Multiple sequence alignment - TraesCS5A01G303900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G303900 chr5A 100.000 2591 0 0 1 2591 512713895 512716485 0.000000e+00 4785
1 TraesCS5A01G303900 chr5A 98.387 124 1 1 2469 2591 497333343 497333466 1.560000e-52 217
2 TraesCS5A01G303900 chr5A 96.183 131 4 1 2462 2591 131648346 131648476 2.020000e-51 213
3 TraesCS5A01G303900 chr5B 93.171 1274 76 6 879 2143 511373585 511374856 0.000000e+00 1860
4 TraesCS5A01G303900 chr5B 94.286 735 33 4 1 733 488266475 488267202 0.000000e+00 1116
5 TraesCS5A01G303900 chr4B 85.449 1402 189 10 752 2143 625342531 625343927 0.000000e+00 1445
6 TraesCS5A01G303900 chr5D 94.701 736 32 5 1 730 407359330 407360064 0.000000e+00 1136
7 TraesCS5A01G303900 chr5D 82.219 748 75 25 1 718 116974371 116975090 2.220000e-165 592
8 TraesCS5A01G303900 chr5D 94.260 331 19 0 2138 2468 64955078 64955408 8.270000e-140 507
9 TraesCS5A01G303900 chr5D 97.656 128 2 1 2465 2591 64563472 64563345 4.340000e-53 219
10 TraesCS5A01G303900 chr2D 83.046 755 68 37 1 718 35309686 35310417 4.710000e-177 630
11 TraesCS5A01G303900 chr2D 94.562 331 18 0 2138 2468 496358144 496358474 1.780000e-141 512
12 TraesCS5A01G303900 chr2D 94.030 335 18 2 2134 2468 106990381 106990713 8.270000e-140 507
13 TraesCS5A01G303900 chr4A 81.853 777 80 21 1 733 200138728 200137969 4.770000e-167 597
14 TraesCS5A01G303900 chr7D 94.562 331 17 1 2138 2468 372384667 372384338 6.400000e-141 510
15 TraesCS5A01G303900 chr7D 94.294 333 18 1 2136 2468 428043693 428044024 2.300000e-140 508
16 TraesCS5A01G303900 chr7D 97.619 126 2 1 2467 2591 592029588 592029713 5.620000e-52 215
17 TraesCS5A01G303900 chr4D 94.294 333 19 0 2136 2468 378437037 378436705 6.400000e-141 510
18 TraesCS5A01G303900 chr1D 94.562 331 17 1 2138 2468 199280089 199280418 6.400000e-141 510
19 TraesCS5A01G303900 chr1D 94.260 331 19 0 2138 2468 474330077 474330407 8.270000e-140 507
20 TraesCS5A01G303900 chr1A 94.545 330 17 1 2138 2467 464263626 464263954 2.300000e-140 508
21 TraesCS5A01G303900 chr7B 75.867 750 169 10 979 1722 104782999 104782256 3.150000e-99 372
22 TraesCS5A01G303900 chr6D 74.815 810 192 11 989 1792 375014290 375013487 3.170000e-94 355
23 TraesCS5A01G303900 chr7A 76.112 787 101 42 2 723 79231583 79230819 5.340000e-87 331
24 TraesCS5A01G303900 chr7A 96.899 129 2 2 2464 2591 287672294 287672167 5.620000e-52 215
25 TraesCS5A01G303900 chr7A 94.928 138 4 3 2456 2591 702289142 702289278 2.020000e-51 213
26 TraesCS5A01G303900 chr7A 79.553 313 33 10 71 366 78843055 78842757 7.320000e-46 195
27 TraesCS5A01G303900 chr3B 72.940 813 205 14 918 1723 50392018 50392822 4.250000e-68 268
28 TraesCS5A01G303900 chrUn 97.619 126 2 1 2467 2591 101652855 101652730 5.620000e-52 215
29 TraesCS5A01G303900 chr2A 96.899 129 3 1 2464 2591 776273805 776273677 5.620000e-52 215
30 TraesCS5A01G303900 chr2B 93.662 142 5 4 2450 2589 240000397 240000258 2.610000e-50 209


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G303900 chr5A 512713895 512716485 2590 False 4785 4785 100.000 1 2591 1 chr5A.!!$F3 2590
1 TraesCS5A01G303900 chr5B 511373585 511374856 1271 False 1860 1860 93.171 879 2143 1 chr5B.!!$F2 1264
2 TraesCS5A01G303900 chr5B 488266475 488267202 727 False 1116 1116 94.286 1 733 1 chr5B.!!$F1 732
3 TraesCS5A01G303900 chr4B 625342531 625343927 1396 False 1445 1445 85.449 752 2143 1 chr4B.!!$F1 1391
4 TraesCS5A01G303900 chr5D 407359330 407360064 734 False 1136 1136 94.701 1 730 1 chr5D.!!$F3 729
5 TraesCS5A01G303900 chr5D 116974371 116975090 719 False 592 592 82.219 1 718 1 chr5D.!!$F2 717
6 TraesCS5A01G303900 chr2D 35309686 35310417 731 False 630 630 83.046 1 718 1 chr2D.!!$F1 717
7 TraesCS5A01G303900 chr4A 200137969 200138728 759 True 597 597 81.853 1 733 1 chr4A.!!$R1 732
8 TraesCS5A01G303900 chr7B 104782256 104782999 743 True 372 372 75.867 979 1722 1 chr7B.!!$R1 743
9 TraesCS5A01G303900 chr6D 375013487 375014290 803 True 355 355 74.815 989 1792 1 chr6D.!!$R1 803
10 TraesCS5A01G303900 chr7A 79230819 79231583 764 True 331 331 76.112 2 723 1 chr7A.!!$R2 721
11 TraesCS5A01G303900 chr3B 50392018 50392822 804 False 268 268 72.940 918 1723 1 chr3B.!!$F1 805

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
808 910 0.17902 GCGATTCCATCACCCCATCA 60.179 55.0 0.0 0.0 0.0 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2377 2487 0.036858 ACTCTTCCTCAAAGCTCGGC 60.037 55.0 0.0 0.0 34.76 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 36 7.435192 GCTCTTTCTGATAGTAGAAAAGAGAGC 59.565 40.741 21.19 18.34 46.64 4.09
74 90 2.504519 GCCAACCCCTAGCGGTAG 59.495 66.667 14.73 14.73 33.98 3.18
195 215 4.828939 TCAGTTGCAGATTCCTCACAAAAT 59.171 37.500 0.00 0.00 0.00 1.82
196 216 6.003326 TCAGTTGCAGATTCCTCACAAAATA 58.997 36.000 0.00 0.00 0.00 1.40
248 268 0.887836 CACTTCAGGCTCTTGCTGCA 60.888 55.000 0.00 0.00 39.59 4.41
640 734 1.523032 CGGGGAGTAAACGGATGGC 60.523 63.158 0.00 0.00 0.00 4.40
705 807 2.549611 TTCGCTGCTTCTCGGCTCTC 62.550 60.000 0.00 0.00 44.92 3.20
733 835 1.617357 GGTTTCCACCTACTGTCGTCT 59.383 52.381 0.00 0.00 40.44 4.18
734 836 2.609737 GGTTTCCACCTACTGTCGTCTG 60.610 54.545 0.00 0.00 40.44 3.51
735 837 1.991121 TTCCACCTACTGTCGTCTGT 58.009 50.000 0.00 0.00 0.00 3.41
736 838 1.244816 TCCACCTACTGTCGTCTGTG 58.755 55.000 2.66 0.00 0.00 3.66
737 839 0.388649 CCACCTACTGTCGTCTGTGC 60.389 60.000 2.66 0.00 0.00 4.57
738 840 0.598562 CACCTACTGTCGTCTGTGCT 59.401 55.000 2.66 0.00 0.00 4.40
739 841 0.598562 ACCTACTGTCGTCTGTGCTG 59.401 55.000 2.66 0.00 0.00 4.41
740 842 0.734253 CCTACTGTCGTCTGTGCTGC 60.734 60.000 2.66 0.00 0.00 5.25
741 843 0.734253 CTACTGTCGTCTGTGCTGCC 60.734 60.000 0.00 0.00 0.00 4.85
742 844 2.472232 TACTGTCGTCTGTGCTGCCG 62.472 60.000 0.00 0.00 0.00 5.69
743 845 3.848347 CTGTCGTCTGTGCTGCCGT 62.848 63.158 0.00 0.00 0.00 5.68
744 846 2.257371 GTCGTCTGTGCTGCCGTA 59.743 61.111 0.00 0.00 0.00 4.02
745 847 2.087009 GTCGTCTGTGCTGCCGTAC 61.087 63.158 0.00 0.00 0.00 3.67
746 848 2.049526 CGTCTGTGCTGCCGTACA 60.050 61.111 0.00 0.00 34.50 2.90
785 887 1.137825 GTTCTGACTCCTCTCGGCG 59.862 63.158 0.00 0.00 0.00 6.46
801 903 3.640000 CGGCGGCGATTCCATCAC 61.640 66.667 29.19 0.00 34.01 3.06
808 910 0.179020 GCGATTCCATCACCCCATCA 60.179 55.000 0.00 0.00 0.00 3.07
815 917 3.058341 TCCATCACCCCATCATTGAGAT 58.942 45.455 0.00 0.00 37.48 2.75
817 919 3.418995 CATCACCCCATCATTGAGATCC 58.581 50.000 0.00 0.00 33.72 3.36
818 920 2.490961 TCACCCCATCATTGAGATCCA 58.509 47.619 0.00 0.00 33.72 3.41
823 926 2.224719 CCCATCATTGAGATCCACCTCC 60.225 54.545 0.00 0.00 33.72 4.30
846 949 4.851179 CTAACCCTTCCCGCCGGC 62.851 72.222 19.07 19.07 0.00 6.13
863 966 4.745751 CGTCAAACGGCGGCCCTA 62.746 66.667 14.55 0.00 38.08 3.53
877 980 1.305887 CCCTAGGGGTCTCCACGTT 60.306 63.158 21.44 0.00 38.25 3.99
910 1013 3.027787 GGGGGCTGGGATCCAAAT 58.972 61.111 15.23 0.00 30.80 2.32
916 1019 0.685458 GCTGGGATCCAAATGCCTGT 60.685 55.000 15.23 0.00 43.54 4.00
933 1036 2.028112 CCTGTGGATCGAAGAAACCTCA 60.028 50.000 0.00 0.00 43.58 3.86
954 1057 3.629398 CAGGCAAGAGAATTATGGGTGAC 59.371 47.826 0.00 0.00 0.00 3.67
958 1061 4.458989 GCAAGAGAATTATGGGTGACACAA 59.541 41.667 8.08 0.00 0.00 3.33
981 1084 4.467084 GGATCGGGCGGCTTCACA 62.467 66.667 9.56 0.00 0.00 3.58
1116 1219 1.068585 GGTTCACACGGACCGAACT 59.931 57.895 23.38 0.00 39.18 3.01
1201 1304 2.281484 GGCCGCTTGAGGACAACA 60.281 61.111 0.00 0.00 39.73 3.33
1208 1311 4.380531 CCGCTTGAGGACAACATGTATAT 58.619 43.478 0.00 0.00 32.27 0.86
1307 1410 2.280823 CTGGAACCCTACGACGGCTC 62.281 65.000 0.00 0.00 0.00 4.70
1522 1625 1.618343 TCAAGAATGCCGTGTCTCTGA 59.382 47.619 0.00 0.00 0.00 3.27
1589 1692 5.659525 TGAAGTATGAAAGACTCCCGGATTA 59.340 40.000 0.73 0.00 0.00 1.75
1818 1927 4.277174 ACACAAAATACCAATGCTTCACGA 59.723 37.500 0.00 0.00 0.00 4.35
1861 1970 1.956869 AGGTCTGGATGTCACCATGA 58.043 50.000 0.00 0.00 39.34 3.07
1870 1979 1.133181 TGTCACCATGAGGGAGGCAA 61.133 55.000 0.00 0.00 39.01 4.52
1895 2005 1.763968 AATAGAAAAAGGGGAGCCGC 58.236 50.000 0.00 0.00 0.00 6.53
1919 2029 1.743252 CAGACCCTTCAGCTTCCGC 60.743 63.158 0.00 0.00 0.00 5.54
1954 2064 2.808543 ACAACAGATTCGTCAGGAAAGC 59.191 45.455 0.00 0.00 38.36 3.51
1977 2087 1.751927 GATGTTGCCAGCCCCAGAG 60.752 63.158 0.00 0.00 0.00 3.35
1994 2104 4.625800 GACACCAGTCAGCCCATC 57.374 61.111 0.00 0.00 44.34 3.51
2029 2139 0.765510 AAAGAGGAACAAGACCGGCT 59.234 50.000 0.00 0.00 0.00 5.52
2030 2140 0.765510 AAGAGGAACAAGACCGGCTT 59.234 50.000 0.00 2.82 37.29 4.35
2051 2161 4.827304 TGATGATCAGCGACAAAAACAA 57.173 36.364 6.46 0.00 0.00 2.83
2070 2180 3.253188 ACAATGGGAAGAACACGACAATG 59.747 43.478 0.00 0.00 0.00 2.82
2082 2192 1.339929 ACGACAATGCCCAAAAACTCC 59.660 47.619 0.00 0.00 0.00 3.85
2136 2246 0.460987 GCCAAGCGCAGTGAGTCTAT 60.461 55.000 11.47 0.00 37.47 1.98
2140 2250 2.738846 CAAGCGCAGTGAGTCTATTGTT 59.261 45.455 11.47 0.00 0.00 2.83
2141 2251 2.341257 AGCGCAGTGAGTCTATTGTTG 58.659 47.619 11.47 0.00 0.00 3.33
2142 2252 1.394917 GCGCAGTGAGTCTATTGTTGG 59.605 52.381 0.30 0.00 0.00 3.77
2145 2255 2.027192 GCAGTGAGTCTATTGTTGGGGA 60.027 50.000 0.00 0.00 0.00 4.81
2146 2256 3.559171 GCAGTGAGTCTATTGTTGGGGAA 60.559 47.826 0.00 0.00 0.00 3.97
2147 2257 4.003648 CAGTGAGTCTATTGTTGGGGAAC 58.996 47.826 0.00 0.00 0.00 3.62
2148 2258 3.000727 GTGAGTCTATTGTTGGGGAACG 58.999 50.000 0.00 0.00 0.00 3.95
2149 2259 2.635915 TGAGTCTATTGTTGGGGAACGT 59.364 45.455 0.00 0.00 0.00 3.99
2150 2260 3.833650 TGAGTCTATTGTTGGGGAACGTA 59.166 43.478 0.00 0.00 0.00 3.57
2151 2261 4.081862 TGAGTCTATTGTTGGGGAACGTAG 60.082 45.833 0.00 0.00 0.00 3.51
2153 2263 5.018809 AGTCTATTGTTGGGGAACGTAGTA 58.981 41.667 0.00 0.00 45.00 1.82
2154 2264 5.481473 AGTCTATTGTTGGGGAACGTAGTAA 59.519 40.000 0.00 0.00 45.00 2.24
2155 2265 6.155737 AGTCTATTGTTGGGGAACGTAGTAAT 59.844 38.462 0.00 0.00 45.00 1.89
2156 2266 6.820152 GTCTATTGTTGGGGAACGTAGTAATT 59.180 38.462 0.00 0.00 45.00 1.40
2157 2267 7.335171 GTCTATTGTTGGGGAACGTAGTAATTT 59.665 37.037 0.00 0.00 45.00 1.82
2158 2268 5.945466 TTGTTGGGGAACGTAGTAATTTC 57.055 39.130 0.00 0.00 45.00 2.17
2159 2269 4.970711 TGTTGGGGAACGTAGTAATTTCA 58.029 39.130 0.00 0.00 45.00 2.69
2160 2270 5.374921 TGTTGGGGAACGTAGTAATTTCAA 58.625 37.500 0.00 0.00 45.00 2.69
2161 2271 5.826737 TGTTGGGGAACGTAGTAATTTCAAA 59.173 36.000 0.00 0.00 45.00 2.69
2162 2272 6.320672 TGTTGGGGAACGTAGTAATTTCAAAA 59.679 34.615 0.00 0.00 45.00 2.44
2163 2273 6.956202 TGGGGAACGTAGTAATTTCAAAAA 57.044 33.333 0.00 0.00 45.00 1.94
2182 2292 1.231221 AAAAATCCTACGCACACGCA 58.769 45.000 0.00 0.00 45.53 5.24
2183 2293 1.231221 AAAATCCTACGCACACGCAA 58.769 45.000 0.00 0.00 45.53 4.85
2184 2294 0.796312 AAATCCTACGCACACGCAAG 59.204 50.000 0.00 0.00 45.53 4.01
2185 2295 0.037697 AATCCTACGCACACGCAAGA 60.038 50.000 0.00 0.00 45.53 3.02
2186 2296 0.175760 ATCCTACGCACACGCAAGAT 59.824 50.000 0.00 0.00 45.53 2.40
2187 2297 0.457853 TCCTACGCACACGCAAGATC 60.458 55.000 0.00 0.00 45.53 2.75
2188 2298 0.735978 CCTACGCACACGCAAGATCA 60.736 55.000 0.00 0.00 45.53 2.92
2189 2299 1.280982 CTACGCACACGCAAGATCAT 58.719 50.000 0.00 0.00 45.53 2.45
2190 2300 0.998669 TACGCACACGCAAGATCATG 59.001 50.000 0.00 0.00 45.53 3.07
2191 2301 1.061411 CGCACACGCAAGATCATGG 59.939 57.895 0.00 0.00 43.62 3.66
2192 2302 1.638388 CGCACACGCAAGATCATGGT 61.638 55.000 0.00 0.00 43.62 3.55
2193 2303 0.179181 GCACACGCAAGATCATGGTG 60.179 55.000 14.17 14.17 43.62 4.17
2194 2304 1.441738 CACACGCAAGATCATGGTGA 58.558 50.000 19.56 0.00 43.62 4.02
2195 2305 2.011947 CACACGCAAGATCATGGTGAT 58.988 47.619 19.56 0.00 40.34 3.06
2196 2306 2.011947 ACACGCAAGATCATGGTGATG 58.988 47.619 19.56 8.58 37.20 3.07
2197 2307 1.019673 ACGCAAGATCATGGTGATGC 58.980 50.000 0.00 3.06 37.20 3.91
2198 2308 1.018910 CGCAAGATCATGGTGATGCA 58.981 50.000 11.83 0.00 37.20 3.96
2199 2309 1.607148 CGCAAGATCATGGTGATGCAT 59.393 47.619 0.00 0.00 37.20 3.96
2200 2310 2.809696 CGCAAGATCATGGTGATGCATA 59.190 45.455 0.00 0.00 37.20 3.14
2201 2311 3.120304 CGCAAGATCATGGTGATGCATAG 60.120 47.826 0.00 0.00 37.20 2.23
2202 2312 3.366070 GCAAGATCATGGTGATGCATAGC 60.366 47.826 0.00 0.00 37.20 2.97
2203 2313 3.782656 AGATCATGGTGATGCATAGCA 57.217 42.857 0.00 4.86 44.86 3.49
2204 2314 4.094830 AGATCATGGTGATGCATAGCAA 57.905 40.909 0.00 0.00 43.62 3.91
2205 2315 4.663334 AGATCATGGTGATGCATAGCAAT 58.337 39.130 0.00 0.00 43.62 3.56
2206 2316 4.459337 AGATCATGGTGATGCATAGCAATG 59.541 41.667 0.00 5.10 43.62 2.82
2207 2317 3.822940 TCATGGTGATGCATAGCAATGA 58.177 40.909 13.21 13.21 43.62 2.57
2208 2318 3.818773 TCATGGTGATGCATAGCAATGAG 59.181 43.478 13.21 5.62 43.62 2.90
2209 2319 3.564053 TGGTGATGCATAGCAATGAGA 57.436 42.857 0.00 0.00 43.62 3.27
2210 2320 3.473625 TGGTGATGCATAGCAATGAGAG 58.526 45.455 0.00 0.00 43.62 3.20
2211 2321 2.812591 GGTGATGCATAGCAATGAGAGG 59.187 50.000 0.00 0.00 43.62 3.69
2212 2322 2.812591 GTGATGCATAGCAATGAGAGGG 59.187 50.000 0.00 0.00 43.62 4.30
2213 2323 2.224695 TGATGCATAGCAATGAGAGGGG 60.225 50.000 0.00 0.00 43.62 4.79
2214 2324 1.510492 TGCATAGCAATGAGAGGGGA 58.490 50.000 0.00 0.00 34.76 4.81
2215 2325 1.419012 TGCATAGCAATGAGAGGGGAG 59.581 52.381 0.00 0.00 34.76 4.30
2216 2326 1.696336 GCATAGCAATGAGAGGGGAGA 59.304 52.381 0.00 0.00 34.84 3.71
2217 2327 2.289569 GCATAGCAATGAGAGGGGAGAG 60.290 54.545 0.00 0.00 34.84 3.20
2218 2328 2.856760 TAGCAATGAGAGGGGAGAGT 57.143 50.000 0.00 0.00 0.00 3.24
2219 2329 1.202330 AGCAATGAGAGGGGAGAGTG 58.798 55.000 0.00 0.00 0.00 3.51
2220 2330 0.908198 GCAATGAGAGGGGAGAGTGT 59.092 55.000 0.00 0.00 0.00 3.55
2221 2331 1.406614 GCAATGAGAGGGGAGAGTGTG 60.407 57.143 0.00 0.00 0.00 3.82
2222 2332 1.905215 CAATGAGAGGGGAGAGTGTGT 59.095 52.381 0.00 0.00 0.00 3.72
2223 2333 1.859302 ATGAGAGGGGAGAGTGTGTC 58.141 55.000 0.00 0.00 0.00 3.67
2224 2334 0.251832 TGAGAGGGGAGAGTGTGTCC 60.252 60.000 0.00 0.00 0.00 4.02
2225 2335 0.251832 GAGAGGGGAGAGTGTGTCCA 60.252 60.000 0.00 0.00 35.57 4.02
2226 2336 0.543174 AGAGGGGAGAGTGTGTCCAC 60.543 60.000 0.00 0.00 42.17 4.02
2227 2337 1.878656 GAGGGGAGAGTGTGTCCACG 61.879 65.000 0.00 0.00 46.56 4.94
2228 2338 2.207924 GGGGAGAGTGTGTCCACGT 61.208 63.158 0.00 0.00 46.56 4.49
2229 2339 0.896940 GGGGAGAGTGTGTCCACGTA 60.897 60.000 0.00 0.00 46.56 3.57
2230 2340 0.243095 GGGAGAGTGTGTCCACGTAC 59.757 60.000 0.00 0.00 46.56 3.67
2231 2341 0.243095 GGAGAGTGTGTCCACGTACC 59.757 60.000 0.00 0.00 46.56 3.34
2232 2342 0.243095 GAGAGTGTGTCCACGTACCC 59.757 60.000 0.00 0.00 46.56 3.69
2233 2343 0.178970 AGAGTGTGTCCACGTACCCT 60.179 55.000 0.00 0.00 46.56 4.34
2234 2344 0.243095 GAGTGTGTCCACGTACCCTC 59.757 60.000 0.00 0.00 46.56 4.30
2235 2345 1.080974 GTGTGTCCACGTACCCTCG 60.081 63.158 0.00 0.00 0.00 4.63
2236 2346 1.529010 TGTGTCCACGTACCCTCGT 60.529 57.895 0.00 0.00 45.10 4.18
2237 2347 0.250684 TGTGTCCACGTACCCTCGTA 60.251 55.000 0.00 0.00 42.27 3.43
2238 2348 0.449388 GTGTCCACGTACCCTCGTAG 59.551 60.000 0.00 0.00 42.27 3.51
2239 2349 0.324614 TGTCCACGTACCCTCGTAGA 59.675 55.000 0.00 0.00 42.27 2.59
2240 2350 0.729690 GTCCACGTACCCTCGTAGAC 59.270 60.000 0.00 2.79 42.50 2.59
2241 2351 0.392998 TCCACGTACCCTCGTAGACC 60.393 60.000 0.00 0.00 42.27 3.85
2242 2352 1.709147 CCACGTACCCTCGTAGACCG 61.709 65.000 0.00 0.00 42.27 4.79
2243 2353 0.740868 CACGTACCCTCGTAGACCGA 60.741 60.000 0.00 0.00 45.00 4.69
2244 2354 0.036388 ACGTACCCTCGTAGACCGAA 60.036 55.000 0.00 0.00 46.75 4.30
2245 2355 1.086696 CGTACCCTCGTAGACCGAAA 58.913 55.000 0.00 0.00 46.75 3.46
2246 2356 1.063174 CGTACCCTCGTAGACCGAAAG 59.937 57.143 0.00 0.00 46.75 2.62
2247 2357 1.098050 TACCCTCGTAGACCGAAAGC 58.902 55.000 0.00 0.00 46.75 3.51
2248 2358 0.896940 ACCCTCGTAGACCGAAAGCA 60.897 55.000 0.00 0.00 46.75 3.91
2249 2359 0.179134 CCCTCGTAGACCGAAAGCAG 60.179 60.000 0.00 0.00 46.75 4.24
2250 2360 0.809385 CCTCGTAGACCGAAAGCAGA 59.191 55.000 0.00 0.00 46.75 4.26
2251 2361 1.201647 CCTCGTAGACCGAAAGCAGAA 59.798 52.381 0.00 0.00 46.75 3.02
2252 2362 2.520979 CTCGTAGACCGAAAGCAGAAG 58.479 52.381 0.00 0.00 46.75 2.85
2253 2363 0.992802 CGTAGACCGAAAGCAGAAGC 59.007 55.000 0.00 0.00 39.56 3.86
2254 2364 2.635856 CGTAGACCGAAAGCAGAAGCG 61.636 57.143 0.00 0.00 42.50 4.68
2279 2389 4.111489 GCACAACGCGGTTAATATAGTC 57.889 45.455 12.47 0.00 0.00 2.59
2280 2390 3.361339 GCACAACGCGGTTAATATAGTCG 60.361 47.826 12.47 0.00 0.00 4.18
2281 2391 3.792956 CACAACGCGGTTAATATAGTCGT 59.207 43.478 12.47 0.00 0.00 4.34
2282 2392 4.969395 CACAACGCGGTTAATATAGTCGTA 59.031 41.667 12.47 0.00 0.00 3.43
2283 2393 4.970003 ACAACGCGGTTAATATAGTCGTAC 59.030 41.667 12.47 0.00 0.00 3.67
2284 2394 3.799035 ACGCGGTTAATATAGTCGTACG 58.201 45.455 12.47 9.53 0.00 3.67
2285 2395 3.247648 ACGCGGTTAATATAGTCGTACGT 59.752 43.478 16.05 0.00 0.00 3.57
2286 2396 3.835250 CGCGGTTAATATAGTCGTACGTC 59.165 47.826 16.05 10.06 0.00 4.34
2287 2397 4.376413 CGCGGTTAATATAGTCGTACGTCT 60.376 45.833 18.54 18.54 0.00 4.18
2288 2398 5.444122 GCGGTTAATATAGTCGTACGTCTT 58.556 41.667 19.61 10.43 0.00 3.01
2289 2399 5.561873 GCGGTTAATATAGTCGTACGTCTTC 59.438 44.000 19.61 7.26 0.00 2.87
2290 2400 6.649436 CGGTTAATATAGTCGTACGTCTTCA 58.351 40.000 19.61 8.90 0.00 3.02
2291 2401 6.571520 CGGTTAATATAGTCGTACGTCTTCAC 59.428 42.308 19.61 8.08 0.00 3.18
2303 2413 2.853731 GTCTTCACGATCTGACCGAT 57.146 50.000 0.00 0.00 34.25 4.18
2304 2414 2.722071 GTCTTCACGATCTGACCGATC 58.278 52.381 0.00 0.00 44.16 3.69
2313 2423 4.238761 GATCTGACCGATCAAATACCGA 57.761 45.455 2.27 0.00 46.35 4.69
2314 2424 4.617959 GATCTGACCGATCAAATACCGAA 58.382 43.478 2.27 0.00 46.35 4.30
2315 2425 3.777478 TCTGACCGATCAAATACCGAAC 58.223 45.455 0.00 0.00 33.30 3.95
2316 2426 2.532235 TGACCGATCAAATACCGAACG 58.468 47.619 0.00 0.00 0.00 3.95
2317 2427 1.257155 GACCGATCAAATACCGAACGC 59.743 52.381 0.00 0.00 0.00 4.84
2318 2428 1.282817 CCGATCAAATACCGAACGCA 58.717 50.000 0.00 0.00 0.00 5.24
2319 2429 1.005347 CCGATCAAATACCGAACGCAC 60.005 52.381 0.00 0.00 0.00 5.34
2320 2430 1.330818 CGATCAAATACCGAACGCACG 60.331 52.381 0.00 0.00 0.00 5.34
2337 2447 2.435059 GGCACCTCCGAGTTCAGC 60.435 66.667 0.00 0.00 0.00 4.26
2338 2448 2.343758 GCACCTCCGAGTTCAGCA 59.656 61.111 0.00 0.00 0.00 4.41
2339 2449 2.029844 GCACCTCCGAGTTCAGCAC 61.030 63.158 0.00 0.00 0.00 4.40
2340 2450 1.367471 CACCTCCGAGTTCAGCACA 59.633 57.895 0.00 0.00 0.00 4.57
2341 2451 0.946221 CACCTCCGAGTTCAGCACAC 60.946 60.000 0.00 0.00 0.00 3.82
2342 2452 1.734477 CCTCCGAGTTCAGCACACG 60.734 63.158 0.00 0.00 39.03 4.49
2343 2453 1.007271 CTCCGAGTTCAGCACACGT 60.007 57.895 0.00 0.00 37.75 4.49
2344 2454 0.597637 CTCCGAGTTCAGCACACGTT 60.598 55.000 0.00 0.00 37.75 3.99
2345 2455 0.596600 TCCGAGTTCAGCACACGTTC 60.597 55.000 0.00 0.00 37.75 3.95
2346 2456 0.874175 CCGAGTTCAGCACACGTTCA 60.874 55.000 0.00 0.00 37.75 3.18
2347 2457 0.927537 CGAGTTCAGCACACGTTCAA 59.072 50.000 0.00 0.00 35.01 2.69
2348 2458 1.332028 CGAGTTCAGCACACGTTCAAC 60.332 52.381 0.00 0.00 35.01 3.18
2349 2459 1.933853 GAGTTCAGCACACGTTCAACT 59.066 47.619 0.00 0.00 0.00 3.16
2350 2460 1.933853 AGTTCAGCACACGTTCAACTC 59.066 47.619 0.00 0.00 0.00 3.01
2351 2461 0.927537 TTCAGCACACGTTCAACTCG 59.072 50.000 0.00 0.00 0.00 4.18
2352 2462 0.101579 TCAGCACACGTTCAACTCGA 59.898 50.000 0.00 0.00 0.00 4.04
2353 2463 0.229753 CAGCACACGTTCAACTCGAC 59.770 55.000 0.00 0.00 0.00 4.20
2354 2464 0.179121 AGCACACGTTCAACTCGACA 60.179 50.000 0.00 0.00 0.00 4.35
2355 2465 0.648441 GCACACGTTCAACTCGACAA 59.352 50.000 0.00 0.00 0.00 3.18
2356 2466 1.591394 GCACACGTTCAACTCGACAAC 60.591 52.381 0.00 0.00 0.00 3.32
2357 2467 0.918619 ACACGTTCAACTCGACAACG 59.081 50.000 10.88 10.88 46.57 4.10
2359 2469 3.971620 CGTTCAACTCGACAACGTC 57.028 52.632 0.00 0.00 38.45 4.34
2360 2470 0.501435 CGTTCAACTCGACAACGTCC 59.499 55.000 0.00 0.00 38.45 4.79
2361 2471 0.857287 GTTCAACTCGACAACGTCCC 59.143 55.000 0.00 0.00 40.69 4.46
2362 2472 0.748450 TTCAACTCGACAACGTCCCT 59.252 50.000 0.00 0.00 40.69 4.20
2363 2473 0.313043 TCAACTCGACAACGTCCCTC 59.687 55.000 0.00 0.00 40.69 4.30
2364 2474 1.002250 CAACTCGACAACGTCCCTCG 61.002 60.000 0.00 0.00 46.00 4.63
2365 2475 1.168407 AACTCGACAACGTCCCTCGA 61.168 55.000 10.60 10.60 42.86 4.04
2366 2476 1.168407 ACTCGACAACGTCCCTCGAA 61.168 55.000 11.77 0.19 42.86 3.71
2367 2477 0.728466 CTCGACAACGTCCCTCGAAC 60.728 60.000 11.77 0.00 42.86 3.95
2368 2478 1.168407 TCGACAACGTCCCTCGAACT 61.168 55.000 9.08 0.00 42.86 3.01
2369 2479 0.728466 CGACAACGTCCCTCGAACTC 60.728 60.000 4.00 0.00 42.86 3.01
2370 2480 0.388263 GACAACGTCCCTCGAACTCC 60.388 60.000 0.00 0.00 42.86 3.85
2371 2481 1.443872 CAACGTCCCTCGAACTCCG 60.444 63.158 0.00 0.00 42.86 4.63
2372 2482 1.601759 AACGTCCCTCGAACTCCGA 60.602 57.895 0.00 0.00 46.35 4.55
2379 2489 3.207354 TCGAACTCCGATCCAGCC 58.793 61.111 0.00 0.00 43.23 4.85
2380 2490 2.278857 CGAACTCCGATCCAGCCG 60.279 66.667 0.00 0.00 41.76 5.52
2381 2491 2.771639 CGAACTCCGATCCAGCCGA 61.772 63.158 0.00 0.00 41.76 5.54
2382 2492 1.066587 GAACTCCGATCCAGCCGAG 59.933 63.158 0.00 0.00 0.00 4.63
2383 2493 2.962697 GAACTCCGATCCAGCCGAGC 62.963 65.000 0.00 0.00 0.00 5.03
2384 2494 3.222855 CTCCGATCCAGCCGAGCT 61.223 66.667 0.00 0.00 40.77 4.09
2385 2495 2.759973 TCCGATCCAGCCGAGCTT 60.760 61.111 0.00 0.00 36.40 3.74
2386 2496 2.187946 CCGATCCAGCCGAGCTTT 59.812 61.111 0.00 0.00 36.40 3.51
2387 2497 2.176273 CCGATCCAGCCGAGCTTTG 61.176 63.158 0.00 0.00 36.40 2.77
2388 2498 1.153568 CGATCCAGCCGAGCTTTGA 60.154 57.895 0.00 0.00 36.40 2.69
2389 2499 1.150567 CGATCCAGCCGAGCTTTGAG 61.151 60.000 0.00 0.00 36.40 3.02
2390 2500 0.813210 GATCCAGCCGAGCTTTGAGG 60.813 60.000 0.00 0.00 36.40 3.86
2391 2501 1.267574 ATCCAGCCGAGCTTTGAGGA 61.268 55.000 0.00 5.55 36.40 3.71
2392 2502 1.003355 CCAGCCGAGCTTTGAGGAA 60.003 57.895 0.00 0.00 36.40 3.36
2393 2503 1.023513 CCAGCCGAGCTTTGAGGAAG 61.024 60.000 0.00 0.00 36.40 3.46
2394 2504 0.036952 CAGCCGAGCTTTGAGGAAGA 60.037 55.000 0.00 0.00 36.40 2.87
2395 2505 0.248843 AGCCGAGCTTTGAGGAAGAG 59.751 55.000 0.00 0.00 33.89 2.85
2396 2506 0.036858 GCCGAGCTTTGAGGAAGAGT 60.037 55.000 0.00 0.00 37.57 3.24
2397 2507 1.609320 GCCGAGCTTTGAGGAAGAGTT 60.609 52.381 0.00 0.00 37.57 3.01
2398 2508 2.342179 CCGAGCTTTGAGGAAGAGTTC 58.658 52.381 0.00 0.00 37.57 3.01
2409 2519 2.370281 GAAGAGTTCCATCAGCACGA 57.630 50.000 0.00 0.00 0.00 4.35
2410 2520 2.898705 GAAGAGTTCCATCAGCACGAT 58.101 47.619 0.00 0.00 33.27 3.73
2417 2527 2.092374 CATCAGCACGATGGTGTGG 58.908 57.895 9.74 2.50 46.73 4.17
2421 2531 3.253955 GCACGATGGTGTGGTGAC 58.746 61.111 9.74 0.00 46.13 3.67
2422 2532 2.667318 GCACGATGGTGTGGTGACG 61.667 63.158 9.74 0.00 46.13 4.35
2423 2533 1.006688 CACGATGGTGTGGTGACGA 60.007 57.895 0.00 0.00 38.68 4.20
2424 2534 0.389817 CACGATGGTGTGGTGACGAT 60.390 55.000 0.00 0.00 38.68 3.73
2425 2535 0.389817 ACGATGGTGTGGTGACGATG 60.390 55.000 0.00 0.00 0.00 3.84
2426 2536 0.389817 CGATGGTGTGGTGACGATGT 60.390 55.000 0.00 0.00 0.00 3.06
2427 2537 1.808411 GATGGTGTGGTGACGATGTT 58.192 50.000 0.00 0.00 0.00 2.71
2428 2538 1.464608 GATGGTGTGGTGACGATGTTG 59.535 52.381 0.00 0.00 0.00 3.33
2429 2539 0.466124 TGGTGTGGTGACGATGTTGA 59.534 50.000 0.00 0.00 0.00 3.18
2430 2540 1.071542 TGGTGTGGTGACGATGTTGAT 59.928 47.619 0.00 0.00 0.00 2.57
2431 2541 1.464608 GGTGTGGTGACGATGTTGATG 59.535 52.381 0.00 0.00 0.00 3.07
2432 2542 2.143122 GTGTGGTGACGATGTTGATGT 58.857 47.619 0.00 0.00 0.00 3.06
2433 2543 2.548057 GTGTGGTGACGATGTTGATGTT 59.452 45.455 0.00 0.00 0.00 2.71
2434 2544 2.805671 TGTGGTGACGATGTTGATGTTC 59.194 45.455 0.00 0.00 0.00 3.18
2435 2545 3.067106 GTGGTGACGATGTTGATGTTCT 58.933 45.455 0.00 0.00 0.00 3.01
2436 2546 4.242475 GTGGTGACGATGTTGATGTTCTA 58.758 43.478 0.00 0.00 0.00 2.10
2437 2547 4.091509 GTGGTGACGATGTTGATGTTCTAC 59.908 45.833 0.00 0.00 0.00 2.59
2438 2548 4.021456 TGGTGACGATGTTGATGTTCTACT 60.021 41.667 0.00 0.00 0.00 2.57
2439 2549 4.327357 GGTGACGATGTTGATGTTCTACTG 59.673 45.833 0.00 0.00 0.00 2.74
2440 2550 4.923871 GTGACGATGTTGATGTTCTACTGT 59.076 41.667 0.00 0.00 0.00 3.55
2441 2551 5.061064 GTGACGATGTTGATGTTCTACTGTC 59.939 44.000 0.00 0.00 0.00 3.51
2442 2552 4.166523 ACGATGTTGATGTTCTACTGTCG 58.833 43.478 0.00 11.97 37.18 4.35
2443 2553 3.000674 CGATGTTGATGTTCTACTGTCGC 60.001 47.826 0.00 0.00 30.63 5.19
2444 2554 3.378911 TGTTGATGTTCTACTGTCGCA 57.621 42.857 0.00 0.00 0.00 5.10
2445 2555 3.057019 TGTTGATGTTCTACTGTCGCAC 58.943 45.455 0.00 0.00 0.00 5.34
2446 2556 1.977188 TGATGTTCTACTGTCGCACG 58.023 50.000 0.00 0.00 0.00 5.34
2447 2557 1.269166 GATGTTCTACTGTCGCACGG 58.731 55.000 0.00 0.00 0.00 4.94
2448 2558 0.736325 ATGTTCTACTGTCGCACGGC 60.736 55.000 0.00 0.00 0.00 5.68
2449 2559 1.080705 GTTCTACTGTCGCACGGCT 60.081 57.895 0.00 0.00 0.00 5.52
2450 2560 0.666577 GTTCTACTGTCGCACGGCTT 60.667 55.000 0.00 0.00 0.00 4.35
2451 2561 0.388134 TTCTACTGTCGCACGGCTTC 60.388 55.000 0.00 0.00 0.00 3.86
2452 2562 2.126618 TACTGTCGCACGGCTTCG 60.127 61.111 0.00 0.00 40.22 3.79
2465 2575 2.125512 CTTCGCCTAAGCACCGCT 60.126 61.111 0.00 0.00 42.56 5.52
2466 2576 1.141019 CTTCGCCTAAGCACCGCTA 59.859 57.895 0.00 0.00 38.25 4.26
2467 2577 1.146358 CTTCGCCTAAGCACCGCTAC 61.146 60.000 0.00 0.00 38.25 3.58
2468 2578 2.567564 TTCGCCTAAGCACCGCTACC 62.568 60.000 0.00 0.00 38.25 3.18
2469 2579 2.582436 GCCTAAGCACCGCTACCA 59.418 61.111 0.00 0.00 38.25 3.25
2470 2580 1.814169 GCCTAAGCACCGCTACCAC 60.814 63.158 0.00 0.00 38.25 4.16
2471 2581 1.153429 CCTAAGCACCGCTACCACC 60.153 63.158 0.00 0.00 38.25 4.61
2472 2582 1.594833 CTAAGCACCGCTACCACCA 59.405 57.895 0.00 0.00 38.25 4.17
2473 2583 0.739813 CTAAGCACCGCTACCACCAC 60.740 60.000 0.00 0.00 38.25 4.16
2474 2584 1.473497 TAAGCACCGCTACCACCACA 61.473 55.000 0.00 0.00 38.25 4.17
2475 2585 2.281208 GCACCGCTACCACCACAA 60.281 61.111 0.00 0.00 0.00 3.33
2476 2586 1.894756 GCACCGCTACCACCACAAA 60.895 57.895 0.00 0.00 0.00 2.83
2477 2587 1.448922 GCACCGCTACCACCACAAAA 61.449 55.000 0.00 0.00 0.00 2.44
2478 2588 1.025812 CACCGCTACCACCACAAAAA 58.974 50.000 0.00 0.00 0.00 1.94
2479 2589 1.611491 CACCGCTACCACCACAAAAAT 59.389 47.619 0.00 0.00 0.00 1.82
2480 2590 2.814919 CACCGCTACCACCACAAAAATA 59.185 45.455 0.00 0.00 0.00 1.40
2481 2591 3.442273 CACCGCTACCACCACAAAAATAT 59.558 43.478 0.00 0.00 0.00 1.28
2482 2592 3.442273 ACCGCTACCACCACAAAAATATG 59.558 43.478 0.00 0.00 0.00 1.78
2483 2593 3.442273 CCGCTACCACCACAAAAATATGT 59.558 43.478 0.00 0.00 0.00 2.29
2484 2594 4.438200 CCGCTACCACCACAAAAATATGTC 60.438 45.833 0.00 0.00 0.00 3.06
2485 2595 4.155099 CGCTACCACCACAAAAATATGTCA 59.845 41.667 0.00 0.00 0.00 3.58
2486 2596 5.335269 CGCTACCACCACAAAAATATGTCAA 60.335 40.000 0.00 0.00 0.00 3.18
2487 2597 5.861787 GCTACCACCACAAAAATATGTCAAC 59.138 40.000 0.00 0.00 0.00 3.18
2488 2598 6.294508 GCTACCACCACAAAAATATGTCAACT 60.295 38.462 0.00 0.00 0.00 3.16
2489 2599 7.094549 GCTACCACCACAAAAATATGTCAACTA 60.095 37.037 0.00 0.00 0.00 2.24
2490 2600 7.214467 ACCACCACAAAAATATGTCAACTAG 57.786 36.000 0.00 0.00 0.00 2.57
2491 2601 6.775629 ACCACCACAAAAATATGTCAACTAGT 59.224 34.615 0.00 0.00 0.00 2.57
2492 2602 7.083858 CCACCACAAAAATATGTCAACTAGTG 58.916 38.462 0.00 0.00 0.00 2.74
2493 2603 7.040755 CCACCACAAAAATATGTCAACTAGTGA 60.041 37.037 0.00 0.00 0.00 3.41
2510 2620 3.917072 GACCTTCTGTCAGTGACCC 57.083 57.895 20.43 0.00 43.85 4.46
2511 2621 1.343069 GACCTTCTGTCAGTGACCCT 58.657 55.000 20.43 0.00 43.85 4.34
2512 2622 1.001406 GACCTTCTGTCAGTGACCCTG 59.999 57.143 20.43 10.65 43.85 4.45
2523 2633 3.490348 CAGTGACCCTGAAAGAATTGGT 58.510 45.455 0.00 0.00 44.49 3.67
2524 2634 3.503748 CAGTGACCCTGAAAGAATTGGTC 59.496 47.826 0.00 0.00 44.49 4.02
2525 2635 3.138283 AGTGACCCTGAAAGAATTGGTCA 59.862 43.478 5.61 5.61 45.33 4.02
2526 2636 4.387026 TGACCCTGAAAGAATTGGTCAT 57.613 40.909 5.61 0.00 43.56 3.06
2527 2637 5.512942 TGACCCTGAAAGAATTGGTCATA 57.487 39.130 5.61 0.00 43.56 2.15
2528 2638 5.500234 TGACCCTGAAAGAATTGGTCATAG 58.500 41.667 5.61 0.00 43.56 2.23
2529 2639 5.250543 TGACCCTGAAAGAATTGGTCATAGA 59.749 40.000 5.61 0.00 43.56 1.98
2530 2640 6.069440 TGACCCTGAAAGAATTGGTCATAGAT 60.069 38.462 5.61 0.00 43.56 1.98
2531 2641 6.360618 ACCCTGAAAGAATTGGTCATAGATC 58.639 40.000 0.00 0.00 34.07 2.75
2532 2642 6.159398 ACCCTGAAAGAATTGGTCATAGATCT 59.841 38.462 0.00 0.00 34.07 2.75
2533 2643 7.348274 ACCCTGAAAGAATTGGTCATAGATCTA 59.652 37.037 4.57 4.57 34.07 1.98
2534 2644 8.381636 CCCTGAAAGAATTGGTCATAGATCTAT 58.618 37.037 9.57 9.57 34.07 1.98
2535 2645 9.217278 CCTGAAAGAATTGGTCATAGATCTATG 57.783 37.037 29.54 29.54 39.58 2.23
2536 2646 9.993454 CTGAAAGAATTGGTCATAGATCTATGA 57.007 33.333 32.49 32.49 42.55 2.15
2548 2658 7.901029 TCATAGATCTATGACCATTTCAGACC 58.099 38.462 32.49 0.00 44.87 3.85
2549 2659 7.510343 TCATAGATCTATGACCATTTCAGACCA 59.490 37.037 32.49 12.46 44.87 4.02
2550 2660 6.566079 AGATCTATGACCATTTCAGACCAA 57.434 37.500 0.00 0.00 37.77 3.67
2551 2661 7.146715 AGATCTATGACCATTTCAGACCAAT 57.853 36.000 0.00 0.00 37.77 3.16
2552 2662 7.580910 AGATCTATGACCATTTCAGACCAATT 58.419 34.615 0.00 0.00 37.77 2.32
2553 2663 7.501559 AGATCTATGACCATTTCAGACCAATTG 59.498 37.037 0.00 0.00 37.77 2.32
2554 2664 5.887598 TCTATGACCATTTCAGACCAATTGG 59.112 40.000 23.31 23.31 37.77 3.16
2555 2665 4.419282 ATGACCATTTCAGACCAATTGGT 58.581 39.130 30.23 30.23 43.69 3.67
2568 2678 3.052036 CCAATTGGTCAAAAGCTGTTCG 58.948 45.455 16.90 0.00 0.00 3.95
2569 2679 3.052036 CAATTGGTCAAAAGCTGTTCGG 58.948 45.455 0.00 0.00 0.00 4.30
2570 2680 1.028905 TTGGTCAAAAGCTGTTCGGG 58.971 50.000 0.00 0.00 0.00 5.14
2571 2681 0.821711 TGGTCAAAAGCTGTTCGGGG 60.822 55.000 0.00 0.00 0.00 5.73
2572 2682 1.524008 GGTCAAAAGCTGTTCGGGGG 61.524 60.000 0.00 0.00 0.00 5.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 36 6.113411 CCCCTGTACTGAACTTGTATTTAGG 58.887 44.000 0.60 0.00 0.00 2.69
74 90 2.932614 CTCGTTGATGATCTGGGTTGTC 59.067 50.000 0.00 0.00 0.00 3.18
248 268 3.636300 TGAATTTGCAAGGCAGTAGTTGT 59.364 39.130 0.00 0.00 40.61 3.32
596 685 1.522355 CTCGCCATCGCCATGACTT 60.522 57.895 0.00 0.00 35.26 3.01
683 785 2.317609 GCCGAGAAGCAGCGAACAA 61.318 57.895 0.00 0.00 0.00 2.83
705 807 2.375509 AGTAGGTGGAAACCAGGGAAAG 59.624 50.000 0.00 0.00 32.34 2.62
738 840 3.075005 GGGAGAGGCTGTACGGCA 61.075 66.667 27.29 0.00 41.46 5.69
739 841 3.851128 GGGGAGAGGCTGTACGGC 61.851 72.222 18.83 18.83 38.75 5.68
740 842 2.042843 AGGGGAGAGGCTGTACGG 60.043 66.667 0.00 0.00 0.00 4.02
741 843 1.076632 AGAGGGGAGAGGCTGTACG 60.077 63.158 0.00 0.00 0.00 3.67
742 844 1.104577 CGAGAGGGGAGAGGCTGTAC 61.105 65.000 0.00 0.00 0.00 2.90
743 845 1.227664 CGAGAGGGGAGAGGCTGTA 59.772 63.158 0.00 0.00 0.00 2.74
744 846 2.043450 CGAGAGGGGAGAGGCTGT 60.043 66.667 0.00 0.00 0.00 4.40
745 847 0.395862 TAACGAGAGGGGAGAGGCTG 60.396 60.000 0.00 0.00 0.00 4.85
746 848 0.106419 CTAACGAGAGGGGAGAGGCT 60.106 60.000 0.00 0.00 0.00 4.58
747 849 1.110518 CCTAACGAGAGGGGAGAGGC 61.111 65.000 0.00 0.00 32.39 4.70
748 850 3.119225 CCTAACGAGAGGGGAGAGG 57.881 63.158 0.00 0.00 32.39 3.69
800 902 1.496429 GGTGGATCTCAATGATGGGGT 59.504 52.381 0.00 0.00 35.14 4.95
801 903 1.779092 AGGTGGATCTCAATGATGGGG 59.221 52.381 0.00 0.00 35.14 4.96
808 910 2.951690 GGGGGAGGTGGATCTCAAT 58.048 57.895 0.00 0.00 35.58 2.57
846 949 4.745751 TAGGGCCGCCGTTTGACG 62.746 66.667 10.44 0.00 42.11 4.35
847 950 2.818274 CTAGGGCCGCCGTTTGAC 60.818 66.667 10.44 0.00 0.00 3.18
848 951 4.090588 CCTAGGGCCGCCGTTTGA 62.091 66.667 10.44 0.00 0.00 2.69
863 966 2.116772 TCGAACGTGGAGACCCCT 59.883 61.111 0.00 0.00 35.38 4.79
877 980 1.679977 CCCCTTGTCCCTACGTCGA 60.680 63.158 0.00 0.00 0.00 4.20
910 1013 1.610624 GGTTTCTTCGATCCACAGGCA 60.611 52.381 0.00 0.00 0.00 4.75
916 1019 1.066143 GCCTGAGGTTTCTTCGATCCA 60.066 52.381 0.00 0.00 0.00 3.41
933 1036 3.266772 TGTCACCCATAATTCTCTTGCCT 59.733 43.478 0.00 0.00 0.00 4.75
954 1057 1.361668 CGCCCGATCCAGAAGTTGTG 61.362 60.000 0.00 0.00 0.00 3.33
958 1061 4.162690 GCCGCCCGATCCAGAAGT 62.163 66.667 0.00 0.00 0.00 3.01
981 1084 2.088104 TCATTGCCTCTAGGTCCGAT 57.912 50.000 0.00 0.00 37.57 4.18
1307 1410 3.517602 TCTATCGACGATGGTTTTGTGG 58.482 45.455 20.42 0.00 0.00 4.17
1401 1504 0.251209 ACTCTCCCACAGTAGACGCA 60.251 55.000 0.00 0.00 0.00 5.24
1447 1550 6.780522 ACCCTAGCAAAGTTTCCTTCAAAATA 59.219 34.615 0.00 0.00 0.00 1.40
1522 1625 3.181454 ACGGTGTCTTTCTTTCTGACCAT 60.181 43.478 0.00 0.00 0.00 3.55
1589 1692 3.107601 AGGTATCCACATACAGCACACT 58.892 45.455 0.00 0.00 37.24 3.55
1818 1927 4.141937 TGGTTAATATCGTTGCTGAGCTCT 60.142 41.667 16.19 0.00 0.00 4.09
1861 1970 7.343057 CCTTTTTCTATTATTCTTTGCCTCCCT 59.657 37.037 0.00 0.00 0.00 4.20
1870 1979 5.828328 CGGCTCCCCTTTTTCTATTATTCTT 59.172 40.000 0.00 0.00 0.00 2.52
1895 2005 0.683973 AGCTGAAGGGTCTGTCACAG 59.316 55.000 0.00 0.00 0.00 3.66
1919 2029 1.131126 CTGTTGTTGCCGGCTTGATAG 59.869 52.381 29.70 14.68 0.00 2.08
1977 2087 1.448540 CGATGGGCTGACTGGTGTC 60.449 63.158 0.00 0.00 43.20 3.67
1994 2104 1.946768 TCTTTGTTTCCTGCTTGGTCG 59.053 47.619 0.00 0.00 37.07 4.79
2029 2139 4.827304 TGTTTTTGTCGCTGATCATCAA 57.173 36.364 0.00 0.00 0.00 2.57
2030 2140 4.827304 TTGTTTTTGTCGCTGATCATCA 57.173 36.364 0.00 0.00 0.00 3.07
2036 2146 2.302260 TCCCATTGTTTTTGTCGCTGA 58.698 42.857 0.00 0.00 0.00 4.26
2051 2161 1.812571 GCATTGTCGTGTTCTTCCCAT 59.187 47.619 0.00 0.00 0.00 4.00
2070 2180 1.154035 CGCATCGGAGTTTTTGGGC 60.154 57.895 0.00 0.00 0.00 5.36
2127 2237 3.000727 CGTTCCCCAACAATAGACTCAC 58.999 50.000 0.00 0.00 32.14 3.51
2136 2246 5.374921 TGAAATTACTACGTTCCCCAACAA 58.625 37.500 0.00 0.00 32.14 2.83
2140 2250 6.956202 TTTTTGAAATTACTACGTTCCCCA 57.044 33.333 0.00 0.00 0.00 4.96
2163 2273 5.865159 ATCTTGCGTGTGCGTAGGATTTTT 61.865 41.667 0.00 0.00 44.18 1.94
2164 2274 4.419949 ATCTTGCGTGTGCGTAGGATTTT 61.420 43.478 0.00 0.00 44.18 1.82
2165 2275 2.935238 ATCTTGCGTGTGCGTAGGATTT 60.935 45.455 0.00 0.00 44.18 2.17
2166 2276 1.405526 ATCTTGCGTGTGCGTAGGATT 60.406 47.619 0.00 0.00 44.18 3.01
2174 2284 0.179181 CACCATGATCTTGCGTGTGC 60.179 55.000 15.81 0.00 43.20 4.57
2175 2285 1.441738 TCACCATGATCTTGCGTGTG 58.558 50.000 19.89 14.96 0.00 3.82
2176 2286 2.011947 CATCACCATGATCTTGCGTGT 58.988 47.619 19.89 6.63 34.28 4.49
2177 2287 1.268386 GCATCACCATGATCTTGCGTG 60.268 52.381 17.02 17.02 34.28 5.34
2178 2288 1.019673 GCATCACCATGATCTTGCGT 58.980 50.000 3.07 0.87 34.28 5.24
2179 2289 1.018910 TGCATCACCATGATCTTGCG 58.981 50.000 3.07 0.30 34.28 4.85
2180 2290 3.366070 GCTATGCATCACCATGATCTTGC 60.366 47.826 0.19 0.00 34.28 4.01
2181 2291 3.818773 TGCTATGCATCACCATGATCTTG 59.181 43.478 0.19 1.60 34.28 3.02
2182 2292 4.094830 TGCTATGCATCACCATGATCTT 57.905 40.909 0.19 0.00 34.28 2.40
2183 2293 3.782656 TGCTATGCATCACCATGATCT 57.217 42.857 0.19 0.00 34.28 2.75
2184 2294 4.457949 TCATTGCTATGCATCACCATGATC 59.542 41.667 0.19 0.00 38.76 2.92
2185 2295 4.403734 TCATTGCTATGCATCACCATGAT 58.596 39.130 0.19 0.00 38.76 2.45
2186 2296 3.818773 CTCATTGCTATGCATCACCATGA 59.181 43.478 0.19 8.77 38.76 3.07
2187 2297 3.818773 TCTCATTGCTATGCATCACCATG 59.181 43.478 0.19 4.57 38.76 3.66
2188 2298 4.072839 CTCTCATTGCTATGCATCACCAT 58.927 43.478 0.19 0.00 38.76 3.55
2189 2299 3.473625 CTCTCATTGCTATGCATCACCA 58.526 45.455 0.19 0.00 38.76 4.17
2190 2300 2.812591 CCTCTCATTGCTATGCATCACC 59.187 50.000 0.19 0.00 38.76 4.02
2191 2301 2.812591 CCCTCTCATTGCTATGCATCAC 59.187 50.000 0.19 0.00 38.76 3.06
2192 2302 2.224695 CCCCTCTCATTGCTATGCATCA 60.225 50.000 0.19 0.00 38.76 3.07
2193 2303 2.039480 TCCCCTCTCATTGCTATGCATC 59.961 50.000 0.19 0.00 38.76 3.91
2194 2304 2.040012 CTCCCCTCTCATTGCTATGCAT 59.960 50.000 3.79 3.79 38.76 3.96
2195 2305 1.419012 CTCCCCTCTCATTGCTATGCA 59.581 52.381 3.00 0.00 36.47 3.96
2196 2306 1.696336 TCTCCCCTCTCATTGCTATGC 59.304 52.381 3.00 0.00 0.00 3.14
2197 2307 2.971330 ACTCTCCCCTCTCATTGCTATG 59.029 50.000 1.30 1.30 0.00 2.23
2198 2308 2.971330 CACTCTCCCCTCTCATTGCTAT 59.029 50.000 0.00 0.00 0.00 2.97
2199 2309 2.292521 ACACTCTCCCCTCTCATTGCTA 60.293 50.000 0.00 0.00 0.00 3.49
2200 2310 1.202330 CACTCTCCCCTCTCATTGCT 58.798 55.000 0.00 0.00 0.00 3.91
2201 2311 0.908198 ACACTCTCCCCTCTCATTGC 59.092 55.000 0.00 0.00 0.00 3.56
2202 2312 1.905215 ACACACTCTCCCCTCTCATTG 59.095 52.381 0.00 0.00 0.00 2.82
2203 2313 2.183679 GACACACTCTCCCCTCTCATT 58.816 52.381 0.00 0.00 0.00 2.57
2204 2314 1.621072 GGACACACTCTCCCCTCTCAT 60.621 57.143 0.00 0.00 0.00 2.90
2205 2315 0.251832 GGACACACTCTCCCCTCTCA 60.252 60.000 0.00 0.00 0.00 3.27
2206 2316 0.251832 TGGACACACTCTCCCCTCTC 60.252 60.000 0.00 0.00 0.00 3.20
2207 2317 0.543174 GTGGACACACTCTCCCCTCT 60.543 60.000 0.00 0.00 44.29 3.69
2208 2318 1.878656 CGTGGACACACTCTCCCCTC 61.879 65.000 3.12 0.00 45.50 4.30
2209 2319 1.908793 CGTGGACACACTCTCCCCT 60.909 63.158 3.12 0.00 45.50 4.79
2210 2320 0.896940 TACGTGGACACACTCTCCCC 60.897 60.000 0.00 0.00 45.50 4.81
2211 2321 0.243095 GTACGTGGACACACTCTCCC 59.757 60.000 0.00 0.00 45.50 4.30
2212 2322 0.243095 GGTACGTGGACACACTCTCC 59.757 60.000 0.00 0.00 45.50 3.71
2213 2323 0.243095 GGGTACGTGGACACACTCTC 59.757 60.000 0.00 0.00 45.50 3.20
2214 2324 0.178970 AGGGTACGTGGACACACTCT 60.179 55.000 0.00 0.00 45.50 3.24
2215 2325 0.243095 GAGGGTACGTGGACACACTC 59.757 60.000 2.84 2.84 45.50 3.51
2216 2326 1.521450 CGAGGGTACGTGGACACACT 61.521 60.000 0.00 0.00 45.50 3.55
2217 2327 1.080974 CGAGGGTACGTGGACACAC 60.081 63.158 0.00 0.00 44.23 3.82
2218 2328 0.250684 TACGAGGGTACGTGGACACA 60.251 55.000 0.00 0.00 46.02 3.72
2219 2329 0.449388 CTACGAGGGTACGTGGACAC 59.551 60.000 0.00 0.00 44.98 3.67
2220 2330 0.324614 TCTACGAGGGTACGTGGACA 59.675 55.000 0.00 0.00 45.53 4.02
2221 2331 3.159298 TCTACGAGGGTACGTGGAC 57.841 57.895 0.00 0.00 45.53 4.02
2223 2333 2.101700 GGTCTACGAGGGTACGTGG 58.898 63.158 0.00 0.00 46.02 4.94
2232 2342 3.296057 GCTTCTGCTTTCGGTCTACGAG 61.296 54.545 0.00 0.00 43.96 4.18
2233 2343 1.402456 GCTTCTGCTTTCGGTCTACGA 60.402 52.381 0.00 0.00 42.56 3.43
2234 2344 0.992802 GCTTCTGCTTTCGGTCTACG 59.007 55.000 0.00 0.00 39.13 3.51
2235 2345 0.992802 CGCTTCTGCTTTCGGTCTAC 59.007 55.000 0.00 0.00 36.97 2.59
2236 2346 0.601558 ACGCTTCTGCTTTCGGTCTA 59.398 50.000 0.00 0.00 36.97 2.59
2237 2347 0.946221 CACGCTTCTGCTTTCGGTCT 60.946 55.000 0.00 0.00 36.97 3.85
2238 2348 0.944311 TCACGCTTCTGCTTTCGGTC 60.944 55.000 0.00 0.00 36.97 4.79
2239 2349 0.946221 CTCACGCTTCTGCTTTCGGT 60.946 55.000 0.00 0.00 36.97 4.69
2240 2350 1.784062 CTCACGCTTCTGCTTTCGG 59.216 57.895 0.00 0.00 36.97 4.30
2241 2351 1.131420 GCTCACGCTTCTGCTTTCG 59.869 57.895 0.00 0.00 36.97 3.46
2242 2352 0.110464 GTGCTCACGCTTCTGCTTTC 60.110 55.000 0.00 0.00 36.97 2.62
2243 2353 0.815213 TGTGCTCACGCTTCTGCTTT 60.815 50.000 0.00 0.00 36.97 3.51
2244 2354 0.815213 TTGTGCTCACGCTTCTGCTT 60.815 50.000 0.00 0.00 36.97 3.91
2245 2355 1.227645 TTGTGCTCACGCTTCTGCT 60.228 52.632 0.00 0.00 36.97 4.24
2246 2356 1.082496 GTTGTGCTCACGCTTCTGC 60.082 57.895 0.00 0.00 36.97 4.26
2247 2357 1.202568 CGTTGTGCTCACGCTTCTG 59.797 57.895 0.00 0.00 36.97 3.02
2248 2358 3.630204 CGTTGTGCTCACGCTTCT 58.370 55.556 0.00 0.00 36.97 2.85
2253 2363 1.823260 TTAACCGCGTTGTGCTCACG 61.823 55.000 4.92 6.44 43.27 4.35
2254 2364 0.515564 ATTAACCGCGTTGTGCTCAC 59.484 50.000 4.92 0.00 43.27 3.51
2255 2365 2.081725 TATTAACCGCGTTGTGCTCA 57.918 45.000 4.92 0.00 43.27 4.26
2256 2366 3.800506 ACTATATTAACCGCGTTGTGCTC 59.199 43.478 4.92 0.00 43.27 4.26
2257 2367 3.788937 ACTATATTAACCGCGTTGTGCT 58.211 40.909 4.92 0.00 43.27 4.40
2258 2368 3.361339 CGACTATATTAACCGCGTTGTGC 60.361 47.826 4.92 0.00 41.47 4.57
2259 2369 3.792956 ACGACTATATTAACCGCGTTGTG 59.207 43.478 4.92 0.00 0.00 3.33
2260 2370 4.032703 ACGACTATATTAACCGCGTTGT 57.967 40.909 4.92 0.00 0.00 3.32
2261 2371 4.085688 CGTACGACTATATTAACCGCGTTG 59.914 45.833 10.44 0.00 0.00 4.10
2262 2372 4.211389 CGTACGACTATATTAACCGCGTT 58.789 43.478 10.44 1.95 0.00 4.84
2263 2373 3.247648 ACGTACGACTATATTAACCGCGT 59.752 43.478 24.41 0.00 0.00 6.01
2264 2374 3.799035 ACGTACGACTATATTAACCGCG 58.201 45.455 24.41 0.00 0.00 6.46
2265 2375 5.023551 AGACGTACGACTATATTAACCGC 57.976 43.478 24.41 0.00 0.00 5.68
2266 2376 6.571520 GTGAAGACGTACGACTATATTAACCG 59.428 42.308 24.41 0.00 0.00 4.44
2267 2377 6.571520 CGTGAAGACGTACGACTATATTAACC 59.428 42.308 24.41 3.64 42.54 2.85
2268 2378 7.337718 TCGTGAAGACGTACGACTATATTAAC 58.662 38.462 24.41 8.30 46.20 2.01
2269 2379 7.463469 TCGTGAAGACGTACGACTATATTAA 57.537 36.000 24.41 3.62 46.20 1.40
2271 2381 5.973651 TCGTGAAGACGTACGACTATATT 57.026 39.130 24.41 5.76 46.20 1.28
2279 2389 2.429061 GTCAGATCGTGAAGACGTACG 58.571 52.381 15.01 15.01 46.20 3.67
2280 2390 2.783333 GGTCAGATCGTGAAGACGTAC 58.217 52.381 0.00 0.00 46.20 3.67
2281 2391 1.395954 CGGTCAGATCGTGAAGACGTA 59.604 52.381 0.00 0.00 46.20 3.57
2282 2392 0.168348 CGGTCAGATCGTGAAGACGT 59.832 55.000 0.00 0.00 46.20 4.34
2283 2393 2.851386 GATCGGTCAGATCGTGAAGACG 60.851 54.545 2.26 0.00 45.35 4.18
2284 2394 2.722071 GATCGGTCAGATCGTGAAGAC 58.278 52.381 2.26 0.00 45.35 3.01
2293 2403 4.369182 GTTCGGTATTTGATCGGTCAGAT 58.631 43.478 6.94 6.94 43.51 2.90
2294 2404 3.732774 CGTTCGGTATTTGATCGGTCAGA 60.733 47.826 0.00 0.00 35.39 3.27
2295 2405 2.534349 CGTTCGGTATTTGATCGGTCAG 59.466 50.000 0.00 0.00 35.39 3.51
2296 2406 2.532235 CGTTCGGTATTTGATCGGTCA 58.468 47.619 0.00 0.00 0.00 4.02
2297 2407 1.257155 GCGTTCGGTATTTGATCGGTC 59.743 52.381 0.00 0.00 0.00 4.79
2298 2408 1.283736 GCGTTCGGTATTTGATCGGT 58.716 50.000 0.00 0.00 0.00 4.69
2299 2409 1.005347 GTGCGTTCGGTATTTGATCGG 60.005 52.381 0.00 0.00 0.00 4.18
2300 2410 1.330818 CGTGCGTTCGGTATTTGATCG 60.331 52.381 0.00 0.00 0.00 3.69
2301 2411 1.005347 CCGTGCGTTCGGTATTTGATC 60.005 52.381 11.17 0.00 44.77 2.92
2302 2412 1.003851 CCGTGCGTTCGGTATTTGAT 58.996 50.000 11.17 0.00 44.77 2.57
2303 2413 2.447408 CCGTGCGTTCGGTATTTGA 58.553 52.632 11.17 0.00 44.77 2.69
2320 2430 2.435059 GCTGAACTCGGAGGTGCC 60.435 66.667 10.23 0.00 0.00 5.01
2321 2431 2.029844 GTGCTGAACTCGGAGGTGC 61.030 63.158 10.23 4.15 0.00 5.01
2322 2432 0.946221 GTGTGCTGAACTCGGAGGTG 60.946 60.000 10.23 0.00 0.00 4.00
2323 2433 1.367840 GTGTGCTGAACTCGGAGGT 59.632 57.895 10.23 1.51 0.00 3.85
2324 2434 1.734477 CGTGTGCTGAACTCGGAGG 60.734 63.158 10.23 0.00 41.05 4.30
2325 2435 3.848142 CGTGTGCTGAACTCGGAG 58.152 61.111 2.83 2.83 41.05 4.63
2329 2439 1.933853 AGTTGAACGTGTGCTGAACTC 59.066 47.619 0.00 0.00 0.00 3.01
2330 2440 1.933853 GAGTTGAACGTGTGCTGAACT 59.066 47.619 0.00 0.00 0.00 3.01
2331 2441 1.332028 CGAGTTGAACGTGTGCTGAAC 60.332 52.381 0.00 0.00 0.00 3.18
2332 2442 0.927537 CGAGTTGAACGTGTGCTGAA 59.072 50.000 0.00 0.00 0.00 3.02
2333 2443 0.101579 TCGAGTTGAACGTGTGCTGA 59.898 50.000 0.00 0.00 0.00 4.26
2334 2444 0.229753 GTCGAGTTGAACGTGTGCTG 59.770 55.000 0.00 0.00 0.00 4.41
2335 2445 0.179121 TGTCGAGTTGAACGTGTGCT 60.179 50.000 0.00 0.00 0.00 4.40
2336 2446 0.648441 TTGTCGAGTTGAACGTGTGC 59.352 50.000 0.00 0.00 0.00 4.57
2337 2447 1.330818 CGTTGTCGAGTTGAACGTGTG 60.331 52.381 9.58 0.00 38.10 3.82
2338 2448 0.918619 CGTTGTCGAGTTGAACGTGT 59.081 50.000 9.58 0.00 38.10 4.49
2339 2449 3.684355 CGTTGTCGAGTTGAACGTG 57.316 52.632 9.58 0.00 38.10 4.49
2341 2451 0.501435 GGACGTTGTCGAGTTGAACG 59.499 55.000 14.10 14.10 46.12 3.95
2342 2452 0.857287 GGGACGTTGTCGAGTTGAAC 59.143 55.000 0.00 0.00 40.62 3.18
2343 2453 0.748450 AGGGACGTTGTCGAGTTGAA 59.252 50.000 0.00 0.00 40.62 2.69
2344 2454 0.313043 GAGGGACGTTGTCGAGTTGA 59.687 55.000 0.00 0.00 40.62 3.18
2345 2455 1.002250 CGAGGGACGTTGTCGAGTTG 61.002 60.000 8.90 0.00 40.62 3.16
2346 2456 1.168407 TCGAGGGACGTTGTCGAGTT 61.168 55.000 12.19 0.00 43.13 3.01
2347 2457 1.168407 TTCGAGGGACGTTGTCGAGT 61.168 55.000 14.73 0.00 43.16 4.18
2348 2458 0.728466 GTTCGAGGGACGTTGTCGAG 60.728 60.000 14.73 0.00 43.16 4.04
2349 2459 1.168407 AGTTCGAGGGACGTTGTCGA 61.168 55.000 12.19 12.19 40.81 4.20
2350 2460 0.728466 GAGTTCGAGGGACGTTGTCG 60.728 60.000 8.39 8.39 43.13 4.35
2351 2461 0.388263 GGAGTTCGAGGGACGTTGTC 60.388 60.000 0.00 0.00 43.13 3.18
2352 2462 1.664306 GGAGTTCGAGGGACGTTGT 59.336 57.895 0.00 0.00 43.13 3.32
2353 2463 1.443872 CGGAGTTCGAGGGACGTTG 60.444 63.158 0.00 0.00 42.43 4.10
2354 2464 1.601759 TCGGAGTTCGAGGGACGTT 60.602 57.895 0.00 0.00 43.74 3.99
2355 2465 2.033141 TCGGAGTTCGAGGGACGT 59.967 61.111 0.00 0.00 43.74 4.34
2363 2473 2.278857 CGGCTGGATCGGAGTTCG 60.279 66.667 0.00 0.00 40.90 3.95
2364 2474 1.066587 CTCGGCTGGATCGGAGTTC 59.933 63.158 0.00 0.00 0.00 3.01
2365 2475 3.082579 GCTCGGCTGGATCGGAGTT 62.083 63.158 0.00 0.00 36.27 3.01
2366 2476 3.532155 GCTCGGCTGGATCGGAGT 61.532 66.667 0.00 0.00 36.27 3.85
2367 2477 2.303549 AAAGCTCGGCTGGATCGGAG 62.304 60.000 0.00 0.00 39.62 4.63
2368 2478 2.359169 AAAGCTCGGCTGGATCGGA 61.359 57.895 0.00 0.00 39.62 4.55
2369 2479 2.176273 CAAAGCTCGGCTGGATCGG 61.176 63.158 0.00 0.00 39.62 4.18
2370 2480 1.150567 CTCAAAGCTCGGCTGGATCG 61.151 60.000 0.00 0.00 39.62 3.69
2371 2481 0.813210 CCTCAAAGCTCGGCTGGATC 60.813 60.000 0.00 0.00 39.62 3.36
2372 2482 1.222936 CCTCAAAGCTCGGCTGGAT 59.777 57.895 0.00 0.00 39.62 3.41
2373 2483 1.480212 TTCCTCAAAGCTCGGCTGGA 61.480 55.000 0.00 0.00 39.62 3.86
2374 2484 1.003355 TTCCTCAAAGCTCGGCTGG 60.003 57.895 0.00 0.00 39.62 4.85
2375 2485 0.036952 TCTTCCTCAAAGCTCGGCTG 60.037 55.000 0.00 0.00 39.62 4.85
2376 2486 0.248843 CTCTTCCTCAAAGCTCGGCT 59.751 55.000 0.00 0.00 42.56 5.52
2377 2487 0.036858 ACTCTTCCTCAAAGCTCGGC 60.037 55.000 0.00 0.00 34.76 5.54
2378 2488 2.342179 GAACTCTTCCTCAAAGCTCGG 58.658 52.381 0.00 0.00 34.76 4.63
2379 2489 2.342179 GGAACTCTTCCTCAAAGCTCG 58.658 52.381 0.00 0.00 46.57 5.03
2390 2500 2.370281 TCGTGCTGATGGAACTCTTC 57.630 50.000 0.00 0.00 0.00 2.87
2400 2510 0.674581 CACCACACCATCGTGCTGAT 60.675 55.000 0.00 0.00 44.40 2.90
2401 2511 1.301637 CACCACACCATCGTGCTGA 60.302 57.895 0.00 0.00 44.40 4.26
2402 2512 1.301637 TCACCACACCATCGTGCTG 60.302 57.895 0.00 0.00 44.40 4.41
2403 2513 1.301716 GTCACCACACCATCGTGCT 60.302 57.895 0.00 0.00 44.40 4.40
2404 2514 2.667318 CGTCACCACACCATCGTGC 61.667 63.158 0.00 0.00 44.40 5.34
2405 2515 0.389817 ATCGTCACCACACCATCGTG 60.390 55.000 0.00 0.00 46.11 4.35
2406 2516 0.389817 CATCGTCACCACACCATCGT 60.390 55.000 0.00 0.00 0.00 3.73
2407 2517 0.389817 ACATCGTCACCACACCATCG 60.390 55.000 0.00 0.00 0.00 3.84
2408 2518 1.464608 CAACATCGTCACCACACCATC 59.535 52.381 0.00 0.00 0.00 3.51
2409 2519 1.071542 TCAACATCGTCACCACACCAT 59.928 47.619 0.00 0.00 0.00 3.55
2410 2520 0.466124 TCAACATCGTCACCACACCA 59.534 50.000 0.00 0.00 0.00 4.17
2411 2521 1.464608 CATCAACATCGTCACCACACC 59.535 52.381 0.00 0.00 0.00 4.16
2412 2522 2.143122 ACATCAACATCGTCACCACAC 58.857 47.619 0.00 0.00 0.00 3.82
2413 2523 2.542020 ACATCAACATCGTCACCACA 57.458 45.000 0.00 0.00 0.00 4.17
2414 2524 3.067106 AGAACATCAACATCGTCACCAC 58.933 45.455 0.00 0.00 0.00 4.16
2415 2525 3.401033 AGAACATCAACATCGTCACCA 57.599 42.857 0.00 0.00 0.00 4.17
2416 2526 4.327357 CAGTAGAACATCAACATCGTCACC 59.673 45.833 0.00 0.00 0.00 4.02
2417 2527 4.923871 ACAGTAGAACATCAACATCGTCAC 59.076 41.667 0.00 0.00 0.00 3.67
2418 2528 5.134202 ACAGTAGAACATCAACATCGTCA 57.866 39.130 0.00 0.00 0.00 4.35
2419 2529 4.263209 CGACAGTAGAACATCAACATCGTC 59.737 45.833 0.00 0.00 0.00 4.20
2420 2530 4.166523 CGACAGTAGAACATCAACATCGT 58.833 43.478 0.00 0.00 0.00 3.73
2421 2531 3.000674 GCGACAGTAGAACATCAACATCG 60.001 47.826 0.00 0.00 0.00 3.84
2422 2532 3.926527 TGCGACAGTAGAACATCAACATC 59.073 43.478 0.00 0.00 0.00 3.06
2423 2533 3.679980 GTGCGACAGTAGAACATCAACAT 59.320 43.478 0.00 0.00 0.00 2.71
2424 2534 3.057019 GTGCGACAGTAGAACATCAACA 58.943 45.455 0.00 0.00 0.00 3.33
2425 2535 2.090658 CGTGCGACAGTAGAACATCAAC 59.909 50.000 0.00 0.00 0.00 3.18
2426 2536 2.324860 CGTGCGACAGTAGAACATCAA 58.675 47.619 0.00 0.00 0.00 2.57
2427 2537 1.402325 CCGTGCGACAGTAGAACATCA 60.402 52.381 0.00 0.00 0.00 3.07
2428 2538 1.269166 CCGTGCGACAGTAGAACATC 58.731 55.000 0.00 0.00 0.00 3.06
2429 2539 0.736325 GCCGTGCGACAGTAGAACAT 60.736 55.000 0.00 0.00 0.00 2.71
2430 2540 1.372499 GCCGTGCGACAGTAGAACA 60.372 57.895 0.00 0.00 0.00 3.18
2431 2541 0.666577 AAGCCGTGCGACAGTAGAAC 60.667 55.000 0.00 0.00 0.00 3.01
2432 2542 0.388134 GAAGCCGTGCGACAGTAGAA 60.388 55.000 0.00 0.00 0.00 2.10
2433 2543 1.211969 GAAGCCGTGCGACAGTAGA 59.788 57.895 0.00 0.00 0.00 2.59
2434 2544 2.152699 CGAAGCCGTGCGACAGTAG 61.153 63.158 0.00 0.00 0.00 2.57
2435 2545 2.126618 CGAAGCCGTGCGACAGTA 60.127 61.111 0.00 0.00 0.00 2.74
2448 2558 1.141019 TAGCGGTGCTTAGGCGAAG 59.859 57.895 2.68 2.68 40.44 3.79
2449 2559 1.153706 GTAGCGGTGCTTAGGCGAA 60.154 57.895 0.00 0.00 40.44 4.70
2450 2560 2.493030 GTAGCGGTGCTTAGGCGA 59.507 61.111 0.00 0.00 40.44 5.54
2451 2561 2.585247 GGTAGCGGTGCTTAGGCG 60.585 66.667 2.01 0.00 40.44 5.52
2452 2562 1.814169 GTGGTAGCGGTGCTTAGGC 60.814 63.158 2.01 0.00 40.44 3.93
2453 2563 1.153429 GGTGGTAGCGGTGCTTAGG 60.153 63.158 2.01 0.00 40.44 2.69
2454 2564 0.739813 GTGGTGGTAGCGGTGCTTAG 60.740 60.000 2.01 0.00 40.44 2.18
2455 2565 1.294138 GTGGTGGTAGCGGTGCTTA 59.706 57.895 2.01 0.00 40.44 3.09
2456 2566 2.032071 GTGGTGGTAGCGGTGCTT 59.968 61.111 2.01 0.00 40.44 3.91
2457 2567 2.332312 TTTGTGGTGGTAGCGGTGCT 62.332 55.000 2.01 0.00 43.41 4.40
2458 2568 1.448922 TTTTGTGGTGGTAGCGGTGC 61.449 55.000 0.00 0.00 0.00 5.01
2459 2569 1.025812 TTTTTGTGGTGGTAGCGGTG 58.974 50.000 0.00 0.00 0.00 4.94
2460 2570 1.989706 ATTTTTGTGGTGGTAGCGGT 58.010 45.000 0.00 0.00 0.00 5.68
2461 2571 3.442273 ACATATTTTTGTGGTGGTAGCGG 59.558 43.478 0.00 0.00 0.00 5.52
2462 2572 4.155099 TGACATATTTTTGTGGTGGTAGCG 59.845 41.667 0.00 0.00 0.00 4.26
2463 2573 5.637006 TGACATATTTTTGTGGTGGTAGC 57.363 39.130 0.00 0.00 0.00 3.58
2464 2574 7.214467 AGTTGACATATTTTTGTGGTGGTAG 57.786 36.000 0.00 0.00 0.00 3.18
2465 2575 7.940137 ACTAGTTGACATATTTTTGTGGTGGTA 59.060 33.333 0.00 0.00 0.00 3.25
2466 2576 6.775629 ACTAGTTGACATATTTTTGTGGTGGT 59.224 34.615 0.00 0.00 0.00 4.16
2467 2577 7.040755 TCACTAGTTGACATATTTTTGTGGTGG 60.041 37.037 0.00 0.00 0.00 4.61
2468 2578 7.870826 TCACTAGTTGACATATTTTTGTGGTG 58.129 34.615 0.00 0.00 0.00 4.17
2493 2603 3.560226 AGGGTCACTGACAGAAGGT 57.440 52.632 10.08 0.00 33.68 3.50
2503 2613 3.756117 GACCAATTCTTTCAGGGTCACT 58.244 45.455 0.00 0.00 45.70 3.41
2506 2616 5.745227 TCTATGACCAATTCTTTCAGGGTC 58.255 41.667 0.00 0.00 46.40 4.46
2507 2617 5.779241 TCTATGACCAATTCTTTCAGGGT 57.221 39.130 0.00 0.00 33.78 4.34
2508 2618 6.599445 AGATCTATGACCAATTCTTTCAGGG 58.401 40.000 0.00 0.00 0.00 4.45
2509 2619 9.217278 CATAGATCTATGACCAATTCTTTCAGG 57.783 37.037 31.04 4.05 44.22 3.86
2510 2620 9.993454 TCATAGATCTATGACCAATTCTTTCAG 57.007 33.333 32.49 9.52 44.87 3.02
2523 2633 7.510343 TGGTCTGAAATGGTCATAGATCTATGA 59.490 37.037 32.49 32.49 46.81 2.15
2524 2634 7.674120 TGGTCTGAAATGGTCATAGATCTATG 58.326 38.462 29.54 29.54 43.16 2.23
2525 2635 7.862274 TGGTCTGAAATGGTCATAGATCTAT 57.138 36.000 9.57 9.57 35.07 1.98
2526 2636 7.675161 TTGGTCTGAAATGGTCATAGATCTA 57.325 36.000 4.57 4.57 35.07 1.98
2527 2637 6.566079 TTGGTCTGAAATGGTCATAGATCT 57.434 37.500 0.00 0.00 35.07 2.75
2528 2638 7.255381 CCAATTGGTCTGAAATGGTCATAGATC 60.255 40.741 16.90 0.00 35.07 2.75
2529 2639 6.548622 CCAATTGGTCTGAAATGGTCATAGAT 59.451 38.462 16.90 0.00 35.07 1.98
2530 2640 5.887598 CCAATTGGTCTGAAATGGTCATAGA 59.112 40.000 16.90 0.00 35.07 1.98
2531 2641 6.140303 CCAATTGGTCTGAAATGGTCATAG 57.860 41.667 16.90 0.00 35.07 2.23
2547 2657 3.052036 CGAACAGCTTTTGACCAATTGG 58.948 45.455 23.31 23.31 42.17 3.16
2548 2658 3.052036 CCGAACAGCTTTTGACCAATTG 58.948 45.455 0.00 0.00 0.00 2.32
2549 2659 2.035832 CCCGAACAGCTTTTGACCAATT 59.964 45.455 0.00 0.00 0.00 2.32
2550 2660 1.613437 CCCGAACAGCTTTTGACCAAT 59.387 47.619 0.00 0.00 0.00 3.16
2551 2661 1.028905 CCCGAACAGCTTTTGACCAA 58.971 50.000 0.00 0.00 0.00 3.67
2552 2662 0.821711 CCCCGAACAGCTTTTGACCA 60.822 55.000 0.00 0.00 0.00 4.02
2553 2663 1.524008 CCCCCGAACAGCTTTTGACC 61.524 60.000 0.00 0.00 0.00 4.02
2554 2664 1.956802 CCCCCGAACAGCTTTTGAC 59.043 57.895 0.00 0.00 0.00 3.18
2555 2665 4.492604 CCCCCGAACAGCTTTTGA 57.507 55.556 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.