Multiple sequence alignment - TraesCS5A01G303200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G303200 chr5A 100.000 4245 0 0 1 4245 512424111 512419867 0.000000e+00 7840.0
1 TraesCS5A01G303200 chr5A 75.788 2094 333 99 979 2983 512454341 512452333 0.000000e+00 898.0
2 TraesCS5A01G303200 chr5A 84.211 190 28 2 421 609 412183696 412183508 2.610000e-42 183.0
3 TraesCS5A01G303200 chr5B 97.156 2356 65 2 1035 3390 487833484 487831131 0.000000e+00 3978.0
4 TraesCS5A01G303200 chr5B 77.623 2087 319 81 979 2983 487920122 487918102 0.000000e+00 1131.0
5 TraesCS5A01G303200 chr5B 97.028 471 11 2 3778 4245 487831117 487830647 0.000000e+00 789.0
6 TraesCS5A01G303200 chr5B 95.427 328 6 7 643 964 487834224 487833900 8.140000e-142 514.0
7 TraesCS5A01G303200 chr5D 97.574 1855 36 7 2395 4245 406828147 406826298 0.000000e+00 3168.0
8 TraesCS5A01G303200 chr5D 93.196 1308 64 11 1051 2346 406829451 406828157 0.000000e+00 1899.0
9 TraesCS5A01G303200 chr5D 77.874 2088 318 83 979 2983 406953579 406951553 0.000000e+00 1164.0
10 TraesCS5A01G303200 chr5D 87.367 1037 84 17 2580 3602 406897665 406896662 0.000000e+00 1146.0
11 TraesCS5A01G303200 chr5D 92.710 535 21 15 397 920 406830378 406829851 0.000000e+00 756.0
12 TraesCS5A01G303200 chr5D 81.122 196 34 3 2092 2284 406897955 406897760 2.040000e-33 154.0
13 TraesCS5A01G303200 chr5D 84.034 119 14 3 2296 2410 406897787 406897670 4.490000e-20 110.0
14 TraesCS5A01G303200 chr6D 95.349 301 13 1 103 402 427001964 427001664 1.070000e-130 477.0
15 TraesCS5A01G303200 chr6B 86.971 307 35 4 3735 4037 367380979 367380674 1.460000e-89 340.0
16 TraesCS5A01G303200 chr6B 91.667 72 6 0 100 171 634500513 634500584 2.700000e-17 100.0
17 TraesCS5A01G303200 chr2D 86.735 294 39 0 103 396 330094085 330094378 1.140000e-85 327.0
18 TraesCS5A01G303200 chr1D 81.095 201 35 3 419 618 203157602 203157800 1.580000e-34 158.0
19 TraesCS5A01G303200 chr2B 94.030 67 4 0 100 166 767694741 767694675 7.510000e-18 102.0
20 TraesCS5A01G303200 chr3B 76.684 193 37 6 421 609 50529751 50529563 2.700000e-17 100.0
21 TraesCS5A01G303200 chr4D 90.476 42 2 2 3483 3522 241800553 241800594 2.000000e-03 54.7
22 TraesCS5A01G303200 chr4A 100.000 28 0 0 3483 3510 356551411 356551384 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G303200 chr5A 512419867 512424111 4244 True 7840.000000 7840 100.000000 1 4245 1 chr5A.!!$R2 4244
1 TraesCS5A01G303200 chr5A 512452333 512454341 2008 True 898.000000 898 75.788000 979 2983 1 chr5A.!!$R3 2004
2 TraesCS5A01G303200 chr5B 487830647 487834224 3577 True 1760.333333 3978 96.537000 643 4245 3 chr5B.!!$R2 3602
3 TraesCS5A01G303200 chr5B 487918102 487920122 2020 True 1131.000000 1131 77.623000 979 2983 1 chr5B.!!$R1 2004
4 TraesCS5A01G303200 chr5D 406826298 406830378 4080 True 1941.000000 3168 94.493333 397 4245 3 chr5D.!!$R2 3848
5 TraesCS5A01G303200 chr5D 406951553 406953579 2026 True 1164.000000 1164 77.874000 979 2983 1 chr5D.!!$R1 2004
6 TraesCS5A01G303200 chr5D 406896662 406897955 1293 True 470.000000 1146 84.174333 2092 3602 3 chr5D.!!$R3 1510

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
27 28 0.029300 CAACGTTCCACAACAGCCAG 59.971 55.0 0.00 0.00 32.14 4.85 F
258 259 0.032952 ACTTGACGCTTTACCTCGCA 59.967 50.0 0.00 0.00 0.00 5.10 F
306 307 0.042188 CCTATTTTGCGTCGATGCCG 60.042 55.0 26.06 8.41 37.07 5.69 F
357 358 0.105964 CCGATCGGCCAGGATAACAA 59.894 55.0 23.37 0.00 0.00 2.83 F
368 369 0.179018 GGATAACAATCCTGGCGCCT 60.179 55.0 29.70 3.37 37.73 5.52 F
815 830 0.269173 AAAAATTGACCCCCACCCCA 59.731 50.0 0.00 0.00 0.00 4.96 F
2969 3551 0.390866 TTAGACCGTCGCTCTCGAGT 60.391 55.0 13.13 0.00 46.46 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1538 1912 0.315251 CAGGAGACGTGAACTCTGCA 59.685 55.000 0.00 0.00 35.10 4.41 R
1897 2309 0.322008 GCCACCTCCTGGTTCTTCAG 60.322 60.000 0.00 0.00 46.05 3.02 R
2185 2604 0.843309 TCCTTGCACCAGAGGTTCAA 59.157 50.000 2.14 1.58 36.58 2.69 R
2627 3193 4.705023 TCTTCATCAAGATCGTCAGTACCA 59.295 41.667 0.00 0.00 33.38 3.25 R
2794 3372 2.038863 TTTCCCTGGCTGGTCTTCTA 57.961 50.000 9.73 0.00 0.00 2.10 R
3033 3615 3.389329 CCAGGACTGATATTACACAGGCT 59.611 47.826 0.00 0.00 41.39 4.58 R
4003 4599 2.945008 TCTCCATTGCAAGATTTAGGCG 59.055 45.455 4.94 0.00 0.00 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.553079 GTTTTCTGCAACGTTCCACA 57.447 45.000 0.00 0.00 0.00 4.17
20 21 2.869897 GTTTTCTGCAACGTTCCACAA 58.130 42.857 0.00 0.00 0.00 3.33
21 22 2.553079 TTTCTGCAACGTTCCACAAC 57.447 45.000 0.00 0.00 0.00 3.32
22 23 1.454201 TTCTGCAACGTTCCACAACA 58.546 45.000 0.00 0.00 32.14 3.33
23 24 1.013596 TCTGCAACGTTCCACAACAG 58.986 50.000 0.00 0.00 32.14 3.16
24 25 0.592247 CTGCAACGTTCCACAACAGC 60.592 55.000 0.00 0.00 32.14 4.40
25 26 1.299089 GCAACGTTCCACAACAGCC 60.299 57.895 0.00 0.00 32.14 4.85
26 27 1.999071 GCAACGTTCCACAACAGCCA 61.999 55.000 0.00 0.00 32.14 4.75
27 28 0.029300 CAACGTTCCACAACAGCCAG 59.971 55.000 0.00 0.00 32.14 4.85
28 29 1.101049 AACGTTCCACAACAGCCAGG 61.101 55.000 0.00 0.00 32.14 4.45
29 30 2.908073 CGTTCCACAACAGCCAGGC 61.908 63.158 1.84 1.84 32.14 4.85
30 31 1.827789 GTTCCACAACAGCCAGGCA 60.828 57.895 15.80 0.00 32.14 4.75
31 32 1.827789 TTCCACAACAGCCAGGCAC 60.828 57.895 15.80 0.00 0.00 5.01
32 33 3.663176 CCACAACAGCCAGGCACG 61.663 66.667 15.80 6.79 0.00 5.34
33 34 4.332637 CACAACAGCCAGGCACGC 62.333 66.667 15.80 0.00 0.00 5.34
34 35 4.569180 ACAACAGCCAGGCACGCT 62.569 61.111 15.80 0.00 36.91 5.07
39 40 3.397439 AGCCAGGCACGCTGATCT 61.397 61.111 15.80 0.00 34.56 2.75
40 41 3.200593 GCCAGGCACGCTGATCTG 61.201 66.667 6.55 0.00 0.00 2.90
41 42 3.200593 CCAGGCACGCTGATCTGC 61.201 66.667 14.16 14.16 0.00 4.26
42 43 2.125229 CAGGCACGCTGATCTGCT 60.125 61.111 20.58 6.83 33.63 4.24
43 44 1.142531 CAGGCACGCTGATCTGCTA 59.857 57.895 20.58 0.00 33.63 3.49
44 45 0.875040 CAGGCACGCTGATCTGCTAG 60.875 60.000 20.58 13.97 33.63 3.42
45 46 1.039785 AGGCACGCTGATCTGCTAGA 61.040 55.000 20.58 0.00 33.63 2.43
46 47 0.033228 GGCACGCTGATCTGCTAGAT 59.967 55.000 20.58 2.95 37.73 1.98
47 48 1.539929 GGCACGCTGATCTGCTAGATT 60.540 52.381 20.58 0.00 34.53 2.40
48 49 1.526041 GCACGCTGATCTGCTAGATTG 59.474 52.381 20.58 11.22 34.53 2.67
49 50 2.819115 CACGCTGATCTGCTAGATTGT 58.181 47.619 20.58 8.53 34.53 2.71
50 51 3.193263 CACGCTGATCTGCTAGATTGTT 58.807 45.455 20.58 0.00 34.53 2.83
51 52 3.001026 CACGCTGATCTGCTAGATTGTTG 59.999 47.826 20.58 6.01 34.53 3.33
52 53 2.543012 CGCTGATCTGCTAGATTGTTGG 59.457 50.000 20.58 0.00 34.53 3.77
53 54 2.290093 GCTGATCTGCTAGATTGTTGGC 59.710 50.000 16.60 0.00 34.53 4.52
54 55 3.538591 CTGATCTGCTAGATTGTTGGCA 58.461 45.455 0.00 0.00 34.53 4.92
55 56 4.135306 CTGATCTGCTAGATTGTTGGCAT 58.865 43.478 0.00 0.00 34.53 4.40
56 57 3.881089 TGATCTGCTAGATTGTTGGCATG 59.119 43.478 0.00 0.00 34.53 4.06
57 58 3.354948 TCTGCTAGATTGTTGGCATGT 57.645 42.857 0.00 0.00 34.12 3.21
58 59 3.689347 TCTGCTAGATTGTTGGCATGTT 58.311 40.909 0.00 0.00 34.12 2.71
59 60 4.842574 TCTGCTAGATTGTTGGCATGTTA 58.157 39.130 0.00 0.00 34.12 2.41
60 61 4.877823 TCTGCTAGATTGTTGGCATGTTAG 59.122 41.667 0.00 0.00 34.12 2.34
61 62 3.947196 TGCTAGATTGTTGGCATGTTAGG 59.053 43.478 0.00 0.00 0.00 2.69
62 63 3.243201 GCTAGATTGTTGGCATGTTAGGC 60.243 47.826 0.00 0.00 0.00 3.93
63 64 3.091633 AGATTGTTGGCATGTTAGGCT 57.908 42.857 0.00 0.00 34.73 4.58
64 65 2.756760 AGATTGTTGGCATGTTAGGCTG 59.243 45.455 0.00 0.00 34.73 4.85
65 66 1.993956 TTGTTGGCATGTTAGGCTGT 58.006 45.000 0.00 0.00 34.73 4.40
66 67 1.993956 TGTTGGCATGTTAGGCTGTT 58.006 45.000 0.00 0.00 34.73 3.16
67 68 3.147553 TGTTGGCATGTTAGGCTGTTA 57.852 42.857 0.00 0.00 34.73 2.41
68 69 3.696045 TGTTGGCATGTTAGGCTGTTAT 58.304 40.909 0.00 0.00 34.73 1.89
69 70 4.085733 TGTTGGCATGTTAGGCTGTTATT 58.914 39.130 0.00 0.00 34.73 1.40
70 71 4.526262 TGTTGGCATGTTAGGCTGTTATTT 59.474 37.500 0.00 0.00 34.73 1.40
71 72 4.717233 TGGCATGTTAGGCTGTTATTTG 57.283 40.909 0.00 0.00 34.73 2.32
72 73 3.446873 TGGCATGTTAGGCTGTTATTTGG 59.553 43.478 0.00 0.00 34.73 3.28
73 74 3.181476 GGCATGTTAGGCTGTTATTTGGG 60.181 47.826 0.00 0.00 0.00 4.12
74 75 3.737972 GCATGTTAGGCTGTTATTTGGGC 60.738 47.826 0.00 0.00 0.00 5.36
75 76 2.452505 TGTTAGGCTGTTATTTGGGCC 58.547 47.619 0.00 0.00 44.38 5.80
76 77 2.225142 TGTTAGGCTGTTATTTGGGCCA 60.225 45.455 0.00 0.00 46.23 5.36
77 78 2.829120 GTTAGGCTGTTATTTGGGCCAA 59.171 45.455 16.66 16.66 46.23 4.52
78 79 2.252535 AGGCTGTTATTTGGGCCAAT 57.747 45.000 21.65 12.65 46.23 3.16
79 80 2.550175 AGGCTGTTATTTGGGCCAATT 58.450 42.857 21.65 19.00 46.23 2.32
80 81 2.912295 AGGCTGTTATTTGGGCCAATTT 59.088 40.909 21.65 13.36 46.23 1.82
81 82 3.330405 AGGCTGTTATTTGGGCCAATTTT 59.670 39.130 21.65 10.75 46.23 1.82
82 83 3.439825 GGCTGTTATTTGGGCCAATTTTG 59.560 43.478 21.65 9.62 43.59 2.44
96 97 5.675684 CCAATTTTGGCCTATTAGGTTGT 57.324 39.130 11.38 0.00 42.21 3.32
97 98 6.048732 CCAATTTTGGCCTATTAGGTTGTT 57.951 37.500 11.38 0.00 42.21 2.83
98 99 6.472016 CCAATTTTGGCCTATTAGGTTGTTT 58.528 36.000 11.38 0.00 42.21 2.83
99 100 6.593770 CCAATTTTGGCCTATTAGGTTGTTTC 59.406 38.462 11.38 0.00 42.21 2.78
100 101 7.386059 CAATTTTGGCCTATTAGGTTGTTTCT 58.614 34.615 11.38 0.00 37.80 2.52
101 102 6.987403 TTTTGGCCTATTAGGTTGTTTCTT 57.013 33.333 11.38 0.00 37.80 2.52
102 103 8.658840 ATTTTGGCCTATTAGGTTGTTTCTTA 57.341 30.769 11.38 0.00 37.80 2.10
103 104 7.696992 TTTGGCCTATTAGGTTGTTTCTTAG 57.303 36.000 11.38 0.00 37.80 2.18
104 105 5.751586 TGGCCTATTAGGTTGTTTCTTAGG 58.248 41.667 11.38 0.00 37.80 2.69
105 106 5.131067 GGCCTATTAGGTTGTTTCTTAGGG 58.869 45.833 11.38 0.00 37.80 3.53
106 107 4.579340 GCCTATTAGGTTGTTTCTTAGGGC 59.421 45.833 11.38 0.00 37.80 5.19
107 108 5.751586 CCTATTAGGTTGTTTCTTAGGGCA 58.248 41.667 1.17 0.00 0.00 5.36
108 109 6.365520 CCTATTAGGTTGTTTCTTAGGGCAT 58.634 40.000 1.17 0.00 0.00 4.40
109 110 6.833933 CCTATTAGGTTGTTTCTTAGGGCATT 59.166 38.462 1.17 0.00 0.00 3.56
110 111 7.342026 CCTATTAGGTTGTTTCTTAGGGCATTT 59.658 37.037 1.17 0.00 0.00 2.32
111 112 6.987403 TTAGGTTGTTTCTTAGGGCATTTT 57.013 33.333 0.00 0.00 0.00 1.82
112 113 5.468540 AGGTTGTTTCTTAGGGCATTTTC 57.531 39.130 0.00 0.00 0.00 2.29
113 114 4.898861 AGGTTGTTTCTTAGGGCATTTTCA 59.101 37.500 0.00 0.00 0.00 2.69
114 115 5.365314 AGGTTGTTTCTTAGGGCATTTTCAA 59.635 36.000 0.00 0.00 0.00 2.69
115 116 6.043127 AGGTTGTTTCTTAGGGCATTTTCAAT 59.957 34.615 0.00 0.00 0.00 2.57
116 117 6.147656 GGTTGTTTCTTAGGGCATTTTCAATG 59.852 38.462 0.00 0.00 0.00 2.82
117 118 5.237048 TGTTTCTTAGGGCATTTTCAATGC 58.763 37.500 12.21 12.21 43.85 3.56
118 119 5.221601 TGTTTCTTAGGGCATTTTCAATGCA 60.222 36.000 20.19 0.00 46.21 3.96
119 120 4.724074 TCTTAGGGCATTTTCAATGCAG 57.276 40.909 20.19 10.73 46.21 4.41
120 121 3.448301 TCTTAGGGCATTTTCAATGCAGG 59.552 43.478 20.19 4.05 46.21 4.85
121 122 0.906775 AGGGCATTTTCAATGCAGGG 59.093 50.000 20.19 0.00 46.21 4.45
122 123 0.745486 GGGCATTTTCAATGCAGGGC 60.745 55.000 20.19 5.59 46.21 5.19
123 124 1.085501 GGCATTTTCAATGCAGGGCG 61.086 55.000 20.19 0.00 46.21 6.13
124 125 1.698714 GCATTTTCAATGCAGGGCGC 61.699 55.000 15.11 0.00 44.00 6.53
125 126 1.085501 CATTTTCAATGCAGGGCGCC 61.086 55.000 21.18 21.18 41.33 6.53
126 127 1.259840 ATTTTCAATGCAGGGCGCCT 61.260 50.000 28.56 9.77 41.33 5.52
141 142 2.818132 CCTGGAGAGGCGCTTAGG 59.182 66.667 7.64 0.00 30.52 2.69
142 143 1.758514 CCTGGAGAGGCGCTTAGGA 60.759 63.158 7.64 0.00 34.78 2.94
143 144 1.330655 CCTGGAGAGGCGCTTAGGAA 61.331 60.000 7.64 0.00 34.78 3.36
144 145 0.537188 CTGGAGAGGCGCTTAGGAAA 59.463 55.000 7.64 0.00 0.00 3.13
145 146 0.981183 TGGAGAGGCGCTTAGGAAAA 59.019 50.000 7.64 0.00 0.00 2.29
146 147 1.559682 TGGAGAGGCGCTTAGGAAAAT 59.440 47.619 7.64 0.00 0.00 1.82
147 148 2.769663 TGGAGAGGCGCTTAGGAAAATA 59.230 45.455 7.64 0.00 0.00 1.40
148 149 3.199071 TGGAGAGGCGCTTAGGAAAATAA 59.801 43.478 7.64 0.00 0.00 1.40
149 150 4.196971 GGAGAGGCGCTTAGGAAAATAAA 58.803 43.478 7.64 0.00 0.00 1.40
150 151 4.638865 GGAGAGGCGCTTAGGAAAATAAAA 59.361 41.667 7.64 0.00 0.00 1.52
151 152 5.299531 GGAGAGGCGCTTAGGAAAATAAAAT 59.700 40.000 7.64 0.00 0.00 1.82
152 153 6.485648 GGAGAGGCGCTTAGGAAAATAAAATA 59.514 38.462 7.64 0.00 0.00 1.40
153 154 7.012989 GGAGAGGCGCTTAGGAAAATAAAATAA 59.987 37.037 7.64 0.00 0.00 1.40
154 155 8.288689 AGAGGCGCTTAGGAAAATAAAATAAA 57.711 30.769 7.64 0.00 0.00 1.40
155 156 8.914011 AGAGGCGCTTAGGAAAATAAAATAAAT 58.086 29.630 7.64 0.00 0.00 1.40
156 157 8.871686 AGGCGCTTAGGAAAATAAAATAAATG 57.128 30.769 7.64 0.00 0.00 2.32
157 158 8.474831 AGGCGCTTAGGAAAATAAAATAAATGT 58.525 29.630 7.64 0.00 0.00 2.71
158 159 8.752254 GGCGCTTAGGAAAATAAAATAAATGTC 58.248 33.333 7.64 0.00 0.00 3.06
159 160 8.752254 GCGCTTAGGAAAATAAAATAAATGTCC 58.248 33.333 0.00 0.00 0.00 4.02
178 179 9.755122 AAATGTCCTAGAATTAAAAGCTAACCT 57.245 29.630 0.00 0.00 0.00 3.50
179 180 9.755122 AATGTCCTAGAATTAAAAGCTAACCTT 57.245 29.630 0.00 0.00 34.51 3.50
181 182 9.886132 TGTCCTAGAATTAAAAGCTAACCTTAG 57.114 33.333 0.00 0.00 32.20 2.18
190 191 1.854227 GCTAACCTTAGCGCCTACTG 58.146 55.000 2.29 0.00 45.65 2.74
191 192 1.854227 CTAACCTTAGCGCCTACTGC 58.146 55.000 2.29 0.00 0.00 4.40
192 193 1.409427 CTAACCTTAGCGCCTACTGCT 59.591 52.381 2.29 0.00 46.29 4.24
193 194 0.175989 AACCTTAGCGCCTACTGCTC 59.824 55.000 2.29 0.00 42.85 4.26
194 195 1.068250 CCTTAGCGCCTACTGCTCC 59.932 63.158 2.29 0.00 42.85 4.70
195 196 1.676678 CCTTAGCGCCTACTGCTCCA 61.677 60.000 2.29 0.00 42.85 3.86
196 197 0.175760 CTTAGCGCCTACTGCTCCAA 59.824 55.000 2.29 0.00 42.85 3.53
197 198 0.830648 TTAGCGCCTACTGCTCCAAT 59.169 50.000 2.29 0.00 42.85 3.16
198 199 0.389391 TAGCGCCTACTGCTCCAATC 59.611 55.000 2.29 0.00 42.85 2.67
199 200 1.889573 GCGCCTACTGCTCCAATCC 60.890 63.158 0.00 0.00 38.05 3.01
200 201 1.826024 CGCCTACTGCTCCAATCCT 59.174 57.895 0.00 0.00 38.05 3.24
201 202 1.040646 CGCCTACTGCTCCAATCCTA 58.959 55.000 0.00 0.00 38.05 2.94
202 203 1.412710 CGCCTACTGCTCCAATCCTAA 59.587 52.381 0.00 0.00 38.05 2.69
203 204 2.158957 CGCCTACTGCTCCAATCCTAAA 60.159 50.000 0.00 0.00 38.05 1.85
204 205 3.495100 CGCCTACTGCTCCAATCCTAAAT 60.495 47.826 0.00 0.00 38.05 1.40
205 206 3.817647 GCCTACTGCTCCAATCCTAAATG 59.182 47.826 0.00 0.00 36.87 2.32
206 207 3.817647 CCTACTGCTCCAATCCTAAATGC 59.182 47.826 0.00 0.00 0.00 3.56
207 208 3.659183 ACTGCTCCAATCCTAAATGCT 57.341 42.857 0.00 0.00 0.00 3.79
208 209 4.778213 ACTGCTCCAATCCTAAATGCTA 57.222 40.909 0.00 0.00 0.00 3.49
209 210 5.116084 ACTGCTCCAATCCTAAATGCTAA 57.884 39.130 0.00 0.00 0.00 3.09
210 211 5.699143 ACTGCTCCAATCCTAAATGCTAAT 58.301 37.500 0.00 0.00 0.00 1.73
211 212 5.767168 ACTGCTCCAATCCTAAATGCTAATC 59.233 40.000 0.00 0.00 0.00 1.75
212 213 5.693961 TGCTCCAATCCTAAATGCTAATCA 58.306 37.500 0.00 0.00 0.00 2.57
213 214 5.532406 TGCTCCAATCCTAAATGCTAATCAC 59.468 40.000 0.00 0.00 0.00 3.06
214 215 5.334414 GCTCCAATCCTAAATGCTAATCACG 60.334 44.000 0.00 0.00 0.00 4.35
215 216 5.063204 TCCAATCCTAAATGCTAATCACGG 58.937 41.667 0.00 0.00 0.00 4.94
216 217 4.216257 CCAATCCTAAATGCTAATCACGGG 59.784 45.833 0.00 0.00 0.00 5.28
217 218 2.846193 TCCTAAATGCTAATCACGGGC 58.154 47.619 0.00 0.00 0.00 6.13
218 219 1.531149 CCTAAATGCTAATCACGGGCG 59.469 52.381 0.00 0.00 0.00 6.13
219 220 0.941542 TAAATGCTAATCACGGGCGC 59.058 50.000 0.00 0.00 0.00 6.53
220 221 0.748005 AAATGCTAATCACGGGCGCT 60.748 50.000 7.64 0.00 0.00 5.92
221 222 1.439353 AATGCTAATCACGGGCGCTG 61.439 55.000 7.64 2.40 0.00 5.18
222 223 2.202878 GCTAATCACGGGCGCTGA 60.203 61.111 7.64 3.26 0.00 4.26
223 224 1.813753 GCTAATCACGGGCGCTGAA 60.814 57.895 7.64 0.00 0.00 3.02
224 225 1.366111 GCTAATCACGGGCGCTGAAA 61.366 55.000 7.64 0.00 0.00 2.69
225 226 1.299541 CTAATCACGGGCGCTGAAAT 58.700 50.000 7.64 0.00 0.00 2.17
226 227 2.479837 CTAATCACGGGCGCTGAAATA 58.520 47.619 7.64 0.96 0.00 1.40
227 228 1.745232 AATCACGGGCGCTGAAATAA 58.255 45.000 7.64 0.00 0.00 1.40
228 229 1.014352 ATCACGGGCGCTGAAATAAC 58.986 50.000 7.64 0.00 0.00 1.89
229 230 1.022451 TCACGGGCGCTGAAATAACC 61.022 55.000 7.64 0.00 0.00 2.85
230 231 1.024579 CACGGGCGCTGAAATAACCT 61.025 55.000 7.64 0.00 0.00 3.50
231 232 1.024579 ACGGGCGCTGAAATAACCTG 61.025 55.000 7.64 0.00 0.00 4.00
232 233 1.433471 GGGCGCTGAAATAACCTGC 59.567 57.895 7.64 0.00 0.00 4.85
233 234 1.433471 GGCGCTGAAATAACCTGCC 59.567 57.895 7.64 0.00 0.00 4.85
234 235 1.062525 GCGCTGAAATAACCTGCCG 59.937 57.895 0.00 0.00 0.00 5.69
235 236 1.062525 CGCTGAAATAACCTGCCGC 59.937 57.895 0.00 0.00 0.00 6.53
236 237 1.433471 GCTGAAATAACCTGCCGCC 59.567 57.895 0.00 0.00 0.00 6.13
237 238 1.312371 GCTGAAATAACCTGCCGCCA 61.312 55.000 0.00 0.00 0.00 5.69
238 239 0.451783 CTGAAATAACCTGCCGCCAC 59.548 55.000 0.00 0.00 0.00 5.01
239 240 0.250945 TGAAATAACCTGCCGCCACA 60.251 50.000 0.00 0.00 0.00 4.17
240 241 0.170339 GAAATAACCTGCCGCCACAC 59.830 55.000 0.00 0.00 0.00 3.82
241 242 0.251165 AAATAACCTGCCGCCACACT 60.251 50.000 0.00 0.00 0.00 3.55
242 243 0.251165 AATAACCTGCCGCCACACTT 60.251 50.000 0.00 0.00 0.00 3.16
243 244 0.960364 ATAACCTGCCGCCACACTTG 60.960 55.000 0.00 0.00 0.00 3.16
244 245 2.046009 TAACCTGCCGCCACACTTGA 62.046 55.000 0.00 0.00 0.00 3.02
245 246 3.357079 CCTGCCGCCACACTTGAC 61.357 66.667 0.00 0.00 0.00 3.18
246 247 3.716006 CTGCCGCCACACTTGACG 61.716 66.667 0.00 0.00 0.00 4.35
249 250 2.972505 CCGCCACACTTGACGCTT 60.973 61.111 0.00 0.00 0.00 4.68
250 251 2.542907 CCGCCACACTTGACGCTTT 61.543 57.895 0.00 0.00 0.00 3.51
251 252 1.225376 CCGCCACACTTGACGCTTTA 61.225 55.000 0.00 0.00 0.00 1.85
252 253 0.110823 CGCCACACTTGACGCTTTAC 60.111 55.000 0.00 0.00 0.00 2.01
253 254 0.237498 GCCACACTTGACGCTTTACC 59.763 55.000 0.00 0.00 0.00 2.85
254 255 1.878953 CCACACTTGACGCTTTACCT 58.121 50.000 0.00 0.00 0.00 3.08
255 256 1.798813 CCACACTTGACGCTTTACCTC 59.201 52.381 0.00 0.00 0.00 3.85
256 257 1.455786 CACACTTGACGCTTTACCTCG 59.544 52.381 0.00 0.00 0.00 4.63
257 258 0.438830 CACTTGACGCTTTACCTCGC 59.561 55.000 0.00 0.00 0.00 5.03
258 259 0.032952 ACTTGACGCTTTACCTCGCA 59.967 50.000 0.00 0.00 0.00 5.10
259 260 0.438830 CTTGACGCTTTACCTCGCAC 59.561 55.000 0.00 0.00 0.00 5.34
260 261 1.279527 TTGACGCTTTACCTCGCACG 61.280 55.000 0.00 0.00 0.00 5.34
261 262 2.431942 ACGCTTTACCTCGCACGG 60.432 61.111 0.00 0.00 0.00 4.94
262 263 3.849953 CGCTTTACCTCGCACGGC 61.850 66.667 0.00 0.00 0.00 5.68
263 264 2.740826 GCTTTACCTCGCACGGCA 60.741 61.111 0.00 0.00 0.00 5.69
264 265 2.322081 GCTTTACCTCGCACGGCAA 61.322 57.895 0.00 0.00 0.00 4.52
265 266 1.847890 GCTTTACCTCGCACGGCAAA 61.848 55.000 0.00 0.00 0.00 3.68
266 267 0.589223 CTTTACCTCGCACGGCAAAA 59.411 50.000 0.00 0.00 0.00 2.44
267 268 0.308376 TTTACCTCGCACGGCAAAAC 59.692 50.000 0.00 0.00 0.00 2.43
268 269 0.814410 TTACCTCGCACGGCAAAACA 60.814 50.000 0.00 0.00 0.00 2.83
269 270 0.814410 TACCTCGCACGGCAAAACAA 60.814 50.000 0.00 0.00 0.00 2.83
270 271 1.064946 CCTCGCACGGCAAAACAAA 59.935 52.632 0.00 0.00 0.00 2.83
271 272 0.934436 CCTCGCACGGCAAAACAAAG 60.934 55.000 0.00 0.00 0.00 2.77
272 273 1.539776 CTCGCACGGCAAAACAAAGC 61.540 55.000 0.00 0.00 0.00 3.51
279 280 1.276547 GCAAAACAAAGCCAAGCGC 59.723 52.632 0.00 0.00 37.98 5.92
289 290 3.764466 CCAAGCGCTCGACTCCCT 61.764 66.667 12.06 0.00 0.00 4.20
290 291 2.415608 CCAAGCGCTCGACTCCCTA 61.416 63.158 12.06 0.00 0.00 3.53
291 292 1.736586 CAAGCGCTCGACTCCCTAT 59.263 57.895 12.06 0.00 0.00 2.57
292 293 0.103208 CAAGCGCTCGACTCCCTATT 59.897 55.000 12.06 0.00 0.00 1.73
293 294 0.824759 AAGCGCTCGACTCCCTATTT 59.175 50.000 12.06 0.00 0.00 1.40
294 295 0.824759 AGCGCTCGACTCCCTATTTT 59.175 50.000 2.64 0.00 0.00 1.82
295 296 0.931005 GCGCTCGACTCCCTATTTTG 59.069 55.000 0.00 0.00 0.00 2.44
296 297 0.931005 CGCTCGACTCCCTATTTTGC 59.069 55.000 0.00 0.00 0.00 3.68
297 298 0.931005 GCTCGACTCCCTATTTTGCG 59.069 55.000 0.00 0.00 0.00 4.85
298 299 1.739371 GCTCGACTCCCTATTTTGCGT 60.739 52.381 0.00 0.00 0.00 5.24
299 300 2.194271 CTCGACTCCCTATTTTGCGTC 58.806 52.381 0.00 0.00 0.00 5.19
300 301 0.921347 CGACTCCCTATTTTGCGTCG 59.079 55.000 0.00 0.00 38.31 5.12
301 302 1.468565 CGACTCCCTATTTTGCGTCGA 60.469 52.381 0.00 0.00 44.81 4.20
302 303 2.798499 CGACTCCCTATTTTGCGTCGAT 60.798 50.000 0.00 0.00 44.81 3.59
303 304 2.540101 GACTCCCTATTTTGCGTCGATG 59.460 50.000 0.00 0.00 0.00 3.84
304 305 1.261619 CTCCCTATTTTGCGTCGATGC 59.738 52.381 22.77 22.77 0.00 3.91
305 306 0.307760 CCCTATTTTGCGTCGATGCC 59.692 55.000 26.06 9.41 0.00 4.40
306 307 0.042188 CCTATTTTGCGTCGATGCCG 60.042 55.000 26.06 8.41 37.07 5.69
324 325 2.509336 CGTCGAGCGCCAGGATTT 60.509 61.111 2.29 0.00 0.00 2.17
325 326 2.802667 CGTCGAGCGCCAGGATTTG 61.803 63.158 2.29 0.00 0.00 2.32
326 327 1.447838 GTCGAGCGCCAGGATTTGA 60.448 57.895 2.29 0.00 0.00 2.69
327 328 1.153568 TCGAGCGCCAGGATTTGAG 60.154 57.895 2.29 0.00 0.00 3.02
328 329 2.817423 CGAGCGCCAGGATTTGAGC 61.817 63.158 2.29 0.00 0.00 4.26
329 330 2.817423 GAGCGCCAGGATTTGAGCG 61.817 63.158 2.29 0.00 44.21 5.03
331 332 2.821366 CGCCAGGATTTGAGCGCT 60.821 61.111 11.27 11.27 38.79 5.92
332 333 2.401766 CGCCAGGATTTGAGCGCTT 61.402 57.895 13.26 0.00 38.79 4.68
333 334 1.089481 CGCCAGGATTTGAGCGCTTA 61.089 55.000 13.26 3.74 38.79 3.09
334 335 1.094785 GCCAGGATTTGAGCGCTTAA 58.905 50.000 13.26 12.00 0.00 1.85
335 336 1.202188 GCCAGGATTTGAGCGCTTAAC 60.202 52.381 14.90 4.02 0.00 2.01
336 337 2.359900 CCAGGATTTGAGCGCTTAACT 58.640 47.619 14.90 9.49 0.00 2.24
337 338 2.096496 CCAGGATTTGAGCGCTTAACTG 59.904 50.000 14.90 17.11 0.00 3.16
338 339 1.740025 AGGATTTGAGCGCTTAACTGC 59.260 47.619 14.90 14.48 0.00 4.40
339 340 1.202188 GGATTTGAGCGCTTAACTGCC 60.202 52.381 14.90 11.93 0.00 4.85
340 341 0.447801 ATTTGAGCGCTTAACTGCCG 59.552 50.000 14.90 0.00 0.00 5.69
341 342 0.601576 TTTGAGCGCTTAACTGCCGA 60.602 50.000 14.90 0.00 0.00 5.54
342 343 0.391130 TTGAGCGCTTAACTGCCGAT 60.391 50.000 13.26 0.00 0.00 4.18
343 344 0.806102 TGAGCGCTTAACTGCCGATC 60.806 55.000 13.26 0.00 0.00 3.69
344 345 1.812214 GAGCGCTTAACTGCCGATCG 61.812 60.000 13.26 8.51 0.00 3.69
345 346 2.871427 GCGCTTAACTGCCGATCGG 61.871 63.158 30.03 30.03 38.57 4.18
355 356 4.675404 CCGATCGGCCAGGATAAC 57.325 61.111 23.37 0.00 0.00 1.89
356 357 1.745890 CCGATCGGCCAGGATAACA 59.254 57.895 23.37 0.00 0.00 2.41
357 358 0.105964 CCGATCGGCCAGGATAACAA 59.894 55.000 23.37 0.00 0.00 2.83
358 359 1.270839 CCGATCGGCCAGGATAACAAT 60.271 52.381 23.37 0.00 0.00 2.71
359 360 2.069273 CGATCGGCCAGGATAACAATC 58.931 52.381 7.38 0.00 0.00 2.67
360 361 2.427506 GATCGGCCAGGATAACAATCC 58.572 52.381 2.24 0.00 41.02 3.01
367 368 2.331265 GGATAACAATCCTGGCGCC 58.669 57.895 22.73 22.73 37.73 6.53
368 369 0.179018 GGATAACAATCCTGGCGCCT 60.179 55.000 29.70 3.37 37.73 5.52
369 370 1.680338 GATAACAATCCTGGCGCCTT 58.320 50.000 29.70 14.18 0.00 4.35
370 371 1.334869 GATAACAATCCTGGCGCCTTG 59.665 52.381 29.70 24.68 0.00 3.61
371 372 1.312371 TAACAATCCTGGCGCCTTGC 61.312 55.000 29.70 0.05 45.38 4.01
395 396 3.660111 GCCCCGCGTTGGATATGC 61.660 66.667 15.39 0.83 42.00 3.14
529 533 1.338337 CTGGCACGATCCGATTAGAGT 59.662 52.381 0.00 0.00 0.00 3.24
534 538 2.025155 ACGATCCGATTAGAGTGTGCT 58.975 47.619 0.00 0.00 0.00 4.40
536 540 2.033424 CGATCCGATTAGAGTGTGCTGA 59.967 50.000 0.00 0.00 0.00 4.26
540 544 2.458951 CGATTAGAGTGTGCTGAGCTC 58.541 52.381 6.82 6.82 0.00 4.09
563 567 4.107051 GTCATGTGCCGTGCCAGC 62.107 66.667 0.00 0.00 0.00 4.85
613 617 1.007387 CCGTTTGGCCAGCTTTGAC 60.007 57.895 5.11 0.00 0.00 3.18
762 777 2.833794 AGACGAAACTTTAGCAGCACA 58.166 42.857 0.00 0.00 0.00 4.57
800 815 2.996621 CGCAAAATAATCCCGCCAAAAA 59.003 40.909 0.00 0.00 0.00 1.94
802 817 4.094146 CGCAAAATAATCCCGCCAAAAATT 59.906 37.500 0.00 0.00 0.00 1.82
803 818 5.331098 GCAAAATAATCCCGCCAAAAATTG 58.669 37.500 0.00 0.00 0.00 2.32
804 819 5.123027 GCAAAATAATCCCGCCAAAAATTGA 59.877 36.000 0.00 0.00 0.00 2.57
815 830 0.269173 AAAAATTGACCCCCACCCCA 59.731 50.000 0.00 0.00 0.00 4.96
845 860 1.277557 CCCAAAATGATCCCGCCAAAA 59.722 47.619 0.00 0.00 0.00 2.44
942 959 2.278404 CAATCCAATCCCGCCCCA 59.722 61.111 0.00 0.00 0.00 4.96
954 971 1.301244 CGCCCCAATCTCATCTCCG 60.301 63.158 0.00 0.00 0.00 4.63
1322 1687 3.753434 CTGAGCGCGGTCAGGACT 61.753 66.667 44.77 19.05 40.39 3.85
1418 1792 1.767681 GAGACCTTCAGCCTGGATGAT 59.232 52.381 16.35 0.05 0.00 2.45
1496 1870 4.802248 GCCTATGATCAGATCACCTTGTCC 60.802 50.000 15.67 0.00 43.01 4.02
1632 2017 6.777526 CTCCGTTTCTTGAGGATATCATTC 57.222 41.667 4.83 2.46 37.89 2.67
1843 2243 0.911769 CCTGTATCCCCTGTGCTTCA 59.088 55.000 0.00 0.00 0.00 3.02
1897 2309 1.471684 CCATGAGCCTGTTGAAGAAGC 59.528 52.381 0.00 0.00 0.00 3.86
1909 2321 3.131709 TGAAGAAGCTGAAGAACCAGG 57.868 47.619 0.00 0.00 34.82 4.45
1939 2351 1.372683 GACTCTTGGCACCTGCAGA 59.627 57.895 17.39 0.00 44.36 4.26
2185 2604 2.868899 CCAAAAGGACAGCCTCTTCTT 58.131 47.619 0.00 0.00 46.28 2.52
2294 2713 1.882198 CCGATGTTGTGAATGTTCGC 58.118 50.000 0.00 0.00 38.16 4.70
2627 3193 6.923199 ACTGTTGAATCTGATTTCCCATTT 57.077 33.333 4.11 0.00 0.00 2.32
2794 3372 4.080129 AGGTATGATGTCTTCAGCCACATT 60.080 41.667 11.91 0.00 37.89 2.71
2969 3551 0.390866 TTAGACCGTCGCTCTCGAGT 60.391 55.000 13.13 0.00 46.46 4.18
3012 3594 7.287061 TCTGTTTCCCTTCAGTTCAATTAGAA 58.713 34.615 0.00 0.00 33.89 2.10
3457 4050 1.533625 TTCTTCAATTGTCTGGCCCG 58.466 50.000 0.00 0.00 0.00 6.13
3610 4203 3.327757 GGTACCAATCATATCCCTGCAGA 59.672 47.826 17.39 0.00 0.00 4.26
3616 4209 7.932134 ACCAATCATATCCCTGCAGATAAATA 58.068 34.615 17.39 7.46 32.61 1.40
3617 4210 8.563502 ACCAATCATATCCCTGCAGATAAATAT 58.436 33.333 17.39 9.40 32.61 1.28
3618 4211 8.847196 CCAATCATATCCCTGCAGATAAATATG 58.153 37.037 17.39 19.32 32.61 1.78
3709 4302 6.832520 TCCTCTTCTCACTCTATATCATGC 57.167 41.667 0.00 0.00 0.00 4.06
3728 4321 3.374764 TGCTAGTCATCCCTGCTTAAGA 58.625 45.455 6.67 0.00 0.00 2.10
3788 4381 2.500098 TCCTATGTACCACTTGCACCTC 59.500 50.000 0.00 0.00 0.00 3.85
4003 4599 9.520204 TTTCATTTGTTCTCAACAGAAATTCTC 57.480 29.630 0.00 0.00 43.27 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.553079 TGTGGAACGTTGCAGAAAAC 57.447 45.000 23.57 11.34 42.39 2.43
1 2 2.229062 TGTTGTGGAACGTTGCAGAAAA 59.771 40.909 29.02 23.18 42.39 2.29
2 3 1.813178 TGTTGTGGAACGTTGCAGAAA 59.187 42.857 29.02 20.32 42.39 2.52
3 4 1.400142 CTGTTGTGGAACGTTGCAGAA 59.600 47.619 24.93 24.93 42.39 3.02
4 5 1.013596 CTGTTGTGGAACGTTGCAGA 58.986 50.000 23.57 19.53 42.39 4.26
5 6 0.592247 GCTGTTGTGGAACGTTGCAG 60.592 55.000 23.57 11.92 42.39 4.41
7 8 1.299089 GGCTGTTGTGGAACGTTGC 60.299 57.895 13.47 13.47 42.39 4.17
8 9 0.029300 CTGGCTGTTGTGGAACGTTG 59.971 55.000 5.00 0.00 42.39 4.10
9 10 1.101049 CCTGGCTGTTGTGGAACGTT 61.101 55.000 0.00 0.00 42.39 3.99
10 11 1.525995 CCTGGCTGTTGTGGAACGT 60.526 57.895 0.00 0.00 42.39 3.99
11 12 2.908073 GCCTGGCTGTTGTGGAACG 61.908 63.158 12.43 0.00 42.39 3.95
12 13 1.827789 TGCCTGGCTGTTGTGGAAC 60.828 57.895 21.03 0.00 37.35 3.62
13 14 1.827789 GTGCCTGGCTGTTGTGGAA 60.828 57.895 21.03 0.00 0.00 3.53
14 15 2.203337 GTGCCTGGCTGTTGTGGA 60.203 61.111 21.03 0.00 0.00 4.02
15 16 3.663176 CGTGCCTGGCTGTTGTGG 61.663 66.667 21.03 0.00 0.00 4.17
16 17 4.332637 GCGTGCCTGGCTGTTGTG 62.333 66.667 21.03 4.31 0.00 3.33
17 18 4.569180 AGCGTGCCTGGCTGTTGT 62.569 61.111 21.03 0.00 39.77 3.32
22 23 3.397439 AGATCAGCGTGCCTGGCT 61.397 61.111 21.03 0.00 42.05 4.75
23 24 3.200593 CAGATCAGCGTGCCTGGC 61.201 66.667 12.87 12.87 42.05 4.85
24 25 2.302199 TAGCAGATCAGCGTGCCTGG 62.302 60.000 4.27 0.00 42.05 4.45
25 26 0.875040 CTAGCAGATCAGCGTGCCTG 60.875 60.000 4.27 0.00 40.81 4.85
26 27 1.039785 TCTAGCAGATCAGCGTGCCT 61.040 55.000 4.27 0.00 40.81 4.75
27 28 0.033228 ATCTAGCAGATCAGCGTGCC 59.967 55.000 4.27 0.00 40.81 5.01
28 29 1.526041 CAATCTAGCAGATCAGCGTGC 59.474 52.381 4.27 0.22 40.15 5.34
29 30 2.819115 ACAATCTAGCAGATCAGCGTG 58.181 47.619 4.27 2.07 40.15 5.34
30 31 3.193263 CAACAATCTAGCAGATCAGCGT 58.807 45.455 4.27 0.00 40.15 5.07
31 32 2.543012 CCAACAATCTAGCAGATCAGCG 59.457 50.000 4.27 0.00 40.15 5.18
32 33 2.290093 GCCAACAATCTAGCAGATCAGC 59.710 50.000 1.07 1.07 32.89 4.26
33 34 3.538591 TGCCAACAATCTAGCAGATCAG 58.461 45.455 0.00 0.00 32.89 2.90
34 35 3.632643 TGCCAACAATCTAGCAGATCA 57.367 42.857 0.00 0.00 32.89 2.92
35 36 3.881688 ACATGCCAACAATCTAGCAGATC 59.118 43.478 0.00 0.00 38.89 2.75
36 37 3.894759 ACATGCCAACAATCTAGCAGAT 58.105 40.909 0.00 0.00 38.89 2.90
37 38 3.354948 ACATGCCAACAATCTAGCAGA 57.645 42.857 0.00 0.00 38.89 4.26
38 39 4.036027 CCTAACATGCCAACAATCTAGCAG 59.964 45.833 0.00 0.00 38.89 4.24
39 40 3.947196 CCTAACATGCCAACAATCTAGCA 59.053 43.478 0.00 0.00 40.00 3.49
40 41 3.243201 GCCTAACATGCCAACAATCTAGC 60.243 47.826 0.00 0.00 0.00 3.42
41 42 4.036027 CAGCCTAACATGCCAACAATCTAG 59.964 45.833 0.00 0.00 0.00 2.43
42 43 3.947196 CAGCCTAACATGCCAACAATCTA 59.053 43.478 0.00 0.00 0.00 1.98
43 44 2.756760 CAGCCTAACATGCCAACAATCT 59.243 45.455 0.00 0.00 0.00 2.40
44 45 2.493278 ACAGCCTAACATGCCAACAATC 59.507 45.455 0.00 0.00 0.00 2.67
45 46 2.528564 ACAGCCTAACATGCCAACAAT 58.471 42.857 0.00 0.00 0.00 2.71
46 47 1.993956 ACAGCCTAACATGCCAACAA 58.006 45.000 0.00 0.00 0.00 2.83
47 48 1.993956 AACAGCCTAACATGCCAACA 58.006 45.000 0.00 0.00 0.00 3.33
48 49 4.718940 AATAACAGCCTAACATGCCAAC 57.281 40.909 0.00 0.00 0.00 3.77
49 50 4.081752 CCAAATAACAGCCTAACATGCCAA 60.082 41.667 0.00 0.00 0.00 4.52
50 51 3.446873 CCAAATAACAGCCTAACATGCCA 59.553 43.478 0.00 0.00 0.00 4.92
51 52 3.181476 CCCAAATAACAGCCTAACATGCC 60.181 47.826 0.00 0.00 0.00 4.40
52 53 3.737972 GCCCAAATAACAGCCTAACATGC 60.738 47.826 0.00 0.00 0.00 4.06
53 54 3.181476 GGCCCAAATAACAGCCTAACATG 60.181 47.826 0.00 0.00 42.34 3.21
54 55 3.031013 GGCCCAAATAACAGCCTAACAT 58.969 45.455 0.00 0.00 42.34 2.71
55 56 2.225142 TGGCCCAAATAACAGCCTAACA 60.225 45.455 0.00 0.00 45.94 2.41
56 57 2.452505 TGGCCCAAATAACAGCCTAAC 58.547 47.619 0.00 0.00 45.94 2.34
57 58 2.909504 TGGCCCAAATAACAGCCTAA 57.090 45.000 0.00 0.00 45.94 2.69
58 59 2.909504 TTGGCCCAAATAACAGCCTA 57.090 45.000 0.00 0.00 45.94 3.93
59 60 2.252535 ATTGGCCCAAATAACAGCCT 57.747 45.000 0.00 0.00 45.94 4.58
60 61 3.348647 AAATTGGCCCAAATAACAGCC 57.651 42.857 0.00 0.00 45.96 4.85
61 62 3.439825 CCAAAATTGGCCCAAATAACAGC 59.560 43.478 0.00 0.00 42.21 4.40
75 76 7.386059 AGAAACAACCTAATAGGCCAAAATTG 58.614 34.615 5.01 5.00 39.63 2.32
76 77 7.553504 AGAAACAACCTAATAGGCCAAAATT 57.446 32.000 5.01 4.24 39.63 1.82
77 78 7.553504 AAGAAACAACCTAATAGGCCAAAAT 57.446 32.000 5.01 0.00 39.63 1.82
78 79 6.987403 AAGAAACAACCTAATAGGCCAAAA 57.013 33.333 5.01 0.00 39.63 2.44
79 80 6.661805 CCTAAGAAACAACCTAATAGGCCAAA 59.338 38.462 5.01 0.00 39.63 3.28
80 81 6.184789 CCTAAGAAACAACCTAATAGGCCAA 58.815 40.000 5.01 0.00 39.63 4.52
81 82 5.339695 CCCTAAGAAACAACCTAATAGGCCA 60.340 44.000 5.01 0.00 39.63 5.36
82 83 5.131067 CCCTAAGAAACAACCTAATAGGCC 58.869 45.833 6.17 0.00 39.63 5.19
83 84 4.579340 GCCCTAAGAAACAACCTAATAGGC 59.421 45.833 6.17 0.00 39.63 3.93
84 85 5.751586 TGCCCTAAGAAACAACCTAATAGG 58.248 41.667 4.46 4.46 42.49 2.57
85 86 7.881775 AATGCCCTAAGAAACAACCTAATAG 57.118 36.000 0.00 0.00 0.00 1.73
86 87 8.658840 AAAATGCCCTAAGAAACAACCTAATA 57.341 30.769 0.00 0.00 0.00 0.98
87 88 7.234577 TGAAAATGCCCTAAGAAACAACCTAAT 59.765 33.333 0.00 0.00 0.00 1.73
88 89 6.551601 TGAAAATGCCCTAAGAAACAACCTAA 59.448 34.615 0.00 0.00 0.00 2.69
89 90 6.071984 TGAAAATGCCCTAAGAAACAACCTA 58.928 36.000 0.00 0.00 0.00 3.08
90 91 4.898861 TGAAAATGCCCTAAGAAACAACCT 59.101 37.500 0.00 0.00 0.00 3.50
91 92 5.208463 TGAAAATGCCCTAAGAAACAACC 57.792 39.130 0.00 0.00 0.00 3.77
92 93 6.347644 GCATTGAAAATGCCCTAAGAAACAAC 60.348 38.462 12.85 0.00 39.01 3.32
93 94 5.700373 GCATTGAAAATGCCCTAAGAAACAA 59.300 36.000 12.85 0.00 39.01 2.83
94 95 5.221601 TGCATTGAAAATGCCCTAAGAAACA 60.222 36.000 19.30 0.00 43.94 2.83
95 96 5.237048 TGCATTGAAAATGCCCTAAGAAAC 58.763 37.500 19.30 0.00 43.94 2.78
96 97 5.480642 TGCATTGAAAATGCCCTAAGAAA 57.519 34.783 19.30 0.00 43.94 2.52
97 98 4.081531 CCTGCATTGAAAATGCCCTAAGAA 60.082 41.667 19.30 1.66 43.94 2.52
98 99 3.448301 CCTGCATTGAAAATGCCCTAAGA 59.552 43.478 19.30 2.27 43.94 2.10
99 100 3.431207 CCCTGCATTGAAAATGCCCTAAG 60.431 47.826 19.30 11.26 43.94 2.18
100 101 2.500910 CCCTGCATTGAAAATGCCCTAA 59.499 45.455 19.30 3.21 43.94 2.69
101 102 2.109774 CCCTGCATTGAAAATGCCCTA 58.890 47.619 19.30 3.52 43.94 3.53
102 103 0.906775 CCCTGCATTGAAAATGCCCT 59.093 50.000 19.30 0.00 43.94 5.19
103 104 0.745486 GCCCTGCATTGAAAATGCCC 60.745 55.000 19.30 4.91 43.94 5.36
104 105 1.085501 CGCCCTGCATTGAAAATGCC 61.086 55.000 19.30 5.87 43.94 4.40
105 106 1.698714 GCGCCCTGCATTGAAAATGC 61.699 55.000 16.20 16.20 45.45 3.56
106 107 2.375981 GCGCCCTGCATTGAAAATG 58.624 52.632 0.00 0.00 45.45 2.32
107 108 3.434316 CAGGCGCCCTGCATTGAAAAT 62.434 52.381 26.15 0.00 45.13 1.82
108 109 2.157305 CAGGCGCCCTGCATTGAAAA 62.157 55.000 26.15 0.00 45.13 2.29
109 110 2.638354 CAGGCGCCCTGCATTGAAA 61.638 57.895 26.15 0.00 45.13 2.69
110 111 3.063704 CAGGCGCCCTGCATTGAA 61.064 61.111 26.15 0.00 45.13 2.69
124 125 1.330655 TTCCTAAGCGCCTCTCCAGG 61.331 60.000 2.29 1.71 43.82 4.45
125 126 0.537188 TTTCCTAAGCGCCTCTCCAG 59.463 55.000 2.29 0.00 0.00 3.86
126 127 0.981183 TTTTCCTAAGCGCCTCTCCA 59.019 50.000 2.29 0.00 0.00 3.86
127 128 2.333688 ATTTTCCTAAGCGCCTCTCC 57.666 50.000 2.29 0.00 0.00 3.71
128 129 5.813080 TTTTATTTTCCTAAGCGCCTCTC 57.187 39.130 2.29 0.00 0.00 3.20
129 130 7.875327 TTATTTTATTTTCCTAAGCGCCTCT 57.125 32.000 2.29 0.00 0.00 3.69
130 131 8.968242 CATTTATTTTATTTTCCTAAGCGCCTC 58.032 33.333 2.29 0.00 0.00 4.70
131 132 8.474831 ACATTTATTTTATTTTCCTAAGCGCCT 58.525 29.630 2.29 0.00 0.00 5.52
132 133 8.642908 ACATTTATTTTATTTTCCTAAGCGCC 57.357 30.769 2.29 0.00 0.00 6.53
133 134 8.752254 GGACATTTATTTTATTTTCCTAAGCGC 58.248 33.333 0.00 0.00 0.00 5.92
152 153 9.755122 AGGTTAGCTTTTAATTCTAGGACATTT 57.245 29.630 0.00 0.00 0.00 2.32
153 154 9.755122 AAGGTTAGCTTTTAATTCTAGGACATT 57.245 29.630 0.00 0.00 0.00 2.71
155 156 9.886132 CTAAGGTTAGCTTTTAATTCTAGGACA 57.114 33.333 0.92 0.00 0.00 4.02
172 173 1.854227 GCAGTAGGCGCTAAGGTTAG 58.146 55.000 7.64 0.00 0.00 2.34
174 175 4.934989 GCAGTAGGCGCTAAGGTT 57.065 55.556 7.64 0.00 0.00 3.50
176 177 4.440604 ATTGGAGCAGTAGGCGCTAAGG 62.441 54.545 7.64 0.00 45.02 2.69
177 178 1.202580 ATTGGAGCAGTAGGCGCTAAG 60.203 52.381 7.64 0.00 45.02 2.18
183 184 3.560636 TTTAGGATTGGAGCAGTAGGC 57.439 47.619 0.00 0.00 45.30 3.93
184 185 3.817647 GCATTTAGGATTGGAGCAGTAGG 59.182 47.826 0.00 0.00 0.00 3.18
185 186 4.712476 AGCATTTAGGATTGGAGCAGTAG 58.288 43.478 0.00 0.00 0.00 2.57
186 187 4.778213 AGCATTTAGGATTGGAGCAGTA 57.222 40.909 0.00 0.00 0.00 2.74
187 188 3.659183 AGCATTTAGGATTGGAGCAGT 57.341 42.857 0.00 0.00 0.00 4.40
188 189 5.766670 TGATTAGCATTTAGGATTGGAGCAG 59.233 40.000 0.00 0.00 0.00 4.24
189 190 5.532406 GTGATTAGCATTTAGGATTGGAGCA 59.468 40.000 0.00 0.00 0.00 4.26
190 191 5.334414 CGTGATTAGCATTTAGGATTGGAGC 60.334 44.000 0.00 0.00 0.00 4.70
191 192 5.180117 CCGTGATTAGCATTTAGGATTGGAG 59.820 44.000 0.00 0.00 0.00 3.86
192 193 5.063204 CCGTGATTAGCATTTAGGATTGGA 58.937 41.667 0.00 0.00 0.00 3.53
193 194 4.216257 CCCGTGATTAGCATTTAGGATTGG 59.784 45.833 0.00 0.00 0.00 3.16
194 195 4.320494 GCCCGTGATTAGCATTTAGGATTG 60.320 45.833 0.00 0.00 0.00 2.67
195 196 3.821033 GCCCGTGATTAGCATTTAGGATT 59.179 43.478 0.00 0.00 0.00 3.01
196 197 3.412386 GCCCGTGATTAGCATTTAGGAT 58.588 45.455 0.00 0.00 0.00 3.24
197 198 2.805295 CGCCCGTGATTAGCATTTAGGA 60.805 50.000 0.00 0.00 0.00 2.94
198 199 1.531149 CGCCCGTGATTAGCATTTAGG 59.469 52.381 0.00 0.00 0.00 2.69
199 200 1.069906 GCGCCCGTGATTAGCATTTAG 60.070 52.381 0.00 0.00 0.00 1.85
200 201 0.941542 GCGCCCGTGATTAGCATTTA 59.058 50.000 0.00 0.00 0.00 1.40
201 202 0.748005 AGCGCCCGTGATTAGCATTT 60.748 50.000 2.29 0.00 0.00 2.32
202 203 1.153168 AGCGCCCGTGATTAGCATT 60.153 52.632 2.29 0.00 0.00 3.56
203 204 1.889105 CAGCGCCCGTGATTAGCAT 60.889 57.895 2.29 0.00 0.00 3.79
204 205 2.511373 CAGCGCCCGTGATTAGCA 60.511 61.111 2.29 0.00 0.00 3.49
205 206 1.366111 TTTCAGCGCCCGTGATTAGC 61.366 55.000 2.29 0.00 0.00 3.09
206 207 1.299541 ATTTCAGCGCCCGTGATTAG 58.700 50.000 2.29 0.00 0.00 1.73
207 208 2.605837 TATTTCAGCGCCCGTGATTA 57.394 45.000 2.29 0.00 0.00 1.75
208 209 1.400494 GTTATTTCAGCGCCCGTGATT 59.600 47.619 2.29 0.00 0.00 2.57
209 210 1.014352 GTTATTTCAGCGCCCGTGAT 58.986 50.000 2.29 0.00 0.00 3.06
210 211 1.022451 GGTTATTTCAGCGCCCGTGA 61.022 55.000 2.29 0.00 0.00 4.35
211 212 1.024579 AGGTTATTTCAGCGCCCGTG 61.025 55.000 2.29 0.00 0.00 4.94
212 213 1.024579 CAGGTTATTTCAGCGCCCGT 61.025 55.000 2.29 0.00 0.00 5.28
213 214 1.721487 CAGGTTATTTCAGCGCCCG 59.279 57.895 2.29 0.00 0.00 6.13
214 215 1.433471 GCAGGTTATTTCAGCGCCC 59.567 57.895 2.29 0.00 0.00 6.13
215 216 1.433471 GGCAGGTTATTTCAGCGCC 59.567 57.895 2.29 0.00 0.00 6.53
216 217 1.062525 CGGCAGGTTATTTCAGCGC 59.937 57.895 0.00 0.00 0.00 5.92
217 218 1.062525 GCGGCAGGTTATTTCAGCG 59.937 57.895 0.00 0.00 0.00 5.18
218 219 1.312371 TGGCGGCAGGTTATTTCAGC 61.312 55.000 7.97 0.00 0.00 4.26
219 220 0.451783 GTGGCGGCAGGTTATTTCAG 59.548 55.000 13.91 0.00 0.00 3.02
220 221 0.250945 TGTGGCGGCAGGTTATTTCA 60.251 50.000 13.91 0.23 0.00 2.69
221 222 0.170339 GTGTGGCGGCAGGTTATTTC 59.830 55.000 13.91 0.00 0.00 2.17
222 223 0.251165 AGTGTGGCGGCAGGTTATTT 60.251 50.000 13.91 0.00 0.00 1.40
223 224 0.251165 AAGTGTGGCGGCAGGTTATT 60.251 50.000 13.91 0.00 0.00 1.40
224 225 0.960364 CAAGTGTGGCGGCAGGTTAT 60.960 55.000 13.91 0.00 0.00 1.89
225 226 1.599518 CAAGTGTGGCGGCAGGTTA 60.600 57.895 13.91 0.00 0.00 2.85
226 227 2.906897 CAAGTGTGGCGGCAGGTT 60.907 61.111 13.91 2.84 0.00 3.50
227 228 3.872603 TCAAGTGTGGCGGCAGGT 61.873 61.111 13.91 0.00 0.00 4.00
228 229 3.357079 GTCAAGTGTGGCGGCAGG 61.357 66.667 13.91 0.00 0.00 4.85
234 235 0.237498 GGTAAAGCGTCAAGTGTGGC 59.763 55.000 0.00 0.00 0.00 5.01
235 236 1.798813 GAGGTAAAGCGTCAAGTGTGG 59.201 52.381 0.00 0.00 32.62 4.17
236 237 1.455786 CGAGGTAAAGCGTCAAGTGTG 59.544 52.381 0.00 0.00 32.62 3.82
237 238 1.779569 CGAGGTAAAGCGTCAAGTGT 58.220 50.000 0.00 0.00 32.62 3.55
238 239 0.438830 GCGAGGTAAAGCGTCAAGTG 59.561 55.000 0.00 0.00 32.62 3.16
239 240 0.032952 TGCGAGGTAAAGCGTCAAGT 59.967 50.000 0.00 0.00 35.87 3.16
240 241 0.438830 GTGCGAGGTAAAGCGTCAAG 59.561 55.000 0.00 0.00 35.87 3.02
241 242 1.279527 CGTGCGAGGTAAAGCGTCAA 61.280 55.000 0.00 0.00 35.87 3.18
242 243 1.731613 CGTGCGAGGTAAAGCGTCA 60.732 57.895 0.00 0.00 35.87 4.35
243 244 2.442188 CCGTGCGAGGTAAAGCGTC 61.442 63.158 0.00 0.00 35.87 5.19
244 245 2.431942 CCGTGCGAGGTAAAGCGT 60.432 61.111 0.00 0.00 35.87 5.07
245 246 3.849953 GCCGTGCGAGGTAAAGCG 61.850 66.667 0.00 0.00 35.87 4.68
246 247 1.847890 TTTGCCGTGCGAGGTAAAGC 61.848 55.000 8.92 0.00 40.17 3.51
247 248 0.589223 TTTTGCCGTGCGAGGTAAAG 59.411 50.000 11.85 0.00 44.43 1.85
248 249 0.308376 GTTTTGCCGTGCGAGGTAAA 59.692 50.000 8.92 8.92 42.63 2.01
249 250 0.814410 TGTTTTGCCGTGCGAGGTAA 60.814 50.000 0.00 0.00 34.07 2.85
250 251 0.814410 TTGTTTTGCCGTGCGAGGTA 60.814 50.000 0.00 0.00 0.00 3.08
251 252 1.658686 TTTGTTTTGCCGTGCGAGGT 61.659 50.000 0.00 0.00 0.00 3.85
252 253 0.934436 CTTTGTTTTGCCGTGCGAGG 60.934 55.000 0.00 0.00 0.00 4.63
253 254 1.539776 GCTTTGTTTTGCCGTGCGAG 61.540 55.000 0.00 0.00 0.00 5.03
254 255 1.587613 GCTTTGTTTTGCCGTGCGA 60.588 52.632 0.00 0.00 0.00 5.10
255 256 2.584967 GGCTTTGTTTTGCCGTGCG 61.585 57.895 0.00 0.00 39.71 5.34
256 257 3.318875 GGCTTTGTTTTGCCGTGC 58.681 55.556 0.00 0.00 39.71 5.34
261 262 1.276547 GCGCTTGGCTTTGTTTTGC 59.723 52.632 0.00 0.00 39.11 3.68
272 273 1.739338 ATAGGGAGTCGAGCGCTTGG 61.739 60.000 24.31 13.67 0.00 3.61
273 274 0.103208 AATAGGGAGTCGAGCGCTTG 59.897 55.000 19.15 19.15 0.00 4.01
274 275 0.824759 AAATAGGGAGTCGAGCGCTT 59.175 50.000 13.26 0.00 0.00 4.68
275 276 0.824759 AAAATAGGGAGTCGAGCGCT 59.175 50.000 11.27 11.27 0.00 5.92
276 277 0.931005 CAAAATAGGGAGTCGAGCGC 59.069 55.000 0.00 0.00 0.00 5.92
277 278 0.931005 GCAAAATAGGGAGTCGAGCG 59.069 55.000 0.00 0.00 0.00 5.03
278 279 0.931005 CGCAAAATAGGGAGTCGAGC 59.069 55.000 0.00 0.00 0.00 5.03
279 280 2.194271 GACGCAAAATAGGGAGTCGAG 58.806 52.381 0.00 0.00 0.00 4.04
280 281 2.288961 GACGCAAAATAGGGAGTCGA 57.711 50.000 0.00 0.00 0.00 4.20
282 283 2.288961 TCGACGCAAAATAGGGAGTC 57.711 50.000 0.00 0.00 0.00 3.36
283 284 2.550978 CATCGACGCAAAATAGGGAGT 58.449 47.619 0.00 0.00 0.00 3.85
284 285 1.261619 GCATCGACGCAAAATAGGGAG 59.738 52.381 0.00 0.00 0.00 4.30
285 286 1.295792 GCATCGACGCAAAATAGGGA 58.704 50.000 0.00 0.00 0.00 4.20
286 287 0.307760 GGCATCGACGCAAAATAGGG 59.692 55.000 5.59 0.00 0.00 3.53
287 288 0.042188 CGGCATCGACGCAAAATAGG 60.042 55.000 5.59 0.00 39.00 2.57
288 289 3.420968 CGGCATCGACGCAAAATAG 57.579 52.632 5.59 0.00 39.00 1.73
308 309 1.424493 CTCAAATCCTGGCGCTCGAC 61.424 60.000 7.64 0.00 0.00 4.20
309 310 1.153568 CTCAAATCCTGGCGCTCGA 60.154 57.895 7.64 0.00 0.00 4.04
310 311 2.817423 GCTCAAATCCTGGCGCTCG 61.817 63.158 7.64 0.00 0.00 5.03
311 312 2.817423 CGCTCAAATCCTGGCGCTC 61.817 63.158 7.64 0.00 37.71 5.03
312 313 2.821366 CGCTCAAATCCTGGCGCT 60.821 61.111 7.64 0.00 37.71 5.92
314 315 1.089481 TAAGCGCTCAAATCCTGGCG 61.089 55.000 12.06 0.00 43.42 5.69
315 316 1.094785 TTAAGCGCTCAAATCCTGGC 58.905 50.000 12.06 0.00 0.00 4.85
316 317 2.096496 CAGTTAAGCGCTCAAATCCTGG 59.904 50.000 12.06 0.00 0.00 4.45
317 318 2.476854 GCAGTTAAGCGCTCAAATCCTG 60.477 50.000 12.06 13.46 0.00 3.86
318 319 1.740025 GCAGTTAAGCGCTCAAATCCT 59.260 47.619 12.06 0.00 0.00 3.24
319 320 1.202188 GGCAGTTAAGCGCTCAAATCC 60.202 52.381 12.06 1.59 34.64 3.01
320 321 1.529826 CGGCAGTTAAGCGCTCAAATC 60.530 52.381 12.06 3.90 34.64 2.17
321 322 0.447801 CGGCAGTTAAGCGCTCAAAT 59.552 50.000 12.06 0.00 34.64 2.32
322 323 0.601576 TCGGCAGTTAAGCGCTCAAA 60.602 50.000 12.06 5.58 34.64 2.69
323 324 0.391130 ATCGGCAGTTAAGCGCTCAA 60.391 50.000 12.06 0.00 34.64 3.02
324 325 0.806102 GATCGGCAGTTAAGCGCTCA 60.806 55.000 12.06 0.00 34.64 4.26
325 326 1.812214 CGATCGGCAGTTAAGCGCTC 61.812 60.000 12.06 0.00 34.64 5.03
326 327 1.878522 CGATCGGCAGTTAAGCGCT 60.879 57.895 2.64 2.64 34.64 5.92
327 328 2.621000 CGATCGGCAGTTAAGCGC 59.379 61.111 7.38 0.00 34.64 5.92
328 329 3.309675 CCGATCGGCAGTTAAGCG 58.690 61.111 23.37 0.00 34.64 4.68
338 339 0.105964 TTGTTATCCTGGCCGATCGG 59.894 55.000 30.03 30.03 38.57 4.18
339 340 2.069273 GATTGTTATCCTGGCCGATCG 58.931 52.381 8.51 8.51 0.00 3.69
340 341 2.427506 GGATTGTTATCCTGGCCGATC 58.572 52.381 0.00 0.00 45.88 3.69
341 342 2.568623 GGATTGTTATCCTGGCCGAT 57.431 50.000 0.00 0.00 45.88 4.18
350 351 1.334869 CAAGGCGCCAGGATTGTTATC 59.665 52.381 31.54 0.00 0.00 1.75
351 352 1.392589 CAAGGCGCCAGGATTGTTAT 58.607 50.000 31.54 0.00 0.00 1.89
352 353 1.312371 GCAAGGCGCCAGGATTGTTA 61.312 55.000 31.54 0.00 32.94 2.41
353 354 2.639327 GCAAGGCGCCAGGATTGTT 61.639 57.895 31.54 9.43 32.94 2.83
354 355 3.064324 GCAAGGCGCCAGGATTGT 61.064 61.111 31.54 1.71 32.94 2.71
378 379 3.660111 GCATATCCAACGCGGGGC 61.660 66.667 12.47 0.00 34.36 5.80
379 380 1.961277 GAGCATATCCAACGCGGGG 60.961 63.158 12.47 12.41 34.36 5.73
380 381 0.532862 AAGAGCATATCCAACGCGGG 60.533 55.000 12.47 2.26 34.36 6.13
381 382 2.148916 TAAGAGCATATCCAACGCGG 57.851 50.000 12.47 0.00 0.00 6.46
382 383 2.159787 GCATAAGAGCATATCCAACGCG 60.160 50.000 3.53 3.53 0.00 6.01
383 384 2.160417 GGCATAAGAGCATATCCAACGC 59.840 50.000 0.00 0.00 35.83 4.84
384 385 3.402110 TGGCATAAGAGCATATCCAACG 58.598 45.455 0.00 0.00 35.83 4.10
385 386 5.972107 AATGGCATAAGAGCATATCCAAC 57.028 39.130 0.00 0.00 35.83 3.77
386 387 9.925545 ATATAAATGGCATAAGAGCATATCCAA 57.074 29.630 0.00 0.00 35.83 3.53
473 477 2.195139 GCCATGCCTGAGCCTGAT 59.805 61.111 0.00 0.00 36.81 2.90
518 522 1.135139 GCTCAGCACACTCTAATCGGA 59.865 52.381 0.00 0.00 0.00 4.55
534 538 4.147449 CATGACGGGCCGAGCTCA 62.147 66.667 35.78 26.01 0.00 4.26
536 540 4.457496 CACATGACGGGCCGAGCT 62.457 66.667 35.78 10.92 0.00 4.09
623 627 4.701651 ACCTTCTCCTTCCGTAAAAAGT 57.298 40.909 0.00 0.00 0.00 2.66
624 628 5.306394 AGAACCTTCTCCTTCCGTAAAAAG 58.694 41.667 0.00 0.00 29.94 2.27
625 629 5.300411 AGAACCTTCTCCTTCCGTAAAAA 57.700 39.130 0.00 0.00 29.94 1.94
626 630 4.968971 AGAACCTTCTCCTTCCGTAAAA 57.031 40.909 0.00 0.00 29.94 1.52
627 631 4.968971 AAGAACCTTCTCCTTCCGTAAA 57.031 40.909 0.00 0.00 36.28 2.01
628 632 4.968971 AAAGAACCTTCTCCTTCCGTAA 57.031 40.909 0.00 0.00 36.28 3.18
629 633 4.968971 AAAAGAACCTTCTCCTTCCGTA 57.031 40.909 0.00 0.00 36.28 4.02
630 634 3.859061 AAAAGAACCTTCTCCTTCCGT 57.141 42.857 0.00 0.00 36.28 4.69
734 749 5.613329 TGCTAAAGTTTCGTCTTTCCCTTA 58.387 37.500 0.00 0.00 38.40 2.69
751 766 6.630071 AGTTTCTTTTTCTTGTGCTGCTAAA 58.370 32.000 0.00 0.00 0.00 1.85
762 777 4.729227 TTGCGGGAAGTTTCTTTTTCTT 57.271 36.364 0.00 0.00 0.00 2.52
800 815 2.453497 TGTGGGGTGGGGGTCAAT 60.453 61.111 0.00 0.00 0.00 2.57
815 830 0.856982 TCATTTTGGGTGGAGGGTGT 59.143 50.000 0.00 0.00 0.00 4.16
845 860 7.135591 TCATTTTGGGAGGAAAGTTTCAATT 57.864 32.000 17.16 2.39 0.00 2.32
942 959 3.142393 CGGGGCGGAGATGAGATT 58.858 61.111 0.00 0.00 0.00 2.40
994 1011 2.340328 GGGCTAGGGTTTGGTTGCG 61.340 63.158 0.00 0.00 0.00 4.85
1019 1036 4.078516 GAGGGTGGGGTTCGACGG 62.079 72.222 0.00 0.00 0.00 4.79
1021 1038 3.714001 GGGAGGGTGGGGTTCGAC 61.714 72.222 0.00 0.00 0.00 4.20
1022 1039 3.918328 GAGGGAGGGTGGGGTTCGA 62.918 68.421 0.00 0.00 0.00 3.71
1024 1041 3.015753 GGAGGGAGGGTGGGGTTC 61.016 72.222 0.00 0.00 0.00 3.62
1025 1042 4.695791 GGGAGGGAGGGTGGGGTT 62.696 72.222 0.00 0.00 0.00 4.11
1029 1046 4.825679 GGGAGGGAGGGAGGGTGG 62.826 77.778 0.00 0.00 0.00 4.61
1032 1049 4.825679 GTGGGGAGGGAGGGAGGG 62.826 77.778 0.00 0.00 0.00 4.30
1379 1753 0.824109 CCGGCAGAGTGATTACCTCA 59.176 55.000 0.00 0.00 0.00 3.86
1418 1792 0.320334 TCGCGTCATCAAGGCTCAAA 60.320 50.000 5.77 0.00 36.61 2.69
1477 1851 2.103771 CCGGACAAGGTGATCTGATCAT 59.896 50.000 22.09 6.99 42.04 2.45
1496 1870 3.321968 TGATCATCACATACCCTTCTCCG 59.678 47.826 0.00 0.00 0.00 4.63
1538 1912 0.315251 CAGGAGACGTGAACTCTGCA 59.685 55.000 0.00 0.00 35.10 4.41
1632 2017 2.079170 TGCAGAGGAGGATCTACAGG 57.921 55.000 0.00 0.00 33.73 4.00
1659 2044 4.641989 CCCATTGATAGGGTTCACTGAAAG 59.358 45.833 0.00 0.00 41.61 2.62
1843 2243 2.618045 GGAACGTTGGGAATGGATGTCT 60.618 50.000 5.00 0.00 0.00 3.41
1897 2309 0.322008 GCCACCTCCTGGTTCTTCAG 60.322 60.000 0.00 0.00 46.05 3.02
1909 2321 2.948720 AAGAGTCCAGCGCCACCTC 61.949 63.158 2.29 4.71 0.00 3.85
1915 2327 3.426568 GTGCCAAGAGTCCAGCGC 61.427 66.667 0.00 0.00 0.00 5.92
1939 2351 4.524328 GTGGAGATGGTTCAAGGACAAATT 59.476 41.667 0.00 0.00 0.00 1.82
2185 2604 0.843309 TCCTTGCACCAGAGGTTCAA 59.157 50.000 2.14 1.58 36.58 2.69
2627 3193 4.705023 TCTTCATCAAGATCGTCAGTACCA 59.295 41.667 0.00 0.00 33.38 3.25
2794 3372 2.038863 TTTCCCTGGCTGGTCTTCTA 57.961 50.000 9.73 0.00 0.00 2.10
2969 3551 6.509418 AACAGAGTTGTTCAAAGTTTAGCA 57.491 33.333 0.00 0.00 44.00 3.49
3033 3615 3.389329 CCAGGACTGATATTACACAGGCT 59.611 47.826 0.00 0.00 41.39 4.58
3616 4209 9.010029 ACCGAGTTACAAAATAATTCTGTTCAT 57.990 29.630 0.00 0.00 0.00 2.57
3617 4210 8.385898 ACCGAGTTACAAAATAATTCTGTTCA 57.614 30.769 0.00 0.00 0.00 3.18
3709 4302 6.350110 GCTAGATCTTAAGCAGGGATGACTAG 60.350 46.154 11.84 0.00 38.63 2.57
3728 4321 2.122768 CTTCCCCTGTTCAGGCTAGAT 58.877 52.381 12.88 0.00 0.00 1.98
3788 4381 8.379902 GTGGATAAAATTTAAAACATGAAGGCG 58.620 33.333 0.00 0.00 0.00 5.52
4003 4599 2.945008 TCTCCATTGCAAGATTTAGGCG 59.055 45.455 4.94 0.00 0.00 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.