Multiple sequence alignment - TraesCS5A01G303800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G303800 chr5A 100.000 3546 0 0 1 3546 512643913 512640368 0.000000e+00 6549.0
1 TraesCS5A01G303800 chr5A 86.768 1247 147 14 1241 2481 545832554 545831320 0.000000e+00 1373.0
2 TraesCS5A01G303800 chr5B 93.450 2122 96 20 398 2492 488192248 488190143 0.000000e+00 3109.0
3 TraesCS5A01G303800 chr5B 91.028 1527 105 17 980 2492 488127150 488125642 0.000000e+00 2032.0
4 TraesCS5A01G303800 chr5B 92.844 1062 63 11 2493 3546 522871473 522870417 0.000000e+00 1528.0
5 TraesCS5A01G303800 chr5B 86.447 1247 151 14 1241 2481 519232648 519231414 0.000000e+00 1351.0
6 TraesCS5A01G303800 chr5B 88.587 1069 98 19 2493 3546 525119799 525120858 0.000000e+00 1277.0
7 TraesCS5A01G303800 chr5D 93.766 1989 82 23 523 2492 406958667 406960632 0.000000e+00 2948.0
8 TraesCS5A01G303800 chr5D 86.378 1248 150 15 1241 2481 429980180 429978946 0.000000e+00 1345.0
9 TraesCS5A01G303800 chr5D 85.976 492 64 5 1950 2437 402726194 402726684 4.060000e-144 521.0
10 TraesCS5A01G303800 chr5D 86.111 72 4 5 473 541 80435809 80435741 4.910000e-09 73.1
11 TraesCS5A01G303800 chr4A 95.292 1062 41 8 2493 3546 375752996 375754056 0.000000e+00 1676.0
12 TraesCS5A01G303800 chr2A 96.634 1010 29 5 2489 3497 970397 969392 0.000000e+00 1672.0
13 TraesCS5A01G303800 chr7A 95.270 1057 41 8 2493 3546 8726734 8725684 0.000000e+00 1666.0
14 TraesCS5A01G303800 chr7A 93.308 1061 59 11 2493 3546 594668866 594669921 0.000000e+00 1555.0
15 TraesCS5A01G303800 chr7A 83.003 1212 166 30 1248 2442 109236820 109238008 0.000000e+00 1061.0
16 TraesCS5A01G303800 chr7A 88.850 287 30 2 2162 2447 91021071 91021356 5.630000e-93 351.0
17 TraesCS5A01G303800 chr7A 76.923 429 37 27 1103 1513 232061623 232062007 1.680000e-43 187.0
18 TraesCS5A01G303800 chrUn 92.925 1060 57 15 2493 3546 137890013 137891060 0.000000e+00 1526.0
19 TraesCS5A01G303800 chr7B 89.915 1061 90 16 2493 3546 748345705 748346755 0.000000e+00 1351.0
20 TraesCS5A01G303800 chr2B 89.840 1063 85 20 2493 3546 545247784 545246736 0.000000e+00 1343.0
21 TraesCS5A01G303800 chr7D 84.108 1183 147 30 1248 2408 104740557 104741720 0.000000e+00 1105.0
22 TraesCS5A01G303800 chr7D 83.303 1108 148 28 1360 2442 104733790 104734885 0.000000e+00 987.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G303800 chr5A 512640368 512643913 3545 True 6549 6549 100.000 1 3546 1 chr5A.!!$R1 3545
1 TraesCS5A01G303800 chr5A 545831320 545832554 1234 True 1373 1373 86.768 1241 2481 1 chr5A.!!$R2 1240
2 TraesCS5A01G303800 chr5B 488190143 488192248 2105 True 3109 3109 93.450 398 2492 1 chr5B.!!$R2 2094
3 TraesCS5A01G303800 chr5B 488125642 488127150 1508 True 2032 2032 91.028 980 2492 1 chr5B.!!$R1 1512
4 TraesCS5A01G303800 chr5B 522870417 522871473 1056 True 1528 1528 92.844 2493 3546 1 chr5B.!!$R4 1053
5 TraesCS5A01G303800 chr5B 519231414 519232648 1234 True 1351 1351 86.447 1241 2481 1 chr5B.!!$R3 1240
6 TraesCS5A01G303800 chr5B 525119799 525120858 1059 False 1277 1277 88.587 2493 3546 1 chr5B.!!$F1 1053
7 TraesCS5A01G303800 chr5D 406958667 406960632 1965 False 2948 2948 93.766 523 2492 1 chr5D.!!$F2 1969
8 TraesCS5A01G303800 chr5D 429978946 429980180 1234 True 1345 1345 86.378 1241 2481 1 chr5D.!!$R2 1240
9 TraesCS5A01G303800 chr4A 375752996 375754056 1060 False 1676 1676 95.292 2493 3546 1 chr4A.!!$F1 1053
10 TraesCS5A01G303800 chr2A 969392 970397 1005 True 1672 1672 96.634 2489 3497 1 chr2A.!!$R1 1008
11 TraesCS5A01G303800 chr7A 8725684 8726734 1050 True 1666 1666 95.270 2493 3546 1 chr7A.!!$R1 1053
12 TraesCS5A01G303800 chr7A 594668866 594669921 1055 False 1555 1555 93.308 2493 3546 1 chr7A.!!$F4 1053
13 TraesCS5A01G303800 chr7A 109236820 109238008 1188 False 1061 1061 83.003 1248 2442 1 chr7A.!!$F2 1194
14 TraesCS5A01G303800 chrUn 137890013 137891060 1047 False 1526 1526 92.925 2493 3546 1 chrUn.!!$F1 1053
15 TraesCS5A01G303800 chr7B 748345705 748346755 1050 False 1351 1351 89.915 2493 3546 1 chr7B.!!$F1 1053
16 TraesCS5A01G303800 chr2B 545246736 545247784 1048 True 1343 1343 89.840 2493 3546 1 chr2B.!!$R1 1053
17 TraesCS5A01G303800 chr7D 104740557 104741720 1163 False 1105 1105 84.108 1248 2408 1 chr7D.!!$F2 1160
18 TraesCS5A01G303800 chr7D 104733790 104734885 1095 False 987 987 83.303 1360 2442 1 chr7D.!!$F1 1082

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
167 168 0.029300 CCAACACGAAGCAACCAGTG 59.971 55.0 0.0 0.0 40.17 3.66 F
263 264 0.033781 TTAAACGTAGGTGGCGTGCT 59.966 50.0 0.0 0.0 42.10 4.40 F
506 518 0.035343 GGGAGAAGTACACCAAGGCC 60.035 60.0 0.0 0.0 0.00 5.19 F
1068 1099 0.749454 AGCATTCGACCAAGCCATCC 60.749 55.0 0.0 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1223 1260 0.601057 ACGACGATGTGATCACACCA 59.399 50.000 30.09 8.92 45.05 4.17 R
1432 1481 1.079197 CCAGCGCATGTACAGGTCA 60.079 57.895 11.47 0.00 0.00 4.02 R
2458 2528 2.286872 CTAGAGCAGGCCAAGAATGTG 58.713 52.381 5.01 0.00 0.00 3.21 R
2712 2798 1.063174 GAATTGTGATCTCGCAGGTGC 59.937 52.381 0.00 0.00 37.69 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.669089 AGAGTTCCTAAACCCAAAATTCAAA 57.331 32.000 0.00 0.00 35.92 2.69
25 26 8.084985 AGAGTTCCTAAACCCAAAATTCAAAA 57.915 30.769 0.00 0.00 35.92 2.44
26 27 8.713971 AGAGTTCCTAAACCCAAAATTCAAAAT 58.286 29.630 0.00 0.00 35.92 1.82
27 28 8.675705 AGTTCCTAAACCCAAAATTCAAAATG 57.324 30.769 0.00 0.00 35.92 2.32
28 29 8.490311 AGTTCCTAAACCCAAAATTCAAAATGA 58.510 29.630 0.00 0.00 35.92 2.57
29 30 8.556194 GTTCCTAAACCCAAAATTCAAAATGAC 58.444 33.333 0.00 0.00 0.00 3.06
30 31 7.796054 TCCTAAACCCAAAATTCAAAATGACA 58.204 30.769 0.00 0.00 0.00 3.58
31 32 8.267894 TCCTAAACCCAAAATTCAAAATGACAA 58.732 29.630 0.00 0.00 0.00 3.18
32 33 8.558700 CCTAAACCCAAAATTCAAAATGACAAG 58.441 33.333 0.00 0.00 0.00 3.16
33 34 7.936496 AAACCCAAAATTCAAAATGACAAGT 57.064 28.000 0.00 0.00 0.00 3.16
34 35 7.936496 AACCCAAAATTCAAAATGACAAGTT 57.064 28.000 0.00 0.00 0.00 2.66
35 36 7.552458 ACCCAAAATTCAAAATGACAAGTTC 57.448 32.000 0.00 0.00 0.00 3.01
36 37 6.542005 ACCCAAAATTCAAAATGACAAGTTCC 59.458 34.615 0.00 0.00 0.00 3.62
37 38 6.767423 CCCAAAATTCAAAATGACAAGTTCCT 59.233 34.615 0.00 0.00 0.00 3.36
38 39 7.041848 CCCAAAATTCAAAATGACAAGTTCCTC 60.042 37.037 0.00 0.00 0.00 3.71
39 40 7.041848 CCAAAATTCAAAATGACAAGTTCCTCC 60.042 37.037 0.00 0.00 0.00 4.30
40 41 6.729690 AATTCAAAATGACAAGTTCCTCCA 57.270 33.333 0.00 0.00 0.00 3.86
41 42 6.923199 ATTCAAAATGACAAGTTCCTCCAT 57.077 33.333 0.00 0.00 0.00 3.41
42 43 5.710513 TCAAAATGACAAGTTCCTCCATG 57.289 39.130 0.00 0.00 0.00 3.66
43 44 4.022068 TCAAAATGACAAGTTCCTCCATGC 60.022 41.667 0.00 0.00 0.00 4.06
44 45 2.134789 ATGACAAGTTCCTCCATGCC 57.865 50.000 0.00 0.00 0.00 4.40
45 46 0.038166 TGACAAGTTCCTCCATGCCC 59.962 55.000 0.00 0.00 0.00 5.36
46 47 0.038166 GACAAGTTCCTCCATGCCCA 59.962 55.000 0.00 0.00 0.00 5.36
47 48 0.482446 ACAAGTTCCTCCATGCCCAA 59.518 50.000 0.00 0.00 0.00 4.12
48 49 1.133199 ACAAGTTCCTCCATGCCCAAA 60.133 47.619 0.00 0.00 0.00 3.28
49 50 1.969923 CAAGTTCCTCCATGCCCAAAA 59.030 47.619 0.00 0.00 0.00 2.44
50 51 2.368221 CAAGTTCCTCCATGCCCAAAAA 59.632 45.455 0.00 0.00 0.00 1.94
51 52 2.250924 AGTTCCTCCATGCCCAAAAAG 58.749 47.619 0.00 0.00 0.00 2.27
52 53 2.158325 AGTTCCTCCATGCCCAAAAAGA 60.158 45.455 0.00 0.00 0.00 2.52
53 54 2.632512 GTTCCTCCATGCCCAAAAAGAA 59.367 45.455 0.00 0.00 0.00 2.52
54 55 2.969628 TCCTCCATGCCCAAAAAGAAA 58.030 42.857 0.00 0.00 0.00 2.52
55 56 2.632512 TCCTCCATGCCCAAAAAGAAAC 59.367 45.455 0.00 0.00 0.00 2.78
56 57 2.289631 CCTCCATGCCCAAAAAGAAACC 60.290 50.000 0.00 0.00 0.00 3.27
57 58 1.696884 TCCATGCCCAAAAAGAAACCC 59.303 47.619 0.00 0.00 0.00 4.11
58 59 1.699083 CCATGCCCAAAAAGAAACCCT 59.301 47.619 0.00 0.00 0.00 4.34
59 60 2.289631 CCATGCCCAAAAAGAAACCCTC 60.290 50.000 0.00 0.00 0.00 4.30
60 61 1.419381 TGCCCAAAAAGAAACCCTCC 58.581 50.000 0.00 0.00 0.00 4.30
61 62 0.685097 GCCCAAAAAGAAACCCTCCC 59.315 55.000 0.00 0.00 0.00 4.30
62 63 1.761371 GCCCAAAAAGAAACCCTCCCT 60.761 52.381 0.00 0.00 0.00 4.20
63 64 2.248248 CCCAAAAAGAAACCCTCCCTC 58.752 52.381 0.00 0.00 0.00 4.30
64 65 1.886542 CCAAAAAGAAACCCTCCCTCG 59.113 52.381 0.00 0.00 0.00 4.63
65 66 1.269723 CAAAAAGAAACCCTCCCTCGC 59.730 52.381 0.00 0.00 0.00 5.03
66 67 0.476771 AAAAGAAACCCTCCCTCGCA 59.523 50.000 0.00 0.00 0.00 5.10
67 68 0.476771 AAAGAAACCCTCCCTCGCAA 59.523 50.000 0.00 0.00 0.00 4.85
68 69 0.476771 AAGAAACCCTCCCTCGCAAA 59.523 50.000 0.00 0.00 0.00 3.68
69 70 0.476771 AGAAACCCTCCCTCGCAAAA 59.523 50.000 0.00 0.00 0.00 2.44
70 71 1.133606 AGAAACCCTCCCTCGCAAAAA 60.134 47.619 0.00 0.00 0.00 1.94
71 72 1.269723 GAAACCCTCCCTCGCAAAAAG 59.730 52.381 0.00 0.00 0.00 2.27
72 73 0.476771 AACCCTCCCTCGCAAAAAGA 59.523 50.000 0.00 0.00 0.00 2.52
73 74 0.476771 ACCCTCCCTCGCAAAAAGAA 59.523 50.000 0.00 0.00 0.00 2.52
74 75 1.133606 ACCCTCCCTCGCAAAAAGAAA 60.134 47.619 0.00 0.00 0.00 2.52
75 76 1.960689 CCCTCCCTCGCAAAAAGAAAA 59.039 47.619 0.00 0.00 0.00 2.29
76 77 2.364002 CCCTCCCTCGCAAAAAGAAAAA 59.636 45.455 0.00 0.00 0.00 1.94
97 98 6.811253 AAAAAGAAAAAGAAACCCAACACC 57.189 33.333 0.00 0.00 0.00 4.16
98 99 5.755409 AAAGAAAAAGAAACCCAACACCT 57.245 34.783 0.00 0.00 0.00 4.00
99 100 6.860790 AAAGAAAAAGAAACCCAACACCTA 57.139 33.333 0.00 0.00 0.00 3.08
100 101 7.432148 AAAGAAAAAGAAACCCAACACCTAT 57.568 32.000 0.00 0.00 0.00 2.57
101 102 6.405278 AGAAAAAGAAACCCAACACCTATG 57.595 37.500 0.00 0.00 0.00 2.23
102 103 6.133356 AGAAAAAGAAACCCAACACCTATGA 58.867 36.000 0.00 0.00 0.00 2.15
103 104 6.782494 AGAAAAAGAAACCCAACACCTATGAT 59.218 34.615 0.00 0.00 0.00 2.45
104 105 7.947890 AGAAAAAGAAACCCAACACCTATGATA 59.052 33.333 0.00 0.00 0.00 2.15
105 106 7.462571 AAAAGAAACCCAACACCTATGATAC 57.537 36.000 0.00 0.00 0.00 2.24
106 107 5.112129 AGAAACCCAACACCTATGATACC 57.888 43.478 0.00 0.00 0.00 2.73
107 108 4.538490 AGAAACCCAACACCTATGATACCA 59.462 41.667 0.00 0.00 0.00 3.25
108 109 4.938575 AACCCAACACCTATGATACCAA 57.061 40.909 0.00 0.00 0.00 3.67
109 110 4.230745 ACCCAACACCTATGATACCAAC 57.769 45.455 0.00 0.00 0.00 3.77
110 111 3.589735 ACCCAACACCTATGATACCAACA 59.410 43.478 0.00 0.00 0.00 3.33
111 112 4.043561 ACCCAACACCTATGATACCAACAA 59.956 41.667 0.00 0.00 0.00 2.83
112 113 4.640201 CCCAACACCTATGATACCAACAAG 59.360 45.833 0.00 0.00 0.00 3.16
113 114 5.253330 CCAACACCTATGATACCAACAAGT 58.747 41.667 0.00 0.00 0.00 3.16
114 115 5.123820 CCAACACCTATGATACCAACAAGTG 59.876 44.000 0.00 0.00 0.00 3.16
122 123 3.763671 CCAACAAGTGGGCCTGAC 58.236 61.111 4.53 0.00 44.64 3.51
123 124 1.903404 CCAACAAGTGGGCCTGACC 60.903 63.158 4.53 0.00 44.64 4.02
132 133 3.291611 GGCCTGACCCATGCAAAG 58.708 61.111 0.00 0.00 0.00 2.77
133 134 2.575461 GCCTGACCCATGCAAAGC 59.425 61.111 0.00 0.00 0.00 3.51
134 135 2.277591 GCCTGACCCATGCAAAGCA 61.278 57.895 0.00 0.00 44.86 3.91
135 136 1.818959 GCCTGACCCATGCAAAGCAA 61.819 55.000 0.00 0.00 43.62 3.91
136 137 0.037975 CCTGACCCATGCAAAGCAAC 60.038 55.000 0.00 0.00 43.62 4.17
137 138 0.675083 CTGACCCATGCAAAGCAACA 59.325 50.000 0.00 0.00 43.62 3.33
138 139 0.675083 TGACCCATGCAAAGCAACAG 59.325 50.000 0.00 0.00 43.62 3.16
139 140 0.037975 GACCCATGCAAAGCAACAGG 60.038 55.000 0.00 0.00 43.62 4.00
140 141 0.760189 ACCCATGCAAAGCAACAGGT 60.760 50.000 0.00 0.60 43.62 4.00
141 142 0.320073 CCCATGCAAAGCAACAGGTG 60.320 55.000 0.00 0.00 43.62 4.00
150 151 2.521465 CAACAGGTGCAAGGCCCA 60.521 61.111 0.00 0.00 0.00 5.36
151 152 2.132996 CAACAGGTGCAAGGCCCAA 61.133 57.895 0.00 0.00 0.00 4.12
152 153 2.133641 AACAGGTGCAAGGCCCAAC 61.134 57.895 0.00 0.00 0.00 3.77
153 154 2.521465 CAGGTGCAAGGCCCAACA 60.521 61.111 0.00 0.00 0.00 3.33
154 155 2.521708 AGGTGCAAGGCCCAACAC 60.522 61.111 0.00 4.92 0.00 3.32
155 156 3.977244 GGTGCAAGGCCCAACACG 61.977 66.667 0.00 0.00 33.81 4.49
156 157 2.904866 GTGCAAGGCCCAACACGA 60.905 61.111 0.00 0.00 0.00 4.35
157 158 2.124109 TGCAAGGCCCAACACGAA 60.124 55.556 0.00 0.00 0.00 3.85
158 159 2.192861 TGCAAGGCCCAACACGAAG 61.193 57.895 0.00 0.00 0.00 3.79
159 160 2.644992 CAAGGCCCAACACGAAGC 59.355 61.111 0.00 0.00 0.00 3.86
160 161 2.192861 CAAGGCCCAACACGAAGCA 61.193 57.895 0.00 0.00 0.00 3.91
161 162 1.454847 AAGGCCCAACACGAAGCAA 60.455 52.632 0.00 0.00 0.00 3.91
162 163 1.734388 AAGGCCCAACACGAAGCAAC 61.734 55.000 0.00 0.00 0.00 4.17
163 164 2.335011 GCCCAACACGAAGCAACC 59.665 61.111 0.00 0.00 0.00 3.77
164 165 2.485795 GCCCAACACGAAGCAACCA 61.486 57.895 0.00 0.00 0.00 3.67
165 166 1.654220 CCCAACACGAAGCAACCAG 59.346 57.895 0.00 0.00 0.00 4.00
166 167 1.101049 CCCAACACGAAGCAACCAGT 61.101 55.000 0.00 0.00 0.00 4.00
167 168 0.029300 CCAACACGAAGCAACCAGTG 59.971 55.000 0.00 0.00 40.17 3.66
168 169 0.029300 CAACACGAAGCAACCAGTGG 59.971 55.000 7.91 7.91 38.78 4.00
169 170 0.107410 AACACGAAGCAACCAGTGGA 60.107 50.000 18.40 0.00 38.78 4.02
170 171 0.814010 ACACGAAGCAACCAGTGGAC 60.814 55.000 18.40 4.74 38.78 4.02
171 172 0.532862 CACGAAGCAACCAGTGGACT 60.533 55.000 18.40 7.25 0.00 3.85
172 173 0.532862 ACGAAGCAACCAGTGGACTG 60.533 55.000 18.40 13.61 43.40 3.51
173 174 0.249868 CGAAGCAACCAGTGGACTGA 60.250 55.000 18.40 0.00 46.59 3.41
174 175 1.517242 GAAGCAACCAGTGGACTGAG 58.483 55.000 18.40 1.44 46.59 3.35
175 176 0.536006 AAGCAACCAGTGGACTGAGC 60.536 55.000 18.40 11.62 46.59 4.26
176 177 1.968540 GCAACCAGTGGACTGAGCC 60.969 63.158 18.40 0.00 46.59 4.70
177 178 1.451504 CAACCAGTGGACTGAGCCA 59.548 57.895 18.40 0.00 46.59 4.75
178 179 0.604780 CAACCAGTGGACTGAGCCAG 60.605 60.000 18.40 1.16 46.59 4.85
179 180 2.046507 CCAGTGGACTGAGCCAGC 60.047 66.667 1.68 0.00 46.59 4.85
180 181 2.046507 CAGTGGACTGAGCCAGCC 60.047 66.667 0.04 5.71 46.59 4.85
181 182 2.527624 AGTGGACTGAGCCAGCCA 60.528 61.111 11.44 11.44 38.95 4.75
182 183 2.046507 GTGGACTGAGCCAGCCAG 60.047 66.667 14.09 6.59 37.95 4.85
183 184 2.203832 TGGACTGAGCCAGCCAGA 60.204 61.111 12.99 0.00 34.55 3.86
184 185 2.288778 TGGACTGAGCCAGCCAGAG 61.289 63.158 12.99 0.00 34.55 3.35
185 186 2.289532 GGACTGAGCCAGCCAGAGT 61.290 63.158 12.99 1.27 34.37 3.24
186 187 1.676384 GACTGAGCCAGCCAGAGTT 59.324 57.895 12.99 0.00 34.37 3.01
187 188 0.390998 GACTGAGCCAGCCAGAGTTC 60.391 60.000 12.99 0.49 34.37 3.01
188 189 1.123861 ACTGAGCCAGCCAGAGTTCA 61.124 55.000 12.99 0.00 34.37 3.18
189 190 0.035881 CTGAGCCAGCCAGAGTTCAA 59.964 55.000 2.97 0.00 33.65 2.69
190 191 0.694771 TGAGCCAGCCAGAGTTCAAT 59.305 50.000 0.00 0.00 0.00 2.57
191 192 1.074405 TGAGCCAGCCAGAGTTCAATT 59.926 47.619 0.00 0.00 0.00 2.32
192 193 1.471684 GAGCCAGCCAGAGTTCAATTG 59.528 52.381 0.00 0.00 0.00 2.32
193 194 0.529378 GCCAGCCAGAGTTCAATTGG 59.471 55.000 5.42 0.00 35.06 3.16
194 195 1.887956 GCCAGCCAGAGTTCAATTGGA 60.888 52.381 5.42 0.00 33.76 3.53
195 196 2.089980 CCAGCCAGAGTTCAATTGGAG 58.910 52.381 5.42 0.00 33.76 3.86
196 197 2.089980 CAGCCAGAGTTCAATTGGAGG 58.910 52.381 5.42 0.00 33.76 4.30
197 198 0.813821 GCCAGAGTTCAATTGGAGGC 59.186 55.000 5.42 2.03 33.76 4.70
198 199 1.467920 CCAGAGTTCAATTGGAGGCC 58.532 55.000 5.42 0.00 33.76 5.19
199 200 1.467920 CAGAGTTCAATTGGAGGCCC 58.532 55.000 5.42 0.00 0.00 5.80
200 201 1.075601 AGAGTTCAATTGGAGGCCCA 58.924 50.000 5.42 0.00 41.64 5.36
208 209 2.200092 TGGAGGCCCAAAACCACC 59.800 61.111 0.00 0.00 40.09 4.61
209 210 2.200092 GGAGGCCCAAAACCACCA 59.800 61.111 0.00 0.00 37.81 4.17
210 211 1.229177 GGAGGCCCAAAACCACCAT 60.229 57.895 0.00 0.00 37.81 3.55
211 212 1.257750 GGAGGCCCAAAACCACCATC 61.258 60.000 0.00 0.00 37.81 3.51
212 213 1.229177 AGGCCCAAAACCACCATCC 60.229 57.895 0.00 0.00 0.00 3.51
213 214 1.535202 GGCCCAAAACCACCATCCA 60.535 57.895 0.00 0.00 0.00 3.41
214 215 0.909133 GGCCCAAAACCACCATCCAT 60.909 55.000 0.00 0.00 0.00 3.41
215 216 0.249955 GCCCAAAACCACCATCCATG 59.750 55.000 0.00 0.00 0.00 3.66
229 230 5.830000 CCATCCATGGCATTGTCATATAG 57.170 43.478 6.96 0.00 41.75 1.31
230 231 5.258841 CCATCCATGGCATTGTCATATAGT 58.741 41.667 6.96 0.00 41.75 2.12
231 232 6.417258 CCATCCATGGCATTGTCATATAGTA 58.583 40.000 6.96 0.00 41.75 1.82
232 233 6.317140 CCATCCATGGCATTGTCATATAGTAC 59.683 42.308 6.96 0.00 41.75 2.73
233 234 6.432403 TCCATGGCATTGTCATATAGTACA 57.568 37.500 6.96 0.00 0.00 2.90
234 235 6.836242 TCCATGGCATTGTCATATAGTACAA 58.164 36.000 6.96 5.43 39.73 2.41
235 236 6.710295 TCCATGGCATTGTCATATAGTACAAC 59.290 38.462 6.96 0.00 38.35 3.32
236 237 6.712095 CCATGGCATTGTCATATAGTACAACT 59.288 38.462 2.91 0.00 38.35 3.16
237 238 7.877612 CCATGGCATTGTCATATAGTACAACTA 59.122 37.037 2.91 0.00 38.35 2.24
238 239 9.440773 CATGGCATTGTCATATAGTACAACTAT 57.559 33.333 2.91 5.04 43.36 2.12
241 242 9.088512 GGCATTGTCATATAGTACAACTATAGC 57.911 37.037 11.33 7.78 44.24 2.97
242 243 9.862371 GCATTGTCATATAGTACAACTATAGCT 57.138 33.333 11.33 0.00 44.24 3.32
254 255 9.578439 AGTACAACTATAGCTTTTAAACGTAGG 57.422 33.333 0.00 0.00 0.00 3.18
255 256 9.358872 GTACAACTATAGCTTTTAAACGTAGGT 57.641 33.333 0.00 0.00 0.00 3.08
256 257 8.248117 ACAACTATAGCTTTTAAACGTAGGTG 57.752 34.615 0.00 5.03 33.00 4.00
257 258 7.332678 ACAACTATAGCTTTTAAACGTAGGTGG 59.667 37.037 0.00 1.15 31.47 4.61
258 259 5.814188 ACTATAGCTTTTAAACGTAGGTGGC 59.186 40.000 0.00 0.00 0.00 5.01
259 260 1.802365 AGCTTTTAAACGTAGGTGGCG 59.198 47.619 0.00 0.00 0.00 5.69
260 261 1.532437 GCTTTTAAACGTAGGTGGCGT 59.468 47.619 0.00 0.00 45.07 5.68
261 262 2.663606 GCTTTTAAACGTAGGTGGCGTG 60.664 50.000 0.00 0.00 42.10 5.34
262 263 0.867086 TTTAAACGTAGGTGGCGTGC 59.133 50.000 0.00 0.00 42.10 5.34
263 264 0.033781 TTAAACGTAGGTGGCGTGCT 59.966 50.000 0.00 0.00 42.10 4.40
264 265 0.887247 TAAACGTAGGTGGCGTGCTA 59.113 50.000 0.00 0.00 42.10 3.49
265 266 0.033781 AAACGTAGGTGGCGTGCTAA 59.966 50.000 0.00 0.00 42.10 3.09
266 267 0.389426 AACGTAGGTGGCGTGCTAAG 60.389 55.000 0.00 0.00 42.10 2.18
267 268 1.214589 CGTAGGTGGCGTGCTAAGT 59.785 57.895 0.00 0.00 0.00 2.24
268 269 1.076533 CGTAGGTGGCGTGCTAAGTG 61.077 60.000 0.00 0.00 0.00 3.16
269 270 1.079405 TAGGTGGCGTGCTAAGTGC 60.079 57.895 0.00 0.00 43.25 4.40
286 287 7.421530 CTAAGTGCACTAAAAGACTTAGCAA 57.578 36.000 22.01 0.00 40.37 3.91
287 288 5.674933 AGTGCACTAAAAGACTTAGCAAC 57.325 39.130 20.16 0.00 31.78 4.17
288 289 5.368989 AGTGCACTAAAAGACTTAGCAACT 58.631 37.500 20.16 0.00 31.78 3.16
289 290 5.823045 AGTGCACTAAAAGACTTAGCAACTT 59.177 36.000 20.16 0.00 31.78 2.66
290 291 6.990349 AGTGCACTAAAAGACTTAGCAACTTA 59.010 34.615 20.16 0.00 31.78 2.24
291 292 7.661847 AGTGCACTAAAAGACTTAGCAACTTAT 59.338 33.333 20.16 0.00 31.78 1.73
292 293 7.958025 GTGCACTAAAAGACTTAGCAACTTATC 59.042 37.037 10.32 0.00 31.78 1.75
293 294 7.878127 TGCACTAAAAGACTTAGCAACTTATCT 59.122 33.333 0.00 0.00 0.00 1.98
294 295 8.384365 GCACTAAAAGACTTAGCAACTTATCTC 58.616 37.037 0.00 0.00 0.00 2.75
295 296 8.874816 CACTAAAAGACTTAGCAACTTATCTCC 58.125 37.037 0.00 0.00 0.00 3.71
296 297 8.041919 ACTAAAAGACTTAGCAACTTATCTCCC 58.958 37.037 0.00 0.00 0.00 4.30
297 298 5.360649 AAGACTTAGCAACTTATCTCCCC 57.639 43.478 0.00 0.00 0.00 4.81
298 299 4.362677 AGACTTAGCAACTTATCTCCCCA 58.637 43.478 0.00 0.00 0.00 4.96
299 300 4.783227 AGACTTAGCAACTTATCTCCCCAA 59.217 41.667 0.00 0.00 0.00 4.12
300 301 5.430089 AGACTTAGCAACTTATCTCCCCAAT 59.570 40.000 0.00 0.00 0.00 3.16
301 302 6.069381 AGACTTAGCAACTTATCTCCCCAATT 60.069 38.462 0.00 0.00 0.00 2.32
302 303 6.122964 ACTTAGCAACTTATCTCCCCAATTC 58.877 40.000 0.00 0.00 0.00 2.17
303 304 4.591321 AGCAACTTATCTCCCCAATTCA 57.409 40.909 0.00 0.00 0.00 2.57
304 305 5.134725 AGCAACTTATCTCCCCAATTCAT 57.865 39.130 0.00 0.00 0.00 2.57
305 306 6.266131 AGCAACTTATCTCCCCAATTCATA 57.734 37.500 0.00 0.00 0.00 2.15
306 307 6.856757 AGCAACTTATCTCCCCAATTCATAT 58.143 36.000 0.00 0.00 0.00 1.78
307 308 6.718454 AGCAACTTATCTCCCCAATTCATATG 59.282 38.462 0.00 0.00 0.00 1.78
308 309 6.491403 GCAACTTATCTCCCCAATTCATATGT 59.509 38.462 1.90 0.00 0.00 2.29
309 310 7.522725 GCAACTTATCTCCCCAATTCATATGTG 60.523 40.741 1.90 0.00 0.00 3.21
310 311 6.006449 ACTTATCTCCCCAATTCATATGTGC 58.994 40.000 1.90 0.00 0.00 4.57
311 312 4.736611 ATCTCCCCAATTCATATGTGCT 57.263 40.909 1.90 0.00 0.00 4.40
312 313 4.524802 TCTCCCCAATTCATATGTGCTT 57.475 40.909 1.90 0.00 0.00 3.91
313 314 5.645056 TCTCCCCAATTCATATGTGCTTA 57.355 39.130 1.90 0.00 0.00 3.09
314 315 5.624159 TCTCCCCAATTCATATGTGCTTAG 58.376 41.667 1.90 0.00 0.00 2.18
315 316 4.144297 TCCCCAATTCATATGTGCTTAGC 58.856 43.478 1.90 0.00 0.00 3.09
316 317 4.141181 TCCCCAATTCATATGTGCTTAGCT 60.141 41.667 5.60 0.00 0.00 3.32
317 318 4.586001 CCCCAATTCATATGTGCTTAGCTT 59.414 41.667 5.60 0.00 0.00 3.74
318 319 5.069516 CCCCAATTCATATGTGCTTAGCTTT 59.930 40.000 5.60 0.00 0.00 3.51
319 320 5.981315 CCCAATTCATATGTGCTTAGCTTTG 59.019 40.000 5.60 0.00 0.00 2.77
320 321 6.183360 CCCAATTCATATGTGCTTAGCTTTGA 60.183 38.462 5.60 0.00 0.00 2.69
321 322 6.916387 CCAATTCATATGTGCTTAGCTTTGAG 59.084 38.462 5.60 0.00 0.00 3.02
322 323 5.490139 TTCATATGTGCTTAGCTTTGAGC 57.510 39.130 5.60 0.00 42.84 4.26
323 324 4.516323 TCATATGTGCTTAGCTTTGAGCA 58.484 39.130 13.18 13.18 45.56 4.26
331 332 5.734720 TGCTTAGCTTTGAGCAACTATACT 58.265 37.500 14.39 0.00 45.19 2.12
332 333 5.812642 TGCTTAGCTTTGAGCAACTATACTC 59.187 40.000 14.39 0.00 45.19 2.59
333 334 5.812642 GCTTAGCTTTGAGCAACTATACTCA 59.187 40.000 10.47 0.00 45.56 3.41
334 335 6.481644 GCTTAGCTTTGAGCAACTATACTCAT 59.518 38.462 10.47 0.00 45.56 2.90
335 336 7.011857 GCTTAGCTTTGAGCAACTATACTCATT 59.988 37.037 10.47 0.00 45.56 2.57
336 337 6.917217 AGCTTTGAGCAACTATACTCATTC 57.083 37.500 2.47 0.00 45.56 2.67
337 338 6.409704 AGCTTTGAGCAACTATACTCATTCA 58.590 36.000 2.47 0.00 45.56 2.57
338 339 7.052873 AGCTTTGAGCAACTATACTCATTCAT 58.947 34.615 2.47 0.00 45.56 2.57
339 340 7.012138 AGCTTTGAGCAACTATACTCATTCATG 59.988 37.037 2.47 0.00 45.56 3.07
340 341 6.609237 TTGAGCAACTATACTCATTCATGC 57.391 37.500 0.00 0.00 42.26 4.06
341 342 5.673514 TGAGCAACTATACTCATTCATGCA 58.326 37.500 0.00 0.00 37.99 3.96
342 343 6.114767 TGAGCAACTATACTCATTCATGCAA 58.885 36.000 0.00 0.00 37.99 4.08
343 344 6.769341 TGAGCAACTATACTCATTCATGCAAT 59.231 34.615 0.00 0.00 37.99 3.56
344 345 7.283807 TGAGCAACTATACTCATTCATGCAATT 59.716 33.333 0.00 0.00 37.99 2.32
345 346 7.423199 AGCAACTATACTCATTCATGCAATTG 58.577 34.615 0.00 0.00 35.11 2.32
346 347 7.067859 AGCAACTATACTCATTCATGCAATTGT 59.932 33.333 7.40 0.00 35.11 2.71
347 348 7.703621 GCAACTATACTCATTCATGCAATTGTT 59.296 33.333 7.40 0.00 33.00 2.83
348 349 9.016623 CAACTATACTCATTCATGCAATTGTTG 57.983 33.333 7.40 5.80 0.00 3.33
349 350 7.709947 ACTATACTCATTCATGCAATTGTTGG 58.290 34.615 7.40 0.00 0.00 3.77
350 351 4.877378 ACTCATTCATGCAATTGTTGGT 57.123 36.364 7.40 0.00 0.00 3.67
351 352 5.981088 ACTCATTCATGCAATTGTTGGTA 57.019 34.783 7.40 0.00 0.00 3.25
352 353 5.957798 ACTCATTCATGCAATTGTTGGTAG 58.042 37.500 7.40 4.71 0.00 3.18
353 354 5.105635 ACTCATTCATGCAATTGTTGGTAGG 60.106 40.000 7.40 0.96 0.00 3.18
354 355 3.591196 TTCATGCAATTGTTGGTAGGC 57.409 42.857 7.40 0.00 0.00 3.93
355 356 2.523245 TCATGCAATTGTTGGTAGGCA 58.477 42.857 7.40 0.00 35.54 4.75
356 357 3.098377 TCATGCAATTGTTGGTAGGCAT 58.902 40.909 7.40 0.00 42.20 4.40
357 358 3.514706 TCATGCAATTGTTGGTAGGCATT 59.485 39.130 7.40 0.00 39.73 3.56
358 359 4.020396 TCATGCAATTGTTGGTAGGCATTT 60.020 37.500 7.40 0.00 39.73 2.32
359 360 4.348863 TGCAATTGTTGGTAGGCATTTT 57.651 36.364 7.40 0.00 0.00 1.82
360 361 4.063689 TGCAATTGTTGGTAGGCATTTTG 58.936 39.130 7.40 0.00 0.00 2.44
361 362 4.064388 GCAATTGTTGGTAGGCATTTTGT 58.936 39.130 7.40 0.00 0.00 2.83
362 363 5.221521 TGCAATTGTTGGTAGGCATTTTGTA 60.222 36.000 7.40 0.00 0.00 2.41
363 364 5.874261 GCAATTGTTGGTAGGCATTTTGTAT 59.126 36.000 7.40 0.00 0.00 2.29
364 365 7.038659 GCAATTGTTGGTAGGCATTTTGTATA 58.961 34.615 7.40 0.00 0.00 1.47
365 366 7.222611 GCAATTGTTGGTAGGCATTTTGTATAG 59.777 37.037 7.40 0.00 0.00 1.31
366 367 8.465999 CAATTGTTGGTAGGCATTTTGTATAGA 58.534 33.333 0.00 0.00 0.00 1.98
367 368 8.766994 ATTGTTGGTAGGCATTTTGTATAGAT 57.233 30.769 0.00 0.00 0.00 1.98
368 369 7.801716 TGTTGGTAGGCATTTTGTATAGATC 57.198 36.000 0.00 0.00 0.00 2.75
369 370 6.481976 TGTTGGTAGGCATTTTGTATAGATCG 59.518 38.462 0.00 0.00 0.00 3.69
370 371 5.547465 TGGTAGGCATTTTGTATAGATCGG 58.453 41.667 0.00 0.00 0.00 4.18
371 372 4.392138 GGTAGGCATTTTGTATAGATCGGC 59.608 45.833 0.00 0.00 0.00 5.54
372 373 3.067106 AGGCATTTTGTATAGATCGGCG 58.933 45.455 0.00 0.00 0.00 6.46
373 374 2.412847 GGCATTTTGTATAGATCGGCGC 60.413 50.000 0.00 0.00 0.00 6.53
374 375 2.223144 GCATTTTGTATAGATCGGCGCA 59.777 45.455 10.83 0.00 0.00 6.09
375 376 3.799035 CATTTTGTATAGATCGGCGCAC 58.201 45.455 10.83 0.00 0.00 5.34
376 377 2.882927 TTTGTATAGATCGGCGCACT 57.117 45.000 10.83 6.46 0.00 4.40
377 378 2.882927 TTGTATAGATCGGCGCACTT 57.117 45.000 10.83 0.00 0.00 3.16
378 379 2.134201 TGTATAGATCGGCGCACTTG 57.866 50.000 10.83 0.00 0.00 3.16
379 380 1.679153 TGTATAGATCGGCGCACTTGA 59.321 47.619 10.83 0.79 0.00 3.02
380 381 2.052157 GTATAGATCGGCGCACTTGAC 58.948 52.381 10.83 2.19 0.00 3.18
381 382 0.459899 ATAGATCGGCGCACTTGACA 59.540 50.000 10.83 0.00 0.00 3.58
382 383 0.459899 TAGATCGGCGCACTTGACAT 59.540 50.000 10.83 0.00 0.00 3.06
383 384 0.391661 AGATCGGCGCACTTGACATT 60.392 50.000 10.83 0.00 0.00 2.71
384 385 0.247814 GATCGGCGCACTTGACATTG 60.248 55.000 10.83 0.00 0.00 2.82
385 386 0.955428 ATCGGCGCACTTGACATTGT 60.955 50.000 10.83 0.00 0.00 2.71
386 387 1.163420 TCGGCGCACTTGACATTGTT 61.163 50.000 10.83 0.00 0.00 2.83
387 388 0.317770 CGGCGCACTTGACATTGTTT 60.318 50.000 10.83 0.00 0.00 2.83
388 389 1.851658 GGCGCACTTGACATTGTTTT 58.148 45.000 10.83 0.00 0.00 2.43
389 390 2.200899 GGCGCACTTGACATTGTTTTT 58.799 42.857 10.83 0.00 0.00 1.94
409 410 0.679505 TCTCGGAGTCACCAAAGTGG 59.320 55.000 4.69 0.00 44.64 4.00
429 430 6.706295 AGTGGTCTCTCTTCTTCTTAATTGG 58.294 40.000 0.00 0.00 0.00 3.16
442 443 5.798125 TCTTAATTGGTTTGCCACATCAA 57.202 34.783 0.00 0.00 46.01 2.57
446 453 5.945466 AATTGGTTTGCCACATCAATTTC 57.055 34.783 0.00 0.00 46.01 2.17
454 461 7.255208 GGTTTGCCACATCAATTTCTTTTTGAT 60.255 33.333 0.00 0.00 38.19 2.57
457 464 8.899427 TGCCACATCAATTTCTTTTTGATAAA 57.101 26.923 0.00 0.00 40.84 1.40
476 483 7.441017 TGATAAAGTGGCATTTTAAGCACTTT 58.559 30.769 17.45 14.82 41.51 2.66
502 514 4.781775 TCAAAAGGGAGAAGTACACCAA 57.218 40.909 0.00 0.00 0.00 3.67
504 516 3.790089 AAAGGGAGAAGTACACCAAGG 57.210 47.619 0.00 0.00 0.00 3.61
505 517 0.984995 AGGGAGAAGTACACCAAGGC 59.015 55.000 0.00 0.00 0.00 4.35
506 518 0.035343 GGGAGAAGTACACCAAGGCC 60.035 60.000 0.00 0.00 0.00 5.19
522 534 1.202782 AGGCCTCTGCATCACATGATC 60.203 52.381 0.00 0.00 40.13 2.92
552 567 4.219033 CCATTTATTAATGCGAACCGAGC 58.781 43.478 0.00 0.00 39.87 5.03
593 610 8.454570 AAAGATCCGGAAAACTACAAGTAAAA 57.545 30.769 9.01 0.00 0.00 1.52
795 821 3.501062 CGTTTGAAGTAGGAAAAGGACCC 59.499 47.826 0.00 0.00 0.00 4.46
810 836 1.672145 GGACCCGACTGTAGCAAGAAC 60.672 57.143 0.00 0.00 0.00 3.01
919 950 3.470567 CGTCGCACGCTCTGGAAC 61.471 66.667 0.00 0.00 33.65 3.62
1008 1039 1.517276 GCCGCGCACGCTATATATAAG 59.483 52.381 13.70 0.00 39.32 1.73
1068 1099 0.749454 AGCATTCGACCAAGCCATCC 60.749 55.000 0.00 0.00 0.00 3.51
1162 1194 2.820197 GCAACCTTAGGTTAGCAAGCTT 59.180 45.455 23.54 0.00 45.01 3.74
1235 1281 2.984871 CACGTGTGGTGTGATCACA 58.015 52.632 24.56 24.56 45.45 3.58
1325 1371 1.842381 GCAGGTGCTCCCCTACAACT 61.842 60.000 0.00 0.00 38.21 3.16
1739 1791 4.421479 ACCCGAACTGCGAGCTCG 62.421 66.667 31.37 31.37 44.57 5.03
2458 2528 1.481871 TCTCCATGTCCGACCTTACC 58.518 55.000 0.00 0.00 0.00 2.85
2472 2542 2.094675 CCTTACCACATTCTTGGCCTG 58.905 52.381 3.32 0.00 40.77 4.85
2624 2705 2.093106 AGCCTCGATCAGAACTAACGT 58.907 47.619 0.00 0.00 0.00 3.99
2633 2714 2.301870 TCAGAACTAACGTGCCCTGATT 59.698 45.455 0.00 0.00 0.00 2.57
2694 2776 1.000274 GCCAGCGCCATATTAAAAGGG 60.000 52.381 2.29 0.00 0.00 3.95
2712 2798 1.182385 GGATACGGGAGAGAGCTGGG 61.182 65.000 0.00 0.00 0.00 4.45
3080 3170 5.531634 TCAGTCTCCAATTTTGATTGCAAC 58.468 37.500 0.00 0.00 32.79 4.17
3165 3260 7.276438 GGGTTTTTAAGATCATGATTGCAAGTC 59.724 37.037 10.14 3.70 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.669089 TTTGAATTTTGGGTTTAGGAACTCT 57.331 32.000 0.00 0.00 41.75 3.24
2 3 8.490311 TCATTTTGAATTTTGGGTTTAGGAACT 58.510 29.630 0.00 0.00 46.37 3.01
3 4 8.556194 GTCATTTTGAATTTTGGGTTTAGGAAC 58.444 33.333 0.00 0.00 34.96 3.62
4 5 8.267894 TGTCATTTTGAATTTTGGGTTTAGGAA 58.732 29.630 0.00 0.00 0.00 3.36
5 6 7.796054 TGTCATTTTGAATTTTGGGTTTAGGA 58.204 30.769 0.00 0.00 0.00 2.94
6 7 8.443953 TTGTCATTTTGAATTTTGGGTTTAGG 57.556 30.769 0.00 0.00 0.00 2.69
7 8 9.108284 ACTTGTCATTTTGAATTTTGGGTTTAG 57.892 29.630 0.00 0.00 0.00 1.85
8 9 9.454859 AACTTGTCATTTTGAATTTTGGGTTTA 57.545 25.926 0.00 0.00 0.00 2.01
9 10 7.936496 ACTTGTCATTTTGAATTTTGGGTTT 57.064 28.000 0.00 0.00 0.00 3.27
10 11 7.066887 GGAACTTGTCATTTTGAATTTTGGGTT 59.933 33.333 0.00 0.00 0.00 4.11
11 12 6.542005 GGAACTTGTCATTTTGAATTTTGGGT 59.458 34.615 0.00 0.00 0.00 4.51
12 13 6.767423 AGGAACTTGTCATTTTGAATTTTGGG 59.233 34.615 0.00 0.00 27.25 4.12
13 14 7.041848 GGAGGAACTTGTCATTTTGAATTTTGG 60.042 37.037 0.00 0.00 41.55 3.28
14 15 7.495279 TGGAGGAACTTGTCATTTTGAATTTTG 59.505 33.333 0.00 0.00 41.55 2.44
15 16 7.563906 TGGAGGAACTTGTCATTTTGAATTTT 58.436 30.769 0.00 0.00 41.55 1.82
16 17 7.123355 TGGAGGAACTTGTCATTTTGAATTT 57.877 32.000 0.00 0.00 41.55 1.82
17 18 6.729690 TGGAGGAACTTGTCATTTTGAATT 57.270 33.333 0.00 0.00 41.55 2.17
18 19 6.694447 CATGGAGGAACTTGTCATTTTGAAT 58.306 36.000 0.00 0.00 41.55 2.57
19 20 5.509501 GCATGGAGGAACTTGTCATTTTGAA 60.510 40.000 0.00 0.00 41.55 2.69
20 21 4.022068 GCATGGAGGAACTTGTCATTTTGA 60.022 41.667 0.00 0.00 41.55 2.69
21 22 4.240096 GCATGGAGGAACTTGTCATTTTG 58.760 43.478 0.00 0.00 41.55 2.44
22 23 3.259123 GGCATGGAGGAACTTGTCATTTT 59.741 43.478 0.00 0.00 41.55 1.82
23 24 2.827921 GGCATGGAGGAACTTGTCATTT 59.172 45.455 0.00 0.00 41.55 2.32
24 25 2.450476 GGCATGGAGGAACTTGTCATT 58.550 47.619 0.00 0.00 41.55 2.57
25 26 1.341383 GGGCATGGAGGAACTTGTCAT 60.341 52.381 0.00 0.00 41.55 3.06
26 27 0.038166 GGGCATGGAGGAACTTGTCA 59.962 55.000 0.00 0.00 41.55 3.58
27 28 0.038166 TGGGCATGGAGGAACTTGTC 59.962 55.000 0.00 0.00 41.55 3.18
28 29 0.482446 TTGGGCATGGAGGAACTTGT 59.518 50.000 0.00 0.00 41.55 3.16
29 30 1.631405 TTTGGGCATGGAGGAACTTG 58.369 50.000 0.00 0.00 41.55 3.16
30 31 2.397044 TTTTGGGCATGGAGGAACTT 57.603 45.000 0.00 0.00 41.55 2.66
32 33 2.247358 TCTTTTTGGGCATGGAGGAAC 58.753 47.619 0.00 0.00 0.00 3.62
33 34 2.692709 TCTTTTTGGGCATGGAGGAA 57.307 45.000 0.00 0.00 0.00 3.36
34 35 2.632512 GTTTCTTTTTGGGCATGGAGGA 59.367 45.455 0.00 0.00 0.00 3.71
35 36 2.289631 GGTTTCTTTTTGGGCATGGAGG 60.290 50.000 0.00 0.00 0.00 4.30
36 37 2.289631 GGGTTTCTTTTTGGGCATGGAG 60.290 50.000 0.00 0.00 0.00 3.86
37 38 1.696884 GGGTTTCTTTTTGGGCATGGA 59.303 47.619 0.00 0.00 0.00 3.41
38 39 1.699083 AGGGTTTCTTTTTGGGCATGG 59.301 47.619 0.00 0.00 0.00 3.66
39 40 2.289631 GGAGGGTTTCTTTTTGGGCATG 60.290 50.000 0.00 0.00 0.00 4.06
40 41 1.977854 GGAGGGTTTCTTTTTGGGCAT 59.022 47.619 0.00 0.00 0.00 4.40
41 42 1.419381 GGAGGGTTTCTTTTTGGGCA 58.581 50.000 0.00 0.00 0.00 5.36
42 43 0.685097 GGGAGGGTTTCTTTTTGGGC 59.315 55.000 0.00 0.00 0.00 5.36
43 44 2.248248 GAGGGAGGGTTTCTTTTTGGG 58.752 52.381 0.00 0.00 0.00 4.12
44 45 1.886542 CGAGGGAGGGTTTCTTTTTGG 59.113 52.381 0.00 0.00 0.00 3.28
45 46 1.269723 GCGAGGGAGGGTTTCTTTTTG 59.730 52.381 0.00 0.00 0.00 2.44
46 47 1.133606 TGCGAGGGAGGGTTTCTTTTT 60.134 47.619 0.00 0.00 0.00 1.94
47 48 0.476771 TGCGAGGGAGGGTTTCTTTT 59.523 50.000 0.00 0.00 0.00 2.27
48 49 0.476771 TTGCGAGGGAGGGTTTCTTT 59.523 50.000 0.00 0.00 0.00 2.52
49 50 0.476771 TTTGCGAGGGAGGGTTTCTT 59.523 50.000 0.00 0.00 0.00 2.52
50 51 0.476771 TTTTGCGAGGGAGGGTTTCT 59.523 50.000 0.00 0.00 0.00 2.52
51 52 1.269723 CTTTTTGCGAGGGAGGGTTTC 59.730 52.381 0.00 0.00 0.00 2.78
52 53 1.133606 TCTTTTTGCGAGGGAGGGTTT 60.134 47.619 0.00 0.00 0.00 3.27
53 54 0.476771 TCTTTTTGCGAGGGAGGGTT 59.523 50.000 0.00 0.00 0.00 4.11
54 55 0.476771 TTCTTTTTGCGAGGGAGGGT 59.523 50.000 0.00 0.00 0.00 4.34
55 56 1.616159 TTTCTTTTTGCGAGGGAGGG 58.384 50.000 0.00 0.00 0.00 4.30
56 57 3.726291 TTTTTCTTTTTGCGAGGGAGG 57.274 42.857 0.00 0.00 0.00 4.30
74 75 6.539173 AGGTGTTGGGTTTCTTTTTCTTTTT 58.461 32.000 0.00 0.00 0.00 1.94
75 76 6.121776 AGGTGTTGGGTTTCTTTTTCTTTT 57.878 33.333 0.00 0.00 0.00 2.27
76 77 5.755409 AGGTGTTGGGTTTCTTTTTCTTT 57.245 34.783 0.00 0.00 0.00 2.52
77 78 6.609616 TCATAGGTGTTGGGTTTCTTTTTCTT 59.390 34.615 0.00 0.00 0.00 2.52
78 79 6.133356 TCATAGGTGTTGGGTTTCTTTTTCT 58.867 36.000 0.00 0.00 0.00 2.52
79 80 6.399639 TCATAGGTGTTGGGTTTCTTTTTC 57.600 37.500 0.00 0.00 0.00 2.29
80 81 6.994421 ATCATAGGTGTTGGGTTTCTTTTT 57.006 33.333 0.00 0.00 0.00 1.94
81 82 6.436218 GGTATCATAGGTGTTGGGTTTCTTTT 59.564 38.462 0.00 0.00 0.00 2.27
82 83 5.949952 GGTATCATAGGTGTTGGGTTTCTTT 59.050 40.000 0.00 0.00 0.00 2.52
83 84 5.014755 TGGTATCATAGGTGTTGGGTTTCTT 59.985 40.000 0.00 0.00 0.00 2.52
84 85 4.538490 TGGTATCATAGGTGTTGGGTTTCT 59.462 41.667 0.00 0.00 0.00 2.52
85 86 4.850680 TGGTATCATAGGTGTTGGGTTTC 58.149 43.478 0.00 0.00 0.00 2.78
86 87 4.938575 TGGTATCATAGGTGTTGGGTTT 57.061 40.909 0.00 0.00 0.00 3.27
87 88 4.043561 TGTTGGTATCATAGGTGTTGGGTT 59.956 41.667 0.00 0.00 0.00 4.11
88 89 3.589735 TGTTGGTATCATAGGTGTTGGGT 59.410 43.478 0.00 0.00 0.00 4.51
89 90 4.229304 TGTTGGTATCATAGGTGTTGGG 57.771 45.455 0.00 0.00 0.00 4.12
90 91 5.123820 CACTTGTTGGTATCATAGGTGTTGG 59.876 44.000 0.00 0.00 0.00 3.77
91 92 5.123820 CCACTTGTTGGTATCATAGGTGTTG 59.876 44.000 3.46 0.00 41.10 3.33
92 93 5.253330 CCACTTGTTGGTATCATAGGTGTT 58.747 41.667 3.46 0.00 41.10 3.32
93 94 4.324254 CCCACTTGTTGGTATCATAGGTGT 60.324 45.833 3.46 0.00 45.25 4.16
94 95 4.199310 CCCACTTGTTGGTATCATAGGTG 58.801 47.826 0.00 0.00 45.25 4.00
95 96 3.371595 GCCCACTTGTTGGTATCATAGGT 60.372 47.826 0.00 0.00 45.25 3.08
96 97 3.214328 GCCCACTTGTTGGTATCATAGG 58.786 50.000 0.00 0.00 45.25 2.57
97 98 3.117888 AGGCCCACTTGTTGGTATCATAG 60.118 47.826 0.00 0.00 45.25 2.23
98 99 2.849943 AGGCCCACTTGTTGGTATCATA 59.150 45.455 0.00 0.00 45.25 2.15
99 100 1.640670 AGGCCCACTTGTTGGTATCAT 59.359 47.619 0.00 0.00 45.25 2.45
100 101 1.072266 AGGCCCACTTGTTGGTATCA 58.928 50.000 0.00 0.00 45.25 2.15
101 102 1.004277 TCAGGCCCACTTGTTGGTATC 59.996 52.381 0.00 0.00 45.25 2.24
102 103 1.072266 TCAGGCCCACTTGTTGGTAT 58.928 50.000 0.00 0.00 45.25 2.73
103 104 0.109723 GTCAGGCCCACTTGTTGGTA 59.890 55.000 0.00 0.00 45.25 3.25
104 105 1.152756 GTCAGGCCCACTTGTTGGT 60.153 57.895 0.00 0.00 45.25 3.67
105 106 1.903404 GGTCAGGCCCACTTGTTGG 60.903 63.158 0.00 0.00 46.47 3.77
106 107 3.763671 GGTCAGGCCCACTTGTTG 58.236 61.111 0.00 0.00 0.00 3.33
115 116 3.010413 GCTTTGCATGGGTCAGGCC 62.010 63.158 0.00 0.00 40.65 5.19
116 117 1.818959 TTGCTTTGCATGGGTCAGGC 61.819 55.000 0.00 0.00 41.79 4.85
117 118 0.037975 GTTGCTTTGCATGGGTCAGG 60.038 55.000 0.00 0.00 38.76 3.86
118 119 0.675083 TGTTGCTTTGCATGGGTCAG 59.325 50.000 0.00 0.00 38.76 3.51
119 120 0.675083 CTGTTGCTTTGCATGGGTCA 59.325 50.000 0.00 0.00 38.76 4.02
120 121 0.037975 CCTGTTGCTTTGCATGGGTC 60.038 55.000 0.00 0.00 38.76 4.46
121 122 0.760189 ACCTGTTGCTTTGCATGGGT 60.760 50.000 0.00 0.17 38.76 4.51
122 123 0.320073 CACCTGTTGCTTTGCATGGG 60.320 55.000 0.00 0.00 38.76 4.00
123 124 3.204505 CACCTGTTGCTTTGCATGG 57.795 52.632 0.00 0.00 38.76 3.66
133 134 2.132996 TTGGGCCTTGCACCTGTTG 61.133 57.895 4.53 0.00 0.00 3.33
134 135 2.133641 GTTGGGCCTTGCACCTGTT 61.134 57.895 4.53 0.00 0.00 3.16
135 136 2.521708 GTTGGGCCTTGCACCTGT 60.522 61.111 4.53 0.00 0.00 4.00
136 137 2.521465 TGTTGGGCCTTGCACCTG 60.521 61.111 4.53 0.00 0.00 4.00
137 138 2.521708 GTGTTGGGCCTTGCACCT 60.522 61.111 4.53 0.00 0.00 4.00
138 139 3.977244 CGTGTTGGGCCTTGCACC 61.977 66.667 4.53 0.00 0.00 5.01
139 140 2.406452 CTTCGTGTTGGGCCTTGCAC 62.406 60.000 4.53 10.15 0.00 4.57
140 141 2.124109 TTCGTGTTGGGCCTTGCA 60.124 55.556 4.53 0.00 0.00 4.08
141 142 2.644992 CTTCGTGTTGGGCCTTGC 59.355 61.111 4.53 0.00 0.00 4.01
142 143 1.733402 TTGCTTCGTGTTGGGCCTTG 61.733 55.000 4.53 0.00 0.00 3.61
143 144 1.454847 TTGCTTCGTGTTGGGCCTT 60.455 52.632 4.53 0.00 0.00 4.35
144 145 2.193536 GTTGCTTCGTGTTGGGCCT 61.194 57.895 4.53 0.00 0.00 5.19
145 146 2.335011 GTTGCTTCGTGTTGGGCC 59.665 61.111 0.00 0.00 0.00 5.80
146 147 2.335011 GGTTGCTTCGTGTTGGGC 59.665 61.111 0.00 0.00 0.00 5.36
147 148 1.101049 ACTGGTTGCTTCGTGTTGGG 61.101 55.000 0.00 0.00 0.00 4.12
148 149 0.029300 CACTGGTTGCTTCGTGTTGG 59.971 55.000 0.00 0.00 0.00 3.77
149 150 0.029300 CCACTGGTTGCTTCGTGTTG 59.971 55.000 0.00 0.00 0.00 3.33
150 151 0.107410 TCCACTGGTTGCTTCGTGTT 60.107 50.000 0.00 0.00 0.00 3.32
151 152 0.814010 GTCCACTGGTTGCTTCGTGT 60.814 55.000 0.00 0.00 0.00 4.49
152 153 0.532862 AGTCCACTGGTTGCTTCGTG 60.533 55.000 0.00 0.00 0.00 4.35
153 154 0.532862 CAGTCCACTGGTTGCTTCGT 60.533 55.000 0.00 0.00 40.20 3.85
154 155 0.249868 TCAGTCCACTGGTTGCTTCG 60.250 55.000 6.87 0.00 43.91 3.79
155 156 1.517242 CTCAGTCCACTGGTTGCTTC 58.483 55.000 6.87 0.00 43.91 3.86
156 157 0.536006 GCTCAGTCCACTGGTTGCTT 60.536 55.000 6.87 0.00 43.91 3.91
157 158 1.072159 GCTCAGTCCACTGGTTGCT 59.928 57.895 6.87 0.00 43.91 3.91
158 159 1.968540 GGCTCAGTCCACTGGTTGC 60.969 63.158 6.87 8.74 43.91 4.17
159 160 0.604780 CTGGCTCAGTCCACTGGTTG 60.605 60.000 6.87 0.00 43.91 3.77
160 161 1.757306 CTGGCTCAGTCCACTGGTT 59.243 57.895 6.87 0.00 43.91 3.67
161 162 2.888447 GCTGGCTCAGTCCACTGGT 61.888 63.158 6.87 0.00 43.91 4.00
162 163 2.046507 GCTGGCTCAGTCCACTGG 60.047 66.667 6.87 0.00 43.91 4.00
163 164 2.046507 GGCTGGCTCAGTCCACTG 60.047 66.667 0.00 0.00 45.08 3.66
164 165 2.527624 TGGCTGGCTCAGTCCACT 60.528 61.111 2.00 0.00 34.88 4.00
165 166 2.046507 CTGGCTGGCTCAGTCCAC 60.047 66.667 2.00 0.79 34.88 4.02
166 167 2.203832 TCTGGCTGGCTCAGTCCA 60.204 61.111 2.00 13.44 34.88 4.02
167 168 1.835927 AACTCTGGCTGGCTCAGTCC 61.836 60.000 2.00 6.55 34.88 3.85
168 169 0.390998 GAACTCTGGCTGGCTCAGTC 60.391 60.000 2.00 0.39 36.52 3.51
169 170 1.123861 TGAACTCTGGCTGGCTCAGT 61.124 55.000 2.00 1.29 33.43 3.41
170 171 0.035881 TTGAACTCTGGCTGGCTCAG 59.964 55.000 2.00 0.63 34.12 3.35
171 172 0.694771 ATTGAACTCTGGCTGGCTCA 59.305 50.000 2.00 0.00 0.00 4.26
172 173 1.471684 CAATTGAACTCTGGCTGGCTC 59.528 52.381 0.00 0.00 0.00 4.70
173 174 1.542492 CAATTGAACTCTGGCTGGCT 58.458 50.000 0.00 0.00 0.00 4.75
174 175 0.529378 CCAATTGAACTCTGGCTGGC 59.471 55.000 7.12 0.00 0.00 4.85
175 176 2.089980 CTCCAATTGAACTCTGGCTGG 58.910 52.381 7.12 0.00 0.00 4.85
176 177 2.089980 CCTCCAATTGAACTCTGGCTG 58.910 52.381 7.12 0.00 0.00 4.85
177 178 1.615384 GCCTCCAATTGAACTCTGGCT 60.615 52.381 7.12 0.00 36.52 4.75
178 179 0.813821 GCCTCCAATTGAACTCTGGC 59.186 55.000 7.12 7.21 0.00 4.85
179 180 1.467920 GGCCTCCAATTGAACTCTGG 58.532 55.000 7.12 1.00 0.00 3.86
180 181 1.272092 TGGGCCTCCAATTGAACTCTG 60.272 52.381 7.12 0.00 40.73 3.35
181 182 1.075601 TGGGCCTCCAATTGAACTCT 58.924 50.000 7.12 0.00 40.73 3.24
182 183 3.670105 TGGGCCTCCAATTGAACTC 57.330 52.632 7.12 0.00 40.73 3.01
191 192 2.200092 GGTGGTTTTGGGCCTCCA 59.800 61.111 4.53 5.66 42.25 3.86
192 193 1.229177 ATGGTGGTTTTGGGCCTCC 60.229 57.895 4.53 2.84 39.43 4.30
193 194 1.257750 GGATGGTGGTTTTGGGCCTC 61.258 60.000 4.53 0.00 0.00 4.70
194 195 1.229177 GGATGGTGGTTTTGGGCCT 60.229 57.895 4.53 0.00 0.00 5.19
195 196 0.909133 ATGGATGGTGGTTTTGGGCC 60.909 55.000 0.00 0.00 0.00 5.80
196 197 0.249955 CATGGATGGTGGTTTTGGGC 59.750 55.000 0.00 0.00 0.00 5.36
197 198 0.903942 CCATGGATGGTGGTTTTGGG 59.096 55.000 5.56 0.00 43.05 4.12
208 209 6.880529 TGTACTATATGACAATGCCATGGATG 59.119 38.462 18.40 13.32 0.00 3.51
209 210 7.019656 TGTACTATATGACAATGCCATGGAT 57.980 36.000 18.40 3.14 0.00 3.41
210 211 6.432403 TGTACTATATGACAATGCCATGGA 57.568 37.500 18.40 0.31 0.00 3.41
211 212 6.712095 AGTTGTACTATATGACAATGCCATGG 59.288 38.462 7.63 7.63 37.84 3.66
212 213 7.734924 AGTTGTACTATATGACAATGCCATG 57.265 36.000 0.00 0.00 37.84 3.66
215 216 9.088512 GCTATAGTTGTACTATATGACAATGCC 57.911 37.037 0.84 0.00 41.36 4.40
216 217 9.862371 AGCTATAGTTGTACTATATGACAATGC 57.138 33.333 0.84 5.80 41.36 3.56
228 229 9.578439 CCTACGTTTAAAAGCTATAGTTGTACT 57.422 33.333 0.00 0.00 0.00 2.73
229 230 9.358872 ACCTACGTTTAAAAGCTATAGTTGTAC 57.641 33.333 0.00 0.00 0.00 2.90
230 231 9.357652 CACCTACGTTTAAAAGCTATAGTTGTA 57.642 33.333 0.00 0.00 0.00 2.41
231 232 7.332678 CCACCTACGTTTAAAAGCTATAGTTGT 59.667 37.037 0.00 0.00 0.00 3.32
232 233 7.675637 GCCACCTACGTTTAAAAGCTATAGTTG 60.676 40.741 0.00 0.00 0.00 3.16
233 234 6.314648 GCCACCTACGTTTAAAAGCTATAGTT 59.685 38.462 0.00 0.00 0.00 2.24
234 235 5.814188 GCCACCTACGTTTAAAAGCTATAGT 59.186 40.000 0.00 0.00 0.00 2.12
235 236 5.051240 CGCCACCTACGTTTAAAAGCTATAG 60.051 44.000 0.00 0.00 0.00 1.31
236 237 4.805192 CGCCACCTACGTTTAAAAGCTATA 59.195 41.667 0.00 0.00 0.00 1.31
237 238 3.619929 CGCCACCTACGTTTAAAAGCTAT 59.380 43.478 0.00 0.00 0.00 2.97
238 239 2.995258 CGCCACCTACGTTTAAAAGCTA 59.005 45.455 0.00 0.00 0.00 3.32
239 240 1.802365 CGCCACCTACGTTTAAAAGCT 59.198 47.619 0.00 0.00 0.00 3.74
240 241 1.532437 ACGCCACCTACGTTTAAAAGC 59.468 47.619 0.00 0.00 41.93 3.51
241 242 2.663606 GCACGCCACCTACGTTTAAAAG 60.664 50.000 0.00 0.00 42.96 2.27
242 243 1.263752 GCACGCCACCTACGTTTAAAA 59.736 47.619 0.00 0.00 42.96 1.52
243 244 0.867086 GCACGCCACCTACGTTTAAA 59.133 50.000 0.00 0.00 42.96 1.52
244 245 0.033781 AGCACGCCACCTACGTTTAA 59.966 50.000 0.00 0.00 42.96 1.52
245 246 0.887247 TAGCACGCCACCTACGTTTA 59.113 50.000 0.00 0.00 42.96 2.01
246 247 0.033781 TTAGCACGCCACCTACGTTT 59.966 50.000 0.00 0.00 42.96 3.60
247 248 0.389426 CTTAGCACGCCACCTACGTT 60.389 55.000 0.00 0.00 42.96 3.99
248 249 1.214589 CTTAGCACGCCACCTACGT 59.785 57.895 0.00 0.00 46.42 3.57
249 250 1.076533 CACTTAGCACGCCACCTACG 61.077 60.000 0.00 0.00 0.00 3.51
250 251 1.359459 GCACTTAGCACGCCACCTAC 61.359 60.000 0.00 0.00 44.79 3.18
251 252 1.079405 GCACTTAGCACGCCACCTA 60.079 57.895 0.00 0.00 44.79 3.08
252 253 2.358737 GCACTTAGCACGCCACCT 60.359 61.111 0.00 0.00 44.79 4.00
262 263 7.171678 AGTTGCTAAGTCTTTTAGTGCACTTAG 59.828 37.037 27.06 17.85 45.99 2.18
263 264 6.990349 AGTTGCTAAGTCTTTTAGTGCACTTA 59.010 34.615 27.06 14.13 31.52 2.24
264 265 5.823045 AGTTGCTAAGTCTTTTAGTGCACTT 59.177 36.000 27.06 9.41 33.63 3.16
265 266 5.368989 AGTTGCTAAGTCTTTTAGTGCACT 58.631 37.500 25.12 25.12 0.00 4.40
266 267 5.674933 AGTTGCTAAGTCTTTTAGTGCAC 57.325 39.130 9.40 9.40 0.00 4.57
267 268 7.878127 AGATAAGTTGCTAAGTCTTTTAGTGCA 59.122 33.333 0.00 0.00 0.00 4.57
268 269 8.257830 AGATAAGTTGCTAAGTCTTTTAGTGC 57.742 34.615 0.00 0.00 0.00 4.40
269 270 8.874816 GGAGATAAGTTGCTAAGTCTTTTAGTG 58.125 37.037 0.00 0.00 0.00 2.74
270 271 8.041919 GGGAGATAAGTTGCTAAGTCTTTTAGT 58.958 37.037 0.00 0.00 0.00 2.24
271 272 7.496263 GGGGAGATAAGTTGCTAAGTCTTTTAG 59.504 40.741 0.00 0.00 0.00 1.85
272 273 7.037873 TGGGGAGATAAGTTGCTAAGTCTTTTA 60.038 37.037 0.00 0.00 0.00 1.52
273 274 6.181190 GGGGAGATAAGTTGCTAAGTCTTTT 58.819 40.000 0.00 0.00 0.00 2.27
274 275 5.250774 TGGGGAGATAAGTTGCTAAGTCTTT 59.749 40.000 0.00 0.00 0.00 2.52
275 276 4.783227 TGGGGAGATAAGTTGCTAAGTCTT 59.217 41.667 0.00 0.00 0.00 3.01
276 277 4.362677 TGGGGAGATAAGTTGCTAAGTCT 58.637 43.478 0.00 0.00 0.00 3.24
277 278 4.755266 TGGGGAGATAAGTTGCTAAGTC 57.245 45.455 0.00 0.00 0.00 3.01
278 279 5.717119 ATTGGGGAGATAAGTTGCTAAGT 57.283 39.130 0.00 0.00 0.00 2.24
279 280 6.122277 TGAATTGGGGAGATAAGTTGCTAAG 58.878 40.000 0.00 0.00 0.00 2.18
280 281 6.073447 TGAATTGGGGAGATAAGTTGCTAA 57.927 37.500 0.00 0.00 0.00 3.09
281 282 5.708736 TGAATTGGGGAGATAAGTTGCTA 57.291 39.130 0.00 0.00 0.00 3.49
282 283 4.591321 TGAATTGGGGAGATAAGTTGCT 57.409 40.909 0.00 0.00 0.00 3.91
283 284 6.491403 ACATATGAATTGGGGAGATAAGTTGC 59.509 38.462 10.38 0.00 0.00 4.17
284 285 7.522725 GCACATATGAATTGGGGAGATAAGTTG 60.523 40.741 10.38 0.00 0.00 3.16
285 286 6.491403 GCACATATGAATTGGGGAGATAAGTT 59.509 38.462 10.38 0.00 0.00 2.66
286 287 6.006449 GCACATATGAATTGGGGAGATAAGT 58.994 40.000 10.38 0.00 0.00 2.24
287 288 6.243900 AGCACATATGAATTGGGGAGATAAG 58.756 40.000 10.38 0.00 0.00 1.73
288 289 6.204852 AGCACATATGAATTGGGGAGATAA 57.795 37.500 10.38 0.00 0.00 1.75
289 290 5.848286 AGCACATATGAATTGGGGAGATA 57.152 39.130 10.38 0.00 0.00 1.98
290 291 4.736611 AGCACATATGAATTGGGGAGAT 57.263 40.909 10.38 0.00 0.00 2.75
291 292 4.524802 AAGCACATATGAATTGGGGAGA 57.475 40.909 10.38 0.00 0.00 3.71
292 293 4.217118 GCTAAGCACATATGAATTGGGGAG 59.783 45.833 10.38 0.00 0.00 4.30
293 294 4.141181 AGCTAAGCACATATGAATTGGGGA 60.141 41.667 10.38 0.00 0.00 4.81
294 295 4.147321 AGCTAAGCACATATGAATTGGGG 58.853 43.478 10.38 0.00 0.00 4.96
295 296 5.779529 AAGCTAAGCACATATGAATTGGG 57.220 39.130 10.38 0.00 0.00 4.12
296 297 6.798482 TCAAAGCTAAGCACATATGAATTGG 58.202 36.000 10.38 4.29 0.00 3.16
297 298 6.417044 GCTCAAAGCTAAGCACATATGAATTG 59.583 38.462 10.38 0.00 38.45 2.32
298 299 6.095860 TGCTCAAAGCTAAGCACATATGAATT 59.904 34.615 10.38 3.60 43.30 2.17
299 300 5.591472 TGCTCAAAGCTAAGCACATATGAAT 59.409 36.000 10.38 0.00 43.30 2.57
300 301 4.943093 TGCTCAAAGCTAAGCACATATGAA 59.057 37.500 10.38 0.00 43.30 2.57
301 302 4.516323 TGCTCAAAGCTAAGCACATATGA 58.484 39.130 10.38 0.00 43.30 2.15
302 303 4.888038 TGCTCAAAGCTAAGCACATATG 57.112 40.909 12.81 0.00 43.30 1.78
308 309 5.734720 AGTATAGTTGCTCAAAGCTAAGCA 58.265 37.500 12.81 12.81 46.31 3.91
309 310 5.812642 TGAGTATAGTTGCTCAAAGCTAAGC 59.187 40.000 8.35 8.35 40.99 3.09
310 311 8.430801 AATGAGTATAGTTGCTCAAAGCTAAG 57.569 34.615 0.11 0.00 45.89 2.18
311 312 8.040727 TGAATGAGTATAGTTGCTCAAAGCTAA 58.959 33.333 0.11 0.00 45.89 3.09
312 313 7.555965 TGAATGAGTATAGTTGCTCAAAGCTA 58.444 34.615 0.11 0.00 45.89 3.32
313 314 6.409704 TGAATGAGTATAGTTGCTCAAAGCT 58.590 36.000 0.11 0.00 45.89 3.74
314 315 6.668541 TGAATGAGTATAGTTGCTCAAAGC 57.331 37.500 0.00 0.00 45.89 3.51
315 316 7.130917 GCATGAATGAGTATAGTTGCTCAAAG 58.869 38.462 0.00 0.00 45.89 2.77
316 317 6.598850 TGCATGAATGAGTATAGTTGCTCAAA 59.401 34.615 0.00 0.00 45.89 2.69
317 318 6.114767 TGCATGAATGAGTATAGTTGCTCAA 58.885 36.000 0.00 0.00 45.89 3.02
318 319 5.673514 TGCATGAATGAGTATAGTTGCTCA 58.326 37.500 0.00 0.00 46.64 4.26
319 320 6.609237 TTGCATGAATGAGTATAGTTGCTC 57.391 37.500 0.00 0.00 35.36 4.26
320 321 7.067859 ACAATTGCATGAATGAGTATAGTTGCT 59.932 33.333 5.05 0.00 0.00 3.91
321 322 7.198390 ACAATTGCATGAATGAGTATAGTTGC 58.802 34.615 5.05 0.00 0.00 4.17
322 323 9.016623 CAACAATTGCATGAATGAGTATAGTTG 57.983 33.333 5.05 0.00 0.00 3.16
323 324 8.192774 CCAACAATTGCATGAATGAGTATAGTT 58.807 33.333 5.05 0.00 0.00 2.24
324 325 7.340232 ACCAACAATTGCATGAATGAGTATAGT 59.660 33.333 5.05 0.00 0.00 2.12
325 326 7.709947 ACCAACAATTGCATGAATGAGTATAG 58.290 34.615 5.05 0.00 0.00 1.31
326 327 7.643569 ACCAACAATTGCATGAATGAGTATA 57.356 32.000 5.05 0.00 0.00 1.47
327 328 6.534475 ACCAACAATTGCATGAATGAGTAT 57.466 33.333 5.05 0.00 0.00 2.12
328 329 5.981088 ACCAACAATTGCATGAATGAGTA 57.019 34.783 5.05 0.00 0.00 2.59
329 330 4.877378 ACCAACAATTGCATGAATGAGT 57.123 36.364 5.05 0.00 0.00 3.41
330 331 5.345702 CCTACCAACAATTGCATGAATGAG 58.654 41.667 5.05 1.53 0.00 2.90
331 332 4.381825 GCCTACCAACAATTGCATGAATGA 60.382 41.667 5.05 0.00 0.00 2.57
332 333 3.866910 GCCTACCAACAATTGCATGAATG 59.133 43.478 5.05 0.00 0.00 2.67
333 334 3.514706 TGCCTACCAACAATTGCATGAAT 59.485 39.130 5.05 0.36 0.00 2.57
334 335 2.896044 TGCCTACCAACAATTGCATGAA 59.104 40.909 5.05 0.00 0.00 2.57
335 336 2.523245 TGCCTACCAACAATTGCATGA 58.477 42.857 5.05 0.00 0.00 3.07
336 337 3.530265 ATGCCTACCAACAATTGCATG 57.470 42.857 5.05 5.10 37.98 4.06
337 338 4.556592 AAATGCCTACCAACAATTGCAT 57.443 36.364 5.05 0.00 40.87 3.96
338 339 4.063689 CAAAATGCCTACCAACAATTGCA 58.936 39.130 5.05 0.00 0.00 4.08
339 340 4.064388 ACAAAATGCCTACCAACAATTGC 58.936 39.130 5.05 0.00 0.00 3.56
340 341 8.465999 TCTATACAAAATGCCTACCAACAATTG 58.534 33.333 3.24 3.24 0.00 2.32
341 342 8.588290 TCTATACAAAATGCCTACCAACAATT 57.412 30.769 0.00 0.00 0.00 2.32
342 343 8.766994 ATCTATACAAAATGCCTACCAACAAT 57.233 30.769 0.00 0.00 0.00 2.71
343 344 7.011950 CGATCTATACAAAATGCCTACCAACAA 59.988 37.037 0.00 0.00 0.00 2.83
344 345 6.481976 CGATCTATACAAAATGCCTACCAACA 59.518 38.462 0.00 0.00 0.00 3.33
345 346 6.073222 CCGATCTATACAAAATGCCTACCAAC 60.073 42.308 0.00 0.00 0.00 3.77
346 347 5.995282 CCGATCTATACAAAATGCCTACCAA 59.005 40.000 0.00 0.00 0.00 3.67
347 348 5.547465 CCGATCTATACAAAATGCCTACCA 58.453 41.667 0.00 0.00 0.00 3.25
348 349 4.392138 GCCGATCTATACAAAATGCCTACC 59.608 45.833 0.00 0.00 0.00 3.18
349 350 4.091509 CGCCGATCTATACAAAATGCCTAC 59.908 45.833 0.00 0.00 0.00 3.18
350 351 4.242475 CGCCGATCTATACAAAATGCCTA 58.758 43.478 0.00 0.00 0.00 3.93
351 352 3.067106 CGCCGATCTATACAAAATGCCT 58.933 45.455 0.00 0.00 0.00 4.75
352 353 2.412847 GCGCCGATCTATACAAAATGCC 60.413 50.000 0.00 0.00 0.00 4.40
353 354 2.223144 TGCGCCGATCTATACAAAATGC 59.777 45.455 4.18 0.00 0.00 3.56
354 355 3.494626 AGTGCGCCGATCTATACAAAATG 59.505 43.478 4.18 0.00 0.00 2.32
355 356 3.728845 AGTGCGCCGATCTATACAAAAT 58.271 40.909 4.18 0.00 0.00 1.82
356 357 3.173668 AGTGCGCCGATCTATACAAAA 57.826 42.857 4.18 0.00 0.00 2.44
357 358 2.863740 CAAGTGCGCCGATCTATACAAA 59.136 45.455 4.18 0.00 0.00 2.83
358 359 2.100087 TCAAGTGCGCCGATCTATACAA 59.900 45.455 4.18 0.00 0.00 2.41
359 360 1.679153 TCAAGTGCGCCGATCTATACA 59.321 47.619 4.18 0.00 0.00 2.29
360 361 2.052157 GTCAAGTGCGCCGATCTATAC 58.948 52.381 4.18 0.00 0.00 1.47
361 362 1.679153 TGTCAAGTGCGCCGATCTATA 59.321 47.619 4.18 0.00 0.00 1.31
362 363 0.459899 TGTCAAGTGCGCCGATCTAT 59.540 50.000 4.18 0.00 0.00 1.98
363 364 0.459899 ATGTCAAGTGCGCCGATCTA 59.540 50.000 4.18 0.00 0.00 1.98
364 365 0.391661 AATGTCAAGTGCGCCGATCT 60.392 50.000 4.18 0.00 0.00 2.75
365 366 0.247814 CAATGTCAAGTGCGCCGATC 60.248 55.000 4.18 0.00 0.00 3.69
366 367 0.955428 ACAATGTCAAGTGCGCCGAT 60.955 50.000 4.18 0.00 0.00 4.18
367 368 1.163420 AACAATGTCAAGTGCGCCGA 61.163 50.000 4.18 0.00 0.00 5.54
368 369 0.317770 AAACAATGTCAAGTGCGCCG 60.318 50.000 4.18 0.00 0.00 6.46
369 370 1.851658 AAAACAATGTCAAGTGCGCC 58.148 45.000 4.18 0.00 0.00 6.53
386 387 3.625764 CACTTTGGTGACTCCGAGAAAAA 59.374 43.478 1.33 0.00 45.61 1.94
387 388 3.202906 CACTTTGGTGACTCCGAGAAAA 58.797 45.455 1.33 0.00 45.61 2.29
388 389 2.484770 CCACTTTGGTGACTCCGAGAAA 60.485 50.000 1.33 0.00 45.61 2.52
389 390 1.070134 CCACTTTGGTGACTCCGAGAA 59.930 52.381 1.33 0.00 45.61 2.87
390 391 0.679505 CCACTTTGGTGACTCCGAGA 59.320 55.000 1.33 0.00 45.61 4.04
391 392 3.217242 CCACTTTGGTGACTCCGAG 57.783 57.895 0.00 0.00 45.61 4.63
409 410 7.301789 GCAAACCAATTAAGAAGAAGAGAGAC 58.698 38.462 0.00 0.00 0.00 3.36
413 414 6.331369 TGGCAAACCAATTAAGAAGAAGAG 57.669 37.500 0.00 0.00 45.37 2.85
429 430 7.014092 TCAAAAAGAAATTGATGTGGCAAAC 57.986 32.000 0.00 0.00 32.10 2.93
446 453 8.772705 TGCTTAAAATGCCACTTTATCAAAAAG 58.227 29.630 0.00 0.00 0.00 2.27
482 489 3.821033 CCTTGGTGTACTTCTCCCTTTTG 59.179 47.826 0.00 0.00 0.00 2.44
483 490 3.750922 GCCTTGGTGTACTTCTCCCTTTT 60.751 47.826 0.00 0.00 0.00 2.27
487 499 0.035343 GGCCTTGGTGTACTTCTCCC 60.035 60.000 0.00 0.00 0.00 4.30
502 514 0.844660 ATCATGTGATGCAGAGGCCT 59.155 50.000 3.86 3.86 40.13 5.19
504 516 1.236628 GGATCATGTGATGCAGAGGC 58.763 55.000 9.29 0.00 41.72 4.70
505 517 2.632987 TGGATCATGTGATGCAGAGG 57.367 50.000 12.37 0.00 45.80 3.69
522 534 5.645624 TCGCATTAATAAATGGTTGTGTGG 58.354 37.500 0.72 0.00 42.39 4.17
552 567 6.460123 CCGGATCTTTATTTGGAACTTGGATG 60.460 42.308 0.00 0.00 0.00 3.51
593 610 4.202524 TGCTCCTTGGTGTATAGGTGTTTT 60.203 41.667 0.00 0.00 33.15 2.43
690 707 1.939934 CGTCTTTTCCACTGCTGTTCA 59.060 47.619 0.00 0.00 0.00 3.18
784 810 1.675116 GCTACAGTCGGGTCCTTTTCC 60.675 57.143 0.00 0.00 0.00 3.13
795 821 3.123621 GGTCATTGTTCTTGCTACAGTCG 59.876 47.826 0.00 0.00 0.00 4.18
973 1004 4.462280 GGCCGGGGTTAGGTGACG 62.462 72.222 2.18 0.00 0.00 4.35
974 1005 4.462280 CGGCCGGGGTTAGGTGAC 62.462 72.222 20.10 0.00 0.00 3.67
997 1028 4.514401 GGTGGGTGTGGCTTATATATAGC 58.486 47.826 7.84 7.84 37.91 2.97
1008 1039 2.597510 GAACTGGGTGGGTGTGGC 60.598 66.667 0.00 0.00 0.00 5.01
1101 1133 2.536329 CGATCGAGCAATGCAAGTTGAG 60.536 50.000 10.26 0.00 0.00 3.02
1162 1194 5.338381 CCCTAGAAGATTTGTCAACCTAGCA 60.338 44.000 0.00 0.00 0.00 3.49
1222 1259 0.992072 CGACGATGTGATCACACCAC 59.008 55.000 30.09 21.25 45.05 4.16
1223 1260 0.601057 ACGACGATGTGATCACACCA 59.399 50.000 30.09 8.92 45.05 4.17
1224 1261 1.269166 GACGACGATGTGATCACACC 58.731 55.000 30.09 20.84 45.05 4.16
1325 1371 4.069232 CTCCTTGAGCGCGTCCCA 62.069 66.667 8.43 0.00 0.00 4.37
1430 1479 1.372582 CAGCGCATGTACAGGTCAAT 58.627 50.000 11.47 0.00 0.00 2.57
1432 1481 1.079197 CCAGCGCATGTACAGGTCA 60.079 57.895 11.47 0.00 0.00 4.02
1592 1641 3.849951 GATGCTCCCCGGCTCGAA 61.850 66.667 0.00 0.00 0.00 3.71
1739 1791 2.514824 GCCCTTGATGCGGAGGAC 60.515 66.667 0.00 0.00 34.91 3.85
2062 2114 2.992114 AGGTCGCCGAAGTGCTCT 60.992 61.111 0.00 0.00 0.00 4.09
2458 2528 2.286872 CTAGAGCAGGCCAAGAATGTG 58.713 52.381 5.01 0.00 0.00 3.21
2472 2542 3.445805 ACAGTTTCTGACCTAGCTAGAGC 59.554 47.826 22.70 13.28 36.92 4.09
2554 2628 6.982852 TCACTTATCGTTATCCCTTCATCTC 58.017 40.000 0.00 0.00 0.00 2.75
2555 2629 6.978674 TCACTTATCGTTATCCCTTCATCT 57.021 37.500 0.00 0.00 0.00 2.90
2556 2630 6.647067 CCTTCACTTATCGTTATCCCTTCATC 59.353 42.308 0.00 0.00 0.00 2.92
2694 2776 1.811645 GCCCAGCTCTCTCCCGTATC 61.812 65.000 0.00 0.00 0.00 2.24
2712 2798 1.063174 GAATTGTGATCTCGCAGGTGC 59.937 52.381 0.00 0.00 37.69 5.01
2928 3015 2.858622 CACGGCAGTGGACATGATT 58.141 52.632 9.34 0.00 44.34 2.57
3028 3117 9.199982 CCATTGTTGGAATAATTATGCATCTTC 57.800 33.333 0.19 0.06 46.92 2.87
3029 3118 8.707449 ACCATTGTTGGAATAATTATGCATCTT 58.293 29.630 0.19 0.51 46.92 2.40
3063 3152 4.502950 GGACCTGTTGCAATCAAAATTGGA 60.503 41.667 0.59 0.00 42.18 3.53
3080 3170 6.179906 ACAGATCAATAATGTAGGGACCTG 57.820 41.667 0.00 0.00 0.00 4.00
3165 3260 6.975196 ATAGTAGCATGATCATAGGGCTAG 57.025 41.667 20.70 4.88 37.71 3.42


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.