Multiple sequence alignment - TraesCS5A01G303400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G303400 chr5A 100.000 3686 0 0 1 3686 512598992 512602677 0.000000e+00 6807.0
1 TraesCS5A01G303400 chr5A 87.476 1581 108 34 1363 2889 512458973 512460517 0.000000e+00 1740.0
2 TraesCS5A01G303400 chr5A 94.643 56 2 1 951 1006 512458536 512458590 6.560000e-13 86.1
3 TraesCS5A01G303400 chr5D 91.423 2460 101 31 1280 3684 407021289 407018885 0.000000e+00 3273.0
4 TraesCS5A01G303400 chr5D 86.576 812 78 13 2092 2892 407107032 407106241 0.000000e+00 867.0
5 TraesCS5A01G303400 chr5D 88.889 693 32 9 617 1281 407022176 407021501 0.000000e+00 811.0
6 TraesCS5A01G303400 chr5D 89.634 328 21 7 957 1281 407108681 407108364 4.430000e-109 405.0
7 TraesCS5A01G303400 chr5D 85.404 322 35 5 1342 1662 407108072 407107762 1.280000e-84 324.0
8 TraesCS5A01G303400 chr5D 86.424 302 24 3 1798 2082 407107410 407107109 7.680000e-82 315.0
9 TraesCS5A01G303400 chr5B 87.452 1554 106 34 1363 2869 488015162 488016673 0.000000e+00 1707.0
10 TraesCS5A01G303400 chr5B 93.670 1011 58 6 1789 2797 488112363 488113369 0.000000e+00 1507.0
11 TraesCS5A01G303400 chr5B 89.079 1227 62 23 617 1789 488111126 488112334 0.000000e+00 1458.0
12 TraesCS5A01G303400 chr5B 88.427 337 23 9 951 1281 488014557 488014883 3.450000e-105 392.0
13 TraesCS5A01G303400 chr2D 91.948 621 48 2 1 619 533926921 533926301 0.000000e+00 869.0
14 TraesCS5A01G303400 chr2D 80.441 680 108 16 2081 2754 28896075 28896735 2.560000e-136 496.0
15 TraesCS5A01G303400 chr2D 86.400 250 34 0 989 1238 28895003 28895252 1.300000e-69 274.0
16 TraesCS5A01G303400 chr2D 83.594 256 32 5 993 1241 28827616 28827868 7.960000e-57 231.0
17 TraesCS5A01G303400 chr2D 88.649 185 21 0 1810 1994 28895749 28895933 3.700000e-55 226.0
18 TraesCS5A01G303400 chr3D 90.016 621 59 3 1 619 278518884 278518265 0.000000e+00 800.0
19 TraesCS5A01G303400 chr3D 90.625 64 4 2 1130 1193 511326614 511326553 2.360000e-12 84.2
20 TraesCS5A01G303400 chr4D 85.507 621 87 3 1 619 297837092 297837711 0.000000e+00 645.0
21 TraesCS5A01G303400 chr2A 82.324 611 86 13 2081 2687 30858336 30858928 9.130000e-141 510.0
22 TraesCS5A01G303400 chr2A 85.039 254 31 4 989 1241 30764399 30764646 6.110000e-63 252.0
23 TraesCS5A01G303400 chr3B 81.250 624 108 9 1 619 790338286 790338905 2.560000e-136 496.0
24 TraesCS5A01G303400 chr2B 80.441 680 104 18 2081 2754 46672921 46673577 3.310000e-135 492.0
25 TraesCS5A01G303400 chr2B 79.421 622 123 5 1 619 751275609 751274990 5.650000e-118 435.0
26 TraesCS5A01G303400 chr2B 84.252 254 36 2 989 1241 46504356 46504606 1.020000e-60 244.0
27 TraesCS5A01G303400 chr2B 89.730 185 19 0 1810 1994 46672594 46672778 1.710000e-58 237.0
28 TraesCS5A01G303400 chr6B 89.203 389 40 2 1 388 188565075 188564688 5.530000e-133 484.0
29 TraesCS5A01G303400 chr6B 92.437 238 16 2 383 619 188506880 188506644 4.560000e-89 339.0
30 TraesCS5A01G303400 chrUn 80.118 679 107 17 2081 2754 359864352 359865007 7.160000e-132 481.0
31 TraesCS5A01G303400 chrUn 89.189 185 20 0 1810 1994 17184041 17184225 7.960000e-57 231.0
32 TraesCS5A01G303400 chrUn 86.802 197 26 0 1810 2006 423412808 423412612 1.720000e-53 220.0
33 TraesCS5A01G303400 chr6D 80.669 269 45 7 2 266 332793113 332792848 6.240000e-48 202.0
34 TraesCS5A01G303400 chr4B 76.866 268 55 6 2 266 4158766 4159029 1.070000e-30 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G303400 chr5A 512598992 512602677 3685 False 6807.00 6807 100.000000 1 3686 1 chr5A.!!$F1 3685
1 TraesCS5A01G303400 chr5A 512458536 512460517 1981 False 913.05 1740 91.059500 951 2889 2 chr5A.!!$F2 1938
2 TraesCS5A01G303400 chr5D 407018885 407022176 3291 True 2042.00 3273 90.156000 617 3684 2 chr5D.!!$R1 3067
3 TraesCS5A01G303400 chr5D 407106241 407108681 2440 True 477.75 867 87.009500 957 2892 4 chr5D.!!$R2 1935
4 TraesCS5A01G303400 chr5B 488111126 488113369 2243 False 1482.50 1507 91.374500 617 2797 2 chr5B.!!$F2 2180
5 TraesCS5A01G303400 chr5B 488014557 488016673 2116 False 1049.50 1707 87.939500 951 2869 2 chr5B.!!$F1 1918
6 TraesCS5A01G303400 chr2D 533926301 533926921 620 True 869.00 869 91.948000 1 619 1 chr2D.!!$R1 618
7 TraesCS5A01G303400 chr2D 28895003 28896735 1732 False 332.00 496 85.163333 989 2754 3 chr2D.!!$F2 1765
8 TraesCS5A01G303400 chr3D 278518265 278518884 619 True 800.00 800 90.016000 1 619 1 chr3D.!!$R1 618
9 TraesCS5A01G303400 chr4D 297837092 297837711 619 False 645.00 645 85.507000 1 619 1 chr4D.!!$F1 618
10 TraesCS5A01G303400 chr2A 30858336 30858928 592 False 510.00 510 82.324000 2081 2687 1 chr2A.!!$F2 606
11 TraesCS5A01G303400 chr3B 790338286 790338905 619 False 496.00 496 81.250000 1 619 1 chr3B.!!$F1 618
12 TraesCS5A01G303400 chr2B 751274990 751275609 619 True 435.00 435 79.421000 1 619 1 chr2B.!!$R1 618
13 TraesCS5A01G303400 chr2B 46672594 46673577 983 False 364.50 492 85.085500 1810 2754 2 chr2B.!!$F2 944
14 TraesCS5A01G303400 chrUn 359864352 359865007 655 False 481.00 481 80.118000 2081 2754 1 chrUn.!!$F2 673

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
610 612 0.035439 TCCTCAATGGCTCGGGTTTC 60.035 55.0 0.00 0.00 35.26 2.78 F
619 621 0.250338 GCTCGGGTTTCCAGTGAACT 60.250 55.0 0.00 0.00 0.00 3.01 F
869 896 0.389817 CGCTGACAAATCTCCGGTGA 60.390 55.0 8.96 8.96 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2176 2889 0.249868 CTCTTCAGTGTGGCGTCCAA 60.250 55.000 0.0 0.0 34.18 3.53 R
2262 2982 4.391830 CGCAGAACTCTTTATTAACTGGCA 59.608 41.667 0.0 0.0 0.00 4.92 R
2840 3642 0.984995 GCTTCCTGGTTCACCTACCT 59.015 55.000 0.0 0.0 39.04 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 5.180117 CGGTCTGAATTGTGAAATCAACTCT 59.820 40.000 0.00 0.00 0.00 3.24
238 239 2.590092 CGGGAGCCTTTGTAGGGG 59.410 66.667 0.00 0.00 42.25 4.79
255 257 3.106827 AGGGGCCATTTGGAATAAACTG 58.893 45.455 4.39 0.00 37.39 3.16
266 268 4.921547 TGGAATAAACTGTCTCGATCTCG 58.078 43.478 0.00 0.00 41.45 4.04
271 273 4.442375 AAACTGTCTCGATCTCGTCATT 57.558 40.909 0.00 0.00 40.80 2.57
349 351 1.281656 GTAACAGCACGTTGGCACC 59.718 57.895 0.36 0.00 38.63 5.01
350 352 2.248135 TAACAGCACGTTGGCACCG 61.248 57.895 1.86 1.86 38.63 4.94
371 373 2.677971 CGACCCATCGGACATCAAC 58.322 57.895 0.00 0.00 44.99 3.18
372 374 0.108377 CGACCCATCGGACATCAACA 60.108 55.000 0.00 0.00 44.99 3.33
373 375 1.656652 GACCCATCGGACATCAACAG 58.343 55.000 0.00 0.00 0.00 3.16
374 376 0.984230 ACCCATCGGACATCAACAGT 59.016 50.000 0.00 0.00 0.00 3.55
375 377 1.066143 ACCCATCGGACATCAACAGTC 60.066 52.381 0.00 0.00 35.29 3.51
376 378 1.280982 CCATCGGACATCAACAGTCG 58.719 55.000 0.00 0.00 36.87 4.18
377 379 1.404181 CCATCGGACATCAACAGTCGT 60.404 52.381 0.00 0.00 36.87 4.34
378 380 2.337583 CATCGGACATCAACAGTCGTT 58.662 47.619 0.00 0.00 36.87 3.85
379 381 2.060326 TCGGACATCAACAGTCGTTC 57.940 50.000 0.00 0.00 36.87 3.95
380 382 0.708370 CGGACATCAACAGTCGTTCG 59.292 55.000 0.00 0.00 36.87 3.95
381 383 1.779569 GGACATCAACAGTCGTTCGT 58.220 50.000 0.00 0.00 36.87 3.85
382 384 2.666344 CGGACATCAACAGTCGTTCGTA 60.666 50.000 0.00 0.00 36.87 3.43
383 385 2.915463 GGACATCAACAGTCGTTCGTAG 59.085 50.000 0.00 0.00 36.87 3.51
384 386 3.365666 GGACATCAACAGTCGTTCGTAGA 60.366 47.826 0.00 0.00 36.87 2.59
385 387 4.224433 GACATCAACAGTCGTTCGTAGAA 58.776 43.478 0.00 0.00 45.90 2.10
386 388 4.613944 ACATCAACAGTCGTTCGTAGAAA 58.386 39.130 0.00 0.00 45.90 2.52
387 389 4.680110 ACATCAACAGTCGTTCGTAGAAAG 59.320 41.667 0.00 0.00 45.90 2.62
388 390 4.556942 TCAACAGTCGTTCGTAGAAAGA 57.443 40.909 0.00 0.00 45.90 2.52
389 391 4.534168 TCAACAGTCGTTCGTAGAAAGAG 58.466 43.478 0.00 0.00 45.90 2.85
390 392 3.555917 ACAGTCGTTCGTAGAAAGAGG 57.444 47.619 0.00 0.00 45.90 3.69
391 393 2.251893 CAGTCGTTCGTAGAAAGAGGC 58.748 52.381 0.00 0.00 45.90 4.70
392 394 1.884579 AGTCGTTCGTAGAAAGAGGCA 59.115 47.619 0.00 0.00 45.90 4.75
393 395 2.095161 AGTCGTTCGTAGAAAGAGGCAG 60.095 50.000 0.00 0.00 45.90 4.85
394 396 0.992802 CGTTCGTAGAAAGAGGCAGC 59.007 55.000 0.00 0.00 45.90 5.25
395 397 1.668919 CGTTCGTAGAAAGAGGCAGCA 60.669 52.381 0.00 0.00 45.90 4.41
396 398 2.413837 GTTCGTAGAAAGAGGCAGCAA 58.586 47.619 0.00 0.00 45.90 3.91
397 399 2.370281 TCGTAGAAAGAGGCAGCAAG 57.630 50.000 0.00 0.00 0.00 4.01
398 400 1.618837 TCGTAGAAAGAGGCAGCAAGT 59.381 47.619 0.00 0.00 0.00 3.16
399 401 2.037251 TCGTAGAAAGAGGCAGCAAGTT 59.963 45.455 0.00 0.00 0.00 2.66
400 402 2.413453 CGTAGAAAGAGGCAGCAAGTTC 59.587 50.000 0.00 0.00 0.00 3.01
401 403 2.947127 AGAAAGAGGCAGCAAGTTCT 57.053 45.000 0.00 0.00 0.00 3.01
402 404 2.777094 AGAAAGAGGCAGCAAGTTCTC 58.223 47.619 0.00 0.00 0.00 2.87
403 405 2.371510 AGAAAGAGGCAGCAAGTTCTCT 59.628 45.455 0.00 0.00 38.12 3.10
404 406 2.470983 AAGAGGCAGCAAGTTCTCTC 57.529 50.000 0.00 0.00 35.76 3.20
405 407 1.346062 AGAGGCAGCAAGTTCTCTCA 58.654 50.000 0.00 0.00 31.67 3.27
406 408 1.907936 AGAGGCAGCAAGTTCTCTCAT 59.092 47.619 0.00 0.00 31.67 2.90
407 409 2.008329 GAGGCAGCAAGTTCTCTCATG 58.992 52.381 0.00 0.00 0.00 3.07
408 410 1.350351 AGGCAGCAAGTTCTCTCATGT 59.650 47.619 0.00 0.00 0.00 3.21
409 411 1.736681 GGCAGCAAGTTCTCTCATGTC 59.263 52.381 0.00 0.00 0.00 3.06
410 412 1.736681 GCAGCAAGTTCTCTCATGTCC 59.263 52.381 0.00 0.00 0.00 4.02
411 413 2.614987 GCAGCAAGTTCTCTCATGTCCT 60.615 50.000 0.00 0.00 0.00 3.85
412 414 3.260740 CAGCAAGTTCTCTCATGTCCTC 58.739 50.000 0.00 0.00 0.00 3.71
413 415 2.902486 AGCAAGTTCTCTCATGTCCTCA 59.098 45.455 0.00 0.00 0.00 3.86
414 416 3.518705 AGCAAGTTCTCTCATGTCCTCAT 59.481 43.478 0.00 0.00 34.21 2.90
415 417 3.870419 GCAAGTTCTCTCATGTCCTCATC 59.130 47.826 0.00 0.00 31.15 2.92
416 418 4.440880 CAAGTTCTCTCATGTCCTCATCC 58.559 47.826 0.00 0.00 31.15 3.51
417 419 3.717576 AGTTCTCTCATGTCCTCATCCA 58.282 45.455 0.00 0.00 31.15 3.41
418 420 3.450457 AGTTCTCTCATGTCCTCATCCAC 59.550 47.826 0.00 0.00 31.15 4.02
419 421 2.392662 TCTCTCATGTCCTCATCCACC 58.607 52.381 0.00 0.00 31.15 4.61
420 422 1.068281 CTCTCATGTCCTCATCCACCG 59.932 57.143 0.00 0.00 31.15 4.94
421 423 0.826715 CTCATGTCCTCATCCACCGT 59.173 55.000 0.00 0.00 31.15 4.83
422 424 0.536724 TCATGTCCTCATCCACCGTG 59.463 55.000 0.00 0.00 31.15 4.94
423 425 1.091771 CATGTCCTCATCCACCGTGC 61.092 60.000 0.00 0.00 31.15 5.34
424 426 1.552799 ATGTCCTCATCCACCGTGCA 61.553 55.000 0.00 0.00 0.00 4.57
425 427 1.448540 GTCCTCATCCACCGTGCAG 60.449 63.158 0.00 0.00 0.00 4.41
426 428 2.821366 CCTCATCCACCGTGCAGC 60.821 66.667 0.00 0.00 0.00 5.25
427 429 3.190849 CTCATCCACCGTGCAGCG 61.191 66.667 0.00 0.00 40.95 5.18
428 430 3.647649 CTCATCCACCGTGCAGCGA 62.648 63.158 9.75 0.00 44.77 4.93
429 431 3.190849 CATCCACCGTGCAGCGAG 61.191 66.667 9.75 3.80 44.77 5.03
430 432 3.381983 ATCCACCGTGCAGCGAGA 61.382 61.111 9.75 4.94 44.77 4.04
431 433 2.725312 ATCCACCGTGCAGCGAGAT 61.725 57.895 9.75 6.63 44.77 2.75
432 434 2.635229 ATCCACCGTGCAGCGAGATC 62.635 60.000 9.75 0.00 44.77 2.75
433 435 2.887568 CACCGTGCAGCGAGATCC 60.888 66.667 9.75 0.00 44.77 3.36
434 436 3.381983 ACCGTGCAGCGAGATCCA 61.382 61.111 9.75 0.00 44.77 3.41
435 437 2.107750 CCGTGCAGCGAGATCCAT 59.892 61.111 9.75 0.00 44.77 3.41
436 438 1.953138 CCGTGCAGCGAGATCCATC 60.953 63.158 9.75 0.00 44.77 3.51
437 439 1.953138 CGTGCAGCGAGATCCATCC 60.953 63.158 3.04 0.00 44.77 3.51
438 440 1.445095 GTGCAGCGAGATCCATCCT 59.555 57.895 0.00 0.00 0.00 3.24
439 441 0.599728 GTGCAGCGAGATCCATCCTC 60.600 60.000 0.00 0.00 0.00 3.71
440 442 1.005156 GCAGCGAGATCCATCCTCC 60.005 63.158 0.00 0.00 0.00 4.30
441 443 1.670590 CAGCGAGATCCATCCTCCC 59.329 63.158 0.00 0.00 0.00 4.30
442 444 1.905843 AGCGAGATCCATCCTCCCG 60.906 63.158 0.00 0.00 0.00 5.14
443 445 2.203771 GCGAGATCCATCCTCCCGT 61.204 63.158 0.00 0.00 0.00 5.28
444 446 1.960612 CGAGATCCATCCTCCCGTC 59.039 63.158 0.00 0.00 0.00 4.79
445 447 1.857318 CGAGATCCATCCTCCCGTCG 61.857 65.000 0.00 0.00 0.00 5.12
446 448 0.537600 GAGATCCATCCTCCCGTCGA 60.538 60.000 0.00 0.00 0.00 4.20
447 449 0.106167 AGATCCATCCTCCCGTCGAA 60.106 55.000 0.00 0.00 0.00 3.71
448 450 0.315568 GATCCATCCTCCCGTCGAAG 59.684 60.000 0.00 0.00 0.00 3.79
449 451 1.749334 ATCCATCCTCCCGTCGAAGC 61.749 60.000 0.00 0.00 0.00 3.86
450 452 2.278857 CATCCTCCCGTCGAAGCG 60.279 66.667 0.00 0.00 0.00 4.68
451 453 4.208686 ATCCTCCCGTCGAAGCGC 62.209 66.667 0.00 0.00 0.00 5.92
456 458 4.137872 CCCGTCGAAGCGCCCTAA 62.138 66.667 2.29 0.00 0.00 2.69
457 459 2.106332 CCGTCGAAGCGCCCTAAT 59.894 61.111 2.29 0.00 0.00 1.73
458 460 2.237751 CCGTCGAAGCGCCCTAATG 61.238 63.158 2.29 0.00 0.00 1.90
459 461 2.237751 CGTCGAAGCGCCCTAATGG 61.238 63.158 2.29 0.00 37.09 3.16
460 462 1.153429 GTCGAAGCGCCCTAATGGT 60.153 57.895 2.29 0.00 36.04 3.55
461 463 0.103572 GTCGAAGCGCCCTAATGGTA 59.896 55.000 2.29 0.00 36.04 3.25
462 464 1.045407 TCGAAGCGCCCTAATGGTAT 58.955 50.000 2.29 0.00 36.04 2.73
463 465 1.414919 TCGAAGCGCCCTAATGGTATT 59.585 47.619 2.29 0.00 36.04 1.89
464 466 2.158871 TCGAAGCGCCCTAATGGTATTT 60.159 45.455 2.29 0.00 36.04 1.40
465 467 2.616842 CGAAGCGCCCTAATGGTATTTT 59.383 45.455 2.29 0.00 36.04 1.82
466 468 3.066203 CGAAGCGCCCTAATGGTATTTTT 59.934 43.478 2.29 0.00 36.04 1.94
487 489 6.610741 TTTTTCTCTTTCTCTGTGAAGCTC 57.389 37.500 0.00 0.00 35.89 4.09
488 490 5.543507 TTTCTCTTTCTCTGTGAAGCTCT 57.456 39.130 0.00 0.00 35.89 4.09
489 491 4.517952 TCTCTTTCTCTGTGAAGCTCTG 57.482 45.455 0.00 0.00 35.89 3.35
490 492 3.894427 TCTCTTTCTCTGTGAAGCTCTGT 59.106 43.478 0.00 0.00 35.89 3.41
491 493 4.343526 TCTCTTTCTCTGTGAAGCTCTGTT 59.656 41.667 0.00 0.00 35.89 3.16
492 494 5.028549 TCTTTCTCTGTGAAGCTCTGTTT 57.971 39.130 0.00 0.00 35.89 2.83
493 495 5.431765 TCTTTCTCTGTGAAGCTCTGTTTT 58.568 37.500 0.00 0.00 35.89 2.43
494 496 5.295292 TCTTTCTCTGTGAAGCTCTGTTTTG 59.705 40.000 0.00 0.00 35.89 2.44
495 497 4.406648 TCTCTGTGAAGCTCTGTTTTGA 57.593 40.909 0.00 0.00 0.00 2.69
496 498 4.769688 TCTCTGTGAAGCTCTGTTTTGAA 58.230 39.130 0.00 0.00 0.00 2.69
497 499 5.185454 TCTCTGTGAAGCTCTGTTTTGAAA 58.815 37.500 0.00 0.00 0.00 2.69
498 500 5.647658 TCTCTGTGAAGCTCTGTTTTGAAAA 59.352 36.000 0.00 0.00 0.00 2.29
499 501 6.319658 TCTCTGTGAAGCTCTGTTTTGAAAAT 59.680 34.615 0.00 0.00 0.00 1.82
500 502 7.498900 TCTCTGTGAAGCTCTGTTTTGAAAATA 59.501 33.333 0.00 0.00 0.00 1.40
501 503 8.169977 TCTGTGAAGCTCTGTTTTGAAAATAT 57.830 30.769 0.00 0.00 0.00 1.28
502 504 8.632679 TCTGTGAAGCTCTGTTTTGAAAATATT 58.367 29.630 0.00 0.00 0.00 1.28
503 505 9.252962 CTGTGAAGCTCTGTTTTGAAAATATTT 57.747 29.630 0.00 0.00 0.00 1.40
504 506 9.033481 TGTGAAGCTCTGTTTTGAAAATATTTG 57.967 29.630 0.39 0.00 0.00 2.32
505 507 8.490355 GTGAAGCTCTGTTTTGAAAATATTTGG 58.510 33.333 0.39 0.00 0.00 3.28
506 508 8.203485 TGAAGCTCTGTTTTGAAAATATTTGGT 58.797 29.630 0.39 0.00 0.00 3.67
507 509 7.951530 AGCTCTGTTTTGAAAATATTTGGTG 57.048 32.000 0.39 0.00 0.00 4.17
508 510 7.500141 AGCTCTGTTTTGAAAATATTTGGTGT 58.500 30.769 0.39 0.00 0.00 4.16
509 511 7.986889 AGCTCTGTTTTGAAAATATTTGGTGTT 59.013 29.630 0.39 0.00 0.00 3.32
510 512 8.611757 GCTCTGTTTTGAAAATATTTGGTGTTT 58.388 29.630 0.39 0.00 0.00 2.83
522 524 2.641197 GGTGTTTTGATCACCGGCT 58.359 52.632 0.00 0.00 44.34 5.52
523 525 0.958822 GGTGTTTTGATCACCGGCTT 59.041 50.000 0.00 0.00 44.34 4.35
524 526 1.339929 GGTGTTTTGATCACCGGCTTT 59.660 47.619 0.00 0.00 44.34 3.51
525 527 2.554893 GGTGTTTTGATCACCGGCTTTA 59.445 45.455 0.00 0.00 44.34 1.85
526 528 3.004944 GGTGTTTTGATCACCGGCTTTAA 59.995 43.478 0.00 0.00 44.34 1.52
527 529 4.226761 GTGTTTTGATCACCGGCTTTAAG 58.773 43.478 0.00 0.00 0.00 1.85
528 530 3.886505 TGTTTTGATCACCGGCTTTAAGT 59.113 39.130 0.00 0.00 0.00 2.24
529 531 4.023536 TGTTTTGATCACCGGCTTTAAGTC 60.024 41.667 0.00 0.00 0.00 3.01
530 532 3.410631 TTGATCACCGGCTTTAAGTCA 57.589 42.857 0.00 0.00 0.00 3.41
531 533 2.972625 TGATCACCGGCTTTAAGTCAG 58.027 47.619 0.00 0.00 0.00 3.51
532 534 2.301870 TGATCACCGGCTTTAAGTCAGT 59.698 45.455 0.00 0.00 0.00 3.41
533 535 2.450609 TCACCGGCTTTAAGTCAGTC 57.549 50.000 0.00 0.00 0.00 3.51
534 536 1.001633 TCACCGGCTTTAAGTCAGTCC 59.998 52.381 0.00 0.00 0.00 3.85
535 537 1.053424 ACCGGCTTTAAGTCAGTCCA 58.947 50.000 0.00 0.00 0.00 4.02
536 538 1.270678 ACCGGCTTTAAGTCAGTCCAC 60.271 52.381 0.00 0.00 0.00 4.02
537 539 1.439679 CGGCTTTAAGTCAGTCCACC 58.560 55.000 0.00 0.00 0.00 4.61
538 540 1.439679 GGCTTTAAGTCAGTCCACCG 58.560 55.000 0.00 0.00 0.00 4.94
539 541 1.439679 GCTTTAAGTCAGTCCACCGG 58.560 55.000 0.00 0.00 0.00 5.28
540 542 1.944430 GCTTTAAGTCAGTCCACCGGG 60.944 57.143 6.32 0.00 0.00 5.73
541 543 1.621814 CTTTAAGTCAGTCCACCGGGA 59.378 52.381 6.32 0.00 42.29 5.14
555 557 3.281240 GGGAACGCTGACGGTAGA 58.719 61.111 0.00 0.00 41.26 2.59
556 558 1.588082 GGGAACGCTGACGGTAGAA 59.412 57.895 0.00 0.00 41.26 2.10
557 559 0.735287 GGGAACGCTGACGGTAGAAC 60.735 60.000 0.00 0.00 41.26 3.01
558 560 0.038892 GGAACGCTGACGGTAGAACA 60.039 55.000 0.00 0.00 41.26 3.18
559 561 1.603678 GGAACGCTGACGGTAGAACAA 60.604 52.381 0.00 0.00 41.26 2.83
560 562 1.454653 GAACGCTGACGGTAGAACAAC 59.545 52.381 0.00 0.00 41.26 3.32
561 563 0.672342 ACGCTGACGGTAGAACAACT 59.328 50.000 0.00 0.00 46.04 3.16
562 564 1.335689 ACGCTGACGGTAGAACAACTC 60.336 52.381 0.00 0.00 46.04 3.01
563 565 1.711206 GCTGACGGTAGAACAACTCC 58.289 55.000 0.00 0.00 0.00 3.85
564 566 1.272769 GCTGACGGTAGAACAACTCCT 59.727 52.381 0.00 0.00 0.00 3.69
565 567 2.671632 GCTGACGGTAGAACAACTCCTC 60.672 54.545 0.00 0.00 0.00 3.71
566 568 1.891150 TGACGGTAGAACAACTCCTCC 59.109 52.381 0.00 0.00 0.00 4.30
567 569 1.204231 GACGGTAGAACAACTCCTCCC 59.796 57.143 0.00 0.00 0.00 4.30
568 570 1.203149 ACGGTAGAACAACTCCTCCCT 60.203 52.381 0.00 0.00 0.00 4.20
569 571 1.477295 CGGTAGAACAACTCCTCCCTC 59.523 57.143 0.00 0.00 0.00 4.30
570 572 1.477295 GGTAGAACAACTCCTCCCTCG 59.523 57.143 0.00 0.00 0.00 4.63
571 573 1.135053 GTAGAACAACTCCTCCCTCGC 60.135 57.143 0.00 0.00 0.00 5.03
572 574 0.832135 AGAACAACTCCTCCCTCGCA 60.832 55.000 0.00 0.00 0.00 5.10
573 575 0.250513 GAACAACTCCTCCCTCGCAT 59.749 55.000 0.00 0.00 0.00 4.73
574 576 1.480954 GAACAACTCCTCCCTCGCATA 59.519 52.381 0.00 0.00 0.00 3.14
575 577 1.115467 ACAACTCCTCCCTCGCATAG 58.885 55.000 0.00 0.00 0.00 2.23
576 578 1.342076 ACAACTCCTCCCTCGCATAGA 60.342 52.381 0.00 0.00 0.00 1.98
577 579 1.967066 CAACTCCTCCCTCGCATAGAT 59.033 52.381 0.00 0.00 0.00 1.98
578 580 1.917872 ACTCCTCCCTCGCATAGATC 58.082 55.000 0.00 0.00 0.00 2.75
579 581 1.427368 ACTCCTCCCTCGCATAGATCT 59.573 52.381 0.00 0.00 0.00 2.75
580 582 2.091541 CTCCTCCCTCGCATAGATCTC 58.908 57.143 0.00 0.00 0.00 2.75
581 583 1.707989 TCCTCCCTCGCATAGATCTCT 59.292 52.381 0.00 0.00 0.00 3.10
582 584 2.091541 CCTCCCTCGCATAGATCTCTC 58.908 57.143 0.00 0.00 0.00 3.20
583 585 2.290896 CCTCCCTCGCATAGATCTCTCT 60.291 54.545 0.00 0.00 35.39 3.10
584 586 3.009723 CTCCCTCGCATAGATCTCTCTC 58.990 54.545 0.00 0.00 32.66 3.20
585 587 2.373502 TCCCTCGCATAGATCTCTCTCA 59.626 50.000 0.00 0.00 32.66 3.27
586 588 3.153130 CCCTCGCATAGATCTCTCTCAA 58.847 50.000 0.00 0.00 32.66 3.02
587 589 3.057596 CCCTCGCATAGATCTCTCTCAAC 60.058 52.174 0.00 0.00 32.66 3.18
588 590 3.820467 CCTCGCATAGATCTCTCTCAACT 59.180 47.826 0.00 0.00 32.66 3.16
589 591 4.278170 CCTCGCATAGATCTCTCTCAACTT 59.722 45.833 0.00 0.00 32.66 2.66
590 592 5.221224 CCTCGCATAGATCTCTCTCAACTTT 60.221 44.000 0.00 0.00 32.66 2.66
591 593 6.214191 TCGCATAGATCTCTCTCAACTTTT 57.786 37.500 0.00 0.00 32.66 2.27
592 594 6.269315 TCGCATAGATCTCTCTCAACTTTTC 58.731 40.000 0.00 0.00 32.66 2.29
593 595 5.461737 CGCATAGATCTCTCTCAACTTTTCC 59.538 44.000 0.00 0.00 32.66 3.13
594 596 6.581712 GCATAGATCTCTCTCAACTTTTCCT 58.418 40.000 0.00 0.00 32.66 3.36
595 597 6.701400 GCATAGATCTCTCTCAACTTTTCCTC 59.299 42.308 0.00 0.00 32.66 3.71
596 598 7.632462 GCATAGATCTCTCTCAACTTTTCCTCA 60.632 40.741 0.00 0.00 32.66 3.86
597 599 6.678568 AGATCTCTCTCAACTTTTCCTCAA 57.321 37.500 0.00 0.00 0.00 3.02
598 600 7.256494 AGATCTCTCTCAACTTTTCCTCAAT 57.744 36.000 0.00 0.00 0.00 2.57
599 601 7.104939 AGATCTCTCTCAACTTTTCCTCAATG 58.895 38.462 0.00 0.00 0.00 2.82
600 602 5.555017 TCTCTCTCAACTTTTCCTCAATGG 58.445 41.667 0.00 0.00 37.10 3.16
601 603 4.074970 TCTCTCAACTTTTCCTCAATGGC 58.925 43.478 0.00 0.00 35.26 4.40
602 604 4.077822 CTCTCAACTTTTCCTCAATGGCT 58.922 43.478 0.00 0.00 35.26 4.75
603 605 4.074970 TCTCAACTTTTCCTCAATGGCTC 58.925 43.478 0.00 0.00 35.26 4.70
604 606 2.813754 TCAACTTTTCCTCAATGGCTCG 59.186 45.455 0.00 0.00 35.26 5.03
605 607 1.826385 ACTTTTCCTCAATGGCTCGG 58.174 50.000 0.00 0.00 35.26 4.63
606 608 1.098050 CTTTTCCTCAATGGCTCGGG 58.902 55.000 0.00 0.00 35.26 5.14
607 609 0.404040 TTTTCCTCAATGGCTCGGGT 59.596 50.000 0.00 0.00 35.26 5.28
608 610 0.404040 TTTCCTCAATGGCTCGGGTT 59.596 50.000 0.00 0.00 35.26 4.11
609 611 0.404040 TTCCTCAATGGCTCGGGTTT 59.596 50.000 0.00 0.00 35.26 3.27
610 612 0.035439 TCCTCAATGGCTCGGGTTTC 60.035 55.000 0.00 0.00 35.26 2.78
611 613 1.032114 CCTCAATGGCTCGGGTTTCC 61.032 60.000 0.00 0.00 0.00 3.13
612 614 0.322456 CTCAATGGCTCGGGTTTCCA 60.322 55.000 0.00 0.00 0.00 3.53
613 615 0.322456 TCAATGGCTCGGGTTTCCAG 60.322 55.000 0.00 0.00 32.78 3.86
614 616 0.609131 CAATGGCTCGGGTTTCCAGT 60.609 55.000 0.00 0.00 32.78 4.00
615 617 0.609131 AATGGCTCGGGTTTCCAGTG 60.609 55.000 0.00 0.00 32.78 3.66
619 621 0.250338 GCTCGGGTTTCCAGTGAACT 60.250 55.000 0.00 0.00 0.00 3.01
656 658 1.374125 CTCGCATGAACACCACCGA 60.374 57.895 0.00 0.00 33.03 4.69
673 675 1.406751 CCGATGGACACCAATACTGCA 60.407 52.381 0.00 0.00 36.95 4.41
697 699 1.134226 GTAACGACGTCACACCAAGG 58.866 55.000 17.16 0.00 0.00 3.61
719 721 1.770658 CAGGCCAGATGGTCCAGATAA 59.229 52.381 5.01 0.00 41.83 1.75
760 786 4.331137 CACATTAGACCGCGTACAAAATG 58.669 43.478 4.92 13.77 0.00 2.32
771 797 4.159120 GCGTACAAAATGGAAAGAGAAGC 58.841 43.478 0.00 0.00 0.00 3.86
869 896 0.389817 CGCTGACAAATCTCCGGTGA 60.390 55.000 8.96 8.96 0.00 4.02
881 918 2.261671 CGGTGAGGTCCGGTCTTG 59.738 66.667 0.00 0.00 45.88 3.02
930 969 2.125350 CGGCTGCTCCCTCACTTC 60.125 66.667 0.00 0.00 0.00 3.01
954 994 8.606754 TCCATAGTACTCCGTATCTAGTAGAT 57.393 38.462 16.75 16.75 38.70 1.98
967 1007 8.172484 CGTATCTAGTAGATTACTGCAGATCAC 58.828 40.741 23.35 13.57 39.81 3.06
1238 1287 3.145551 CGTCCAGGGGGAGGTACG 61.146 72.222 0.00 0.00 46.12 3.67
1239 1288 2.038490 GTCCAGGGGGAGGTACGT 59.962 66.667 0.00 0.00 46.12 3.57
1240 1289 1.307647 GTCCAGGGGGAGGTACGTA 59.692 63.158 0.00 0.00 46.12 3.57
1241 1290 1.039785 GTCCAGGGGGAGGTACGTAC 61.040 65.000 17.56 17.56 46.12 3.67
1367 1690 3.525537 ACAGTAATCTGATCGGCAGTTG 58.474 45.455 0.00 0.00 45.14 3.16
1432 1767 1.065199 CCACCTGAAGCTGAAGGCATA 60.065 52.381 13.64 0.00 44.79 3.14
1449 1784 2.739609 GCATAACATTTTGCTGCCTCCC 60.740 50.000 0.00 0.00 35.95 4.30
1664 1999 7.873719 TCTTGGTGAGTTCACTTTTATTCAA 57.126 32.000 11.67 5.31 45.73 2.69
1701 2036 9.573166 CCAGGTCTGGTTATCATTAATTCATTA 57.427 33.333 8.78 0.00 45.53 1.90
1729 2064 9.924650 AGTAATCTACTTGTTATTCTGAAACGT 57.075 29.630 0.00 0.00 34.86 3.99
1744 2079 6.491394 TCTGAAACGTGAAAGTTATGGTTTG 58.509 36.000 0.00 0.00 33.41 2.93
1787 2373 8.659925 AGTCTGCTATAGAATCAATCAAAGTG 57.340 34.615 3.21 0.00 37.12 3.16
1990 2576 1.740718 GCCGGTTCTGATGAGAAGGTC 60.741 57.143 1.90 0.00 38.95 3.85
2094 2807 8.544409 CGAAGCTTTCTATTTTTGATGAGATG 57.456 34.615 0.00 0.00 0.00 2.90
2176 2889 2.896039 ACTACAAGAAGGAGCAGGACT 58.104 47.619 0.00 0.00 0.00 3.85
2220 2933 2.692741 GCAGGCCCCTTCCCTAGT 60.693 66.667 0.00 0.00 0.00 2.57
2262 2982 9.319143 CGATTCTTCTAACTTCCAATGAATAGT 57.681 33.333 0.00 0.00 0.00 2.12
2307 3030 3.691118 GTGCCATGATACTTGCTTTCAGA 59.309 43.478 0.00 0.00 0.00 3.27
2565 3289 2.187163 GCCGGCTACCTCAAGGAC 59.813 66.667 22.15 0.00 38.94 3.85
2722 3509 0.388659 CCTCCTGGATCGAGAAGCAG 59.611 60.000 6.27 0.00 34.57 4.24
2756 3546 7.593273 CGTTCAGAGACCAGAATTCAGATATAC 59.407 40.741 8.44 0.00 0.00 1.47
2839 3641 5.505181 TTGGAGAAAGCAGAATCCTACTT 57.495 39.130 0.00 0.00 32.79 2.24
2840 3642 6.620877 TTGGAGAAAGCAGAATCCTACTTA 57.379 37.500 0.00 0.00 32.79 2.24
2841 3643 6.227298 TGGAGAAAGCAGAATCCTACTTAG 57.773 41.667 0.00 0.00 32.79 2.18
2842 3644 5.129485 TGGAGAAAGCAGAATCCTACTTAGG 59.871 44.000 0.00 0.00 45.02 2.69
2973 3779 2.435586 CTCTCTTGGGCTGCCACG 60.436 66.667 22.05 7.87 0.00 4.94
3016 3822 2.035321 CGTGTTTTGGTTAAGCACCCAT 59.965 45.455 6.90 0.00 46.68 4.00
3050 3856 2.360844 GCCTTGAGAAAGGTAAGAGCC 58.639 52.381 6.39 0.00 42.00 4.70
3126 3932 5.869753 AATGTTGAATGTGTCAGCTCTAC 57.130 39.130 0.00 0.00 38.25 2.59
3143 3950 7.579726 CAGCTCTACTGGCATTGATTAATTAC 58.420 38.462 0.00 0.00 43.19 1.89
3144 3951 6.425114 AGCTCTACTGGCATTGATTAATTACG 59.575 38.462 0.00 0.00 0.00 3.18
3149 3956 3.249799 TGGCATTGATTAATTACGCTCGG 59.750 43.478 0.00 0.00 0.00 4.63
3160 3967 1.286501 TACGCTCGGTTGATTCATGC 58.713 50.000 0.00 0.00 0.00 4.06
3170 3977 3.255149 GGTTGATTCATGCCATCCTCATC 59.745 47.826 0.00 0.00 0.00 2.92
3173 3980 3.137728 TGATTCATGCCATCCTCATCTGT 59.862 43.478 0.00 0.00 0.00 3.41
3174 3981 3.657398 TTCATGCCATCCTCATCTGTT 57.343 42.857 0.00 0.00 0.00 3.16
3175 3982 3.657398 TCATGCCATCCTCATCTGTTT 57.343 42.857 0.00 0.00 0.00 2.83
3176 3983 3.548770 TCATGCCATCCTCATCTGTTTC 58.451 45.455 0.00 0.00 0.00 2.78
3177 3984 3.201487 TCATGCCATCCTCATCTGTTTCT 59.799 43.478 0.00 0.00 0.00 2.52
3178 3985 4.409901 TCATGCCATCCTCATCTGTTTCTA 59.590 41.667 0.00 0.00 0.00 2.10
3179 3986 4.142609 TGCCATCCTCATCTGTTTCTAC 57.857 45.455 0.00 0.00 0.00 2.59
3180 3987 3.776969 TGCCATCCTCATCTGTTTCTACT 59.223 43.478 0.00 0.00 0.00 2.57
3181 3988 4.125703 GCCATCCTCATCTGTTTCTACTG 58.874 47.826 0.00 0.00 0.00 2.74
3182 3989 4.141846 GCCATCCTCATCTGTTTCTACTGA 60.142 45.833 0.00 0.00 36.77 3.41
3183 3990 5.454471 GCCATCCTCATCTGTTTCTACTGAT 60.454 44.000 0.00 0.00 41.83 2.90
3184 3991 6.590068 CCATCCTCATCTGTTTCTACTGATT 58.410 40.000 0.00 0.00 39.91 2.57
3185 3992 7.687837 GCCATCCTCATCTGTTTCTACTGATTA 60.688 40.741 0.00 0.00 39.91 1.75
3186 3993 8.206867 CCATCCTCATCTGTTTCTACTGATTAA 58.793 37.037 0.00 0.00 39.91 1.40
3187 3994 9.775854 CATCCTCATCTGTTTCTACTGATTAAT 57.224 33.333 0.00 0.00 39.91 1.40
3188 3995 9.775854 ATCCTCATCTGTTTCTACTGATTAATG 57.224 33.333 0.00 0.00 39.91 1.90
3189 3996 8.762645 TCCTCATCTGTTTCTACTGATTAATGT 58.237 33.333 0.00 0.00 39.91 2.71
3192 3999 9.516314 TCATCTGTTTCTACTGATTAATGTACG 57.484 33.333 0.00 0.00 39.91 3.67
3193 4000 9.516314 CATCTGTTTCTACTGATTAATGTACGA 57.484 33.333 0.00 0.00 39.91 3.43
3194 4001 9.737427 ATCTGTTTCTACTGATTAATGTACGAG 57.263 33.333 0.00 0.00 39.16 4.18
3195 4002 8.188799 TCTGTTTCTACTGATTAATGTACGAGG 58.811 37.037 0.00 0.00 0.00 4.63
3196 4003 8.058667 TGTTTCTACTGATTAATGTACGAGGA 57.941 34.615 0.00 0.00 0.00 3.71
3197 4004 8.692710 TGTTTCTACTGATTAATGTACGAGGAT 58.307 33.333 0.00 0.00 0.00 3.24
3198 4005 8.969267 GTTTCTACTGATTAATGTACGAGGATG 58.031 37.037 0.00 0.00 0.00 3.51
3199 4006 6.678878 TCTACTGATTAATGTACGAGGATGC 58.321 40.000 0.00 0.00 0.00 3.91
3278 4085 7.673641 ATGGTGAGAATAGACTCATCTTCTT 57.326 36.000 9.74 0.00 46.36 2.52
3283 4090 9.950680 GTGAGAATAGACTCATCTTCTTCTTAG 57.049 37.037 0.00 0.00 46.36 2.18
3322 4129 1.075601 TGGGAAGAAGGGCAAGATGT 58.924 50.000 0.00 0.00 0.00 3.06
3353 4183 3.551046 GCACATGGATCCTAGTAGTGTCG 60.551 52.174 14.23 0.10 0.00 4.35
3398 4228 3.739167 GCCGCCGTTGCCAATATA 58.261 55.556 0.00 0.00 0.00 0.86
3409 4239 4.058124 GTTGCCAATATAGTCATCTCGCA 58.942 43.478 0.00 0.00 0.00 5.10
3460 4290 3.889815 CATGCATTCTTCTAACCCCTGA 58.110 45.455 0.00 0.00 0.00 3.86
3464 4294 3.217626 CATTCTTCTAACCCCTGATGGC 58.782 50.000 0.00 0.00 0.00 4.40
3525 4356 9.507329 TTCTTATTTGCACTTCTTCTGTTCTAT 57.493 29.630 0.00 0.00 0.00 1.98
3531 4362 4.434857 GCACTTCTTCTGTTCTATTCGCAC 60.435 45.833 0.00 0.00 0.00 5.34
3555 4386 2.755469 ATCATGTTGGTGGCGGGC 60.755 61.111 0.00 0.00 0.00 6.13
3609 4440 2.102084 GGTAACGACCCTACATTCCCTC 59.898 54.545 0.00 0.00 40.23 4.30
3634 4465 3.119531 CCTCTGTTCTGTTTTGTGTTGCA 60.120 43.478 0.00 0.00 0.00 4.08
3653 4484 7.945033 GTTGCAAACTAAAGAATGATCCAAA 57.055 32.000 0.00 0.00 45.32 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 8.469309 AATGTGCTCTATAAAATAGCCACAAT 57.531 30.769 16.72 10.54 35.33 2.71
66 67 6.206438 TCATGATTTCGAAAATCAACTCACCA 59.794 34.615 15.66 0.79 39.75 4.17
129 130 3.146847 GGTGAAGGATTTTCTGAACGGT 58.853 45.455 0.00 0.00 0.00 4.83
192 193 0.830023 GGCTCCCGGCTCTCTTCTAT 60.830 60.000 0.00 0.00 41.46 1.98
238 239 4.394920 TCGAGACAGTTTATTCCAAATGGC 59.605 41.667 0.00 0.00 34.44 4.40
255 257 5.683743 CCTTTTCTAATGACGAGATCGAGAC 59.316 44.000 9.58 1.15 43.02 3.36
266 268 3.753272 TGACAGCAGCCTTTTCTAATGAC 59.247 43.478 0.00 0.00 0.00 3.06
354 356 1.066143 ACTGTTGATGTCCGATGGGTC 60.066 52.381 0.00 0.00 33.83 4.46
355 357 0.984230 ACTGTTGATGTCCGATGGGT 59.016 50.000 0.00 0.00 33.83 4.51
356 358 1.656652 GACTGTTGATGTCCGATGGG 58.343 55.000 0.00 0.00 0.00 4.00
357 359 1.280982 CGACTGTTGATGTCCGATGG 58.719 55.000 0.00 0.00 0.00 3.51
358 360 1.996292 ACGACTGTTGATGTCCGATG 58.004 50.000 1.15 0.00 0.00 3.84
359 361 2.607187 GAACGACTGTTGATGTCCGAT 58.393 47.619 1.15 0.00 38.78 4.18
360 362 1.664874 CGAACGACTGTTGATGTCCGA 60.665 52.381 1.15 0.00 38.78 4.55
361 363 0.708370 CGAACGACTGTTGATGTCCG 59.292 55.000 1.15 0.00 38.78 4.79
362 364 1.779569 ACGAACGACTGTTGATGTCC 58.220 50.000 1.15 0.00 38.78 4.02
363 365 3.818387 TCTACGAACGACTGTTGATGTC 58.182 45.455 1.15 0.00 38.78 3.06
364 366 3.909776 TCTACGAACGACTGTTGATGT 57.090 42.857 1.15 0.06 38.78 3.06
365 367 4.915667 TCTTTCTACGAACGACTGTTGATG 59.084 41.667 1.15 0.00 38.78 3.07
366 368 5.117355 TCTTTCTACGAACGACTGTTGAT 57.883 39.130 1.15 0.00 38.78 2.57
367 369 4.534168 CTCTTTCTACGAACGACTGTTGA 58.466 43.478 1.15 0.00 38.78 3.18
368 370 3.669122 CCTCTTTCTACGAACGACTGTTG 59.331 47.826 0.14 0.00 38.78 3.33
369 371 3.856267 GCCTCTTTCTACGAACGACTGTT 60.856 47.826 0.14 0.00 42.23 3.16
370 372 2.351544 GCCTCTTTCTACGAACGACTGT 60.352 50.000 0.14 0.00 0.00 3.55
371 373 2.251893 GCCTCTTTCTACGAACGACTG 58.748 52.381 0.14 0.00 0.00 3.51
372 374 1.884579 TGCCTCTTTCTACGAACGACT 59.115 47.619 0.14 0.00 0.00 4.18
373 375 2.251893 CTGCCTCTTTCTACGAACGAC 58.748 52.381 0.14 0.00 0.00 4.34
374 376 1.402456 GCTGCCTCTTTCTACGAACGA 60.402 52.381 0.14 0.00 0.00 3.85
375 377 0.992802 GCTGCCTCTTTCTACGAACG 59.007 55.000 0.00 0.00 0.00 3.95
376 378 2.080286 TGCTGCCTCTTTCTACGAAC 57.920 50.000 0.00 0.00 0.00 3.95
377 379 2.037251 ACTTGCTGCCTCTTTCTACGAA 59.963 45.455 0.00 0.00 0.00 3.85
378 380 1.618837 ACTTGCTGCCTCTTTCTACGA 59.381 47.619 0.00 0.00 0.00 3.43
379 381 2.086054 ACTTGCTGCCTCTTTCTACG 57.914 50.000 0.00 0.00 0.00 3.51
380 382 3.669536 AGAACTTGCTGCCTCTTTCTAC 58.330 45.455 0.00 0.00 0.00 2.59
381 383 3.580458 AGAGAACTTGCTGCCTCTTTCTA 59.420 43.478 0.00 0.00 32.55 2.10
382 384 2.371510 AGAGAACTTGCTGCCTCTTTCT 59.628 45.455 0.00 0.00 32.55 2.52
383 385 2.741517 GAGAGAACTTGCTGCCTCTTTC 59.258 50.000 6.79 0.79 36.25 2.62
384 386 2.105477 TGAGAGAACTTGCTGCCTCTTT 59.895 45.455 6.79 0.00 36.25 2.52
385 387 1.696336 TGAGAGAACTTGCTGCCTCTT 59.304 47.619 6.79 0.00 36.25 2.85
386 388 1.346062 TGAGAGAACTTGCTGCCTCT 58.654 50.000 5.26 5.26 38.57 3.69
387 389 2.008329 CATGAGAGAACTTGCTGCCTC 58.992 52.381 0.00 0.00 0.00 4.70
388 390 1.350351 ACATGAGAGAACTTGCTGCCT 59.650 47.619 0.00 0.00 0.00 4.75
389 391 1.736681 GACATGAGAGAACTTGCTGCC 59.263 52.381 0.00 0.00 0.00 4.85
390 392 1.736681 GGACATGAGAGAACTTGCTGC 59.263 52.381 0.00 0.00 0.00 5.25
391 393 3.260740 GAGGACATGAGAGAACTTGCTG 58.739 50.000 0.00 0.00 0.00 4.41
392 394 2.902486 TGAGGACATGAGAGAACTTGCT 59.098 45.455 0.00 0.00 0.00 3.91
393 395 3.325293 TGAGGACATGAGAGAACTTGC 57.675 47.619 0.00 0.00 0.00 4.01
394 396 4.081254 TGGATGAGGACATGAGAGAACTTG 60.081 45.833 0.00 0.00 36.82 3.16
395 397 4.081198 GTGGATGAGGACATGAGAGAACTT 60.081 45.833 0.00 0.00 36.82 2.66
396 398 3.450457 GTGGATGAGGACATGAGAGAACT 59.550 47.826 0.00 0.00 36.82 3.01
397 399 3.431486 GGTGGATGAGGACATGAGAGAAC 60.431 52.174 0.00 0.00 36.82 3.01
398 400 2.768527 GGTGGATGAGGACATGAGAGAA 59.231 50.000 0.00 0.00 36.82 2.87
399 401 2.392662 GGTGGATGAGGACATGAGAGA 58.607 52.381 0.00 0.00 36.82 3.10
400 402 1.068281 CGGTGGATGAGGACATGAGAG 59.932 57.143 0.00 0.00 36.82 3.20
401 403 1.114627 CGGTGGATGAGGACATGAGA 58.885 55.000 0.00 0.00 36.82 3.27
402 404 0.826715 ACGGTGGATGAGGACATGAG 59.173 55.000 0.00 0.00 36.82 2.90
403 405 0.536724 CACGGTGGATGAGGACATGA 59.463 55.000 0.00 0.00 36.82 3.07
404 406 1.091771 GCACGGTGGATGAGGACATG 61.092 60.000 10.60 0.00 36.82 3.21
405 407 1.221840 GCACGGTGGATGAGGACAT 59.778 57.895 10.60 0.00 39.67 3.06
406 408 2.171209 CTGCACGGTGGATGAGGACA 62.171 60.000 10.60 0.00 0.00 4.02
407 409 1.448540 CTGCACGGTGGATGAGGAC 60.449 63.158 10.60 0.00 0.00 3.85
408 410 2.981302 CTGCACGGTGGATGAGGA 59.019 61.111 10.60 0.00 0.00 3.71
409 411 2.821366 GCTGCACGGTGGATGAGG 60.821 66.667 10.60 0.00 0.00 3.86
410 412 3.190849 CGCTGCACGGTGGATGAG 61.191 66.667 10.60 0.00 38.44 2.90
411 413 3.647649 CTCGCTGCACGGTGGATGA 62.648 63.158 10.60 7.33 43.89 2.92
412 414 2.913054 ATCTCGCTGCACGGTGGATG 62.913 60.000 10.60 3.07 43.89 3.51
413 415 2.635229 GATCTCGCTGCACGGTGGAT 62.635 60.000 10.60 2.73 43.89 3.41
414 416 3.356639 GATCTCGCTGCACGGTGGA 62.357 63.158 10.60 6.17 43.89 4.02
415 417 2.887568 GATCTCGCTGCACGGTGG 60.888 66.667 10.60 0.00 43.89 4.61
416 418 2.887568 GGATCTCGCTGCACGGTG 60.888 66.667 3.15 3.15 43.89 4.94
417 419 2.635229 GATGGATCTCGCTGCACGGT 62.635 60.000 0.00 0.00 43.89 4.83
418 420 1.953138 GATGGATCTCGCTGCACGG 60.953 63.158 0.00 1.42 43.89 4.94
419 421 1.953138 GGATGGATCTCGCTGCACG 60.953 63.158 0.00 2.79 45.62 5.34
420 422 0.599728 GAGGATGGATCTCGCTGCAC 60.600 60.000 0.00 0.00 0.00 4.57
421 423 1.744639 GAGGATGGATCTCGCTGCA 59.255 57.895 0.00 0.00 0.00 4.41
422 424 1.005156 GGAGGATGGATCTCGCTGC 60.005 63.158 0.00 0.00 32.34 5.25
423 425 1.670590 GGGAGGATGGATCTCGCTG 59.329 63.158 0.00 0.00 39.93 5.18
424 426 1.905843 CGGGAGGATGGATCTCGCT 60.906 63.158 0.00 0.00 40.59 4.93
425 427 2.148558 GACGGGAGGATGGATCTCGC 62.149 65.000 0.00 0.00 39.75 5.03
426 428 1.857318 CGACGGGAGGATGGATCTCG 61.857 65.000 0.00 0.00 32.34 4.04
427 429 0.537600 TCGACGGGAGGATGGATCTC 60.538 60.000 0.00 0.00 0.00 2.75
428 430 0.106167 TTCGACGGGAGGATGGATCT 60.106 55.000 0.00 0.00 0.00 2.75
429 431 0.315568 CTTCGACGGGAGGATGGATC 59.684 60.000 0.00 0.00 0.00 3.36
430 432 1.749334 GCTTCGACGGGAGGATGGAT 61.749 60.000 0.00 0.00 0.00 3.41
431 433 2.423898 GCTTCGACGGGAGGATGGA 61.424 63.158 0.00 0.00 0.00 3.41
432 434 2.107141 GCTTCGACGGGAGGATGG 59.893 66.667 0.00 0.00 0.00 3.51
433 435 2.278857 CGCTTCGACGGGAGGATG 60.279 66.667 0.00 0.00 0.00 3.51
434 436 4.208686 GCGCTTCGACGGGAGGAT 62.209 66.667 10.28 0.00 0.00 3.24
439 441 3.441011 ATTAGGGCGCTTCGACGGG 62.441 63.158 9.23 1.24 34.63 5.28
440 442 2.106332 ATTAGGGCGCTTCGACGG 59.894 61.111 9.23 0.00 34.63 4.79
441 443 2.237751 CCATTAGGGCGCTTCGACG 61.238 63.158 9.23 0.00 34.63 5.12
442 444 0.103572 TACCATTAGGGCGCTTCGAC 59.896 55.000 9.23 0.00 42.05 4.20
443 445 1.045407 ATACCATTAGGGCGCTTCGA 58.955 50.000 9.23 0.00 42.05 3.71
444 446 1.878953 AATACCATTAGGGCGCTTCG 58.121 50.000 9.23 0.00 42.05 3.79
445 447 4.649088 AAAAATACCATTAGGGCGCTTC 57.351 40.909 9.23 0.00 42.05 3.86
464 466 6.259608 CAGAGCTTCACAGAGAAAGAGAAAAA 59.740 38.462 0.00 0.00 35.40 1.94
465 467 5.757320 CAGAGCTTCACAGAGAAAGAGAAAA 59.243 40.000 0.00 0.00 35.40 2.29
466 468 5.163364 ACAGAGCTTCACAGAGAAAGAGAAA 60.163 40.000 0.00 0.00 35.40 2.52
467 469 4.343526 ACAGAGCTTCACAGAGAAAGAGAA 59.656 41.667 0.00 0.00 35.40 2.87
468 470 3.894427 ACAGAGCTTCACAGAGAAAGAGA 59.106 43.478 0.00 0.00 35.40 3.10
469 471 4.255833 ACAGAGCTTCACAGAGAAAGAG 57.744 45.455 0.00 0.00 35.40 2.85
470 472 4.679373 AACAGAGCTTCACAGAGAAAGA 57.321 40.909 0.00 0.00 35.40 2.52
471 473 5.295292 TCAAAACAGAGCTTCACAGAGAAAG 59.705 40.000 0.00 0.00 35.40 2.62
472 474 5.185454 TCAAAACAGAGCTTCACAGAGAAA 58.815 37.500 0.00 0.00 35.40 2.52
473 475 4.769688 TCAAAACAGAGCTTCACAGAGAA 58.230 39.130 0.00 0.00 34.41 2.87
474 476 4.406648 TCAAAACAGAGCTTCACAGAGA 57.593 40.909 0.00 0.00 0.00 3.10
475 477 5.490139 TTTCAAAACAGAGCTTCACAGAG 57.510 39.130 0.00 0.00 0.00 3.35
476 478 5.895636 TTTTCAAAACAGAGCTTCACAGA 57.104 34.783 0.00 0.00 0.00 3.41
477 479 8.807667 AATATTTTCAAAACAGAGCTTCACAG 57.192 30.769 0.00 0.00 0.00 3.66
478 480 9.033481 CAAATATTTTCAAAACAGAGCTTCACA 57.967 29.630 0.00 0.00 0.00 3.58
479 481 8.490355 CCAAATATTTTCAAAACAGAGCTTCAC 58.510 33.333 0.00 0.00 0.00 3.18
480 482 8.203485 ACCAAATATTTTCAAAACAGAGCTTCA 58.797 29.630 0.00 0.00 0.00 3.02
481 483 8.490355 CACCAAATATTTTCAAAACAGAGCTTC 58.510 33.333 0.00 0.00 0.00 3.86
482 484 7.986889 ACACCAAATATTTTCAAAACAGAGCTT 59.013 29.630 0.00 0.00 0.00 3.74
483 485 7.500141 ACACCAAATATTTTCAAAACAGAGCT 58.500 30.769 0.00 0.00 0.00 4.09
484 486 7.713764 ACACCAAATATTTTCAAAACAGAGC 57.286 32.000 0.00 0.00 0.00 4.09
505 507 2.793278 AAAGCCGGTGATCAAAACAC 57.207 45.000 1.90 0.00 37.51 3.32
506 508 3.886505 ACTTAAAGCCGGTGATCAAAACA 59.113 39.130 1.90 0.00 0.00 2.83
507 509 4.023536 TGACTTAAAGCCGGTGATCAAAAC 60.024 41.667 1.90 0.00 0.00 2.43
508 510 4.138290 TGACTTAAAGCCGGTGATCAAAA 58.862 39.130 1.90 0.00 0.00 2.44
509 511 3.745799 TGACTTAAAGCCGGTGATCAAA 58.254 40.909 1.90 0.00 0.00 2.69
510 512 3.244422 ACTGACTTAAAGCCGGTGATCAA 60.244 43.478 1.90 0.00 0.00 2.57
511 513 2.301870 ACTGACTTAAAGCCGGTGATCA 59.698 45.455 1.90 0.00 0.00 2.92
512 514 2.930682 GACTGACTTAAAGCCGGTGATC 59.069 50.000 1.90 0.00 0.00 2.92
513 515 2.354805 GGACTGACTTAAAGCCGGTGAT 60.355 50.000 1.90 0.00 0.00 3.06
514 516 1.001633 GGACTGACTTAAAGCCGGTGA 59.998 52.381 1.90 0.00 0.00 4.02
515 517 1.270625 TGGACTGACTTAAAGCCGGTG 60.271 52.381 1.90 0.00 0.00 4.94
516 518 1.053424 TGGACTGACTTAAAGCCGGT 58.947 50.000 1.90 0.00 0.00 5.28
517 519 1.439679 GTGGACTGACTTAAAGCCGG 58.560 55.000 0.00 0.00 0.00 6.13
518 520 1.439679 GGTGGACTGACTTAAAGCCG 58.560 55.000 0.00 0.00 0.00 5.52
519 521 1.439679 CGGTGGACTGACTTAAAGCC 58.560 55.000 0.00 0.00 0.00 4.35
520 522 1.439679 CCGGTGGACTGACTTAAAGC 58.560 55.000 0.00 0.00 0.00 3.51
521 523 1.621814 TCCCGGTGGACTGACTTAAAG 59.378 52.381 0.00 0.00 35.03 1.85
522 524 1.719529 TCCCGGTGGACTGACTTAAA 58.280 50.000 0.00 0.00 35.03 1.52
523 525 1.345415 GTTCCCGGTGGACTGACTTAA 59.655 52.381 0.00 0.00 41.57 1.85
524 526 0.971386 GTTCCCGGTGGACTGACTTA 59.029 55.000 0.00 0.00 41.57 2.24
525 527 1.752833 GTTCCCGGTGGACTGACTT 59.247 57.895 0.00 0.00 41.57 3.01
526 528 2.571216 CGTTCCCGGTGGACTGACT 61.571 63.158 0.00 0.00 41.57 3.41
527 529 2.048503 CGTTCCCGGTGGACTGAC 60.049 66.667 0.00 0.00 41.57 3.51
528 530 3.998672 GCGTTCCCGGTGGACTGA 61.999 66.667 0.00 0.00 41.57 3.41
529 531 4.003788 AGCGTTCCCGGTGGACTG 62.004 66.667 0.00 0.00 44.33 3.51
536 538 3.695022 CTACCGTCAGCGTTCCCGG 62.695 68.421 0.00 0.00 45.72 5.73
537 539 2.202570 CTACCGTCAGCGTTCCCG 60.203 66.667 0.00 0.00 36.15 5.14
538 540 0.735287 GTTCTACCGTCAGCGTTCCC 60.735 60.000 0.00 0.00 36.15 3.97
539 541 0.038892 TGTTCTACCGTCAGCGTTCC 60.039 55.000 0.00 0.00 36.15 3.62
540 542 1.454653 GTTGTTCTACCGTCAGCGTTC 59.545 52.381 0.00 0.00 36.15 3.95
541 543 1.068127 AGTTGTTCTACCGTCAGCGTT 59.932 47.619 0.00 0.00 36.15 4.84
542 544 0.672342 AGTTGTTCTACCGTCAGCGT 59.328 50.000 0.00 0.00 36.15 5.07
543 545 1.337821 GAGTTGTTCTACCGTCAGCG 58.662 55.000 0.00 0.00 37.95 5.18
544 546 1.272769 AGGAGTTGTTCTACCGTCAGC 59.727 52.381 0.00 0.00 0.00 4.26
545 547 2.094649 GGAGGAGTTGTTCTACCGTCAG 60.095 54.545 0.00 0.00 0.00 3.51
546 548 1.891150 GGAGGAGTTGTTCTACCGTCA 59.109 52.381 0.00 0.00 0.00 4.35
547 549 1.204231 GGGAGGAGTTGTTCTACCGTC 59.796 57.143 0.00 0.00 0.00 4.79
548 550 1.203149 AGGGAGGAGTTGTTCTACCGT 60.203 52.381 0.00 0.00 0.00 4.83
549 551 1.477295 GAGGGAGGAGTTGTTCTACCG 59.523 57.143 0.00 0.00 0.00 4.02
550 552 1.477295 CGAGGGAGGAGTTGTTCTACC 59.523 57.143 0.00 0.00 0.00 3.18
551 553 1.135053 GCGAGGGAGGAGTTGTTCTAC 60.135 57.143 0.00 0.00 0.00 2.59
552 554 1.183549 GCGAGGGAGGAGTTGTTCTA 58.816 55.000 0.00 0.00 0.00 2.10
553 555 0.832135 TGCGAGGGAGGAGTTGTTCT 60.832 55.000 0.00 0.00 0.00 3.01
554 556 0.250513 ATGCGAGGGAGGAGTTGTTC 59.749 55.000 0.00 0.00 0.00 3.18
555 557 1.482593 CTATGCGAGGGAGGAGTTGTT 59.517 52.381 0.00 0.00 0.00 2.83
556 558 1.115467 CTATGCGAGGGAGGAGTTGT 58.885 55.000 0.00 0.00 0.00 3.32
557 559 1.403814 TCTATGCGAGGGAGGAGTTG 58.596 55.000 0.00 0.00 0.00 3.16
558 560 2.158385 AGATCTATGCGAGGGAGGAGTT 60.158 50.000 0.00 0.00 0.00 3.01
559 561 1.427368 AGATCTATGCGAGGGAGGAGT 59.573 52.381 0.00 0.00 0.00 3.85
560 562 2.091541 GAGATCTATGCGAGGGAGGAG 58.908 57.143 0.00 0.00 0.00 3.69
561 563 1.707989 AGAGATCTATGCGAGGGAGGA 59.292 52.381 0.00 0.00 0.00 3.71
562 564 2.091541 GAGAGATCTATGCGAGGGAGG 58.908 57.143 0.00 0.00 0.00 4.30
563 565 3.009723 GAGAGAGATCTATGCGAGGGAG 58.990 54.545 0.00 0.00 0.00 4.30
564 566 2.373502 TGAGAGAGATCTATGCGAGGGA 59.626 50.000 0.00 0.00 0.00 4.20
565 567 2.789213 TGAGAGAGATCTATGCGAGGG 58.211 52.381 0.00 0.00 0.00 4.30
566 568 3.820467 AGTTGAGAGAGATCTATGCGAGG 59.180 47.826 0.00 0.00 0.00 4.63
567 569 5.437289 AAGTTGAGAGAGATCTATGCGAG 57.563 43.478 0.00 0.00 0.00 5.03
568 570 5.843673 AAAGTTGAGAGAGATCTATGCGA 57.156 39.130 0.00 0.00 0.00 5.10
569 571 5.461737 GGAAAAGTTGAGAGAGATCTATGCG 59.538 44.000 0.00 0.00 0.00 4.73
570 572 6.581712 AGGAAAAGTTGAGAGAGATCTATGC 58.418 40.000 0.00 0.00 0.00 3.14
571 573 7.780064 TGAGGAAAAGTTGAGAGAGATCTATG 58.220 38.462 0.00 0.00 0.00 2.23
572 574 7.969690 TGAGGAAAAGTTGAGAGAGATCTAT 57.030 36.000 0.00 0.00 0.00 1.98
573 575 7.782897 TTGAGGAAAAGTTGAGAGAGATCTA 57.217 36.000 0.00 0.00 0.00 1.98
574 576 6.678568 TTGAGGAAAAGTTGAGAGAGATCT 57.321 37.500 0.00 0.00 0.00 2.75
575 577 6.315891 CCATTGAGGAAAAGTTGAGAGAGATC 59.684 42.308 0.00 0.00 41.22 2.75
576 578 6.179040 CCATTGAGGAAAAGTTGAGAGAGAT 58.821 40.000 0.00 0.00 41.22 2.75
577 579 5.555017 CCATTGAGGAAAAGTTGAGAGAGA 58.445 41.667 0.00 0.00 41.22 3.10
578 580 4.155644 GCCATTGAGGAAAAGTTGAGAGAG 59.844 45.833 0.00 0.00 41.22 3.20
579 581 4.074970 GCCATTGAGGAAAAGTTGAGAGA 58.925 43.478 0.00 0.00 41.22 3.10
580 582 4.077822 AGCCATTGAGGAAAAGTTGAGAG 58.922 43.478 0.00 0.00 41.22 3.20
581 583 4.074970 GAGCCATTGAGGAAAAGTTGAGA 58.925 43.478 0.00 0.00 41.22 3.27
582 584 3.120060 CGAGCCATTGAGGAAAAGTTGAG 60.120 47.826 0.00 0.00 41.22 3.02
583 585 2.813754 CGAGCCATTGAGGAAAAGTTGA 59.186 45.455 0.00 0.00 41.22 3.18
584 586 2.095059 CCGAGCCATTGAGGAAAAGTTG 60.095 50.000 0.00 0.00 41.22 3.16
585 587 2.162681 CCGAGCCATTGAGGAAAAGTT 58.837 47.619 0.00 0.00 41.22 2.66
586 588 1.614317 CCCGAGCCATTGAGGAAAAGT 60.614 52.381 0.00 0.00 41.22 2.66
587 589 1.098050 CCCGAGCCATTGAGGAAAAG 58.902 55.000 0.00 0.00 41.22 2.27
588 590 0.404040 ACCCGAGCCATTGAGGAAAA 59.596 50.000 0.00 0.00 41.22 2.29
589 591 0.404040 AACCCGAGCCATTGAGGAAA 59.596 50.000 0.00 0.00 41.22 3.13
590 592 0.404040 AAACCCGAGCCATTGAGGAA 59.596 50.000 0.00 0.00 41.22 3.36
591 593 0.035439 GAAACCCGAGCCATTGAGGA 60.035 55.000 0.00 0.00 41.22 3.71
592 594 1.032114 GGAAACCCGAGCCATTGAGG 61.032 60.000 0.00 0.00 41.84 3.86
593 595 0.322456 TGGAAACCCGAGCCATTGAG 60.322 55.000 0.00 0.00 0.00 3.02
594 596 0.322456 CTGGAAACCCGAGCCATTGA 60.322 55.000 0.00 0.00 0.00 2.57
595 597 0.609131 ACTGGAAACCCGAGCCATTG 60.609 55.000 0.00 0.00 0.00 2.82
596 598 0.609131 CACTGGAAACCCGAGCCATT 60.609 55.000 0.00 0.00 0.00 3.16
597 599 1.002134 CACTGGAAACCCGAGCCAT 60.002 57.895 0.00 0.00 0.00 4.40
598 600 1.701031 TTCACTGGAAACCCGAGCCA 61.701 55.000 0.00 0.00 0.00 4.75
599 601 1.072505 TTCACTGGAAACCCGAGCC 59.927 57.895 0.00 0.00 0.00 4.70
600 602 0.250338 AGTTCACTGGAAACCCGAGC 60.250 55.000 0.00 0.00 34.13 5.03
601 603 1.070134 TGAGTTCACTGGAAACCCGAG 59.930 52.381 0.00 0.00 34.13 4.63
602 604 1.124780 TGAGTTCACTGGAAACCCGA 58.875 50.000 0.00 0.00 34.13 5.14
603 605 1.226746 GTGAGTTCACTGGAAACCCG 58.773 55.000 5.04 0.00 43.25 5.28
604 606 1.226746 CGTGAGTTCACTGGAAACCC 58.773 55.000 10.27 0.00 44.34 4.11
605 607 1.597663 CACGTGAGTTCACTGGAAACC 59.402 52.381 10.90 0.00 46.40 3.27
606 608 2.284417 GTCACGTGAGTTCACTGGAAAC 59.716 50.000 20.73 0.00 46.40 2.78
607 609 2.167693 AGTCACGTGAGTTCACTGGAAA 59.832 45.455 20.73 0.00 46.40 3.13
608 610 1.754803 AGTCACGTGAGTTCACTGGAA 59.245 47.619 20.73 0.00 46.40 3.53
609 611 1.067060 CAGTCACGTGAGTTCACTGGA 59.933 52.381 23.14 5.00 46.40 3.86
610 612 1.491670 CAGTCACGTGAGTTCACTGG 58.508 55.000 23.14 7.42 46.40 4.00
612 614 0.747255 AGCAGTCACGTGAGTTCACT 59.253 50.000 23.14 16.94 46.40 3.41
613 615 2.417339 TAGCAGTCACGTGAGTTCAC 57.583 50.000 23.14 15.06 46.40 3.18
614 616 2.296190 ACATAGCAGTCACGTGAGTTCA 59.704 45.455 23.14 11.40 46.40 3.18
615 617 2.663602 CACATAGCAGTCACGTGAGTTC 59.336 50.000 23.14 18.51 46.40 3.01
619 621 0.389817 GCCACATAGCAGTCACGTGA 60.390 55.000 15.76 15.76 0.00 4.35
656 658 2.083774 CGTTGCAGTATTGGTGTCCAT 58.916 47.619 0.00 0.00 31.53 3.41
683 685 0.600255 CCTGACCTTGGTGTGACGTC 60.600 60.000 9.11 9.11 0.00 4.34
692 694 1.077212 CCATCTGGCCTGACCTTGG 60.077 63.158 15.36 14.73 40.22 3.61
697 699 1.222936 CTGGACCATCTGGCCTGAC 59.777 63.158 15.36 1.83 39.32 3.51
760 786 2.255316 CTCTTCGTCGCTTCTCTTTCC 58.745 52.381 0.00 0.00 0.00 3.13
886 923 2.708514 CTTTTAATGCGTGATGAGGCG 58.291 47.619 0.00 0.00 35.65 5.52
887 924 2.454055 GCTTTTAATGCGTGATGAGGC 58.546 47.619 0.00 0.00 0.00 4.70
954 994 2.637382 TGAGTTGGGTGATCTGCAGTAA 59.363 45.455 14.67 0.00 0.00 2.24
1238 1287 5.366829 AACAAATTAAAGGACGGCAGTAC 57.633 39.130 0.00 0.00 0.00 2.73
1239 1288 6.394025 AAAACAAATTAAAGGACGGCAGTA 57.606 33.333 0.00 0.00 0.00 2.74
1240 1289 4.929819 AAACAAATTAAAGGACGGCAGT 57.070 36.364 0.00 0.00 0.00 4.40
1241 1290 6.144886 GGTTAAAACAAATTAAAGGACGGCAG 59.855 38.462 0.00 0.00 0.00 4.85
1308 1610 4.022589 CCCGTGAAACAGTAACAGAGTAGA 60.023 45.833 0.00 0.00 35.74 2.59
1367 1690 4.702131 AGAAAAGGCTGAATCCATGTACAC 59.298 41.667 0.00 0.00 0.00 2.90
1432 1767 2.171003 GTAGGGAGGCAGCAAAATGTT 58.829 47.619 0.00 0.00 0.00 2.71
1449 1784 0.537188 ACCTGGCAGGATTCACGTAG 59.463 55.000 38.99 9.52 37.67 3.51
1664 1999 3.208747 CCAGACCTGGTTAACTTGTGT 57.791 47.619 0.00 0.00 45.53 3.72
1709 2044 8.548721 ACTTTCACGTTTCAGAATAACAAGTAG 58.451 33.333 0.00 0.00 0.00 2.57
1712 2047 9.878599 ATAACTTTCACGTTTCAGAATAACAAG 57.121 29.630 0.00 0.00 0.00 3.16
1728 2063 9.696917 ATGAAGAAATCAAACCATAACTTTCAC 57.303 29.630 0.00 0.00 42.54 3.18
1787 2373 6.480320 TGAAGTTTCTAGCAGTCAGAGAAAAC 59.520 38.462 0.00 0.00 40.04 2.43
1945 2531 1.614051 CCAACCACATAGCAGCCAGAA 60.614 52.381 0.00 0.00 0.00 3.02
1990 2576 1.098050 GCCCAAATGAGTAGGCACAG 58.902 55.000 0.00 0.00 45.07 3.66
2094 2807 3.013219 GACCTGAGGAGAAGGCAAATTC 58.987 50.000 4.99 0.00 38.48 2.17
2176 2889 0.249868 CTCTTCAGTGTGGCGTCCAA 60.250 55.000 0.00 0.00 34.18 3.53
2262 2982 4.391830 CGCAGAACTCTTTATTAACTGGCA 59.608 41.667 0.00 0.00 0.00 4.92
2722 3509 1.071605 GGTCTCTGAACGCACATCAC 58.928 55.000 0.00 0.00 0.00 3.06
2839 3641 2.185387 GCTTCCTGGTTCACCTACCTA 58.815 52.381 0.00 0.00 39.04 3.08
2840 3642 0.984995 GCTTCCTGGTTCACCTACCT 59.015 55.000 0.00 0.00 39.04 3.08
2841 3643 0.984995 AGCTTCCTGGTTCACCTACC 59.015 55.000 0.00 0.00 38.73 3.18
2842 3644 2.100605 CAGCTTCCTGGTTCACCTAC 57.899 55.000 0.00 0.00 35.38 3.18
2914 3720 1.339055 TGCACCAAATCGAAGCTAGCT 60.339 47.619 12.68 12.68 0.00 3.32
2973 3779 4.024556 CGGCAAGATGATAGAAATGGACAC 60.025 45.833 0.00 0.00 0.00 3.67
3037 3843 5.705905 AGTTATTGTGTGGCTCTTACCTTTC 59.294 40.000 0.00 0.00 0.00 2.62
3050 3856 7.594758 CAGACCAAACCAATAAGTTATTGTGTG 59.405 37.037 26.39 20.83 43.05 3.82
3076 3882 7.941919 AGTTTCCCAAAGTCAATAGAAAGAAC 58.058 34.615 0.00 0.00 0.00 3.01
3126 3932 4.457810 CGAGCGTAATTAATCAATGCCAG 58.542 43.478 10.01 3.53 0.00 4.85
3143 3950 1.353103 GGCATGAATCAACCGAGCG 59.647 57.895 0.00 0.00 0.00 5.03
3144 3951 1.002033 GATGGCATGAATCAACCGAGC 60.002 52.381 3.81 0.00 0.00 5.03
3149 3956 4.023107 CAGATGAGGATGGCATGAATCAAC 60.023 45.833 3.81 5.11 0.00 3.18
3160 3967 5.604758 TCAGTAGAAACAGATGAGGATGG 57.395 43.478 0.00 0.00 0.00 3.51
3170 3977 8.188799 TCCTCGTACATTAATCAGTAGAAACAG 58.811 37.037 0.00 0.00 0.00 3.16
3173 3980 7.652105 GCATCCTCGTACATTAATCAGTAGAAA 59.348 37.037 0.00 0.00 0.00 2.52
3174 3981 7.145985 GCATCCTCGTACATTAATCAGTAGAA 58.854 38.462 0.00 0.00 0.00 2.10
3175 3982 6.264518 TGCATCCTCGTACATTAATCAGTAGA 59.735 38.462 0.00 0.00 0.00 2.59
3176 3983 6.447162 TGCATCCTCGTACATTAATCAGTAG 58.553 40.000 0.00 0.00 0.00 2.57
3177 3984 6.399639 TGCATCCTCGTACATTAATCAGTA 57.600 37.500 0.00 0.00 0.00 2.74
3178 3985 5.276461 TGCATCCTCGTACATTAATCAGT 57.724 39.130 0.00 0.00 0.00 3.41
3179 3986 5.928264 TCATGCATCCTCGTACATTAATCAG 59.072 40.000 0.00 0.00 0.00 2.90
3180 3987 5.696270 GTCATGCATCCTCGTACATTAATCA 59.304 40.000 0.00 0.00 0.00 2.57
3181 3988 5.696270 TGTCATGCATCCTCGTACATTAATC 59.304 40.000 0.00 0.00 0.00 1.75
3182 3989 5.610398 TGTCATGCATCCTCGTACATTAAT 58.390 37.500 0.00 0.00 0.00 1.40
3183 3990 5.017294 TGTCATGCATCCTCGTACATTAA 57.983 39.130 0.00 0.00 0.00 1.40
3184 3991 4.664150 TGTCATGCATCCTCGTACATTA 57.336 40.909 0.00 0.00 0.00 1.90
3185 3992 3.541996 TGTCATGCATCCTCGTACATT 57.458 42.857 0.00 0.00 0.00 2.71
3186 3993 3.657634 GATGTCATGCATCCTCGTACAT 58.342 45.455 15.24 0.24 46.26 2.29
3187 3994 3.097877 GATGTCATGCATCCTCGTACA 57.902 47.619 15.24 0.00 46.26 2.90
3278 4085 4.043059 AGACCACCTGAGACACTACTAAGA 59.957 45.833 0.00 0.00 0.00 2.10
3283 4090 3.555168 CCAAAGACCACCTGAGACACTAC 60.555 52.174 0.00 0.00 0.00 2.73
3287 4094 0.764890 CCCAAAGACCACCTGAGACA 59.235 55.000 0.00 0.00 0.00 3.41
3322 4129 0.966875 GATCCATGTGCTGTTGGCCA 60.967 55.000 0.00 0.00 40.92 5.36
3327 4134 4.033709 ACTACTAGGATCCATGTGCTGTT 58.966 43.478 15.82 0.00 0.00 3.16
3398 4228 3.911137 TCGAGCTGCGAGATGACT 58.089 55.556 0.00 0.00 45.59 3.41
3409 4239 0.459934 GAGCTTCATGCAGTCGAGCT 60.460 55.000 14.18 14.18 45.63 4.09
3444 4274 2.175715 GGCCATCAGGGGTTAGAAGAAT 59.824 50.000 0.00 0.00 37.04 2.40
3460 4290 2.042639 GCATGAACCAGGGGCCAT 60.043 61.111 4.39 0.00 0.00 4.40
3464 4294 0.465097 CTAGCAGCATGAACCAGGGG 60.465 60.000 0.00 0.00 39.69 4.79
3525 4356 1.227342 ACATGATGTGTGCGTGCGAA 61.227 50.000 0.00 0.00 40.28 4.70
3531 4362 0.109643 CCACCAACATGATGTGTGCG 60.110 55.000 14.80 8.01 41.14 5.34
3555 4386 0.321671 TTCCCTTCTTGGTGCTCTCG 59.678 55.000 0.00 0.00 0.00 4.04
3597 4428 1.415659 CAGAGGCAGAGGGAATGTAGG 59.584 57.143 0.00 0.00 0.00 3.18
3598 4429 2.114616 ACAGAGGCAGAGGGAATGTAG 58.885 52.381 0.00 0.00 0.00 2.74
3602 4433 1.558756 CAGAACAGAGGCAGAGGGAAT 59.441 52.381 0.00 0.00 0.00 3.01
3609 4440 2.684881 ACACAAAACAGAACAGAGGCAG 59.315 45.455 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.