Multiple sequence alignment - TraesCS5A01G303500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G303500 chr5A 100.000 2404 0 0 1 2404 512618262 512620665 0.000000e+00 4440
1 TraesCS5A01G303500 chr5A 78.788 297 38 13 2125 2404 512625934 512626222 2.460000e-40 176
2 TraesCS5A01G303500 chr5B 87.020 1641 104 43 821 2404 488113664 488115252 0.000000e+00 1749
3 TraesCS5A01G303500 chr5D 93.512 709 38 6 885 1589 407014748 407014044 0.000000e+00 1048
4 TraesCS5A01G303500 chr5D 88.207 831 42 21 1580 2404 407014015 407013235 0.000000e+00 941
5 TraesCS5A01G303500 chr5D 91.954 174 9 4 719 889 407016067 407015896 3.090000e-59 239
6 TraesCS5A01G303500 chr5D 83.475 236 21 7 384 618 407018267 407018049 1.130000e-48 204
7 TraesCS5A01G303500 chr5D 95.192 104 4 1 617 720 407018013 407017911 1.910000e-36 163
8 TraesCS5A01G303500 chr5D 80.717 223 20 11 2197 2399 406974359 406974140 4.140000e-33 152
9 TraesCS5A01G303500 chr4A 84.439 392 28 14 915 1288 448509055 448509431 2.940000e-94 355
10 TraesCS5A01G303500 chr4D 84.184 392 29 11 915 1288 122206122 122205746 1.370000e-92 350
11 TraesCS5A01G303500 chr4D 82.507 383 40 14 913 1288 30398572 30398934 6.450000e-81 311
12 TraesCS5A01G303500 chr7A 83.594 384 39 9 914 1288 213114639 213114271 2.960000e-89 339
13 TraesCS5A01G303500 chr7B 83.380 361 40 6 933 1288 171984449 171984794 1.390000e-82 316
14 TraesCS5A01G303500 chrUn 83.062 307 32 4 987 1288 100076748 100077039 6.590000e-66 261
15 TraesCS5A01G303500 chr4B 82.085 307 35 4 987 1288 672244142 672243851 6.640000e-61 244


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G303500 chr5A 512618262 512620665 2403 False 4440 4440 100.000 1 2404 1 chr5A.!!$F1 2403
1 TraesCS5A01G303500 chr5B 488113664 488115252 1588 False 1749 1749 87.020 821 2404 1 chr5B.!!$F1 1583
2 TraesCS5A01G303500 chr5D 407013235 407018267 5032 True 519 1048 90.468 384 2404 5 chr5D.!!$R2 2020

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
105 106 0.033601 ACAGTGGCACTTGGTGGAAA 60.034 50.0 19.43 0.0 33.64 3.13 F
355 356 0.033796 CAAGACATGGCAGGATGGGT 60.034 55.0 5.99 0.0 35.86 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1321 4376 0.179000 AGCGAAGGCAAGAATCCGAT 59.821 50.0 0.0 0.0 43.41 4.18 R
1681 4784 0.310854 GAACAAAACAGGACTGGCCG 59.689 55.0 0.0 0.0 43.43 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.505464 ACTATCGTTCCCTTGTCGAAG 57.495 47.619 0.00 0.00 37.16 3.79
23 24 2.824341 ACTATCGTTCCCTTGTCGAAGT 59.176 45.455 0.00 0.00 37.16 3.01
24 25 2.080286 ATCGTTCCCTTGTCGAAGTG 57.920 50.000 0.00 0.00 37.16 3.16
25 26 1.034356 TCGTTCCCTTGTCGAAGTGA 58.966 50.000 0.00 0.00 0.00 3.41
61 62 7.538303 AAAAACTTGCAGAAACCTGTTTATG 57.462 32.000 11.88 11.88 42.70 1.90
62 63 4.853924 ACTTGCAGAAACCTGTTTATGG 57.146 40.909 16.46 5.43 40.84 2.74
63 64 3.005791 ACTTGCAGAAACCTGTTTATGGC 59.994 43.478 16.46 11.00 40.84 4.40
64 65 1.539388 TGCAGAAACCTGTTTATGGCG 59.461 47.619 16.46 0.00 40.84 5.69
65 66 1.810151 GCAGAAACCTGTTTATGGCGA 59.190 47.619 16.46 0.00 40.84 5.54
66 67 2.159517 GCAGAAACCTGTTTATGGCGAG 60.160 50.000 16.46 0.00 40.84 5.03
67 68 3.074412 CAGAAACCTGTTTATGGCGAGT 58.926 45.455 9.03 0.00 37.92 4.18
68 69 4.250464 CAGAAACCTGTTTATGGCGAGTA 58.750 43.478 9.03 0.00 37.92 2.59
69 70 4.092968 CAGAAACCTGTTTATGGCGAGTAC 59.907 45.833 9.03 0.00 37.92 2.73
70 71 3.975168 AACCTGTTTATGGCGAGTACT 57.025 42.857 0.00 0.00 0.00 2.73
71 72 3.975168 ACCTGTTTATGGCGAGTACTT 57.025 42.857 0.00 0.00 0.00 2.24
72 73 3.858247 ACCTGTTTATGGCGAGTACTTC 58.142 45.455 0.00 0.00 0.00 3.01
73 74 3.259876 ACCTGTTTATGGCGAGTACTTCA 59.740 43.478 0.00 0.00 0.00 3.02
74 75 4.250464 CCTGTTTATGGCGAGTACTTCAA 58.750 43.478 0.00 0.00 0.00 2.69
75 76 4.092968 CCTGTTTATGGCGAGTACTTCAAC 59.907 45.833 0.00 0.00 0.00 3.18
76 77 4.633175 TGTTTATGGCGAGTACTTCAACA 58.367 39.130 0.00 0.00 0.00 3.33
77 78 4.688879 TGTTTATGGCGAGTACTTCAACAG 59.311 41.667 0.00 0.00 0.00 3.16
78 79 1.726853 ATGGCGAGTACTTCAACAGC 58.273 50.000 0.00 0.00 0.00 4.40
79 80 0.666274 TGGCGAGTACTTCAACAGCG 60.666 55.000 0.00 0.00 0.00 5.18
80 81 0.666577 GGCGAGTACTTCAACAGCGT 60.667 55.000 0.00 0.00 0.00 5.07
81 82 1.401931 GGCGAGTACTTCAACAGCGTA 60.402 52.381 0.00 0.00 0.00 4.42
82 83 1.912110 GCGAGTACTTCAACAGCGTAG 59.088 52.381 0.00 0.00 0.00 3.51
95 96 3.862124 CGTAGCAGACAGTGGCAC 58.138 61.111 10.29 10.29 0.00 5.01
96 97 1.290324 CGTAGCAGACAGTGGCACT 59.710 57.895 15.88 15.88 0.00 4.40
97 98 0.319900 CGTAGCAGACAGTGGCACTT 60.320 55.000 19.43 9.74 0.00 3.16
98 99 1.151668 GTAGCAGACAGTGGCACTTG 58.848 55.000 19.43 15.32 0.00 3.16
99 100 0.035317 TAGCAGACAGTGGCACTTGG 59.965 55.000 19.43 10.61 0.00 3.61
100 101 1.526917 GCAGACAGTGGCACTTGGT 60.527 57.895 19.43 14.21 0.00 3.67
101 102 1.789078 GCAGACAGTGGCACTTGGTG 61.789 60.000 19.43 15.55 36.51 4.17
102 103 1.149174 AGACAGTGGCACTTGGTGG 59.851 57.895 19.43 8.99 33.64 4.61
103 104 1.148273 GACAGTGGCACTTGGTGGA 59.852 57.895 19.43 0.00 33.64 4.02
104 105 0.465460 GACAGTGGCACTTGGTGGAA 60.465 55.000 19.43 0.00 33.64 3.53
105 106 0.033601 ACAGTGGCACTTGGTGGAAA 60.034 50.000 19.43 0.00 33.64 3.13
106 107 1.331214 CAGTGGCACTTGGTGGAAAT 58.669 50.000 19.43 0.00 33.64 2.17
107 108 1.688197 CAGTGGCACTTGGTGGAAATT 59.312 47.619 19.43 0.00 33.64 1.82
108 109 1.688197 AGTGGCACTTGGTGGAAATTG 59.312 47.619 15.88 0.00 33.64 2.32
109 110 1.686052 GTGGCACTTGGTGGAAATTGA 59.314 47.619 11.13 0.00 33.64 2.57
110 111 2.299867 GTGGCACTTGGTGGAAATTGAT 59.700 45.455 11.13 0.00 33.64 2.57
111 112 2.971330 TGGCACTTGGTGGAAATTGATT 59.029 40.909 0.00 0.00 33.64 2.57
112 113 3.006752 TGGCACTTGGTGGAAATTGATTC 59.993 43.478 0.00 0.00 37.31 2.52
125 126 6.596309 GAAATTGATTCCTTTCCTGGTTCT 57.404 37.500 0.00 0.00 31.44 3.01
126 127 5.990120 AATTGATTCCTTTCCTGGTTCTG 57.010 39.130 0.00 0.00 0.00 3.02
127 128 2.795329 TGATTCCTTTCCTGGTTCTGC 58.205 47.619 0.00 0.00 0.00 4.26
128 129 2.376518 TGATTCCTTTCCTGGTTCTGCT 59.623 45.455 0.00 0.00 0.00 4.24
129 130 3.587061 TGATTCCTTTCCTGGTTCTGCTA 59.413 43.478 0.00 0.00 0.00 3.49
130 131 4.228210 TGATTCCTTTCCTGGTTCTGCTAT 59.772 41.667 0.00 0.00 0.00 2.97
131 132 4.657814 TTCCTTTCCTGGTTCTGCTATT 57.342 40.909 0.00 0.00 0.00 1.73
132 133 4.222124 TCCTTTCCTGGTTCTGCTATTC 57.778 45.455 0.00 0.00 0.00 1.75
133 134 3.846588 TCCTTTCCTGGTTCTGCTATTCT 59.153 43.478 0.00 0.00 0.00 2.40
134 135 3.944015 CCTTTCCTGGTTCTGCTATTCTG 59.056 47.826 0.00 0.00 0.00 3.02
135 136 4.323792 CCTTTCCTGGTTCTGCTATTCTGA 60.324 45.833 0.00 0.00 0.00 3.27
136 137 3.895232 TCCTGGTTCTGCTATTCTGAC 57.105 47.619 0.00 0.00 0.00 3.51
137 138 3.445008 TCCTGGTTCTGCTATTCTGACT 58.555 45.455 0.00 0.00 0.00 3.41
138 139 3.449018 TCCTGGTTCTGCTATTCTGACTC 59.551 47.826 0.00 0.00 0.00 3.36
139 140 3.450457 CCTGGTTCTGCTATTCTGACTCT 59.550 47.826 0.00 0.00 0.00 3.24
140 141 4.431809 CTGGTTCTGCTATTCTGACTCTG 58.568 47.826 0.00 0.00 0.00 3.35
141 142 3.834813 TGGTTCTGCTATTCTGACTCTGT 59.165 43.478 0.00 0.00 0.00 3.41
142 143 5.016831 TGGTTCTGCTATTCTGACTCTGTA 58.983 41.667 0.00 0.00 0.00 2.74
143 144 5.658634 TGGTTCTGCTATTCTGACTCTGTAT 59.341 40.000 0.00 0.00 0.00 2.29
144 145 6.833933 TGGTTCTGCTATTCTGACTCTGTATA 59.166 38.462 0.00 0.00 0.00 1.47
145 146 7.142680 GGTTCTGCTATTCTGACTCTGTATAC 58.857 42.308 0.00 0.00 0.00 1.47
146 147 7.201830 GGTTCTGCTATTCTGACTCTGTATACA 60.202 40.741 5.25 5.25 0.00 2.29
147 148 8.356657 GTTCTGCTATTCTGACTCTGTATACAT 58.643 37.037 5.91 0.00 0.00 2.29
148 149 7.880105 TCTGCTATTCTGACTCTGTATACATG 58.120 38.462 5.91 5.33 0.00 3.21
149 150 7.503902 TCTGCTATTCTGACTCTGTATACATGT 59.496 37.037 5.91 2.69 0.00 3.21
150 151 8.011844 TGCTATTCTGACTCTGTATACATGTT 57.988 34.615 2.30 0.00 0.00 2.71
151 152 9.131791 TGCTATTCTGACTCTGTATACATGTTA 57.868 33.333 2.30 4.98 0.00 2.41
155 156 9.755804 ATTCTGACTCTGTATACATGTTATGTG 57.244 33.333 2.30 0.00 44.60 3.21
156 157 7.203218 TCTGACTCTGTATACATGTTATGTGC 58.797 38.462 2.30 0.00 44.60 4.57
157 158 5.977129 TGACTCTGTATACATGTTATGTGCG 59.023 40.000 2.30 0.00 44.60 5.34
158 159 5.902681 ACTCTGTATACATGTTATGTGCGT 58.097 37.500 2.30 0.00 44.60 5.24
159 160 7.034685 ACTCTGTATACATGTTATGTGCGTA 57.965 36.000 2.30 0.00 44.60 4.42
160 161 7.658261 ACTCTGTATACATGTTATGTGCGTAT 58.342 34.615 2.30 0.00 44.60 3.06
161 162 8.789762 ACTCTGTATACATGTTATGTGCGTATA 58.210 33.333 2.30 0.00 44.60 1.47
162 163 9.620660 CTCTGTATACATGTTATGTGCGTATAA 57.379 33.333 2.30 0.00 44.60 0.98
163 164 9.401873 TCTGTATACATGTTATGTGCGTATAAC 57.598 33.333 2.30 13.17 44.60 1.89
169 170 4.185394 TGTTATGTGCGTATAACACCAGG 58.815 43.478 16.90 0.00 44.35 4.45
170 171 4.186159 GTTATGTGCGTATAACACCAGGT 58.814 43.478 14.50 0.00 41.16 4.00
171 172 2.843401 TGTGCGTATAACACCAGGTT 57.157 45.000 0.00 0.00 43.62 3.50
172 173 3.957591 TGTGCGTATAACACCAGGTTA 57.042 42.857 0.00 0.00 45.55 2.85
173 174 3.587923 TGTGCGTATAACACCAGGTTAC 58.412 45.455 0.00 0.00 44.36 2.50
174 175 2.931969 GTGCGTATAACACCAGGTTACC 59.068 50.000 0.00 0.00 44.36 2.85
175 176 2.195922 GCGTATAACACCAGGTTACCG 58.804 52.381 0.00 0.00 44.36 4.02
176 177 2.159254 GCGTATAACACCAGGTTACCGA 60.159 50.000 0.00 0.00 44.36 4.69
177 178 3.699067 CGTATAACACCAGGTTACCGAG 58.301 50.000 0.00 0.00 44.36 4.63
178 179 3.129287 CGTATAACACCAGGTTACCGAGT 59.871 47.826 0.00 0.00 44.36 4.18
179 180 3.881937 ATAACACCAGGTTACCGAGTC 57.118 47.619 0.00 0.00 44.36 3.36
180 181 0.316204 AACACCAGGTTACCGAGTCG 59.684 55.000 5.29 5.29 38.15 4.18
181 182 3.033035 AACACCAGGTTACCGAGTCGG 62.033 57.143 29.80 29.80 42.10 4.79
182 183 5.950829 TAACACCAGGTTACCGAGTCGGA 62.951 52.174 37.27 18.21 44.51 4.55
191 192 3.752704 CGAGTCGGAGAGGATCCC 58.247 66.667 8.55 0.00 46.50 3.85
192 193 1.152943 CGAGTCGGAGAGGATCCCA 60.153 63.158 8.55 0.00 46.50 4.37
193 194 1.169661 CGAGTCGGAGAGGATCCCAG 61.170 65.000 8.55 0.00 46.50 4.45
194 195 0.106419 GAGTCGGAGAGGATCCCAGT 60.106 60.000 8.55 0.00 46.50 4.00
195 196 0.396417 AGTCGGAGAGGATCCCAGTG 60.396 60.000 8.55 0.00 46.50 3.66
196 197 0.395862 GTCGGAGAGGATCCCAGTGA 60.396 60.000 8.55 0.00 46.50 3.41
197 198 0.558220 TCGGAGAGGATCCCAGTGAT 59.442 55.000 8.55 0.00 46.50 3.06
198 199 1.062886 TCGGAGAGGATCCCAGTGATT 60.063 52.381 8.55 0.00 46.50 2.57
199 200 1.342819 CGGAGAGGATCCCAGTGATTC 59.657 57.143 8.55 0.00 46.50 2.52
200 201 2.402564 GGAGAGGATCCCAGTGATTCA 58.597 52.381 8.55 0.00 43.01 2.57
201 202 2.978278 GGAGAGGATCCCAGTGATTCAT 59.022 50.000 8.55 0.00 43.01 2.57
202 203 3.007831 GGAGAGGATCCCAGTGATTCATC 59.992 52.174 8.55 0.00 43.01 2.92
203 204 3.645212 GAGAGGATCCCAGTGATTCATCA 59.355 47.826 8.55 0.00 33.66 3.07
204 205 3.647113 AGAGGATCCCAGTGATTCATCAG 59.353 47.826 8.55 0.00 34.17 2.90
205 206 3.390639 GAGGATCCCAGTGATTCATCAGT 59.609 47.826 8.55 0.00 40.95 3.41
206 207 3.784763 AGGATCCCAGTGATTCATCAGTT 59.215 43.478 8.55 0.00 38.35 3.16
207 208 3.881688 GGATCCCAGTGATTCATCAGTTG 59.118 47.826 0.00 0.00 38.35 3.16
208 209 2.715046 TCCCAGTGATTCATCAGTTGC 58.285 47.619 0.00 0.00 38.35 4.17
209 210 1.399440 CCCAGTGATTCATCAGTTGCG 59.601 52.381 0.00 0.00 38.35 4.85
210 211 2.349590 CCAGTGATTCATCAGTTGCGA 58.650 47.619 0.00 0.00 38.35 5.10
211 212 2.743664 CCAGTGATTCATCAGTTGCGAA 59.256 45.455 0.00 0.00 38.35 4.70
212 213 3.189080 CCAGTGATTCATCAGTTGCGAAA 59.811 43.478 0.00 0.00 38.35 3.46
213 214 4.142534 CCAGTGATTCATCAGTTGCGAAAT 60.143 41.667 0.00 0.00 38.35 2.17
214 215 5.396484 CAGTGATTCATCAGTTGCGAAATT 58.604 37.500 0.00 0.00 38.35 1.82
215 216 5.860182 CAGTGATTCATCAGTTGCGAAATTT 59.140 36.000 0.00 0.00 38.35 1.82
216 217 7.022979 CAGTGATTCATCAGTTGCGAAATTTA 58.977 34.615 0.00 0.00 38.35 1.40
217 218 7.699391 CAGTGATTCATCAGTTGCGAAATTTAT 59.301 33.333 0.00 0.00 38.35 1.40
218 219 7.912250 AGTGATTCATCAGTTGCGAAATTTATC 59.088 33.333 0.00 0.00 37.15 1.75
219 220 7.697710 GTGATTCATCAGTTGCGAAATTTATCA 59.302 33.333 0.00 0.00 37.51 2.15
220 221 8.407832 TGATTCATCAGTTGCGAAATTTATCAT 58.592 29.630 0.00 0.00 32.11 2.45
221 222 9.241317 GATTCATCAGTTGCGAAATTTATCATT 57.759 29.630 0.00 0.00 0.00 2.57
222 223 8.984891 TTCATCAGTTGCGAAATTTATCATTT 57.015 26.923 0.00 0.00 0.00 2.32
224 225 9.502145 TCATCAGTTGCGAAATTTATCATTTAC 57.498 29.630 0.00 0.00 0.00 2.01
225 226 9.288124 CATCAGTTGCGAAATTTATCATTTACA 57.712 29.630 0.00 0.00 0.00 2.41
227 228 9.853555 TCAGTTGCGAAATTTATCATTTACATT 57.146 25.926 0.00 0.00 0.00 2.71
231 232 9.794685 TTGCGAAATTTATCATTTACATTAGCA 57.205 25.926 0.00 0.00 0.00 3.49
232 233 9.794685 TGCGAAATTTATCATTTACATTAGCAA 57.205 25.926 0.00 0.00 0.00 3.91
244 245 9.817365 CATTTACATTAGCAAGATATCTTTCGG 57.183 33.333 15.49 6.11 33.11 4.30
245 246 5.931441 ACATTAGCAAGATATCTTTCGGC 57.069 39.130 15.49 15.30 33.11 5.54
246 247 5.615289 ACATTAGCAAGATATCTTTCGGCT 58.385 37.500 24.19 24.19 36.86 5.52
247 248 6.058183 ACATTAGCAAGATATCTTTCGGCTT 58.942 36.000 25.30 12.10 35.34 4.35
248 249 5.991328 TTAGCAAGATATCTTTCGGCTTG 57.009 39.130 25.30 12.31 35.34 4.01
249 250 3.209410 AGCAAGATATCTTTCGGCTTGG 58.791 45.455 18.38 6.82 37.14 3.61
250 251 2.945668 GCAAGATATCTTTCGGCTTGGT 59.054 45.455 15.49 0.00 37.14 3.67
251 252 3.002759 GCAAGATATCTTTCGGCTTGGTC 59.997 47.826 15.49 0.00 37.14 4.02
252 253 3.477210 AGATATCTTTCGGCTTGGTCC 57.523 47.619 0.00 0.00 0.00 4.46
253 254 3.041946 AGATATCTTTCGGCTTGGTCCT 58.958 45.455 0.00 0.00 0.00 3.85
254 255 3.456277 AGATATCTTTCGGCTTGGTCCTT 59.544 43.478 0.00 0.00 0.00 3.36
255 256 4.654262 AGATATCTTTCGGCTTGGTCCTTA 59.346 41.667 0.00 0.00 0.00 2.69
256 257 3.713826 ATCTTTCGGCTTGGTCCTTAA 57.286 42.857 0.00 0.00 0.00 1.85
257 258 3.495434 TCTTTCGGCTTGGTCCTTAAA 57.505 42.857 0.00 0.00 0.00 1.52
258 259 3.143728 TCTTTCGGCTTGGTCCTTAAAC 58.856 45.455 0.00 0.00 0.00 2.01
259 260 2.642154 TTCGGCTTGGTCCTTAAACA 57.358 45.000 0.00 0.00 0.00 2.83
260 261 2.642154 TCGGCTTGGTCCTTAAACAA 57.358 45.000 0.00 0.00 0.00 2.83
261 262 2.933573 TCGGCTTGGTCCTTAAACAAA 58.066 42.857 0.00 0.00 0.00 2.83
262 263 2.619646 TCGGCTTGGTCCTTAAACAAAC 59.380 45.455 0.00 0.00 0.00 2.93
263 264 2.603652 CGGCTTGGTCCTTAAACAAACG 60.604 50.000 0.00 0.00 0.00 3.60
264 265 2.619646 GGCTTGGTCCTTAAACAAACGA 59.380 45.455 0.00 0.00 0.00 3.85
265 266 3.304458 GGCTTGGTCCTTAAACAAACGAG 60.304 47.826 0.00 0.00 0.00 4.18
266 267 3.562557 GCTTGGTCCTTAAACAAACGAGA 59.437 43.478 0.00 0.00 0.00 4.04
267 268 4.319549 GCTTGGTCCTTAAACAAACGAGAG 60.320 45.833 0.00 0.00 0.00 3.20
268 269 4.675976 TGGTCCTTAAACAAACGAGAGA 57.324 40.909 0.00 0.00 0.00 3.10
269 270 5.223449 TGGTCCTTAAACAAACGAGAGAT 57.777 39.130 0.00 0.00 0.00 2.75
270 271 6.349243 TGGTCCTTAAACAAACGAGAGATA 57.651 37.500 0.00 0.00 0.00 1.98
271 272 6.761312 TGGTCCTTAAACAAACGAGAGATAA 58.239 36.000 0.00 0.00 0.00 1.75
272 273 6.872020 TGGTCCTTAAACAAACGAGAGATAAG 59.128 38.462 0.00 0.00 0.00 1.73
273 274 7.095270 GGTCCTTAAACAAACGAGAGATAAGA 58.905 38.462 0.00 0.00 0.00 2.10
274 275 7.764901 GGTCCTTAAACAAACGAGAGATAAGAT 59.235 37.037 0.00 0.00 0.00 2.40
275 276 8.809478 GTCCTTAAACAAACGAGAGATAAGATC 58.191 37.037 0.00 0.00 0.00 2.75
276 277 8.750298 TCCTTAAACAAACGAGAGATAAGATCT 58.250 33.333 0.00 0.00 43.70 2.75
279 280 7.972623 AAACAAACGAGAGATAAGATCTACG 57.027 36.000 0.00 11.38 40.38 3.51
280 281 6.680874 ACAAACGAGAGATAAGATCTACGT 57.319 37.500 0.00 12.29 46.36 3.57
285 286 7.086230 ACGAGAGATAAGATCTACGTTTTGT 57.914 36.000 0.00 0.00 44.06 2.83
286 287 7.536855 ACGAGAGATAAGATCTACGTTTTGTT 58.463 34.615 0.00 0.00 44.06 2.83
287 288 8.671921 ACGAGAGATAAGATCTACGTTTTGTTA 58.328 33.333 0.00 0.00 44.06 2.41
288 289 8.945930 CGAGAGATAAGATCTACGTTTTGTTAC 58.054 37.037 0.00 0.00 40.38 2.50
321 322 8.862325 ATTGTATTGTTGGACATTTCTACAGA 57.138 30.769 0.00 0.00 0.00 3.41
322 323 7.905604 TGTATTGTTGGACATTTCTACAGAG 57.094 36.000 0.00 0.00 0.00 3.35
323 324 7.676004 TGTATTGTTGGACATTTCTACAGAGA 58.324 34.615 0.00 0.00 0.00 3.10
324 325 8.321353 TGTATTGTTGGACATTTCTACAGAGAT 58.679 33.333 0.00 0.00 0.00 2.75
325 326 7.856145 ATTGTTGGACATTTCTACAGAGATC 57.144 36.000 0.00 0.00 0.00 2.75
326 327 6.611613 TGTTGGACATTTCTACAGAGATCT 57.388 37.500 0.00 0.00 0.00 2.75
327 328 7.009179 TGTTGGACATTTCTACAGAGATCTT 57.991 36.000 0.00 0.00 0.00 2.40
328 329 6.875726 TGTTGGACATTTCTACAGAGATCTTG 59.124 38.462 0.00 0.00 0.00 3.02
329 330 5.982356 TGGACATTTCTACAGAGATCTTGG 58.018 41.667 0.00 0.00 0.00 3.61
330 331 4.813697 GGACATTTCTACAGAGATCTTGGC 59.186 45.833 0.00 0.00 0.00 4.52
331 332 4.775236 ACATTTCTACAGAGATCTTGGCC 58.225 43.478 0.00 0.00 0.00 5.36
332 333 4.472833 ACATTTCTACAGAGATCTTGGCCT 59.527 41.667 3.32 0.00 0.00 5.19
333 334 4.478206 TTTCTACAGAGATCTTGGCCTG 57.522 45.455 3.32 1.84 0.00 4.85
334 335 3.107402 TCTACAGAGATCTTGGCCTGT 57.893 47.619 16.43 16.43 41.98 4.00
335 336 2.762887 TCTACAGAGATCTTGGCCTGTG 59.237 50.000 19.81 12.25 39.83 3.66
336 337 0.035630 ACAGAGATCTTGGCCTGTGC 60.036 55.000 12.63 0.00 38.32 4.57
337 338 0.035725 CAGAGATCTTGGCCTGTGCA 60.036 55.000 3.32 0.00 40.13 4.57
338 339 0.694771 AGAGATCTTGGCCTGTGCAA 59.305 50.000 3.32 0.00 40.13 4.08
339 340 1.093159 GAGATCTTGGCCTGTGCAAG 58.907 55.000 3.32 0.00 40.13 4.01
340 341 0.694771 AGATCTTGGCCTGTGCAAGA 59.305 50.000 3.32 4.36 40.13 3.02
341 342 0.807496 GATCTTGGCCTGTGCAAGAC 59.193 55.000 3.32 0.00 37.41 3.01
342 343 0.111061 ATCTTGGCCTGTGCAAGACA 59.889 50.000 3.32 0.00 37.41 3.41
343 344 0.111061 TCTTGGCCTGTGCAAGACAT 59.889 50.000 3.32 0.00 40.13 3.06
344 345 0.242825 CTTGGCCTGTGCAAGACATG 59.757 55.000 3.32 0.00 40.13 3.21
345 346 1.180456 TTGGCCTGTGCAAGACATGG 61.180 55.000 3.32 0.00 40.13 3.66
346 347 2.570181 GCCTGTGCAAGACATGGC 59.430 61.111 0.00 0.00 39.86 4.40
347 348 2.270257 GCCTGTGCAAGACATGGCA 61.270 57.895 0.00 0.00 43.23 4.92
348 349 1.880894 CCTGTGCAAGACATGGCAG 59.119 57.895 0.00 0.00 41.35 4.85
349 350 1.592400 CCTGTGCAAGACATGGCAGG 61.592 60.000 0.00 0.00 41.35 4.85
350 351 0.607217 CTGTGCAAGACATGGCAGGA 60.607 55.000 5.99 0.00 41.35 3.86
351 352 0.038599 TGTGCAAGACATGGCAGGAT 59.961 50.000 5.99 0.00 41.35 3.24
352 353 0.454600 GTGCAAGACATGGCAGGATG 59.545 55.000 5.99 3.04 41.35 3.51
353 354 0.681887 TGCAAGACATGGCAGGATGG 60.682 55.000 5.99 0.00 34.58 3.51
354 355 1.389609 GCAAGACATGGCAGGATGGG 61.390 60.000 5.99 0.00 35.86 4.00
355 356 0.033796 CAAGACATGGCAGGATGGGT 60.034 55.000 5.99 0.00 35.86 4.51
356 357 0.033796 AAGACATGGCAGGATGGGTG 60.034 55.000 5.99 0.00 35.86 4.61
357 358 1.454479 GACATGGCAGGATGGGTGG 60.454 63.158 5.99 0.00 35.86 4.61
358 359 2.215451 GACATGGCAGGATGGGTGGT 62.215 60.000 5.99 0.00 35.86 4.16
359 360 1.755395 CATGGCAGGATGGGTGGTG 60.755 63.158 0.00 0.00 35.86 4.17
360 361 1.930133 ATGGCAGGATGGGTGGTGA 60.930 57.895 0.00 0.00 35.86 4.02
361 362 2.044946 GGCAGGATGGGTGGTGAC 60.045 66.667 0.00 0.00 35.86 3.67
362 363 2.606587 GGCAGGATGGGTGGTGACT 61.607 63.158 0.00 0.00 35.86 3.41
363 364 1.078143 GCAGGATGGGTGGTGACTC 60.078 63.158 0.00 0.00 35.86 3.36
364 365 1.557269 GCAGGATGGGTGGTGACTCT 61.557 60.000 0.00 0.00 35.86 3.24
365 366 0.539051 CAGGATGGGTGGTGACTCTC 59.461 60.000 0.00 0.00 0.00 3.20
366 367 0.618968 AGGATGGGTGGTGACTCTCC 60.619 60.000 0.00 0.00 0.00 3.71
367 368 0.909610 GGATGGGTGGTGACTCTCCA 60.910 60.000 0.00 0.00 0.00 3.86
368 369 1.207791 GATGGGTGGTGACTCTCCAT 58.792 55.000 3.17 0.00 37.49 3.41
369 370 1.561542 GATGGGTGGTGACTCTCCATT 59.438 52.381 3.17 0.00 36.02 3.16
370 371 2.335681 TGGGTGGTGACTCTCCATTA 57.664 50.000 3.17 0.00 37.30 1.90
371 372 2.187958 TGGGTGGTGACTCTCCATTAG 58.812 52.381 3.17 0.00 37.30 1.73
372 373 2.225522 TGGGTGGTGACTCTCCATTAGA 60.226 50.000 3.17 0.00 37.30 2.10
373 374 2.168728 GGGTGGTGACTCTCCATTAGAC 59.831 54.545 3.17 0.00 37.30 2.59
374 375 2.832129 GGTGGTGACTCTCCATTAGACA 59.168 50.000 3.17 0.00 37.30 3.41
375 376 3.368531 GGTGGTGACTCTCCATTAGACAC 60.369 52.174 3.17 0.00 38.41 3.67
376 377 3.511934 GTGGTGACTCTCCATTAGACACT 59.488 47.826 3.17 0.00 38.90 3.55
377 378 3.764434 TGGTGACTCTCCATTAGACACTC 59.236 47.826 0.00 0.00 38.90 3.51
378 379 3.181495 GGTGACTCTCCATTAGACACTCG 60.181 52.174 0.00 0.00 38.90 4.18
379 380 3.690139 GTGACTCTCCATTAGACACTCGA 59.310 47.826 0.00 0.00 36.91 4.04
380 381 4.336993 GTGACTCTCCATTAGACACTCGAT 59.663 45.833 0.00 0.00 36.91 3.59
381 382 4.576873 TGACTCTCCATTAGACACTCGATC 59.423 45.833 0.00 0.00 0.00 3.69
382 383 3.562141 ACTCTCCATTAGACACTCGATCG 59.438 47.826 9.36 9.36 0.00 3.69
402 403 2.541556 GAGTGAGAAGTCCATAACCGC 58.458 52.381 0.00 0.00 0.00 5.68
437 438 0.740868 GACAGAGCATGGCACGCTAA 60.741 55.000 8.55 0.00 40.63 3.09
467 468 2.987149 CGACTACACACCAGCTTAACAG 59.013 50.000 0.00 0.00 0.00 3.16
468 469 3.326747 GACTACACACCAGCTTAACAGG 58.673 50.000 0.00 0.00 0.00 4.00
469 470 2.076863 CTACACACCAGCTTAACAGGC 58.923 52.381 0.00 0.00 0.00 4.85
470 471 0.537371 ACACACCAGCTTAACAGGCC 60.537 55.000 0.00 0.00 0.00 5.19
471 472 1.302511 ACACCAGCTTAACAGGCCG 60.303 57.895 0.00 0.00 0.00 6.13
477 478 2.481471 GCTTAACAGGCCGGGCATC 61.481 63.158 31.59 3.99 0.00 3.91
494 495 0.693049 ATCGGCCTCCAGAACAAAGT 59.307 50.000 0.00 0.00 0.00 2.66
514 515 5.892160 AGTAGCAGTACAACAGTATTCGA 57.108 39.130 0.00 0.00 0.00 3.71
516 517 4.785511 AGCAGTACAACAGTATTCGACT 57.214 40.909 0.00 0.00 39.82 4.18
517 518 5.892160 AGCAGTACAACAGTATTCGACTA 57.108 39.130 0.00 0.00 35.64 2.59
518 519 6.452494 AGCAGTACAACAGTATTCGACTAT 57.548 37.500 0.00 0.00 35.64 2.12
519 520 6.864342 AGCAGTACAACAGTATTCGACTATT 58.136 36.000 0.00 0.00 35.64 1.73
520 521 7.321153 AGCAGTACAACAGTATTCGACTATTT 58.679 34.615 0.00 0.00 35.64 1.40
521 522 7.275779 AGCAGTACAACAGTATTCGACTATTTG 59.724 37.037 0.00 0.00 35.64 2.32
522 523 7.464178 GCAGTACAACAGTATTCGACTATTTGG 60.464 40.741 0.00 0.00 35.64 3.28
523 524 5.796350 ACAACAGTATTCGACTATTTGGC 57.204 39.130 0.00 0.00 35.64 4.52
524 525 4.634443 ACAACAGTATTCGACTATTTGGCC 59.366 41.667 0.00 0.00 35.64 5.36
525 526 4.481368 ACAGTATTCGACTATTTGGCCA 57.519 40.909 0.00 0.00 35.64 5.36
526 527 4.189231 ACAGTATTCGACTATTTGGCCAC 58.811 43.478 3.88 0.00 35.64 5.01
527 528 4.081087 ACAGTATTCGACTATTTGGCCACT 60.081 41.667 3.88 0.00 35.64 4.00
528 529 4.271049 CAGTATTCGACTATTTGGCCACTG 59.729 45.833 3.88 0.00 35.64 3.66
529 530 3.627395 ATTCGACTATTTGGCCACTGA 57.373 42.857 3.88 0.00 0.00 3.41
530 531 2.672961 TCGACTATTTGGCCACTGAG 57.327 50.000 3.88 5.00 0.00 3.35
531 532 1.009829 CGACTATTTGGCCACTGAGC 58.990 55.000 3.88 0.00 0.00 4.26
532 533 1.009829 GACTATTTGGCCACTGAGCG 58.990 55.000 3.88 0.00 0.00 5.03
533 534 0.324943 ACTATTTGGCCACTGAGCGT 59.675 50.000 3.88 0.00 0.00 5.07
534 535 1.009829 CTATTTGGCCACTGAGCGTC 58.990 55.000 3.88 0.00 0.00 5.19
535 536 0.323302 TATTTGGCCACTGAGCGTCA 59.677 50.000 3.88 0.00 0.00 4.35
553 561 8.982685 TGAGCGTCATATTTATCTTCAGAAATC 58.017 33.333 0.00 0.00 0.00 2.17
557 565 9.481340 CGTCATATTTATCTTCAGAAATCTCCA 57.519 33.333 0.00 0.00 0.00 3.86
601 610 5.744666 TGCTAACCACAAAGTAGTTTGAC 57.255 39.130 26.12 9.13 45.22 3.18
613 622 6.394025 AAGTAGTTTGACGCCCAAATAAAA 57.606 33.333 6.81 0.00 45.48 1.52
636 682 0.251922 ACGTAGGTGGTAGGGCAGAA 60.252 55.000 0.00 0.00 0.00 3.02
738 2629 1.287146 AGCCCCATGAATCTGCTTTCT 59.713 47.619 0.00 0.00 0.00 2.52
774 2665 1.025647 CCTGCTTCTCTTGCTGGCTC 61.026 60.000 0.00 0.00 41.32 4.70
775 2666 0.321387 CTGCTTCTCTTGCTGGCTCA 60.321 55.000 0.00 0.00 0.00 4.26
776 2667 0.604780 TGCTTCTCTTGCTGGCTCAC 60.605 55.000 0.00 0.00 0.00 3.51
788 2679 2.023673 CTGGCTCACAGTTTTCACCAA 58.976 47.619 0.00 0.00 42.42 3.67
789 2680 2.023673 TGGCTCACAGTTTTCACCAAG 58.976 47.619 0.00 0.00 0.00 3.61
792 2683 3.243201 GGCTCACAGTTTTCACCAAGAAG 60.243 47.826 0.00 0.00 37.57 2.85
797 2688 6.987386 TCACAGTTTTCACCAAGAAGAAAAA 58.013 32.000 0.00 0.00 43.09 1.94
838 2729 1.515954 GCCGTCTCCAGAATCCGAA 59.484 57.895 0.00 0.00 0.00 4.30
872 2768 4.935630 CGGCTTCCGTTTTCAACC 57.064 55.556 0.00 0.00 42.73 3.77
883 2779 6.403866 TCCGTTTTCAACCACTACTAGTTA 57.596 37.500 0.00 0.00 0.00 2.24
1175 4230 2.224670 TGAACCAGTTCAAGCCGGTATT 60.225 45.455 10.71 0.00 45.56 1.89
1176 4231 3.008157 TGAACCAGTTCAAGCCGGTATTA 59.992 43.478 10.71 0.00 45.56 0.98
1177 4232 3.706600 ACCAGTTCAAGCCGGTATTAA 57.293 42.857 1.90 0.00 0.00 1.40
1277 4332 1.009335 CACAACGACCTCGACGACA 60.009 57.895 0.78 0.00 43.02 4.35
1317 4372 2.666190 CGGGTATGCATGGGAGCG 60.666 66.667 10.16 0.00 37.31 5.03
1321 4376 1.371183 GTATGCATGGGAGCGCCTA 59.629 57.895 10.16 0.00 37.31 3.93
1368 4423 5.411669 CCTTCTGATGTTAGTTTGTACCACC 59.588 44.000 0.00 0.00 0.00 4.61
1389 4444 2.363680 CCTACTGTACCTCTGCATCAGG 59.636 54.545 9.82 9.82 37.03 3.86
1414 4469 7.201670 GGTTATGGATCGGTAAAGTTTAAGTGG 60.202 40.741 0.00 0.00 0.00 4.00
1424 4479 6.321945 GGTAAAGTTTAAGTGGAAAGTTGGGA 59.678 38.462 0.00 0.00 33.29 4.37
1429 4485 2.586648 AGTGGAAAGTTGGGATCACC 57.413 50.000 0.00 0.00 40.81 4.02
1436 4492 1.444933 AGTTGGGATCACCTTGGTGA 58.555 50.000 22.70 22.70 41.11 4.02
1463 4519 4.622701 ATGGCGAGTGAAATTAAGCTTC 57.377 40.909 0.00 0.00 0.00 3.86
1472 4528 5.985530 AGTGAAATTAAGCTTCTGTTTTGGC 59.014 36.000 0.00 0.00 0.00 4.52
1477 4533 0.883833 AGCTTCTGTTTTGGCGATGG 59.116 50.000 0.00 0.00 0.00 3.51
1531 4591 1.611977 CGAGGGTCTGTGACTTGTGTA 59.388 52.381 0.00 0.00 32.47 2.90
1534 4594 2.365617 AGGGTCTGTGACTTGTGTAGTG 59.634 50.000 0.00 0.00 37.17 2.74
1538 4598 4.238514 GTCTGTGACTTGTGTAGTGATCC 58.761 47.826 0.00 0.00 37.17 3.36
1544 4604 5.634020 GTGACTTGTGTAGTGATCCTGTAAC 59.366 44.000 0.00 0.00 37.17 2.50
1554 4617 9.841295 TGTAGTGATCCTGTAACTTTTAGTTTT 57.159 29.630 0.00 0.00 39.51 2.43
1587 4689 6.482641 CACATGTTAATCCATTGGAGAGAGAG 59.517 42.308 11.78 1.47 34.05 3.20
1599 4701 4.401925 TGGAGAGAGAGATGATATGCGAA 58.598 43.478 0.00 0.00 0.00 4.70
1647 4749 4.764679 TTCATGTCAATCAGTTTTCGGG 57.235 40.909 0.00 0.00 0.00 5.14
1663 4766 1.418342 CGGGTGTCTTAATCGCCGTG 61.418 60.000 0.00 0.00 36.45 4.94
1679 4782 5.353111 TCGCCGTGAAATTTATGTCTATCA 58.647 37.500 0.00 0.00 0.00 2.15
1681 4784 5.444122 GCCGTGAAATTTATGTCTATCAGC 58.556 41.667 0.00 0.00 0.00 4.26
1734 4837 1.601162 GCGTTCATCGGCCTATAACGA 60.601 52.381 24.47 8.08 44.11 3.85
1739 4842 4.430137 TCATCGGCCTATAACGACATAC 57.570 45.455 0.00 0.00 42.39 2.39
1867 4979 5.416639 TCATAGCTTTGAACACAAGATGCAT 59.583 36.000 0.00 0.00 0.00 3.96
1868 4980 6.598850 TCATAGCTTTGAACACAAGATGCATA 59.401 34.615 4.20 0.00 0.00 3.14
1869 4981 5.051891 AGCTTTGAACACAAGATGCATAC 57.948 39.130 0.00 0.00 0.00 2.39
1870 4982 3.848019 GCTTTGAACACAAGATGCATACG 59.152 43.478 0.00 0.00 0.00 3.06
1871 4983 4.406069 CTTTGAACACAAGATGCATACGG 58.594 43.478 0.00 0.00 0.00 4.02
1872 4984 3.326836 TGAACACAAGATGCATACGGA 57.673 42.857 0.00 0.00 0.00 4.69
1873 4985 3.261580 TGAACACAAGATGCATACGGAG 58.738 45.455 0.00 0.00 0.00 4.63
1905 5017 1.475403 GCAGAGAGGCAGGTAGTGTA 58.525 55.000 0.00 0.00 0.00 2.90
1906 5018 1.825474 GCAGAGAGGCAGGTAGTGTAA 59.175 52.381 0.00 0.00 0.00 2.41
1915 5027 6.841755 AGAGGCAGGTAGTGTAATTTCTCTAT 59.158 38.462 0.00 0.00 0.00 1.98
1948 5060 8.543774 AGAGAGGATACATGTACAAATGTCTTT 58.456 33.333 7.96 0.00 41.09 2.52
1952 5064 9.959721 AGGATACATGTACAAATGTCTTTTACT 57.040 29.630 7.96 0.00 41.09 2.24
1964 5076 9.838975 CAAATGTCTTTTACTACATATGCACAA 57.161 29.630 1.58 0.00 35.30 3.33
1969 5081 8.717821 GTCTTTTACTACATATGCACAAAGACA 58.282 33.333 24.43 6.39 44.21 3.41
1985 5097 5.070313 ACAAAGACAAAAATGCCATGTAGGT 59.930 36.000 0.00 0.00 40.61 3.08
2033 5145 2.677902 CGTGGCCAACTGATACATGAGT 60.678 50.000 7.24 0.00 0.00 3.41
2036 5150 4.572389 GTGGCCAACTGATACATGAGTAAG 59.428 45.833 7.24 0.00 33.13 2.34
2042 5156 8.090831 GCCAACTGATACATGAGTAAGATATCA 58.909 37.037 5.32 0.00 33.13 2.15
2053 5167 9.194271 CATGAGTAAGATATCATCACAAGACTG 57.806 37.037 5.32 0.00 33.91 3.51
2172 5286 0.688487 GTACCCACTGGCCACTGTAA 59.312 55.000 0.00 0.00 33.59 2.41
2173 5287 0.688487 TACCCACTGGCCACTGTAAC 59.312 55.000 0.00 0.00 33.59 2.50
2175 5289 0.179004 CCCACTGGCCACTGTAACAA 60.179 55.000 0.00 0.00 0.00 2.83
2260 5385 5.401531 TCCTAGAACAGTCACAACCATAC 57.598 43.478 0.00 0.00 0.00 2.39
2311 5436 8.700051 ACTAAACAGAGTAATCATGCTCATACT 58.300 33.333 0.00 1.29 40.41 2.12
2316 5456 8.700051 ACAGAGTAATCATGCTCATACTAGTTT 58.300 33.333 0.00 0.00 40.41 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.643784 ACTTCGACAAGGGAACGATAGTAT 59.356 41.667 0.00 0.00 40.99 2.12
1 2 4.012374 ACTTCGACAAGGGAACGATAGTA 58.988 43.478 0.00 0.00 40.99 1.82
2 3 2.824341 ACTTCGACAAGGGAACGATAGT 59.176 45.455 0.00 0.00 42.91 2.12
3 4 3.119602 TCACTTCGACAAGGGAACGATAG 60.120 47.826 0.00 0.00 39.25 2.08
4 5 2.821378 TCACTTCGACAAGGGAACGATA 59.179 45.455 0.00 0.00 39.25 2.92
5 6 1.616865 TCACTTCGACAAGGGAACGAT 59.383 47.619 0.00 0.00 39.25 3.73
6 7 1.034356 TCACTTCGACAAGGGAACGA 58.966 50.000 0.00 0.00 39.25 3.85
7 8 1.137513 GTCACTTCGACAAGGGAACG 58.862 55.000 0.00 0.00 44.03 3.95
37 38 6.538381 CCATAAACAGGTTTCTGCAAGTTTTT 59.462 34.615 0.00 0.00 44.59 1.94
38 39 6.048509 CCATAAACAGGTTTCTGCAAGTTTT 58.951 36.000 0.00 0.00 44.59 2.43
39 40 5.600696 CCATAAACAGGTTTCTGCAAGTTT 58.399 37.500 0.00 0.00 44.59 2.66
40 41 4.501400 GCCATAAACAGGTTTCTGCAAGTT 60.501 41.667 0.00 0.00 44.59 2.66
41 42 3.005791 GCCATAAACAGGTTTCTGCAAGT 59.994 43.478 0.00 0.00 44.59 3.16
42 43 3.578688 GCCATAAACAGGTTTCTGCAAG 58.421 45.455 0.00 0.00 44.59 4.01
43 44 2.030363 CGCCATAAACAGGTTTCTGCAA 60.030 45.455 0.00 0.00 44.59 4.08
44 45 1.539388 CGCCATAAACAGGTTTCTGCA 59.461 47.619 0.00 0.00 44.59 4.41
45 46 1.810151 TCGCCATAAACAGGTTTCTGC 59.190 47.619 0.00 2.58 44.59 4.26
46 47 3.074412 ACTCGCCATAAACAGGTTTCTG 58.926 45.455 0.00 2.27 46.10 3.02
47 48 3.418684 ACTCGCCATAAACAGGTTTCT 57.581 42.857 0.00 0.00 34.23 2.52
48 49 4.251268 AGTACTCGCCATAAACAGGTTTC 58.749 43.478 0.00 0.00 34.23 2.78
49 50 4.281898 AGTACTCGCCATAAACAGGTTT 57.718 40.909 2.66 2.66 36.63 3.27
50 51 3.975168 AGTACTCGCCATAAACAGGTT 57.025 42.857 0.00 0.00 0.00 3.50
51 52 3.259876 TGAAGTACTCGCCATAAACAGGT 59.740 43.478 0.00 0.00 0.00 4.00
52 53 3.857052 TGAAGTACTCGCCATAAACAGG 58.143 45.455 0.00 0.00 0.00 4.00
53 54 4.688879 TGTTGAAGTACTCGCCATAAACAG 59.311 41.667 0.00 0.00 0.00 3.16
54 55 4.633175 TGTTGAAGTACTCGCCATAAACA 58.367 39.130 0.00 0.00 0.00 2.83
55 56 4.435651 GCTGTTGAAGTACTCGCCATAAAC 60.436 45.833 0.00 0.00 0.00 2.01
56 57 3.682858 GCTGTTGAAGTACTCGCCATAAA 59.317 43.478 0.00 0.00 0.00 1.40
57 58 3.259064 GCTGTTGAAGTACTCGCCATAA 58.741 45.455 0.00 0.00 0.00 1.90
58 59 2.734175 CGCTGTTGAAGTACTCGCCATA 60.734 50.000 0.00 0.00 0.00 2.74
59 60 1.726853 GCTGTTGAAGTACTCGCCAT 58.273 50.000 0.00 0.00 0.00 4.40
60 61 0.666274 CGCTGTTGAAGTACTCGCCA 60.666 55.000 0.00 0.00 0.00 5.69
61 62 0.666577 ACGCTGTTGAAGTACTCGCC 60.667 55.000 0.00 0.00 0.00 5.54
62 63 1.912110 CTACGCTGTTGAAGTACTCGC 59.088 52.381 0.00 0.00 0.00 5.03
63 64 1.912110 GCTACGCTGTTGAAGTACTCG 59.088 52.381 0.00 0.00 0.00 4.18
64 65 2.917971 CTGCTACGCTGTTGAAGTACTC 59.082 50.000 0.00 0.00 0.00 2.59
65 66 2.557056 TCTGCTACGCTGTTGAAGTACT 59.443 45.455 0.00 0.00 0.00 2.73
66 67 2.662156 GTCTGCTACGCTGTTGAAGTAC 59.338 50.000 0.00 0.00 0.00 2.73
67 68 2.295070 TGTCTGCTACGCTGTTGAAGTA 59.705 45.455 0.00 0.00 0.00 2.24
68 69 1.068588 TGTCTGCTACGCTGTTGAAGT 59.931 47.619 0.00 0.00 0.00 3.01
69 70 1.723542 CTGTCTGCTACGCTGTTGAAG 59.276 52.381 0.00 0.00 0.00 3.02
70 71 1.068588 ACTGTCTGCTACGCTGTTGAA 59.931 47.619 0.00 0.00 0.00 2.69
71 72 0.673985 ACTGTCTGCTACGCTGTTGA 59.326 50.000 0.00 0.00 0.00 3.18
72 73 0.786581 CACTGTCTGCTACGCTGTTG 59.213 55.000 0.00 0.00 0.00 3.33
73 74 0.319900 CCACTGTCTGCTACGCTGTT 60.320 55.000 0.00 0.00 0.00 3.16
74 75 1.290324 CCACTGTCTGCTACGCTGT 59.710 57.895 0.00 0.00 0.00 4.40
75 76 2.097038 GCCACTGTCTGCTACGCTG 61.097 63.158 0.00 0.00 0.00 5.18
76 77 2.262915 GCCACTGTCTGCTACGCT 59.737 61.111 0.00 0.00 0.00 5.07
77 78 2.048222 TGCCACTGTCTGCTACGC 60.048 61.111 1.18 0.00 0.00 4.42
78 79 0.319900 AAGTGCCACTGTCTGCTACG 60.320 55.000 0.00 0.00 0.00 3.51
79 80 1.151668 CAAGTGCCACTGTCTGCTAC 58.848 55.000 0.00 0.00 0.00 3.58
80 81 0.035317 CCAAGTGCCACTGTCTGCTA 59.965 55.000 0.00 0.00 0.00 3.49
81 82 1.228063 CCAAGTGCCACTGTCTGCT 60.228 57.895 0.00 0.00 0.00 4.24
82 83 1.526917 ACCAAGTGCCACTGTCTGC 60.527 57.895 0.00 0.00 0.00 4.26
83 84 1.168407 CCACCAAGTGCCACTGTCTG 61.168 60.000 0.00 0.00 31.34 3.51
84 85 1.149174 CCACCAAGTGCCACTGTCT 59.851 57.895 0.00 0.00 31.34 3.41
85 86 0.465460 TTCCACCAAGTGCCACTGTC 60.465 55.000 0.00 0.00 31.34 3.51
86 87 0.033601 TTTCCACCAAGTGCCACTGT 60.034 50.000 0.00 0.00 31.34 3.55
87 88 1.331214 ATTTCCACCAAGTGCCACTG 58.669 50.000 0.00 0.00 31.34 3.66
88 89 1.688197 CAATTTCCACCAAGTGCCACT 59.312 47.619 0.00 0.00 31.34 4.00
89 90 1.686052 TCAATTTCCACCAAGTGCCAC 59.314 47.619 0.00 0.00 31.34 5.01
90 91 2.079170 TCAATTTCCACCAAGTGCCA 57.921 45.000 0.00 0.00 31.34 4.92
91 92 3.588955 GAATCAATTTCCACCAAGTGCC 58.411 45.455 0.00 0.00 31.34 5.01
102 103 6.393171 CAGAACCAGGAAAGGAATCAATTTC 58.607 40.000 0.00 2.68 35.19 2.17
103 104 5.279657 GCAGAACCAGGAAAGGAATCAATTT 60.280 40.000 0.00 0.00 0.00 1.82
104 105 4.221482 GCAGAACCAGGAAAGGAATCAATT 59.779 41.667 0.00 0.00 0.00 2.32
105 106 3.766051 GCAGAACCAGGAAAGGAATCAAT 59.234 43.478 0.00 0.00 0.00 2.57
106 107 3.157087 GCAGAACCAGGAAAGGAATCAA 58.843 45.455 0.00 0.00 0.00 2.57
107 108 2.376518 AGCAGAACCAGGAAAGGAATCA 59.623 45.455 0.00 0.00 0.00 2.57
108 109 3.078891 AGCAGAACCAGGAAAGGAATC 57.921 47.619 0.00 0.00 0.00 2.52
109 110 4.870021 ATAGCAGAACCAGGAAAGGAAT 57.130 40.909 0.00 0.00 0.00 3.01
110 111 4.289672 AGAATAGCAGAACCAGGAAAGGAA 59.710 41.667 0.00 0.00 0.00 3.36
111 112 3.846588 AGAATAGCAGAACCAGGAAAGGA 59.153 43.478 0.00 0.00 0.00 3.36
112 113 3.944015 CAGAATAGCAGAACCAGGAAAGG 59.056 47.826 0.00 0.00 0.00 3.11
113 114 4.633565 GTCAGAATAGCAGAACCAGGAAAG 59.366 45.833 0.00 0.00 0.00 2.62
114 115 4.287067 AGTCAGAATAGCAGAACCAGGAAA 59.713 41.667 0.00 0.00 0.00 3.13
115 116 3.840666 AGTCAGAATAGCAGAACCAGGAA 59.159 43.478 0.00 0.00 0.00 3.36
116 117 3.445008 AGTCAGAATAGCAGAACCAGGA 58.555 45.455 0.00 0.00 0.00 3.86
117 118 3.450457 AGAGTCAGAATAGCAGAACCAGG 59.550 47.826 0.00 0.00 0.00 4.45
118 119 4.081752 ACAGAGTCAGAATAGCAGAACCAG 60.082 45.833 0.00 0.00 0.00 4.00
119 120 3.834813 ACAGAGTCAGAATAGCAGAACCA 59.165 43.478 0.00 0.00 0.00 3.67
120 121 4.464069 ACAGAGTCAGAATAGCAGAACC 57.536 45.455 0.00 0.00 0.00 3.62
121 122 7.708051 TGTATACAGAGTCAGAATAGCAGAAC 58.292 38.462 0.08 0.00 0.00 3.01
122 123 7.881775 TGTATACAGAGTCAGAATAGCAGAA 57.118 36.000 0.08 0.00 0.00 3.02
123 124 7.503902 ACATGTATACAGAGTCAGAATAGCAGA 59.496 37.037 11.91 0.00 0.00 4.26
124 125 7.656412 ACATGTATACAGAGTCAGAATAGCAG 58.344 38.462 11.91 0.00 0.00 4.24
125 126 7.588497 ACATGTATACAGAGTCAGAATAGCA 57.412 36.000 11.91 0.00 0.00 3.49
129 130 9.755804 CACATAACATGTATACAGAGTCAGAAT 57.244 33.333 11.91 0.66 42.70 2.40
130 131 7.706607 GCACATAACATGTATACAGAGTCAGAA 59.293 37.037 11.91 1.22 42.70 3.02
131 132 7.203218 GCACATAACATGTATACAGAGTCAGA 58.797 38.462 11.91 3.13 42.70 3.27
132 133 6.142958 CGCACATAACATGTATACAGAGTCAG 59.857 42.308 11.91 8.29 42.70 3.51
133 134 5.977129 CGCACATAACATGTATACAGAGTCA 59.023 40.000 11.91 0.00 42.70 3.41
134 135 5.977725 ACGCACATAACATGTATACAGAGTC 59.022 40.000 11.91 0.00 42.70 3.36
135 136 5.902681 ACGCACATAACATGTATACAGAGT 58.097 37.500 11.91 9.54 42.70 3.24
136 137 9.620660 TTATACGCACATAACATGTATACAGAG 57.379 33.333 11.91 8.91 42.70 3.35
137 138 9.401873 GTTATACGCACATAACATGTATACAGA 57.598 33.333 11.91 0.00 42.70 3.41
138 139 9.187455 TGTTATACGCACATAACATGTATACAG 57.813 33.333 11.91 6.29 43.23 2.74
147 148 4.185394 CCTGGTGTTATACGCACATAACA 58.815 43.478 13.43 13.43 44.93 2.41
148 149 4.186159 ACCTGGTGTTATACGCACATAAC 58.814 43.478 0.00 9.46 40.37 1.89
149 150 4.475051 ACCTGGTGTTATACGCACATAA 57.525 40.909 0.00 0.00 38.51 1.90
150 151 4.475051 AACCTGGTGTTATACGCACATA 57.525 40.909 0.00 0.00 38.51 2.29
151 152 3.343941 AACCTGGTGTTATACGCACAT 57.656 42.857 0.00 0.00 38.51 3.21
152 153 2.843401 AACCTGGTGTTATACGCACA 57.157 45.000 0.00 0.00 38.51 4.57
153 154 2.931969 GGTAACCTGGTGTTATACGCAC 59.068 50.000 0.00 0.00 41.33 5.34
154 155 2.417107 CGGTAACCTGGTGTTATACGCA 60.417 50.000 0.00 0.00 41.33 5.24
155 156 2.159254 TCGGTAACCTGGTGTTATACGC 60.159 50.000 0.00 0.00 41.33 4.42
156 157 3.129287 ACTCGGTAACCTGGTGTTATACG 59.871 47.826 0.00 0.18 41.33 3.06
157 158 4.676546 GACTCGGTAACCTGGTGTTATAC 58.323 47.826 0.00 0.00 41.33 1.47
158 159 3.378112 CGACTCGGTAACCTGGTGTTATA 59.622 47.826 0.00 0.00 41.33 0.98
159 160 2.165030 CGACTCGGTAACCTGGTGTTAT 59.835 50.000 0.00 0.00 41.33 1.89
160 161 1.541147 CGACTCGGTAACCTGGTGTTA 59.459 52.381 0.00 0.00 38.42 2.41
161 162 0.316204 CGACTCGGTAACCTGGTGTT 59.684 55.000 0.00 0.00 41.11 3.32
162 163 1.530013 CCGACTCGGTAACCTGGTGT 61.530 60.000 9.51 0.00 42.73 4.16
163 164 1.214589 CCGACTCGGTAACCTGGTG 59.785 63.158 9.51 0.00 42.73 4.17
164 165 3.690745 CCGACTCGGTAACCTGGT 58.309 61.111 9.51 0.00 42.73 4.00
174 175 1.152943 TGGGATCCTCTCCGACTCG 60.153 63.158 12.58 0.00 46.01 4.18
175 176 0.106419 ACTGGGATCCTCTCCGACTC 60.106 60.000 12.58 0.00 46.01 3.36
176 177 0.396417 CACTGGGATCCTCTCCGACT 60.396 60.000 12.58 0.00 46.01 4.18
177 178 0.395862 TCACTGGGATCCTCTCCGAC 60.396 60.000 12.58 0.00 46.01 4.79
178 179 0.558220 ATCACTGGGATCCTCTCCGA 59.442 55.000 12.58 2.88 46.01 4.55
179 180 1.342819 GAATCACTGGGATCCTCTCCG 59.657 57.143 12.58 0.00 46.01 4.63
180 181 2.402564 TGAATCACTGGGATCCTCTCC 58.597 52.381 12.58 0.00 44.11 3.71
181 182 3.645212 TGATGAATCACTGGGATCCTCTC 59.355 47.826 12.58 0.00 34.28 3.20
182 183 3.647113 CTGATGAATCACTGGGATCCTCT 59.353 47.826 12.58 0.00 34.28 3.69
183 184 3.390639 ACTGATGAATCACTGGGATCCTC 59.609 47.826 12.58 2.25 34.28 3.71
184 185 3.391774 ACTGATGAATCACTGGGATCCT 58.608 45.455 12.58 0.00 34.28 3.24
185 186 3.853355 ACTGATGAATCACTGGGATCC 57.147 47.619 1.92 1.92 34.28 3.36
186 187 3.314635 GCAACTGATGAATCACTGGGATC 59.685 47.826 0.00 0.00 34.28 3.36
187 188 3.285484 GCAACTGATGAATCACTGGGAT 58.715 45.455 0.00 0.00 38.05 3.85
188 189 2.715046 GCAACTGATGAATCACTGGGA 58.285 47.619 0.00 0.00 32.50 4.37
189 190 1.399440 CGCAACTGATGAATCACTGGG 59.601 52.381 0.00 0.00 32.50 4.45
190 191 2.349590 TCGCAACTGATGAATCACTGG 58.650 47.619 0.00 0.00 32.50 4.00
191 192 4.408993 TTTCGCAACTGATGAATCACTG 57.591 40.909 0.00 0.00 32.50 3.66
192 193 5.633830 AATTTCGCAACTGATGAATCACT 57.366 34.783 0.00 0.00 32.50 3.41
193 194 7.697710 TGATAAATTTCGCAACTGATGAATCAC 59.302 33.333 0.00 0.00 32.50 3.06
194 195 7.760437 TGATAAATTTCGCAACTGATGAATCA 58.240 30.769 0.00 0.00 35.16 2.57
195 196 8.792831 ATGATAAATTTCGCAACTGATGAATC 57.207 30.769 0.00 0.00 0.00 2.52
196 197 9.590451 AAATGATAAATTTCGCAACTGATGAAT 57.410 25.926 0.00 0.00 0.00 2.57
197 198 8.984891 AAATGATAAATTTCGCAACTGATGAA 57.015 26.923 0.00 0.00 0.00 2.57
198 199 9.502145 GTAAATGATAAATTTCGCAACTGATGA 57.498 29.630 0.00 0.00 0.00 2.92
199 200 9.288124 TGTAAATGATAAATTTCGCAACTGATG 57.712 29.630 0.00 0.00 0.00 3.07
201 202 9.853555 AATGTAAATGATAAATTTCGCAACTGA 57.146 25.926 0.00 0.00 0.00 3.41
205 206 9.794685 TGCTAATGTAAATGATAAATTTCGCAA 57.205 25.926 0.00 0.00 0.00 4.85
206 207 9.794685 TTGCTAATGTAAATGATAAATTTCGCA 57.205 25.926 0.00 0.00 0.00 5.10
218 219 9.817365 CCGAAAGATATCTTGCTAATGTAAATG 57.183 33.333 18.61 0.37 36.12 2.32
219 220 8.507249 GCCGAAAGATATCTTGCTAATGTAAAT 58.493 33.333 18.61 0.00 36.12 1.40
220 221 7.715249 AGCCGAAAGATATCTTGCTAATGTAAA 59.285 33.333 21.21 0.00 36.12 2.01
221 222 7.217200 AGCCGAAAGATATCTTGCTAATGTAA 58.783 34.615 21.21 0.00 36.12 2.41
222 223 6.759272 AGCCGAAAGATATCTTGCTAATGTA 58.241 36.000 21.21 0.00 36.12 2.29
223 224 5.615289 AGCCGAAAGATATCTTGCTAATGT 58.385 37.500 21.21 5.36 36.12 2.71
224 225 6.369005 CAAGCCGAAAGATATCTTGCTAATG 58.631 40.000 22.27 16.28 33.39 1.90
225 226 5.471456 CCAAGCCGAAAGATATCTTGCTAAT 59.529 40.000 22.27 10.41 33.39 1.73
226 227 4.816385 CCAAGCCGAAAGATATCTTGCTAA 59.184 41.667 22.27 0.00 33.39 3.09
227 228 4.141711 ACCAAGCCGAAAGATATCTTGCTA 60.142 41.667 22.27 0.00 33.39 3.49
228 229 3.209410 CCAAGCCGAAAGATATCTTGCT 58.791 45.455 18.61 18.48 35.21 3.91
229 230 2.945668 ACCAAGCCGAAAGATATCTTGC 59.054 45.455 18.61 15.68 36.12 4.01
230 231 3.561725 GGACCAAGCCGAAAGATATCTTG 59.438 47.826 18.61 7.73 36.12 3.02
231 232 3.456277 AGGACCAAGCCGAAAGATATCTT 59.544 43.478 12.37 12.37 37.91 2.40
232 233 3.041946 AGGACCAAGCCGAAAGATATCT 58.958 45.455 0.00 0.00 0.00 1.98
233 234 3.477210 AGGACCAAGCCGAAAGATATC 57.523 47.619 0.00 0.00 0.00 1.63
234 235 3.933861 AAGGACCAAGCCGAAAGATAT 57.066 42.857 0.00 0.00 0.00 1.63
235 236 4.829872 TTAAGGACCAAGCCGAAAGATA 57.170 40.909 0.00 0.00 0.00 1.98
236 237 3.713826 TTAAGGACCAAGCCGAAAGAT 57.286 42.857 0.00 0.00 0.00 2.40
237 238 3.143728 GTTTAAGGACCAAGCCGAAAGA 58.856 45.455 0.00 0.00 0.00 2.52
238 239 2.882137 TGTTTAAGGACCAAGCCGAAAG 59.118 45.455 0.00 0.00 0.00 2.62
239 240 2.933573 TGTTTAAGGACCAAGCCGAAA 58.066 42.857 0.00 0.00 0.00 3.46
240 241 2.642154 TGTTTAAGGACCAAGCCGAA 57.358 45.000 0.00 0.00 0.00 4.30
241 242 2.619646 GTTTGTTTAAGGACCAAGCCGA 59.380 45.455 0.00 0.00 0.00 5.54
242 243 2.603652 CGTTTGTTTAAGGACCAAGCCG 60.604 50.000 0.00 0.00 0.00 5.52
243 244 2.619646 TCGTTTGTTTAAGGACCAAGCC 59.380 45.455 0.00 0.00 0.00 4.35
244 245 3.562557 TCTCGTTTGTTTAAGGACCAAGC 59.437 43.478 0.00 0.00 0.00 4.01
245 246 5.054477 TCTCTCGTTTGTTTAAGGACCAAG 58.946 41.667 0.00 0.00 0.00 3.61
246 247 5.026038 TCTCTCGTTTGTTTAAGGACCAA 57.974 39.130 0.00 0.00 0.00 3.67
247 248 4.675976 TCTCTCGTTTGTTTAAGGACCA 57.324 40.909 0.00 0.00 0.00 4.02
248 249 7.095270 TCTTATCTCTCGTTTGTTTAAGGACC 58.905 38.462 0.00 0.00 0.00 4.46
249 250 8.705048 ATCTTATCTCTCGTTTGTTTAAGGAC 57.295 34.615 0.00 0.00 0.00 3.85
250 251 8.750298 AGATCTTATCTCTCGTTTGTTTAAGGA 58.250 33.333 0.00 0.00 33.42 3.36
251 252 8.934507 AGATCTTATCTCTCGTTTGTTTAAGG 57.065 34.615 0.00 0.00 33.42 2.69
253 254 9.499585 CGTAGATCTTATCTCTCGTTTGTTTAA 57.500 33.333 0.00 0.00 40.76 1.52
254 255 8.671921 ACGTAGATCTTATCTCTCGTTTGTTTA 58.328 33.333 0.00 0.00 42.69 2.01
255 256 7.536855 ACGTAGATCTTATCTCTCGTTTGTTT 58.463 34.615 0.00 0.00 42.69 2.83
256 257 7.086230 ACGTAGATCTTATCTCTCGTTTGTT 57.914 36.000 0.00 0.00 42.69 2.83
257 258 6.680874 ACGTAGATCTTATCTCTCGTTTGT 57.319 37.500 0.00 0.00 42.69 2.83
261 262 7.086230 ACAAAACGTAGATCTTATCTCTCGT 57.914 36.000 0.00 11.51 45.04 4.18
262 263 7.972623 AACAAAACGTAGATCTTATCTCTCG 57.027 36.000 0.00 10.62 40.76 4.04
295 296 9.952030 TCTGTAGAAATGTCCAACAATACAATA 57.048 29.630 0.00 0.00 0.00 1.90
296 297 8.862325 TCTGTAGAAATGTCCAACAATACAAT 57.138 30.769 0.00 0.00 0.00 2.71
297 298 8.154203 TCTCTGTAGAAATGTCCAACAATACAA 58.846 33.333 0.00 0.00 0.00 2.41
298 299 7.676004 TCTCTGTAGAAATGTCCAACAATACA 58.324 34.615 0.00 0.00 0.00 2.29
299 300 8.723942 ATCTCTGTAGAAATGTCCAACAATAC 57.276 34.615 0.00 0.00 34.73 1.89
300 301 8.762645 AGATCTCTGTAGAAATGTCCAACAATA 58.237 33.333 0.00 0.00 34.73 1.90
301 302 7.628234 AGATCTCTGTAGAAATGTCCAACAAT 58.372 34.615 0.00 0.00 34.73 2.71
302 303 7.009179 AGATCTCTGTAGAAATGTCCAACAA 57.991 36.000 0.00 0.00 34.73 2.83
303 304 6.611613 AGATCTCTGTAGAAATGTCCAACA 57.388 37.500 0.00 0.00 34.73 3.33
304 305 6.314896 CCAAGATCTCTGTAGAAATGTCCAAC 59.685 42.308 0.00 0.00 34.73 3.77
305 306 6.409704 CCAAGATCTCTGTAGAAATGTCCAA 58.590 40.000 0.00 0.00 34.73 3.53
306 307 5.627735 GCCAAGATCTCTGTAGAAATGTCCA 60.628 44.000 0.00 0.00 34.73 4.02
307 308 4.813697 GCCAAGATCTCTGTAGAAATGTCC 59.186 45.833 0.00 0.00 34.73 4.02
308 309 4.813697 GGCCAAGATCTCTGTAGAAATGTC 59.186 45.833 0.00 0.00 34.73 3.06
309 310 4.472833 AGGCCAAGATCTCTGTAGAAATGT 59.527 41.667 5.01 0.00 34.73 2.71
310 311 4.815308 CAGGCCAAGATCTCTGTAGAAATG 59.185 45.833 5.01 0.00 34.73 2.32
311 312 4.472833 ACAGGCCAAGATCTCTGTAGAAAT 59.527 41.667 11.93 0.00 38.52 2.17
312 313 3.840666 ACAGGCCAAGATCTCTGTAGAAA 59.159 43.478 11.93 0.00 38.52 2.52
313 314 3.196469 CACAGGCCAAGATCTCTGTAGAA 59.804 47.826 12.92 0.00 38.27 2.10
314 315 2.762887 CACAGGCCAAGATCTCTGTAGA 59.237 50.000 12.92 0.00 38.27 2.59
315 316 2.741228 GCACAGGCCAAGATCTCTGTAG 60.741 54.545 12.92 9.55 38.27 2.74
316 317 1.208052 GCACAGGCCAAGATCTCTGTA 59.792 52.381 12.92 0.00 38.27 2.74
317 318 0.035630 GCACAGGCCAAGATCTCTGT 60.036 55.000 5.01 8.58 40.62 3.41
318 319 0.035725 TGCACAGGCCAAGATCTCTG 60.036 55.000 5.01 7.44 40.13 3.35
319 320 0.694771 TTGCACAGGCCAAGATCTCT 59.305 50.000 5.01 0.00 40.13 3.10
320 321 1.093159 CTTGCACAGGCCAAGATCTC 58.907 55.000 5.01 0.00 40.13 2.75
321 322 0.694771 TCTTGCACAGGCCAAGATCT 59.305 50.000 5.01 0.00 40.13 2.75
322 323 0.807496 GTCTTGCACAGGCCAAGATC 59.193 55.000 5.01 0.00 38.49 2.75
323 324 0.111061 TGTCTTGCACAGGCCAAGAT 59.889 50.000 5.01 0.00 38.49 2.40
324 325 0.111061 ATGTCTTGCACAGGCCAAGA 59.889 50.000 5.01 1.09 38.85 3.02
325 326 0.242825 CATGTCTTGCACAGGCCAAG 59.757 55.000 5.01 0.00 38.85 3.61
326 327 1.180456 CCATGTCTTGCACAGGCCAA 61.180 55.000 5.01 0.00 38.85 4.52
327 328 1.604308 CCATGTCTTGCACAGGCCA 60.604 57.895 5.01 0.00 38.85 5.36
328 329 2.998279 GCCATGTCTTGCACAGGCC 61.998 63.158 0.00 0.00 40.64 5.19
329 330 2.209064 CTGCCATGTCTTGCACAGGC 62.209 60.000 0.00 0.00 43.94 4.85
330 331 1.592400 CCTGCCATGTCTTGCACAGG 61.592 60.000 1.78 1.78 40.00 4.00
331 332 0.607217 TCCTGCCATGTCTTGCACAG 60.607 55.000 0.00 0.00 38.85 3.66
332 333 0.038599 ATCCTGCCATGTCTTGCACA 59.961 50.000 0.00 0.00 40.18 4.57
333 334 0.454600 CATCCTGCCATGTCTTGCAC 59.545 55.000 0.00 0.00 33.17 4.57
334 335 0.681887 CCATCCTGCCATGTCTTGCA 60.682 55.000 0.00 0.00 35.86 4.08
335 336 1.389609 CCCATCCTGCCATGTCTTGC 61.390 60.000 0.00 0.00 0.00 4.01
336 337 0.033796 ACCCATCCTGCCATGTCTTG 60.034 55.000 0.00 0.00 0.00 3.02
337 338 0.033796 CACCCATCCTGCCATGTCTT 60.034 55.000 0.00 0.00 0.00 3.01
338 339 1.611419 CACCCATCCTGCCATGTCT 59.389 57.895 0.00 0.00 0.00 3.41
339 340 1.454479 CCACCCATCCTGCCATGTC 60.454 63.158 0.00 0.00 0.00 3.06
340 341 2.240918 ACCACCCATCCTGCCATGT 61.241 57.895 0.00 0.00 0.00 3.21
341 342 1.755395 CACCACCCATCCTGCCATG 60.755 63.158 0.00 0.00 0.00 3.66
342 343 1.930133 TCACCACCCATCCTGCCAT 60.930 57.895 0.00 0.00 0.00 4.40
343 344 2.531428 TCACCACCCATCCTGCCA 60.531 61.111 0.00 0.00 0.00 4.92
344 345 2.044946 GTCACCACCCATCCTGCC 60.045 66.667 0.00 0.00 0.00 4.85
345 346 1.078143 GAGTCACCACCCATCCTGC 60.078 63.158 0.00 0.00 0.00 4.85
346 347 0.539051 GAGAGTCACCACCCATCCTG 59.461 60.000 0.00 0.00 0.00 3.86
347 348 0.618968 GGAGAGTCACCACCCATCCT 60.619 60.000 1.15 0.00 0.00 3.24
348 349 0.909610 TGGAGAGTCACCACCCATCC 60.910 60.000 5.03 0.00 32.03 3.51
349 350 1.207791 ATGGAGAGTCACCACCCATC 58.792 55.000 11.84 0.00 40.36 3.51
350 351 1.673767 AATGGAGAGTCACCACCCAT 58.326 50.000 11.84 3.67 40.36 4.00
351 352 2.187958 CTAATGGAGAGTCACCACCCA 58.812 52.381 11.84 1.39 40.36 4.51
352 353 2.168728 GTCTAATGGAGAGTCACCACCC 59.831 54.545 11.84 0.00 40.36 4.61
353 354 2.832129 TGTCTAATGGAGAGTCACCACC 59.168 50.000 11.84 0.37 40.36 4.61
354 355 3.511934 AGTGTCTAATGGAGAGTCACCAC 59.488 47.826 11.84 0.00 40.36 4.16
355 356 3.764434 GAGTGTCTAATGGAGAGTCACCA 59.236 47.826 11.99 11.99 37.54 4.17
356 357 3.181495 CGAGTGTCTAATGGAGAGTCACC 60.181 52.174 0.00 0.00 37.48 4.02
357 358 3.690139 TCGAGTGTCTAATGGAGAGTCAC 59.310 47.826 0.08 0.00 37.48 3.67
358 359 3.951663 TCGAGTGTCTAATGGAGAGTCA 58.048 45.455 0.08 0.00 37.48 3.41
359 360 4.319190 CGATCGAGTGTCTAATGGAGAGTC 60.319 50.000 10.26 0.00 33.72 3.36
360 361 3.562141 CGATCGAGTGTCTAATGGAGAGT 59.438 47.826 10.26 0.00 33.72 3.24
361 362 3.810386 TCGATCGAGTGTCTAATGGAGAG 59.190 47.826 15.15 0.00 33.72 3.20
362 363 3.805207 TCGATCGAGTGTCTAATGGAGA 58.195 45.455 15.15 0.00 0.00 3.71
363 364 4.140518 CTCGATCGAGTGTCTAATGGAG 57.859 50.000 32.23 7.31 37.47 3.86
375 376 2.010497 TGGACTTCTCACTCGATCGAG 58.990 52.381 36.95 36.95 46.91 4.04
376 377 2.109425 TGGACTTCTCACTCGATCGA 57.891 50.000 18.32 18.32 0.00 3.59
377 378 4.283678 GTTATGGACTTCTCACTCGATCG 58.716 47.826 9.36 9.36 0.00 3.69
378 379 4.612943 GGTTATGGACTTCTCACTCGATC 58.387 47.826 0.00 0.00 0.00 3.69
379 380 3.066900 CGGTTATGGACTTCTCACTCGAT 59.933 47.826 0.00 0.00 0.00 3.59
380 381 2.422479 CGGTTATGGACTTCTCACTCGA 59.578 50.000 0.00 0.00 0.00 4.04
381 382 2.798680 CGGTTATGGACTTCTCACTCG 58.201 52.381 0.00 0.00 0.00 4.18
382 383 2.541556 GCGGTTATGGACTTCTCACTC 58.458 52.381 0.00 0.00 0.00 3.51
437 438 4.501571 GCTGGTGTGTAGTCGATTATGGAT 60.502 45.833 0.00 0.00 0.00 3.41
477 478 1.726853 CTACTTTGTTCTGGAGGCCG 58.273 55.000 0.00 0.00 0.00 6.13
489 490 6.584942 TCGAATACTGTTGTACTGCTACTTTG 59.415 38.462 0.00 0.00 0.00 2.77
494 495 5.892160 AGTCGAATACTGTTGTACTGCTA 57.108 39.130 0.00 0.00 36.93 3.49
514 515 0.324943 ACGCTCAGTGGCCAAATAGT 59.675 50.000 7.24 0.00 0.00 2.12
516 517 0.323302 TGACGCTCAGTGGCCAAATA 59.677 50.000 7.24 0.00 0.00 1.40
517 518 0.322816 ATGACGCTCAGTGGCCAAAT 60.323 50.000 7.24 0.00 0.00 2.32
518 519 0.323302 TATGACGCTCAGTGGCCAAA 59.677 50.000 7.24 0.00 0.00 3.28
519 520 0.541392 ATATGACGCTCAGTGGCCAA 59.459 50.000 7.24 0.00 0.00 4.52
520 521 0.541392 AATATGACGCTCAGTGGCCA 59.459 50.000 0.00 0.00 0.00 5.36
521 522 1.668419 AAATATGACGCTCAGTGGCC 58.332 50.000 0.00 0.00 0.00 5.36
522 523 4.310769 AGATAAATATGACGCTCAGTGGC 58.689 43.478 0.00 0.00 0.00 5.01
523 524 5.985530 TGAAGATAAATATGACGCTCAGTGG 59.014 40.000 0.00 0.00 0.00 4.00
524 525 6.920210 TCTGAAGATAAATATGACGCTCAGTG 59.080 38.462 0.00 0.00 0.00 3.66
525 526 7.043961 TCTGAAGATAAATATGACGCTCAGT 57.956 36.000 0.00 0.00 0.00 3.41
526 527 7.936950 TTCTGAAGATAAATATGACGCTCAG 57.063 36.000 0.00 0.00 0.00 3.35
527 528 8.893219 ATTTCTGAAGATAAATATGACGCTCA 57.107 30.769 0.00 0.00 0.00 4.26
528 529 9.202273 AGATTTCTGAAGATAAATATGACGCTC 57.798 33.333 0.00 0.00 0.00 5.03
529 530 9.202273 GAGATTTCTGAAGATAAATATGACGCT 57.798 33.333 0.00 0.00 0.00 5.07
530 531 8.439286 GGAGATTTCTGAAGATAAATATGACGC 58.561 37.037 0.00 0.00 0.00 5.19
531 532 9.481340 TGGAGATTTCTGAAGATAAATATGACG 57.519 33.333 0.00 0.00 0.00 4.35
561 569 7.334671 TGGTTAGCAAAAACGGAAAAATCTTTT 59.665 29.630 0.00 0.00 0.00 2.27
563 571 6.256975 GTGGTTAGCAAAAACGGAAAAATCTT 59.743 34.615 0.00 0.00 0.00 2.40
564 572 5.751509 GTGGTTAGCAAAAACGGAAAAATCT 59.248 36.000 0.00 0.00 0.00 2.40
574 582 7.542824 TCAAACTACTTTGTGGTTAGCAAAAAC 59.457 33.333 0.00 0.00 36.27 2.43
581 589 4.319261 GGCGTCAAACTACTTTGTGGTTAG 60.319 45.833 0.20 0.00 36.27 2.34
613 622 1.047034 GCCCTACCACCTACGTCCAT 61.047 60.000 0.00 0.00 0.00 3.41
666 712 1.209127 CCGGCGAATTCAACACCAC 59.791 57.895 9.30 0.00 0.00 4.16
738 2629 1.002274 GGGCAGAGAGAGGGGAGAA 59.998 63.158 0.00 0.00 0.00 2.87
797 2688 3.187700 GGACGTACGCATCTTCTTCATT 58.812 45.455 16.72 0.00 0.00 2.57
916 3964 0.746923 GCGGTAGGCAAAACCCTAGG 60.747 60.000 0.06 0.06 42.87 3.02
1037 4092 5.422331 TCGAAGTAGTTGATGAAATCCTCCT 59.578 40.000 0.00 0.00 44.73 3.69
1192 4247 3.399181 AAGCTGCGAATCGGGGGA 61.399 61.111 4.35 0.00 0.00 4.81
1277 4332 2.368878 GGCCTCCTCCTTCCCCAT 60.369 66.667 0.00 0.00 0.00 4.00
1321 4376 0.179000 AGCGAAGGCAAGAATCCGAT 59.821 50.000 0.00 0.00 43.41 4.18
1368 4423 2.363680 CCTGATGCAGAGGTACAGTAGG 59.636 54.545 6.42 0.00 32.44 3.18
1389 4444 7.550196 TCCACTTAAACTTTACCGATCCATAAC 59.450 37.037 0.00 0.00 0.00 1.89
1429 4485 2.489329 ACTCGCCATTGAAATCACCAAG 59.511 45.455 0.00 0.00 0.00 3.61
1463 4519 1.541147 ACATCACCATCGCCAAAACAG 59.459 47.619 0.00 0.00 0.00 3.16
1472 4528 5.250235 ACTGTCTACTTACATCACCATCG 57.750 43.478 0.00 0.00 0.00 3.84
1477 4533 5.512082 CGTGCTTACTGTCTACTTACATCAC 59.488 44.000 0.00 0.00 0.00 3.06
1554 4617 8.316946 TCCAATGGATTAACATGTGCAAAATTA 58.683 29.630 0.00 0.00 0.00 1.40
1555 4618 7.166851 TCCAATGGATTAACATGTGCAAAATT 58.833 30.769 0.00 0.00 0.00 1.82
1556 4619 6.709281 TCCAATGGATTAACATGTGCAAAAT 58.291 32.000 0.00 0.00 0.00 1.82
1647 4749 4.336532 AATTTCACGGCGATTAAGACAC 57.663 40.909 16.62 0.00 0.00 3.67
1663 4766 4.515191 TGGCCGCTGATAGACATAAATTTC 59.485 41.667 0.00 0.00 0.00 2.17
1679 4782 1.898574 CAAAACAGGACTGGCCGCT 60.899 57.895 0.00 0.00 43.43 5.52
1681 4784 0.310854 GAACAAAACAGGACTGGCCG 59.689 55.000 0.00 0.00 43.43 6.13
1725 4828 1.891150 AGGGGCGTATGTCGTTATAGG 59.109 52.381 0.00 0.00 42.13 2.57
1734 4837 3.454812 ACAAAGATAGAAGGGGCGTATGT 59.545 43.478 0.00 0.00 0.00 2.29
1739 4842 4.332819 CACTAAACAAAGATAGAAGGGGCG 59.667 45.833 0.00 0.00 0.00 6.13
1867 4979 4.467082 TCTGCCTTACCAAAATACTCCGTA 59.533 41.667 0.00 0.00 0.00 4.02
1868 4980 3.262405 TCTGCCTTACCAAAATACTCCGT 59.738 43.478 0.00 0.00 0.00 4.69
1869 4981 3.869065 TCTGCCTTACCAAAATACTCCG 58.131 45.455 0.00 0.00 0.00 4.63
1870 4982 5.099042 TCTCTGCCTTACCAAAATACTCC 57.901 43.478 0.00 0.00 0.00 3.85
1871 4983 5.119694 CCTCTCTGCCTTACCAAAATACTC 58.880 45.833 0.00 0.00 0.00 2.59
1872 4984 4.626529 GCCTCTCTGCCTTACCAAAATACT 60.627 45.833 0.00 0.00 0.00 2.12
1873 4985 3.628032 GCCTCTCTGCCTTACCAAAATAC 59.372 47.826 0.00 0.00 0.00 1.89
1950 5062 7.329226 GCATTTTTGTCTTTGTGCATATGTAGT 59.671 33.333 4.29 0.00 33.09 2.73
1951 5063 7.201461 GGCATTTTTGTCTTTGTGCATATGTAG 60.201 37.037 4.29 0.00 34.45 2.74
1952 5064 6.589523 GGCATTTTTGTCTTTGTGCATATGTA 59.410 34.615 4.29 0.00 34.45 2.29
1953 5065 5.409214 GGCATTTTTGTCTTTGTGCATATGT 59.591 36.000 4.29 0.00 34.45 2.29
1960 5072 5.406175 CCTACATGGCATTTTTGTCTTTGTG 59.594 40.000 0.00 0.00 0.00 3.33
1964 5076 5.079643 AGACCTACATGGCATTTTTGTCTT 58.920 37.500 0.00 0.00 40.22 3.01
1969 5081 4.839121 TCGTAGACCTACATGGCATTTTT 58.161 39.130 0.00 0.00 40.22 1.94
1972 5084 4.100963 TGATTCGTAGACCTACATGGCATT 59.899 41.667 0.00 0.00 40.22 3.56
1974 5086 3.028130 TGATTCGTAGACCTACATGGCA 58.972 45.455 7.81 0.00 40.22 4.92
1985 5097 4.471904 AGGTTGATGCTTGATTCGTAGA 57.528 40.909 0.00 0.00 0.00 2.59
2311 5436 3.067040 GTGCGGTTTTGGGAGAAAAACTA 59.933 43.478 11.15 0.00 45.32 2.24
2316 5456 1.407258 CAAGTGCGGTTTTGGGAGAAA 59.593 47.619 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.