACAC 57.479 45.455 21.01 0.00 0.00 2.90
4432 5348 6.974622 CACAGCCAATGTAAGAAAATGGATAC 59.025 38.462 0.00 0.00 41.41 2.24
4843 5763 3.358707 TGACAACTGAGCATTGCAAAG 57.641 42.857 11.91 9.96 0.00 2.77
5186 9599 4.702612 TCCACACTTCTTAAGTTTGCAACA 59.297 37.500 0.00 0.00 40.46 3.33
5247 9660 5.450818 TTTGGTTATCAGTGCCCTCTTAT 57.549 39.130 0.00 0.00 0.00 1.73
5501 9926 7.731054 ACTTGAAAATATGTACAAAAAGGGCA 58.269 30.769 0.00 0.00 0.00 5.36
5803 10243 3.751518 AGGTTGTAGTTGCCCTGTTAAG 58.248 45.455 0.00 0.00 0.00 1.85
6134 10582 1.676529 ACCTGACCATCATACTCGTCG 59.323 52.381 0.00 0.00 0.00 5.12
6185 10633 0.398522 ATGGAGGGCACATCGGACTA 60.399 55.000 0.00 0.00 0.00 2.59
6275 10724 7.822161 CCATCATATTGGGATGTTCACTTTA 57.178 36.000 0.00 0.00 40.38 1.85
6817 11602 4.319177 GCAGAGTAACCACCATATCCATC 58.681 47.826 0.00 0.00 0.00 3.51
6818 11603 3.073062 GGCAGAGTAACCACCATATCCAT 59.927 47.826 0.00 0.00 0.00 3.41
6819 11604 2.438021 GGCAGAGTAACCACCATATCCA 59.562 50.000 0.00 0.00 0.00 3.41
6820 11605 2.706190 AGGCAGAGTAACCACCATATCC 59.294 50.000 0.00 0.00 0.00 2.59
6821 11606 4.423625 AAGGCAGAGTAACCACCATATC 57.576 45.455 0.00 0.00 0.00 1.63
6822 11607 4.862641 AAAGGCAGAGTAACCACCATAT 57.137 40.909 0.00 0.00 0.00 1.78
6823 11608 4.650972 AAAAGGCAGAGTAACCACCATA 57.349 40.909 0.00 0.00 0.00 2.74
6824 11609 3.525800 AAAAGGCAGAGTAACCACCAT 57.474 42.857 0.00 0.00 0.00 3.55
6825 11610 3.219281 GAAAAAGGCAGAGTAACCACCA 58.781 45.455 0.00 0.00 0.00 4.17
6826 11611 3.219281 TGAAAAAGGCAGAGTAACCACC 58.781 45.455 0.00 0.00 0.00 4.61
6827 11612 3.253432 CCTGAAAAAGGCAGAGTAACCAC 59.747 47.826 0.00 0.00 39.93 4.16
6828 11613 3.486383 CCTGAAAAAGGCAGAGTAACCA 58.514 45.455 0.00 0.00 39.93 3.67
6898 11683 1.330655 CCCATACCTCGTCCACAGCT 61.331 60.000 0.00 0.00 0.00 4.24
7138 12198 1.141657 TCTGAACCCATGCTCCTATGC 59.858 52.381 0.00 0.00 0.00 3.14
7522 12587 2.165167 CTTCTTTGAGGCAGCCAATCA 58.835 47.619 15.80 6.76 0.00 2.57
7523 12588 1.475682 CCTTCTTTGAGGCAGCCAATC 59.524 52.381 15.80 3.63 0.00 2.67
7524 12589 1.076024 TCCTTCTTTGAGGCAGCCAAT 59.924 47.619 15.80 0.00 36.71 3.16
7623 12688 4.991056 TGAGAAACAGTAACTGACATGCTC 59.009 41.667 0.00 0.00 35.18 4.26
7711 12776 1.880027 ACGTTGAGGTTGCATCTTTCC 59.120 47.619 0.00 0.00 0.00 3.13
7719 12788 1.400494 ACAAGAACACGTTGAGGTTGC 59.600 47.619 0.00 0.00 0.00 4.17
7743 12812 1.748122 CAGGCCCATCAGACTGTGC 60.748 63.158 0.00 1.85 0.00 4.57
7746 12815 1.451567 CTGCAGGCCCATCAGACTG 60.452 63.158 5.57 0.00 0.00 3.51
7747 12816 2.677289 CCTGCAGGCCCATCAGACT 61.677 63.158 22.33 0.00 0.00 3.24
7760 12829 3.096495 GACCTATGGGCCCCTGCA 61.096 66.667 22.27 0.00 40.13 4.41
7778 12847 1.967319 TCTTGCACAGACAGGGTTTC 58.033 50.000 0.00 0.00 0.00 2.78
7791 12860 2.705658 CCACCTATCAGGGTATCTTGCA 59.294 50.000 0.00 0.00 40.58 4.08
7792 12861 2.706190 ACCACCTATCAGGGTATCTTGC 59.294 50.000 0.00 0.00 40.58 4.01
7793 12862 3.071602 CCACCACCTATCAGGGTATCTTG 59.928 52.174 0.00 0.00 40.58 3.02
7794 12863 3.318313 CCACCACCTATCAGGGTATCTT 58.682 50.000 0.00 0.00 40.58 2.40
7795 12864 2.427889 CCCACCACCTATCAGGGTATCT 60.428 54.545 0.00 0.00 40.58 1.98
7796 12865 1.978580 CCCACCACCTATCAGGGTATC 59.021 57.143 0.00 0.00 40.58 2.24
7797 12866 2.045557 GCCCACCACCTATCAGGGTAT 61.046 57.143 0.00 0.00 40.58 2.73
7798 12867 0.693092 GCCCACCACCTATCAGGGTA 60.693 60.000 0.00 0.00 40.58 3.69
7799 12868 2.001269 GCCCACCACCTATCAGGGT 61.001 63.158 0.00 0.00 40.58 4.34
7800 12869 1.694169 AGCCCACCACCTATCAGGG 60.694 63.158 0.00 0.00 40.58 4.45
7801 12870 0.692419 AGAGCCCACCACCTATCAGG 60.692 60.000 0.00 0.00 42.49 3.86
7802 12871 1.134280 CAAGAGCCCACCACCTATCAG 60.134 57.143 0.00 0.00 0.00 2.90
7803 12872 0.911769 CAAGAGCCCACCACCTATCA 59.088 55.000 0.00 0.00 0.00 2.15
7804 12873 0.464554 GCAAGAGCCCACCACCTATC 60.465 60.000 0.00 0.00 33.58 2.08
7805 12874 1.207488 TGCAAGAGCCCACCACCTAT 61.207 55.000 0.00 0.00 41.13 2.57
7806 12875 1.845664 TGCAAGAGCCCACCACCTA 60.846 57.895 0.00 0.00 41.13 3.08
7807 12876 3.177884 TGCAAGAGCCCACCACCT 61.178 61.111 0.00 0.00 41.13 4.00
7808 12877 2.985847 GTGCAAGAGCCCACCACC 60.986 66.667 0.00 0.00 41.13 4.61
7809 12878 1.604593 ATGTGCAAGAGCCCACCAC 60.605 57.895 0.00 0.00 41.13 4.16
7810 12879 1.604308 CATGTGCAAGAGCCCACCA 60.604 57.895 0.00 0.00 41.13 4.17
7811 12880 1.181098 AACATGTGCAAGAGCCCACC 61.181 55.000 0.00 0.00 41.13 4.61
7812 12881 0.675633 AAACATGTGCAAGAGCCCAC 59.324 50.000 0.00 0.00 41.13 4.61
7813 12882 2.161855 CTAAACATGTGCAAGAGCCCA 58.838 47.619 0.00 0.00 41.13 5.36
7814 12883 2.162408 GTCTAAACATGTGCAAGAGCCC 59.838 50.000 0.00 0.00 41.13 5.19
7815 12884 3.077359 AGTCTAAACATGTGCAAGAGCC 58.923 45.455 0.00 0.00 41.13 4.70
7816 12885 3.120060 CCAGTCTAAACATGTGCAAGAGC 60.120 47.826 0.00 0.00 42.57 4.09
7817 12886 3.120060 GCCAGTCTAAACATGTGCAAGAG 60.120 47.826 0.00 0.00 0.00 2.85
7818 12887 2.813754 GCCAGTCTAAACATGTGCAAGA 59.186 45.455 0.00 0.00 0.00 3.02
7819 12888 2.816087 AGCCAGTCTAAACATGTGCAAG 59.184 45.455 0.00 0.00 0.00 4.01
7820 12889 2.862541 AGCCAGTCTAAACATGTGCAA 58.137 42.857 0.00 0.00 0.00 4.08
7971 13070 1.477059 GCGCGCGTGTTTTTCTTTC 59.523 52.632 32.35 5.70 0.00 2.62
8016 13118 3.791973 ACCTCTGTCTTATGAAGCTCG 57.208 47.619 0.00 0.00 0.00 5.03
8017 13119 4.187694 CCAACCTCTGTCTTATGAAGCTC 58.812 47.826 0.00 0.00 0.00 4.09
8018 13120 3.584848 ACCAACCTCTGTCTTATGAAGCT 59.415 43.478 0.00 0.00 0.00 3.74
8019 13121 3.686726 CACCAACCTCTGTCTTATGAAGC 59.313 47.826 0.00 0.00 0.00 3.86
8020 13122 4.932200 GTCACCAACCTCTGTCTTATGAAG 59.068 45.833 0.00 0.00 0.00 3.02
8022 13124 3.260884 GGTCACCAACCTCTGTCTTATGA 59.739 47.826 0.00 0.00 45.45 2.15
8023 13125 3.600388 GGTCACCAACCTCTGTCTTATG 58.400 50.000 0.00 0.00 45.45 1.90
8025 13127 1.616865 CGGTCACCAACCTCTGTCTTA 59.383 52.381 0.00 0.00 46.87 2.10
8027 13129 2.050269 CGGTCACCAACCTCTGTCT 58.950 57.895 0.00 0.00 46.87 3.41
8028 13130 1.668151 GCGGTCACCAACCTCTGTC 60.668 63.158 0.00 0.00 46.87 3.51
8029 13131 2.140792 AGCGGTCACCAACCTCTGT 61.141 57.895 0.00 0.00 46.87 3.41
8135 14004 4.970711 TGTGGAATTCCTAACCGTTTGTA 58.029 39.130 24.73 0.00 36.82 2.41
8178 14047 1.441515 GCATGTGCGTTGCTCAGTG 60.442 57.895 0.00 0.00 35.55 3.66
8196 14070 5.177696 GCGGATGGAGTAACTTTTAGCATAG 59.822 44.000 0.00 0.00 0.00 2.23
8197 14071 5.054477 GCGGATGGAGTAACTTTTAGCATA 58.946 41.667 0.00 0.00 0.00 3.14
8198 14072 3.877508 GCGGATGGAGTAACTTTTAGCAT 59.122 43.478 0.00 0.00 0.00 3.79
8199 14073 3.055385 AGCGGATGGAGTAACTTTTAGCA 60.055 43.478 0.00 0.00 0.00 3.49
8200 14074 3.532542 AGCGGATGGAGTAACTTTTAGC 58.467 45.455 0.00 0.00 0.00 3.09
8280 14156 4.275662 TGAAATGAGTAAACAAACACGCG 58.724 39.130 3.53 3.53 0.00 6.01
8282 14158 6.138546 CGAACTGAAATGAGTAAACAAACACG 59.861 38.462 0.00 0.00 0.00 4.49
8306 14182 9.821662 TGAATATCTGATTATGAAGTACGTACG 57.178 33.333 19.49 15.01 0.00 3.67
8342 14218 8.011290 AGTAGTACTCCCACCATTCACTATTAT 58.989 37.037 0.00 0.00 0.00 1.28
8343 14219 7.359849 AGTAGTACTCCCACCATTCACTATTA 58.640 38.462 0.00 0.00 0.00 0.98
8344 14220 6.203072 AGTAGTACTCCCACCATTCACTATT 58.797 40.000 0.00 0.00 0.00 1.73
8345 14221 5.778542 AGTAGTACTCCCACCATTCACTAT 58.221 41.667 0.00 0.00 0.00 2.12
8346 14222 5.202746 AGTAGTACTCCCACCATTCACTA 57.797 43.478 0.00 0.00 0.00 2.74
8347 14223 4.062490 AGTAGTACTCCCACCATTCACT 57.938 45.455 0.00 0.00 0.00 3.41
8348 14224 4.708421 TGTAGTAGTACTCCCACCATTCAC 59.292 45.833 5.96 0.00 0.00 3.18
8349 14225 4.938028 TGTAGTAGTACTCCCACCATTCA 58.062 43.478 5.96 0.00 0.00 2.57
8350 14226 6.481434 AATGTAGTAGTACTCCCACCATTC 57.519 41.667 5.96 0.00 0.00 2.67
8351 14227 6.650120 CAAATGTAGTAGTACTCCCACCATT 58.350 40.000 5.96 6.24 0.00 3.16
8352 14228 5.396436 GCAAATGTAGTAGTACTCCCACCAT 60.396 44.000 5.96 0.51 0.00 3.55
8353 14229 4.081309 GCAAATGTAGTAGTACTCCCACCA 60.081 45.833 5.96 0.00 0.00 4.17
8354 14230 4.161754 AGCAAATGTAGTAGTACTCCCACC 59.838 45.833 5.96 0.00 0.00 4.61
8355 14231 5.127356 AGAGCAAATGTAGTAGTACTCCCAC 59.873 44.000 5.96 0.17 0.00 4.61
8356 14232 5.269991 AGAGCAAATGTAGTAGTACTCCCA 58.730 41.667 5.96 5.60 0.00 4.37
8357 14233 5.855740 AGAGCAAATGTAGTAGTACTCCC 57.144 43.478 5.96 0.00 0.00 4.30
8358 14234 9.250624 CATAAAGAGCAAATGTAGTAGTACTCC 57.749 37.037 5.96 0.00 0.00 3.85
8363 14239 9.988815 CCTATCATAAAGAGCAAATGTAGTAGT 57.011 33.333 0.00 0.00 0.00 2.73
8364 14240 8.930760 GCCTATCATAAAGAGCAAATGTAGTAG 58.069 37.037 0.00 0.00 0.00 2.57
8365 14241 7.878127 GGCCTATCATAAAGAGCAAATGTAGTA 59.122 37.037 0.00 0.00 0.00 1.82
8366 14242 6.712547 GGCCTATCATAAAGAGCAAATGTAGT 59.287 38.462 0.00 0.00 0.00 2.73
8367 14243 6.128445 CGGCCTATCATAAAGAGCAAATGTAG 60.128 42.308 0.00 0.00 0.00 2.74
8368 14244 5.700832 CGGCCTATCATAAAGAGCAAATGTA 59.299 40.000 0.00 0.00 0.00 2.29
8369 14245 4.516698 CGGCCTATCATAAAGAGCAAATGT 59.483 41.667 0.00 0.00 0.00 2.71
8370 14246 4.614535 GCGGCCTATCATAAAGAGCAAATG 60.615 45.833 0.00 0.00 0.00 2.32
8371 14247 3.503748 GCGGCCTATCATAAAGAGCAAAT 59.496 43.478 0.00 0.00 0.00 2.32
8372 14248 2.878406 GCGGCCTATCATAAAGAGCAAA 59.122 45.455 0.00 0.00 0.00 3.68
8373 14249 2.104792 AGCGGCCTATCATAAAGAGCAA 59.895 45.455 0.00 0.00 0.00 3.91
8374 14250 1.694150 AGCGGCCTATCATAAAGAGCA 59.306 47.619 0.00 0.00 0.00 4.26
8375 14251 2.464157 AGCGGCCTATCATAAAGAGC 57.536 50.000 0.00 0.00 0.00 4.09
8376 14252 5.059833 AGAAAAGCGGCCTATCATAAAGAG 58.940 41.667 0.00 0.00 0.00 2.85
8377 14253 5.036117 AGAAAAGCGGCCTATCATAAAGA 57.964 39.130 0.00 0.00 0.00 2.52
8378 14254 4.214332 GGAGAAAAGCGGCCTATCATAAAG 59.786 45.833 0.00 0.00 0.00 1.85
8379 14255 4.134563 GGAGAAAAGCGGCCTATCATAAA 58.865 43.478 0.00 0.00 0.00 1.40
8380 14256 3.135712 TGGAGAAAAGCGGCCTATCATAA 59.864 43.478 0.00 0.00 0.00 1.90
8381 14257 2.703536 TGGAGAAAAGCGGCCTATCATA 59.296 45.455 0.00 0.00 0.00 2.15
8382 14258 1.490490 TGGAGAAAAGCGGCCTATCAT 59.510 47.619 0.00 0.00 0.00 2.45
8383 14259 0.908910 TGGAGAAAAGCGGCCTATCA 59.091 50.000 0.00 0.00 0.00 2.15
8384 14260 2.038387 TTGGAGAAAAGCGGCCTATC 57.962 50.000 0.00 0.00 0.00 2.08
8385 14261 2.736670 ATTGGAGAAAAGCGGCCTAT 57.263 45.000 0.00 0.00 0.00 2.57
8386 14262 3.857157 ATATTGGAGAAAAGCGGCCTA 57.143 42.857 0.00 0.00 0.00 3.93
8387 14263 2.736670 ATATTGGAGAAAAGCGGCCT 57.263 45.000 0.00 0.00 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.