Multiple sequence alignment - TraesCS5A01G303100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G303100 chr5A 100.000 6432 0 0 1 6432 512258558 512252127 0.000000e+00 11878.0
1 TraesCS5A01G303100 chr5A 97.595 291 6 1 6085 6374 410796520 410796230 1.250000e-136 497.0
2 TraesCS5A01G303100 chr5A 96.918 292 8 1 6090 6381 410796081 410795791 7.500000e-134 488.0
3 TraesCS5A01G303100 chr5A 88.754 329 28 2 810 1137 11440125 11440445 1.680000e-105 394.0
4 TraesCS5A01G303100 chr5B 93.433 4203 198 38 1 4161 487712847 487708681 0.000000e+00 6161.0
5 TraesCS5A01G303100 chr5B 93.651 1638 74 17 4409 6028 487708610 487706985 0.000000e+00 2422.0
6 TraesCS5A01G303100 chr5B 89.197 361 27 4 743 1102 696005526 696005875 2.130000e-119 440.0
7 TraesCS5A01G303100 chr5D 93.357 4215 187 39 1 4161 406607153 406602978 0.000000e+00 6146.0
8 TraesCS5A01G303100 chr5D 94.277 1590 69 9 4474 6059 406602766 406601195 0.000000e+00 2412.0
9 TraesCS5A01G303100 chr3A 97.980 297 4 1 6087 6381 698036994 698037290 1.240000e-141 514.0
10 TraesCS5A01G303100 chr3A 96.622 296 10 0 6086 6381 733914169 733914464 5.790000e-135 492.0
11 TraesCS5A01G303100 chr3A 96.284 296 11 0 6086 6381 733909339 733909634 2.700000e-133 486.0
12 TraesCS5A01G303100 chr3A 96.284 296 11 0 6086 6381 733912434 733912729 2.700000e-133 486.0
13 TraesCS5A01G303100 chr6A 96.939 294 9 0 6090 6383 472393940 472393647 1.610000e-135 494.0
14 TraesCS5A01G303100 chr6A 88.643 361 29 4 743 1102 77371540 77371889 4.610000e-116 429.0
15 TraesCS5A01G303100 chr6B 96.220 291 11 0 6091 6381 504368169 504367879 1.620000e-130 477.0
16 TraesCS5A01G303100 chr6B 88.643 361 29 4 743 1102 621062825 621062476 4.610000e-116 429.0
17 TraesCS5A01G303100 chr3B 95.623 297 12 1 6088 6384 823281131 823280836 5.840000e-130 475.0
18 TraesCS5A01G303100 chr7A 89.197 361 27 4 743 1102 33681037 33680688 2.130000e-119 440.0
19 TraesCS5A01G303100 chr7A 89.058 329 27 3 810 1137 1173950 1173630 3.610000e-107 399.0
20 TraesCS5A01G303100 chr7A 86.872 358 35 5 745 1101 458396934 458396588 2.170000e-104 390.0
21 TraesCS5A01G303100 chr7A 99.476 191 1 0 4194 4384 729274027 729274217 1.330000e-91 348.0
22 TraesCS5A01G303100 chr7A 79.626 481 74 19 4911 5382 268857695 268858160 2.240000e-84 324.0
23 TraesCS5A01G303100 chr7A 85.417 96 12 2 4496 4589 268857290 268857385 1.480000e-16 99.0
24 TraesCS5A01G303100 chr1B 88.920 361 28 4 743 1102 113972146 113972495 9.900000e-118 435.0
25 TraesCS5A01G303100 chr1B 88.920 361 28 4 743 1102 655555775 655556124 9.900000e-118 435.0
26 TraesCS5A01G303100 chr1B 89.329 328 26 2 812 1138 586692994 586692675 2.790000e-108 403.0
27 TraesCS5A01G303100 chr1B 87.258 361 34 3 743 1102 441141557 441141906 1.000000e-107 401.0
28 TraesCS5A01G303100 chr1B 98.980 196 1 1 4190 4384 301282206 301282401 3.690000e-92 350.0
29 TraesCS5A01G303100 chr1B 98.020 202 3 1 4195 4395 664059329 664059128 3.690000e-92 350.0
30 TraesCS5A01G303100 chr1B 94.643 56 3 0 1194 1249 586692672 586692617 3.190000e-13 87.9
31 TraesCS5A01G303100 chr2A 88.674 362 28 4 743 1102 664901247 664901597 4.610000e-116 429.0
32 TraesCS5A01G303100 chr2A 98.010 201 3 1 4196 4396 179287723 179287524 1.330000e-91 348.0
33 TraesCS5A01G303100 chr1A 88.643 361 28 5 743 1102 503205980 503206328 1.660000e-115 427.0
34 TraesCS5A01G303100 chr1A 88.089 361 31 4 743 1102 10360848 10361197 9.970000e-113 418.0
35 TraesCS5A01G303100 chr1A 87.258 361 34 4 743 1102 201969634 201969285 1.000000e-107 401.0
36 TraesCS5A01G303100 chr1A 95.890 219 6 3 4169 4386 395198094 395198310 1.030000e-92 351.0
37 TraesCS5A01G303100 chr7D 89.666 329 25 3 810 1137 565065797 565066117 1.670000e-110 411.0
38 TraesCS5A01G303100 chr7D 75.413 907 161 49 4496 5382 252263936 252263072 3.640000e-102 383.0
39 TraesCS5A01G303100 chr7D 97.727 44 1 0 743 786 565065755 565065798 6.920000e-10 76.8
40 TraesCS5A01G303100 chr2B 89.666 329 25 2 810 1137 535684315 535684635 1.670000e-110 411.0
41 TraesCS5A01G303100 chr2B 98.477 197 1 2 4187 4383 7765451 7765645 4.770000e-91 346.0
42 TraesCS5A01G303100 chr2B 94.931 217 5 5 4167 4380 429255687 429255900 1.030000e-87 335.0
43 TraesCS5A01G303100 chr6D 89.362 329 26 2 810 1137 440543287 440542967 7.770000e-109 405.0
44 TraesCS5A01G303100 chr6D 97.561 41 1 0 746 786 440543326 440543286 3.220000e-08 71.3
45 TraesCS5A01G303100 chr4B 87.842 329 31 2 810 1137 275447110 275446790 1.690000e-100 377.0
46 TraesCS5A01G303100 chr7B 74.696 905 171 46 4496 5382 229094440 229093576 3.690000e-92 350.0
47 TraesCS5A01G303100 chr7B 99.479 192 1 0 4195 4386 670283196 670283387 3.690000e-92 350.0
48 TraesCS5A01G303100 chr4A 98.010 201 1 2 4196 4396 338745894 338745697 4.770000e-91 346.0
49 TraesCS5A01G303100 chr4A 80.488 246 32 9 2650 2886 7124785 7125023 2.380000e-39 174.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G303100 chr5A 512252127 512258558 6431 True 11878.0 11878 100.000000 1 6432 1 chr5A.!!$R1 6431
1 TraesCS5A01G303100 chr5A 410795791 410796520 729 True 492.5 497 97.256500 6085 6381 2 chr5A.!!$R2 296
2 TraesCS5A01G303100 chr5B 487706985 487712847 5862 True 4291.5 6161 93.542000 1 6028 2 chr5B.!!$R1 6027
3 TraesCS5A01G303100 chr5D 406601195 406607153 5958 True 4279.0 6146 93.817000 1 6059 2 chr5D.!!$R1 6058
4 TraesCS5A01G303100 chr3A 733909339 733914464 5125 False 488.0 492 96.396667 6086 6381 3 chr3A.!!$F2 295
5 TraesCS5A01G303100 chr7A 268857290 268858160 870 False 211.5 324 82.521500 4496 5382 2 chr7A.!!$F2 886
6 TraesCS5A01G303100 chr7D 252263072 252263936 864 True 383.0 383 75.413000 4496 5382 1 chr7D.!!$R1 886
7 TraesCS5A01G303100 chr7B 229093576 229094440 864 True 350.0 350 74.696000 4496 5382 1 chr7B.!!$R1 886

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
151 158 0.466555 TTGGTTGGTCCTTCCGTTGG 60.467 55.000 0.0 0.0 39.52 3.77 F
1038 1065 0.109039 GTGTCCTCGTCAAGCTCCTC 60.109 60.000 0.0 0.0 0.00 3.71 F
1083 1110 1.215382 CGCAGGAGAACATCGGTCA 59.785 57.895 0.0 0.0 0.00 4.02 F
1098 1125 1.279271 CGGTCATCCCTTCTTCAGGTT 59.721 52.381 0.0 0.0 42.02 3.50 F
2723 2761 0.175760 TACAGAGAATCGGCACAGGC 59.824 55.000 0.0 0.0 42.67 4.85 F
3815 3894 0.107214 TTAGCATGTAGGCACAGGGC 60.107 55.000 0.0 0.0 38.30 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1362 1389 0.239347 CGGCAACTTTGGAAGAGCTG 59.761 55.000 0.00 0.55 34.91 4.24 R
1860 1887 1.310933 CCCAGCTTCTTCGCAATGCT 61.311 55.000 2.94 0.00 0.00 3.79 R
1920 1947 1.795286 CTGTCAGCTTTGGTCGTCTTC 59.205 52.381 0.00 0.00 0.00 2.87 R
2912 2950 2.482864 CCAAAATGAGGTGCAAACCAC 58.517 47.619 0.00 0.00 43.90 4.16 R
4216 4295 0.110056 CACAAGGCAGCAGCTTTACG 60.110 55.000 0.00 0.00 38.07 3.18 R
5456 5576 0.036164 CCTCACAATCCCCACGTCAA 59.964 55.000 0.00 0.00 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
151 158 0.466555 TTGGTTGGTCCTTCCGTTGG 60.467 55.000 0.00 0.00 39.52 3.77
273 288 1.361271 CGCCCACATTGATGCCATC 59.639 57.895 0.00 0.00 0.00 3.51
409 430 2.263540 CCCTGCAAGCAATGGCAC 59.736 61.111 0.00 0.00 44.61 5.01
478 499 2.609916 GCAGTTCTCGCCTAATCCTTTC 59.390 50.000 0.00 0.00 0.00 2.62
538 562 2.352651 CTGTTGGATAGGTGTTCGCATG 59.647 50.000 0.00 0.00 0.00 4.06
550 574 2.091541 GTTCGCATGATTTTCTCCCCA 58.908 47.619 0.00 0.00 0.00 4.96
563 587 2.125106 CCCCACCTTAGCTGTCGC 60.125 66.667 0.00 0.00 0.00 5.19
587 611 6.295067 GCTGTTACCACTGAAATTATTGGGTT 60.295 38.462 0.00 0.00 33.00 4.11
591 615 8.745590 GTTACCACTGAAATTATTGGGTTACAT 58.254 33.333 0.00 0.00 33.00 2.29
606 630 3.446873 GGTTACATGCACCAATGATTCCA 59.553 43.478 9.39 0.00 34.04 3.53
720 745 8.660373 GTGATTAAACTCTGAAAGATGGTACTG 58.340 37.037 0.00 0.00 45.62 2.74
735 760 0.973632 TACTGCCGTGGAGAACATGT 59.026 50.000 0.00 0.00 34.14 3.21
899 926 6.237942 CCAGCAGTGAATTGATAACTAACTCG 60.238 42.308 0.00 0.00 0.00 4.18
905 932 4.755266 ATTGATAACTAACTCGGCCACT 57.245 40.909 2.24 0.00 0.00 4.00
908 935 5.002464 TGATAACTAACTCGGCCACTTAC 57.998 43.478 2.24 0.00 0.00 2.34
924 951 4.389077 CCACTTACGTTGGTTCTGATTCTC 59.611 45.833 0.00 0.00 0.00 2.87
933 960 5.344743 TGGTTCTGATTCTCCATACACTC 57.655 43.478 0.00 0.00 0.00 3.51
934 961 4.777366 TGGTTCTGATTCTCCATACACTCA 59.223 41.667 0.00 0.00 0.00 3.41
969 996 6.645790 AACTGCTGAATCTCTTTGAACATT 57.354 33.333 0.00 0.00 0.00 2.71
992 1019 3.786635 CAGAGTAATGCGCTTAAGGAGT 58.213 45.455 9.73 0.00 0.00 3.85
1008 1035 2.236146 AGGAGTTACATCAATGGCGTCA 59.764 45.455 0.00 0.00 0.00 4.35
1038 1065 0.109039 GTGTCCTCGTCAAGCTCCTC 60.109 60.000 0.00 0.00 0.00 3.71
1074 1101 2.612972 GGATGTCAAAGTCGCAGGAGAA 60.613 50.000 0.00 0.00 0.00 2.87
1083 1110 1.215382 CGCAGGAGAACATCGGTCA 59.785 57.895 0.00 0.00 0.00 4.02
1098 1125 1.279271 CGGTCATCCCTTCTTCAGGTT 59.721 52.381 0.00 0.00 42.02 3.50
1185 1212 2.094659 CGATTCTTCGCACGCCACT 61.095 57.895 0.00 0.00 38.75 4.00
1362 1389 1.609841 CCCGAGGACCTTGTGTTAACC 60.610 57.143 8.01 0.00 0.00 2.85
1443 1470 3.449737 CCAATGGATTGAAAGATGCTGGT 59.550 43.478 0.00 0.00 40.14 4.00
1686 1713 4.510038 ACCTGCAACATTTGACAGATTC 57.490 40.909 10.17 0.00 37.13 2.52
1901 1928 4.572795 GGAAGGAGCTGTAGATACAAAAGC 59.427 45.833 0.00 0.00 35.50 3.51
1902 1929 4.826274 AGGAGCTGTAGATACAAAAGCA 57.174 40.909 0.00 0.00 35.50 3.91
1983 2010 6.260714 CCCCAACGGTATGTACTATTTTTACC 59.739 42.308 0.00 0.00 0.00 2.85
2030 2060 8.087750 TGATGTTTTAATTTTCTGTCATCACCC 58.912 33.333 0.00 0.00 36.56 4.61
2043 2073 4.467795 TGTCATCACCCTCTTCTCTTTAGG 59.532 45.833 0.00 0.00 0.00 2.69
2100 2130 9.254133 CATGGAGATATGCTATAAACCTATTCG 57.746 37.037 0.00 0.00 0.00 3.34
2180 2210 5.689383 TTGCTCCAAAGTAACTTTGCTAG 57.311 39.130 0.00 0.00 46.44 3.42
2188 2218 6.708949 CCAAAGTAACTTTGCTAGTCCTGTTA 59.291 38.462 0.00 0.00 46.44 2.41
2363 2393 5.044030 TCCTACTCTAAAGAGGACATCTGGT 60.044 44.000 11.53 0.00 46.13 4.00
2499 2529 7.112779 AGGAAAGGTATGACTAAGTTCATTGG 58.887 38.462 0.00 0.00 37.42 3.16
2526 2564 8.501580 CATGATCAGTATGGCTTTATTGTACAG 58.498 37.037 0.09 0.00 36.16 2.74
2633 2671 9.471702 AAATTCTGTCCATTATCTGTGAGAAAT 57.528 29.630 0.00 0.00 0.00 2.17
2641 2679 8.306038 TCCATTATCTGTGAGAAATTTTGTTGG 58.694 33.333 0.00 0.00 0.00 3.77
2723 2761 0.175760 TACAGAGAATCGGCACAGGC 59.824 55.000 0.00 0.00 42.67 4.85
2798 2836 5.319043 TGTTTGAGGTACCTTTCTTCCAT 57.681 39.130 17.53 0.00 0.00 3.41
2816 2854 3.774766 TCCATACACTAGCCTTGTGATGT 59.225 43.478 13.22 0.00 38.65 3.06
2817 2855 3.873361 CCATACACTAGCCTTGTGATGTG 59.127 47.826 13.22 7.96 38.65 3.21
2818 2856 4.383010 CCATACACTAGCCTTGTGATGTGA 60.383 45.833 13.22 0.00 38.65 3.58
2819 2857 3.988976 ACACTAGCCTTGTGATGTGAT 57.011 42.857 13.22 0.00 38.65 3.06
2820 2858 3.603532 ACACTAGCCTTGTGATGTGATG 58.396 45.455 13.22 0.00 38.65 3.07
2876 2914 3.689161 CGTTGCTAAATGACTTCCATGGA 59.311 43.478 11.44 11.44 35.24 3.41
3117 3163 7.047460 ACGGTAGAAATACGATTCTATTGGT 57.953 36.000 11.27 8.21 42.26 3.67
3189 3264 6.172630 GCCAATGTTTTTGAAATCCTACCAT 58.827 36.000 0.00 0.00 0.00 3.55
3251 3326 4.440663 CCGTCTGATGAGCTTTATGAGACA 60.441 45.833 21.95 2.05 38.27 3.41
3356 3431 1.283347 ATCAGCACACCAGGACAGAT 58.717 50.000 0.00 0.00 0.00 2.90
3423 3498 4.801221 GCTTCCTTTGCGCTCGCG 62.801 66.667 9.73 6.98 45.51 5.87
3448 3523 2.614057 CACAAGGGCGGAGATCATTAAC 59.386 50.000 0.00 0.00 0.00 2.01
3496 3571 2.496817 GGGTCTAGCTGTCCTGCG 59.503 66.667 0.00 0.00 38.13 5.18
3539 3614 2.747855 CCAGCTCGTTTCTGCCCC 60.748 66.667 0.00 0.00 0.00 5.80
3591 3666 5.163468 GCCATCTTTGTGTAGAGATCTGAGA 60.163 44.000 0.00 0.00 30.43 3.27
3592 3667 6.506147 CCATCTTTGTGTAGAGATCTGAGAG 58.494 44.000 0.00 0.00 30.43 3.20
3665 3740 6.528423 CCAGAACTTTAAGTACATCTCTCGTG 59.472 42.308 0.00 0.00 0.00 4.35
3692 3769 4.462483 TGAAAGTTTGAAAGCTGGAACACT 59.538 37.500 0.00 0.00 0.00 3.55
3715 3792 7.281774 CACTGCTGAAGTTCATAACCATCTTAT 59.718 37.037 5.91 0.00 36.83 1.73
3721 3798 3.313012 TCATAACCATCTTATCGGCGG 57.687 47.619 7.21 0.00 0.00 6.13
3722 3799 2.631062 TCATAACCATCTTATCGGCGGT 59.369 45.455 7.21 0.65 0.00 5.68
3723 3800 2.519377 TAACCATCTTATCGGCGGTG 57.481 50.000 7.21 0.00 0.00 4.94
3724 3801 0.539986 AACCATCTTATCGGCGGTGT 59.460 50.000 7.21 0.00 0.00 4.16
3728 3805 3.181458 ACCATCTTATCGGCGGTGTAAAT 60.181 43.478 7.21 0.00 0.00 1.40
3731 3809 5.220970 CCATCTTATCGGCGGTGTAAATTTT 60.221 40.000 7.21 0.00 0.00 1.82
3732 3810 5.224562 TCTTATCGGCGGTGTAAATTTTG 57.775 39.130 7.21 0.00 0.00 2.44
3734 3812 0.241481 TCGGCGGTGTAAATTTTGCC 59.759 50.000 7.21 2.29 39.10 4.52
3735 3813 2.731875 GGCGGTGTAAATTTTGCCG 58.268 52.632 17.67 17.67 44.60 5.69
3736 3814 0.241481 GGCGGTGTAAATTTTGCCGA 59.759 50.000 22.94 0.00 44.57 5.54
3738 3816 2.601804 GCGGTGTAAATTTTGCCGATT 58.398 42.857 22.94 0.00 44.57 3.34
3739 3817 2.990514 GCGGTGTAAATTTTGCCGATTT 59.009 40.909 22.94 0.00 44.57 2.17
3742 3820 3.124466 GGTGTAAATTTTGCCGATTTGCC 59.876 43.478 0.00 0.00 30.92 4.52
3753 3831 1.466950 CCGATTTGCCGTGCTAGAAAA 59.533 47.619 0.00 0.00 0.00 2.29
3754 3832 2.476185 CCGATTTGCCGTGCTAGAAAAG 60.476 50.000 0.00 0.00 0.00 2.27
3768 3847 5.574891 CTAGAAAAGCAGAGCTCTACAGA 57.425 43.478 17.75 0.00 38.25 3.41
3803 3882 6.427853 TCGAATCAAATGGAGGTATTAGCATG 59.572 38.462 0.00 0.00 0.00 4.06
3804 3883 6.205464 CGAATCAAATGGAGGTATTAGCATGT 59.795 38.462 0.00 0.00 0.00 3.21
3808 3887 4.559862 ATGGAGGTATTAGCATGTAGGC 57.440 45.455 0.00 0.00 0.00 3.93
3815 3894 0.107214 TTAGCATGTAGGCACAGGGC 60.107 55.000 0.00 0.00 38.30 5.19
3830 3909 2.889617 GGCACGCCCCAAATAACC 59.110 61.111 0.00 0.00 0.00 2.85
3832 3911 1.536943 GGCACGCCCCAAATAACCAA 61.537 55.000 0.00 0.00 0.00 3.67
3836 3915 0.599060 CGCCCCAAATAACCAAACGT 59.401 50.000 0.00 0.00 0.00 3.99
3839 3918 1.341531 CCCCAAATAACCAAACGTGCA 59.658 47.619 0.00 0.00 0.00 4.57
3843 3922 2.979813 CAAATAACCAAACGTGCAGCTC 59.020 45.455 0.00 0.00 0.00 4.09
3846 3925 1.102978 AACCAAACGTGCAGCTCTTT 58.897 45.000 0.00 0.00 0.00 2.52
3860 3939 4.874966 GCAGCTCTTTCTCTATGTTCATGT 59.125 41.667 0.00 0.00 0.00 3.21
3868 3947 5.134202 TCTCTATGTTCATGTTGTGTCGT 57.866 39.130 0.00 0.00 0.00 4.34
3888 3967 4.771577 TCGTGTAGGGTATTAACCTTGACA 59.228 41.667 5.40 2.34 45.95 3.58
3889 3968 4.866486 CGTGTAGGGTATTAACCTTGACAC 59.134 45.833 18.26 18.26 45.95 3.67
3890 3969 5.337009 CGTGTAGGGTATTAACCTTGACACT 60.337 44.000 22.65 0.00 45.95 3.55
3891 3970 6.104665 GTGTAGGGTATTAACCTTGACACTC 58.895 44.000 19.94 5.89 45.95 3.51
3892 3971 5.781306 TGTAGGGTATTAACCTTGACACTCA 59.219 40.000 5.40 0.00 45.95 3.41
3893 3972 5.161943 AGGGTATTAACCTTGACACTCAC 57.838 43.478 0.00 0.00 45.95 3.51
3894 3973 4.595781 AGGGTATTAACCTTGACACTCACA 59.404 41.667 0.00 0.00 45.95 3.58
3895 3974 4.935808 GGGTATTAACCTTGACACTCACAG 59.064 45.833 0.00 0.00 45.95 3.66
3896 3975 5.512576 GGGTATTAACCTTGACACTCACAGT 60.513 44.000 0.00 0.00 45.95 3.55
3901 3980 2.293677 ACCTTGACACTCACAGTACTCG 59.706 50.000 0.00 0.00 0.00 4.18
3924 4003 3.995705 CAGTGTTTTGGTTTGCATATGGG 59.004 43.478 4.56 0.00 0.00 4.00
3962 4041 3.181466 ACTGTGTCTGTTGATGCTGTGTA 60.181 43.478 0.00 0.00 0.00 2.90
3988 4067 4.577988 TGGCCTGCTGTTTTTACCTATA 57.422 40.909 3.32 0.00 0.00 1.31
3997 4076 8.568676 TGCTGTTTTTACCTATAATTGCACTA 57.431 30.769 0.00 0.00 0.00 2.74
4030 4109 2.479275 GCGTCTTGTTTCCTTCTACCAC 59.521 50.000 0.00 0.00 0.00 4.16
4059 4138 4.915298 CAGCTCCACTGCTCTCTG 57.085 61.111 0.00 0.00 41.98 3.35
4084 4163 6.068473 TGTCAATCTCATCATTGCTAATGC 57.932 37.500 4.56 0.00 38.77 3.56
4161 4240 8.006298 TGGAAAATTTTACTGTCTTGTGTGAT 57.994 30.769 14.21 0.00 0.00 3.06
4163 4242 9.612620 GGAAAATTTTACTGTCTTGTGTGATAG 57.387 33.333 5.85 0.00 0.00 2.08
4193 4272 8.615878 TTTTACTGATACAAGCATTACACAGT 57.384 30.769 0.00 0.00 39.90 3.55
4194 4273 7.595311 TTACTGATACAAGCATTACACAGTG 57.405 36.000 0.00 0.00 37.78 3.66
4195 4274 4.937620 ACTGATACAAGCATTACACAGTGG 59.062 41.667 5.31 0.00 36.29 4.00
4196 4275 5.159273 TGATACAAGCATTACACAGTGGA 57.841 39.130 5.31 0.00 0.00 4.02
4197 4276 5.555966 TGATACAAGCATTACACAGTGGAA 58.444 37.500 0.00 0.00 0.00 3.53
4199 4278 3.149196 ACAAGCATTACACAGTGGAAGG 58.851 45.455 5.75 5.75 0.00 3.46
4200 4279 2.489329 CAAGCATTACACAGTGGAAGGG 59.511 50.000 12.11 4.15 0.00 3.95
4201 4280 1.004745 AGCATTACACAGTGGAAGGGG 59.995 52.381 12.11 1.71 0.00 4.79
4202 4281 1.004277 GCATTACACAGTGGAAGGGGA 59.996 52.381 12.11 0.00 0.00 4.81
4203 4282 2.941415 GCATTACACAGTGGAAGGGGAG 60.941 54.545 12.11 0.00 0.00 4.30
4205 4284 1.198759 TACACAGTGGAAGGGGAGCC 61.199 60.000 5.31 0.00 0.00 4.70
4206 4285 2.208349 ACAGTGGAAGGGGAGCCT 59.792 61.111 0.00 0.00 0.00 4.58
4207 4286 1.464198 ACAGTGGAAGGGGAGCCTT 60.464 57.895 0.00 0.00 0.00 4.35
4208 4287 1.001641 CAGTGGAAGGGGAGCCTTG 60.002 63.158 0.00 0.00 0.00 3.61
4209 4288 2.234296 AGTGGAAGGGGAGCCTTGG 61.234 63.158 0.00 0.00 0.00 3.61
4210 4289 3.661648 TGGAAGGGGAGCCTTGGC 61.662 66.667 2.97 2.97 0.00 4.52
4221 4300 2.322081 GCCTTGGCGCAGTCGTAAA 61.322 57.895 10.83 0.00 38.14 2.01
4223 4302 1.132640 CTTGGCGCAGTCGTAAAGC 59.867 57.895 10.83 0.00 38.14 3.51
4224 4303 1.291877 CTTGGCGCAGTCGTAAAGCT 61.292 55.000 10.83 0.00 38.14 3.74
4230 4309 1.790387 CAGTCGTAAAGCTGCTGCC 59.210 57.895 12.44 0.00 40.80 4.85
4232 4311 0.035458 AGTCGTAAAGCTGCTGCCTT 59.965 50.000 12.44 8.34 40.80 4.35
4233 4312 0.166814 GTCGTAAAGCTGCTGCCTTG 59.833 55.000 12.44 0.00 40.80 3.61
4234 4313 0.250295 TCGTAAAGCTGCTGCCTTGT 60.250 50.000 12.44 0.00 40.80 3.16
4235 4314 0.110056 CGTAAAGCTGCTGCCTTGTG 60.110 55.000 12.44 0.00 40.80 3.33
4236 4315 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
4237 4316 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
4238 4317 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
4239 4318 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
4240 4319 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
4241 4320 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
4242 4321 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
4243 4322 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
4244 4323 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
4266 4345 2.445145 TCATGGGTTCAAGTCCTGGAAA 59.555 45.455 0.00 0.00 0.00 3.13
4267 4346 2.358322 TGGGTTCAAGTCCTGGAAAC 57.642 50.000 0.00 0.00 0.00 2.78
4268 4347 1.566703 TGGGTTCAAGTCCTGGAAACA 59.433 47.619 0.00 0.00 32.36 2.83
4282 4361 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
4284 4363 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
4287 4366 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
4288 4367 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
4290 4369 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
4292 4371 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
4295 4374 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
4297 4376 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
4299 4378 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
4300 4379 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
4301 4380 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
4302 4381 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
4303 4382 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
4304 4383 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
4305 4384 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
4306 4385 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
4307 4386 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
4308 4387 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
4309 4388 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
4310 4389 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
4311 4390 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
4312 4391 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
4313 4392 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
4314 4393 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
4315 4394 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
4316 4395 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
4317 4396 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
4318 4397 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
4319 4398 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
4324 4403 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
4325 4404 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
4326 4405 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
4327 4406 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
4328 4407 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
4329 4408 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
4330 4409 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
4331 4410 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
4332 4411 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
4333 4412 2.606519 TGGTCGGACCCTTCCCTG 60.607 66.667 23.81 0.00 38.99 4.45
4334 4413 3.400054 GGTCGGACCCTTCCCTGG 61.400 72.222 16.55 0.00 38.99 4.45
4335 4414 2.284405 GTCGGACCCTTCCCTGGA 60.284 66.667 0.00 0.00 38.99 3.86
4336 4415 2.284405 TCGGACCCTTCCCTGGAC 60.284 66.667 0.00 0.00 38.99 4.02
4337 4416 3.400054 CGGACCCTTCCCTGGACC 61.400 72.222 0.00 0.00 38.99 4.46
4338 4417 3.015753 GGACCCTTCCCTGGACCC 61.016 72.222 0.00 0.00 35.57 4.46
4339 4418 2.125225 GACCCTTCCCTGGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
4340 4419 2.204151 ACCCTTCCCTGGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
4341 4420 3.732849 CCCTTCCCTGGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
4342 4421 4.101448 CCTTCCCTGGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
4343 4422 4.785453 CTTCCCTGGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
4368 4447 3.558674 GAGCTACATGCACCAGGTT 57.441 52.632 0.00 0.00 45.94 3.50
4369 4448 1.089920 GAGCTACATGCACCAGGTTG 58.910 55.000 0.00 0.00 45.94 3.77
4370 4449 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17
4371 4450 1.937546 GCTACATGCACCAGGTTGCC 61.938 60.000 10.46 0.00 39.88 4.52
4372 4451 1.304052 TACATGCACCAGGTTGCCC 60.304 57.895 10.46 0.00 42.25 5.36
4373 4452 1.788518 TACATGCACCAGGTTGCCCT 61.789 55.000 10.46 0.00 42.25 5.19
4374 4453 1.909781 CATGCACCAGGTTGCCCTT 60.910 57.895 10.46 0.00 42.25 3.95
4375 4454 1.152269 ATGCACCAGGTTGCCCTTT 60.152 52.632 10.46 0.00 42.25 3.11
4376 4455 0.763986 ATGCACCAGGTTGCCCTTTT 60.764 50.000 10.46 0.00 42.25 2.27
4377 4456 0.980231 TGCACCAGGTTGCCCTTTTT 60.980 50.000 10.46 0.00 42.25 1.94
4431 4510 0.670162 ACTTGTGCAGTGCCATGTTC 59.330 50.000 13.72 0.00 32.83 3.18
4455 4536 8.984891 TCATTGTGATTTGCTTGTATTTTAGG 57.015 30.769 0.00 0.00 0.00 2.69
4458 4539 6.155827 TGTGATTTGCTTGTATTTTAGGTGC 58.844 36.000 0.00 0.00 0.00 5.01
4463 4544 4.316645 TGCTTGTATTTTAGGTGCACGTA 58.683 39.130 14.99 14.99 0.00 3.57
4515 4608 1.484038 TGTTTTTGTGGGAGCAGCTT 58.516 45.000 0.00 0.00 0.00 3.74
4564 4657 4.379243 CAGAACCCGCAGCCGACT 62.379 66.667 0.00 0.00 36.29 4.18
4691 4802 4.083862 GGACGGTGGTCTCTGCCC 62.084 72.222 0.00 0.00 42.97 5.36
5465 5585 0.521291 AACGCATTGATTGACGTGGG 59.479 50.000 0.00 0.00 37.86 4.61
5497 5617 2.954684 AATTGGGCCTCGTCGCAGA 61.955 57.895 4.53 0.00 0.00 4.26
5498 5618 2.463589 AATTGGGCCTCGTCGCAGAA 62.464 55.000 4.53 0.00 39.69 3.02
5499 5619 2.859273 ATTGGGCCTCGTCGCAGAAG 62.859 60.000 4.53 0.00 39.69 2.85
5546 5666 5.079643 AGAATGGTCTTGGTTTGCTAATGT 58.920 37.500 0.00 0.00 0.00 2.71
5567 5687 4.277423 TGTTAGCTTGTAGGGCTTTTGTTC 59.723 41.667 0.00 0.00 40.74 3.18
5596 5716 4.912317 GTTCCTTTAACCCTCTTCTCCT 57.088 45.455 0.00 0.00 31.38 3.69
5606 5728 2.765699 CCCTCTTCTCCTTCTTCCTCTG 59.234 54.545 0.00 0.00 0.00 3.35
5611 5733 3.944055 TCTCCTTCTTCCTCTGTTTCG 57.056 47.619 0.00 0.00 0.00 3.46
5619 5741 2.543777 TCCTCTGTTTCGGTTCAAGG 57.456 50.000 0.00 0.00 0.00 3.61
5750 5873 0.297820 GCGATGTCGTTCGATTGGAC 59.702 55.000 4.20 4.58 41.62 4.02
5796 5921 6.322491 GGAAAGTGATTTGCGCTTAAATACT 58.678 36.000 9.73 8.84 46.17 2.12
5797 5922 6.806739 GGAAAGTGATTTGCGCTTAAATACTT 59.193 34.615 9.73 13.68 46.17 2.24
5817 5942 1.135402 TGTGTGTCGTCTGATGATCGG 60.135 52.381 2.42 0.00 0.00 4.18
5839 5964 5.591099 GGTTCTTTGAGCTGAAAACATTCA 58.409 37.500 0.00 0.00 0.00 2.57
5845 5970 7.703621 TCTTTGAGCTGAAAACATTCAAGAAAG 59.296 33.333 0.00 0.00 0.00 2.62
5847 5972 5.068198 TGAGCTGAAAACATTCAAGAAAGCT 59.932 36.000 0.00 3.37 32.47 3.74
5862 5987 8.261492 TCAAGAAAGCTGATGAAAGACTTATC 57.739 34.615 0.00 0.00 0.00 1.75
5989 6114 6.598503 AGAATCAGAAATCTGCATGGTGATA 58.401 36.000 5.53 0.00 43.46 2.15
6024 6151 6.875972 TTTTAGATTAACAGGGAGAGCTCT 57.124 37.500 18.28 18.28 0.00 4.09
6051 6178 5.235186 CGACTCCATTTGTATAAGAAGCCTG 59.765 44.000 0.00 0.00 0.00 4.85
6059 6186 5.209818 TGTATAAGAAGCCTGAATACCGG 57.790 43.478 0.00 0.00 0.00 5.28
6060 6187 3.771577 ATAAGAAGCCTGAATACCGGG 57.228 47.619 6.32 0.00 44.49 5.73
6061 6188 1.286248 AAGAAGCCTGAATACCGGGT 58.714 50.000 6.32 4.46 43.53 5.28
6062 6189 0.831307 AGAAGCCTGAATACCGGGTC 59.169 55.000 6.32 0.00 43.53 4.46
6063 6190 0.831307 GAAGCCTGAATACCGGGTCT 59.169 55.000 6.32 0.00 43.53 3.85
6064 6191 0.541863 AAGCCTGAATACCGGGTCTG 59.458 55.000 6.32 4.19 43.53 3.51
6065 6192 0.325296 AGCCTGAATACCGGGTCTGA 60.325 55.000 6.32 0.00 43.53 3.27
6066 6193 0.759346 GCCTGAATACCGGGTCTGAT 59.241 55.000 6.32 0.00 43.53 2.90
6067 6194 1.968493 GCCTGAATACCGGGTCTGATA 59.032 52.381 6.32 0.00 43.53 2.15
6068 6195 2.288886 GCCTGAATACCGGGTCTGATAC 60.289 54.545 6.32 0.00 43.53 2.24
6069 6196 2.963101 CCTGAATACCGGGTCTGATACA 59.037 50.000 6.32 0.00 36.52 2.29
6070 6197 3.386726 CCTGAATACCGGGTCTGATACAA 59.613 47.826 6.32 0.00 36.52 2.41
6071 6198 4.501571 CCTGAATACCGGGTCTGATACAAG 60.502 50.000 6.32 0.00 36.52 3.16
6072 6199 3.386726 TGAATACCGGGTCTGATACAAGG 59.613 47.826 6.32 0.00 33.75 3.61
6073 6200 1.784358 TACCGGGTCTGATACAAGGG 58.216 55.000 6.32 0.00 32.33 3.95
6074 6201 0.252558 ACCGGGTCTGATACAAGGGT 60.253 55.000 6.32 0.00 32.33 4.34
6075 6202 0.464452 CCGGGTCTGATACAAGGGTC 59.536 60.000 0.00 0.00 0.00 4.46
6076 6203 0.464452 CGGGTCTGATACAAGGGTCC 59.536 60.000 0.00 0.00 0.00 4.46
6077 6204 1.580059 GGGTCTGATACAAGGGTCCA 58.420 55.000 0.00 0.00 0.00 4.02
6078 6205 1.913419 GGGTCTGATACAAGGGTCCAA 59.087 52.381 0.00 0.00 0.00 3.53
6079 6206 2.307686 GGGTCTGATACAAGGGTCCAAA 59.692 50.000 0.00 0.00 0.00 3.28
6080 6207 3.245122 GGGTCTGATACAAGGGTCCAAAA 60.245 47.826 0.00 0.00 0.00 2.44
6081 6208 4.403734 GGTCTGATACAAGGGTCCAAAAA 58.596 43.478 0.00 0.00 0.00 1.94
6082 6209 4.217767 GGTCTGATACAAGGGTCCAAAAAC 59.782 45.833 0.00 0.00 0.00 2.43
6083 6210 4.217767 GTCTGATACAAGGGTCCAAAAACC 59.782 45.833 0.00 0.00 38.69 3.27
6084 6211 4.105697 TCTGATACAAGGGTCCAAAAACCT 59.894 41.667 0.00 0.00 39.42 3.50
6088 6215 6.661805 TGATACAAGGGTCCAAAAACCTTATC 59.338 38.462 0.00 0.00 42.46 1.75
6255 6382 1.935199 CATGCATGCATGTCGTAGTGA 59.065 47.619 40.30 10.25 46.20 3.41
6386 11343 9.713684 AGCTATTTAGATATAGAAGATGAGGCT 57.286 33.333 0.00 0.00 31.10 4.58
6396 11353 9.902684 ATATAGAAGATGAGGCTAAAATCATGG 57.097 33.333 0.00 0.00 36.30 3.66
6397 11354 6.257994 AGAAGATGAGGCTAAAATCATGGA 57.742 37.500 0.00 0.00 36.30 3.41
6398 11355 6.666678 AGAAGATGAGGCTAAAATCATGGAA 58.333 36.000 0.00 0.00 36.30 3.53
6399 11356 6.545298 AGAAGATGAGGCTAAAATCATGGAAC 59.455 38.462 0.00 0.00 36.30 3.62
6414 11371 8.625786 AATCATGGAACAATGATATTCGATGA 57.374 30.769 14.76 14.76 46.93 2.92
6415 11372 8.803397 ATCATGGAACAATGATATTCGATGAT 57.197 30.769 16.87 16.87 46.71 2.45
6418 11375 5.939883 TGGAACAATGATATTCGATGATCCC 59.060 40.000 6.73 0.94 33.45 3.85
6419 11376 5.063944 GGAACAATGATATTCGATGATCCCG 59.936 44.000 5.00 0.00 29.53 5.14
6420 11377 5.405935 ACAATGATATTCGATGATCCCGA 57.594 39.130 3.57 3.57 0.00 5.14
6421 11378 5.171476 ACAATGATATTCGATGATCCCGAC 58.829 41.667 6.78 0.00 35.61 4.79
6422 11379 3.868757 TGATATTCGATGATCCCGACC 57.131 47.619 6.78 0.00 35.61 4.79
6423 11380 3.431415 TGATATTCGATGATCCCGACCT 58.569 45.455 6.78 1.85 35.61 3.85
6424 11381 4.595986 TGATATTCGATGATCCCGACCTA 58.404 43.478 6.78 3.66 35.61 3.08
6425 11382 5.014202 TGATATTCGATGATCCCGACCTAA 58.986 41.667 6.78 0.00 35.61 2.69
6426 11383 5.479027 TGATATTCGATGATCCCGACCTAAA 59.521 40.000 6.78 0.00 35.61 1.85
6427 11384 4.682778 ATTCGATGATCCCGACCTAAAA 57.317 40.909 6.78 0.00 35.61 1.52
6428 11385 3.728076 TCGATGATCCCGACCTAAAAG 57.272 47.619 3.57 0.00 0.00 2.27
6429 11386 3.028850 TCGATGATCCCGACCTAAAAGT 58.971 45.455 3.57 0.00 0.00 2.66
6430 11387 3.449737 TCGATGATCCCGACCTAAAAGTT 59.550 43.478 3.57 0.00 0.00 2.66
6431 11388 4.081309 TCGATGATCCCGACCTAAAAGTTT 60.081 41.667 3.57 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
203 218 1.749258 AGCGGATTTTTCCTCGGCC 60.749 57.895 0.00 0.00 39.12 6.13
234 249 4.097361 GTCCTTGTCCTCGCCCCC 62.097 72.222 0.00 0.00 0.00 5.40
235 250 4.097361 GGTCCTTGTCCTCGCCCC 62.097 72.222 0.00 0.00 0.00 5.80
236 251 3.319198 TGGTCCTTGTCCTCGCCC 61.319 66.667 0.00 0.00 0.00 6.13
237 252 2.047179 GTGGTCCTTGTCCTCGCC 60.047 66.667 0.00 0.00 0.00 5.54
273 288 2.093306 TACCACCAGAAAGTCGCATG 57.907 50.000 0.00 0.00 0.00 4.06
391 412 2.998480 TGCCATTGCTTGCAGGGG 60.998 61.111 14.25 11.88 38.71 4.79
394 415 2.126228 CCGTGCCATTGCTTGCAG 60.126 61.111 0.00 0.00 38.34 4.41
409 430 2.751837 GGAAGGGGAAAGCTGCCG 60.752 66.667 0.00 0.00 32.63 5.69
478 499 6.183359 GCAAAACAGCACGTAATAATCACTTG 60.183 38.462 0.00 0.00 0.00 3.16
538 562 3.282885 CAGCTAAGGTGGGGAGAAAATC 58.717 50.000 0.00 0.00 0.00 2.17
569 593 6.042143 GCATGTAACCCAATAATTTCAGTGG 58.958 40.000 0.00 0.00 33.40 4.00
587 611 3.637694 CCATGGAATCATTGGTGCATGTA 59.362 43.478 5.56 0.00 0.00 2.29
591 615 2.380941 CTCCATGGAATCATTGGTGCA 58.619 47.619 17.00 0.00 0.00 4.57
606 630 4.079958 AGTTATTAAAAGGGACGGCTCCAT 60.080 41.667 0.00 0.00 38.52 3.41
720 745 1.302511 ACCACATGTTCTCCACGGC 60.303 57.895 0.00 0.00 0.00 5.68
735 760 1.545428 GCAGGAACCTCACATTCACCA 60.545 52.381 0.00 0.00 0.00 4.17
788 813 7.273381 GCTGCAACTTTTCGTGAATGTATTATT 59.727 33.333 0.00 0.00 0.00 1.40
789 814 6.747280 GCTGCAACTTTTCGTGAATGTATTAT 59.253 34.615 0.00 0.00 0.00 1.28
790 815 6.083630 GCTGCAACTTTTCGTGAATGTATTA 58.916 36.000 0.00 0.00 0.00 0.98
905 932 4.610605 TGGAGAATCAGAACCAACGTAA 57.389 40.909 0.00 0.00 36.25 3.18
908 935 4.330074 GTGTATGGAGAATCAGAACCAACG 59.670 45.833 0.00 0.00 36.25 4.10
924 951 9.201127 CAGTTAGATAATCACATGAGTGTATGG 57.799 37.037 0.00 0.00 46.01 2.74
933 960 8.604640 AGATTCAGCAGTTAGATAATCACATG 57.395 34.615 0.00 0.00 0.00 3.21
934 961 8.649591 AGAGATTCAGCAGTTAGATAATCACAT 58.350 33.333 0.00 0.00 0.00 3.21
969 996 2.093711 TCCTTAAGCGCATTACTCTGCA 60.094 45.455 11.47 0.00 42.40 4.41
1038 1065 2.545526 GACATCCGTGTTCATATGCTGG 59.454 50.000 0.00 0.00 39.09 4.85
1074 1101 2.169352 CTGAAGAAGGGATGACCGATGT 59.831 50.000 0.00 0.00 46.96 3.06
1185 1212 1.200519 CCTCGGGAAGGGTCACATAA 58.799 55.000 0.00 0.00 42.03 1.90
1362 1389 0.239347 CGGCAACTTTGGAAGAGCTG 59.761 55.000 0.00 0.55 34.91 4.24
1443 1470 2.791655 TCCTTCTCTAGCGACAAGACA 58.208 47.619 0.00 0.00 0.00 3.41
1686 1713 7.041167 CCATGTCTCTGTCTTAGATCACTAGAG 60.041 44.444 0.00 0.00 34.21 2.43
1860 1887 1.310933 CCCAGCTTCTTCGCAATGCT 61.311 55.000 2.94 0.00 0.00 3.79
1920 1947 1.795286 CTGTCAGCTTTGGTCGTCTTC 59.205 52.381 0.00 0.00 0.00 2.87
1958 1985 6.260714 GGTAAAAATAGTACATACCGTTGGGG 59.739 42.308 0.00 0.00 43.62 4.96
1983 2010 5.614308 TCAAATGCATCTATCAGTAGGGTG 58.386 41.667 0.00 0.00 0.00 4.61
2100 2130 9.169468 CATTCCGTTGCTTTACATAAATATCAC 57.831 33.333 0.00 0.00 0.00 3.06
2180 2210 6.109359 AGTCTGCATACAAGAATAACAGGAC 58.891 40.000 4.92 0.00 0.00 3.85
2188 2218 6.609212 TCTTCTAGGAGTCTGCATACAAGAAT 59.391 38.462 4.92 0.00 0.00 2.40
2327 2357 8.437274 TCTTTAGAGTAGGAGGATGTTTCTTT 57.563 34.615 0.00 0.00 0.00 2.52
2333 2363 5.735733 TCCTCTTTAGAGTAGGAGGATGT 57.264 43.478 6.47 0.00 46.24 3.06
2384 2414 6.520272 TGGTGGAATCTTAACCAAATTTGTG 58.480 36.000 16.73 10.58 40.97 3.33
2499 2529 6.323203 ACAATAAAGCCATACTGATCATGC 57.677 37.500 0.00 0.00 0.00 4.06
2568 2606 3.897141 TGGTGATAGCGTATGGTTTCA 57.103 42.857 3.52 3.52 32.34 2.69
2583 2621 9.460019 TTTGTCAATATTCATAGACATTGGTGA 57.540 29.630 7.06 0.00 40.32 4.02
2633 2671 8.560374 CAGGTACAAAAACTTTTTCCAACAAAA 58.440 29.630 0.00 0.00 0.00 2.44
2672 2710 3.875727 CTCCTGTCACAGAATTATGCCAG 59.124 47.826 6.30 4.28 32.44 4.85
2718 2756 3.772853 TTCAACAGCAGCCGCCTGT 62.773 57.895 0.00 0.00 41.26 4.00
2798 2836 4.222810 ACATCACATCACAAGGCTAGTGTA 59.777 41.667 0.00 0.00 38.16 2.90
2912 2950 2.482864 CCAAAATGAGGTGCAAACCAC 58.517 47.619 0.00 0.00 43.90 4.16
3115 3161 6.478512 TCCATCCCAAAATTTGCTAATACC 57.521 37.500 0.00 0.00 0.00 2.73
3117 3163 8.316497 TGAATCCATCCCAAAATTTGCTAATA 57.684 30.769 0.00 0.00 0.00 0.98
3189 3264 1.208535 AGTTGGGTTGAACTGTCGACA 59.791 47.619 18.88 18.88 39.64 4.35
3210 3285 3.139077 ACGGGACAAGTCTTTGATGAAC 58.861 45.455 0.00 0.00 37.73 3.18
3251 3326 2.976490 GCCATGTGGAGCTCTGGGT 61.976 63.158 18.51 0.00 37.39 4.51
3448 3523 0.469917 AGCATGATACCAACGGGGAG 59.530 55.000 0.00 0.00 41.15 4.30
3510 3585 0.250209 CGAGCTGGGCTGATAGCAAT 60.250 55.000 0.00 0.00 44.75 3.56
3520 3595 3.435186 GGCAGAAACGAGCTGGGC 61.435 66.667 0.00 0.00 34.00 5.36
3539 3614 2.347490 CACGGGTGGGGTCTCAAG 59.653 66.667 0.00 0.00 0.00 3.02
3591 3666 0.838122 AGCTAGGTTCCACCAGCACT 60.838 55.000 15.34 0.00 41.95 4.40
3592 3667 0.674895 CAGCTAGGTTCCACCAGCAC 60.675 60.000 15.34 0.00 41.95 4.40
3665 3740 5.248870 TCCAGCTTTCAAACTTTCAGTTC 57.751 39.130 0.00 0.00 37.47 3.01
3675 3750 2.099592 CAGCAGTGTTCCAGCTTTCAAA 59.900 45.455 0.00 0.00 36.26 2.69
3686 3763 4.515191 TGGTTATGAACTTCAGCAGTGTTC 59.485 41.667 0.00 9.43 40.09 3.18
3692 3769 6.479990 CGATAAGATGGTTATGAACTTCAGCA 59.520 38.462 0.00 0.00 0.00 4.41
3715 3792 0.241481 GGCAAAATTTACACCGCCGA 59.759 50.000 0.00 0.00 0.00 5.54
3721 3798 3.181535 CGGCAAATCGGCAAAATTTACAC 60.182 43.478 0.00 0.00 41.26 2.90
3722 3799 2.989840 CGGCAAATCGGCAAAATTTACA 59.010 40.909 0.00 0.00 41.26 2.41
3723 3800 2.990514 ACGGCAAATCGGCAAAATTTAC 59.009 40.909 0.00 0.00 41.26 2.01
3724 3801 2.989840 CACGGCAAATCGGCAAAATTTA 59.010 40.909 0.00 0.00 41.26 1.40
3728 3805 1.663074 GCACGGCAAATCGGCAAAA 60.663 52.632 0.00 0.00 41.26 2.44
3731 3809 2.046796 TAGCACGGCAAATCGGCA 60.047 55.556 0.00 0.00 41.26 5.69
3732 3810 1.366111 TTCTAGCACGGCAAATCGGC 61.366 55.000 0.00 0.00 0.00 5.54
3734 3812 2.774007 CTTTTCTAGCACGGCAAATCG 58.226 47.619 0.00 0.00 0.00 3.34
3768 3847 3.119029 CCATTTGATTCGACCCATTTGCT 60.119 43.478 0.00 0.00 0.00 3.91
3774 3853 1.633432 ACCTCCATTTGATTCGACCCA 59.367 47.619 0.00 0.00 0.00 4.51
3777 3856 5.758296 TGCTAATACCTCCATTTGATTCGAC 59.242 40.000 0.00 0.00 0.00 4.20
3780 3859 7.516198 ACATGCTAATACCTCCATTTGATTC 57.484 36.000 0.00 0.00 0.00 2.52
3815 3894 1.667467 CGTTTGGTTATTTGGGGCGTG 60.667 52.381 0.00 0.00 0.00 5.34
3825 3904 2.185004 AGAGCTGCACGTTTGGTTAT 57.815 45.000 1.02 0.00 0.00 1.89
3830 3909 1.869767 AGAGAAAGAGCTGCACGTTTG 59.130 47.619 1.02 0.00 0.00 2.93
3832 3911 3.257393 CATAGAGAAAGAGCTGCACGTT 58.743 45.455 1.02 0.00 0.00 3.99
3836 3915 4.541973 TGAACATAGAGAAAGAGCTGCA 57.458 40.909 1.02 0.00 0.00 4.41
3839 3918 6.370994 CACAACATGAACATAGAGAAAGAGCT 59.629 38.462 0.00 0.00 0.00 4.09
3843 3922 6.146184 ACGACACAACATGAACATAGAGAAAG 59.854 38.462 0.00 0.00 0.00 2.62
3846 3925 4.923281 CACGACACAACATGAACATAGAGA 59.077 41.667 0.00 0.00 0.00 3.10
3860 3939 4.527816 AGGTTAATACCCTACACGACACAA 59.472 41.667 0.00 0.00 46.28 3.33
3868 3947 5.781306 TGAGTGTCAAGGTTAATACCCTACA 59.219 40.000 0.00 0.00 46.28 2.74
3888 3967 1.319541 ACACTGCGAGTACTGTGAGT 58.680 50.000 15.74 5.07 40.73 3.41
3889 3968 2.423926 AACACTGCGAGTACTGTGAG 57.576 50.000 15.74 4.50 40.73 3.51
3890 3969 2.863740 CAAAACACTGCGAGTACTGTGA 59.136 45.455 15.74 0.00 40.73 3.58
3891 3970 2.032894 CCAAAACACTGCGAGTACTGTG 60.033 50.000 0.00 4.68 43.04 3.66
3892 3971 2.210116 CCAAAACACTGCGAGTACTGT 58.790 47.619 0.00 0.00 0.00 3.55
3893 3972 2.210116 ACCAAAACACTGCGAGTACTG 58.790 47.619 0.00 0.00 0.00 2.74
3894 3973 2.614829 ACCAAAACACTGCGAGTACT 57.385 45.000 0.00 0.00 0.00 2.73
3895 3974 3.359654 CAAACCAAAACACTGCGAGTAC 58.640 45.455 0.00 0.00 0.00 2.73
3896 3975 2.223386 GCAAACCAAAACACTGCGAGTA 60.223 45.455 0.00 0.00 0.00 2.59
3901 3980 3.432933 CCATATGCAAACCAAAACACTGC 59.567 43.478 0.00 0.00 0.00 4.40
3924 4003 3.243068 ACACAGTTCAGAAAAATGGTCGC 60.243 43.478 0.00 0.00 0.00 5.19
3931 4010 6.554419 CATCAACAGACACAGTTCAGAAAAA 58.446 36.000 0.00 0.00 0.00 1.94
3937 4016 2.874086 CAGCATCAACAGACACAGTTCA 59.126 45.455 0.00 0.00 0.00 3.18
3962 4041 1.648116 AAAAACAGCAGGCCATCCAT 58.352 45.000 5.01 0.00 33.74 3.41
3997 4076 1.270839 ACAAGACGCAGGTGCAAGTAT 60.271 47.619 2.33 0.00 42.21 2.12
4053 4132 4.388378 TGATGAGATTGACAGCAGAGAG 57.612 45.455 0.00 0.00 0.00 3.20
4054 4133 5.116882 CAATGATGAGATTGACAGCAGAGA 58.883 41.667 0.00 0.00 37.10 3.10
4059 4138 5.746307 TTAGCAATGATGAGATTGACAGC 57.254 39.130 0.00 0.00 35.65 4.40
4084 4163 3.125316 CAGTGGTTTGGAAAATGCTGTG 58.875 45.455 0.00 0.00 0.00 3.66
4094 4173 2.151502 TTTTCCAGCAGTGGTTTGGA 57.848 45.000 0.00 0.00 45.28 3.53
4135 4214 8.006298 TCACACAAGACAGTAAAATTTTCCAT 57.994 30.769 6.72 0.00 0.00 3.41
4168 4247 8.503196 CACTGTGTAATGCTTGTATCAGTAAAA 58.497 33.333 0.00 0.00 34.29 1.52
4170 4249 6.593770 CCACTGTGTAATGCTTGTATCAGTAA 59.406 38.462 7.08 0.00 34.29 2.24
4172 4251 4.937620 CCACTGTGTAATGCTTGTATCAGT 59.062 41.667 7.08 0.00 35.69 3.41
4173 4252 5.178061 TCCACTGTGTAATGCTTGTATCAG 58.822 41.667 7.08 0.00 0.00 2.90
4174 4253 5.159273 TCCACTGTGTAATGCTTGTATCA 57.841 39.130 7.08 0.00 0.00 2.15
4175 4254 5.065218 CCTTCCACTGTGTAATGCTTGTATC 59.935 44.000 7.08 0.00 0.00 2.24
4177 4256 4.323417 CCTTCCACTGTGTAATGCTTGTA 58.677 43.478 7.08 0.00 0.00 2.41
4178 4257 3.149196 CCTTCCACTGTGTAATGCTTGT 58.851 45.455 7.08 0.00 0.00 3.16
4179 4258 2.489329 CCCTTCCACTGTGTAATGCTTG 59.511 50.000 7.08 0.00 0.00 4.01
4182 4261 1.004277 TCCCCTTCCACTGTGTAATGC 59.996 52.381 7.08 0.00 0.00 3.56
4183 4262 2.941415 GCTCCCCTTCCACTGTGTAATG 60.941 54.545 7.08 0.00 0.00 1.90
4184 4263 1.282157 GCTCCCCTTCCACTGTGTAAT 59.718 52.381 7.08 0.00 0.00 1.89
4185 4264 0.690762 GCTCCCCTTCCACTGTGTAA 59.309 55.000 7.08 0.00 0.00 2.41
4187 4266 2.529744 GGCTCCCCTTCCACTGTGT 61.530 63.158 7.08 0.00 0.00 3.72
4188 4267 2.227036 AGGCTCCCCTTCCACTGTG 61.227 63.158 0.00 0.00 38.74 3.66
4201 4280 3.642778 TACGACTGCGCCAAGGCTC 62.643 63.158 4.18 1.20 42.48 4.70
4202 4281 2.725203 TTTACGACTGCGCCAAGGCT 62.725 55.000 4.18 0.00 42.48 4.58
4203 4282 2.240612 CTTTACGACTGCGCCAAGGC 62.241 60.000 4.18 0.00 42.48 4.35
4205 4284 1.132640 GCTTTACGACTGCGCCAAG 59.867 57.895 4.18 0.00 42.48 3.61
4206 4285 1.301401 AGCTTTACGACTGCGCCAA 60.301 52.632 4.18 0.00 42.48 4.52
4207 4286 2.027073 CAGCTTTACGACTGCGCCA 61.027 57.895 4.18 0.00 42.48 5.69
4208 4287 2.778679 CAGCTTTACGACTGCGCC 59.221 61.111 4.18 0.00 42.48 6.53
4215 4294 0.250295 ACAAGGCAGCAGCTTTACGA 60.250 50.000 0.00 0.00 38.07 3.43
4216 4295 0.110056 CACAAGGCAGCAGCTTTACG 60.110 55.000 0.00 0.00 38.07 3.18
4217 4296 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
4218 4297 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
4221 4300 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
4223 4302 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
4224 4303 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
4227 4306 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
4239 4318 2.025887 GGACTTGAACCCATGACCTCAT 60.026 50.000 0.00 0.00 36.96 2.90
4240 4319 1.351017 GGACTTGAACCCATGACCTCA 59.649 52.381 0.00 0.00 32.45 3.86
4241 4320 1.630878 AGGACTTGAACCCATGACCTC 59.369 52.381 0.00 0.00 37.82 3.85
4242 4321 1.352352 CAGGACTTGAACCCATGACCT 59.648 52.381 0.00 0.00 40.96 3.85
4243 4322 1.614317 CCAGGACTTGAACCCATGACC 60.614 57.143 0.00 0.00 34.29 4.02
4244 4323 1.351017 TCCAGGACTTGAACCCATGAC 59.649 52.381 0.00 0.00 0.00 3.06
4245 4324 1.741028 TCCAGGACTTGAACCCATGA 58.259 50.000 0.00 0.00 0.00 3.07
4246 4325 2.558359 GTTTCCAGGACTTGAACCCATG 59.442 50.000 0.00 0.00 0.00 3.66
4247 4326 2.176798 TGTTTCCAGGACTTGAACCCAT 59.823 45.455 0.00 0.00 0.00 4.00
4248 4327 1.566703 TGTTTCCAGGACTTGAACCCA 59.433 47.619 0.00 0.00 0.00 4.51
4249 4328 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
4250 4329 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
4251 4330 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
4252 4331 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
4272 4351 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
4275 4354 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
4277 4356 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
4280 4359 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
4281 4360 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
4282 4361 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
4284 4363 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
4287 4366 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
4288 4367 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
4290 4369 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
4292 4371 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
4295 4374 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
4297 4376 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
4308 4387 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
4309 4388 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
4310 4389 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
4311 4390 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
4312 4391 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
4313 4392 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
4314 4393 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
4315 4394 2.606826 AGGGAAGGGTCCGACCAC 60.607 66.667 19.43 8.70 46.04 4.16
4316 4395 2.606519 CAGGGAAGGGTCCGACCA 60.607 66.667 19.43 0.00 46.04 4.02
4317 4396 3.400054 CCAGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
4318 4397 2.284405 TCCAGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
4319 4398 2.284405 GTCCAGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
4320 4399 3.400054 GGTCCAGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
4321 4400 3.015753 GGGTCCAGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
4322 4401 2.125225 AGGGTCCAGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
4323 4402 2.204151 CAGGGTCCAGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
4324 4403 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
4325 4404 4.101448 CGCAGGGTCCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
4326 4405 4.785453 GCGCAGGGTCCAGGGAAG 62.785 72.222 0.30 0.00 0.00 3.46
4338 4417 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
4341 4420 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
4342 4421 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
4343 4422 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
4344 4423 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
4350 4429 1.089920 CAACCTGGTGCATGTAGCTC 58.910 55.000 14.15 0.00 45.94 4.09
4351 4430 0.962356 GCAACCTGGTGCATGTAGCT 60.962 55.000 14.15 0.00 44.29 3.32
4352 4431 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
4353 4432 2.183409 GGCAACCTGGTGCATGTAG 58.817 57.895 18.44 0.00 46.81 2.74
4354 4433 4.413928 GGCAACCTGGTGCATGTA 57.586 55.556 18.44 0.00 46.81 2.29
4397 4476 3.560068 GCACAAGTGTACAGTAAAGCACT 59.440 43.478 3.00 0.00 43.13 4.40
4398 4477 3.311322 TGCACAAGTGTACAGTAAAGCAC 59.689 43.478 15.67 0.00 0.00 4.40
4399 4478 3.536570 TGCACAAGTGTACAGTAAAGCA 58.463 40.909 15.67 15.67 0.00 3.91
4400 4479 4.133856 CTGCACAAGTGTACAGTAAAGC 57.866 45.455 3.00 8.66 35.30 3.51
4418 4497 1.270274 TCACAATGAACATGGCACTGC 59.730 47.619 0.00 0.00 0.00 4.40
4431 4510 8.649841 CACCTAAAATACAAGCAAATCACAATG 58.350 33.333 0.00 0.00 0.00 2.82
4455 4536 5.868257 TCAATCTCAAATCATTACGTGCAC 58.132 37.500 6.82 6.82 0.00 4.57
4515 4608 1.883732 GAGCTCACCTCAGCGTACA 59.116 57.895 9.40 0.00 44.82 2.90
4564 4657 1.301716 GGCGAGGAACTGCTCAACA 60.302 57.895 0.00 0.00 41.55 3.33
4691 4802 3.842923 AGCAGCCTCATCGTCCGG 61.843 66.667 0.00 0.00 0.00 5.14
4738 4849 0.036306 CGTTAACCCAGGACTTGGCT 59.964 55.000 0.00 0.00 46.32 4.75
4778 4889 0.321298 TTGTAGAGCCCGAAGCCAAC 60.321 55.000 0.00 0.00 45.47 3.77
4779 4890 0.321298 GTTGTAGAGCCCGAAGCCAA 60.321 55.000 0.00 0.00 45.47 4.52
5008 5122 3.597728 CTCTCCTCCGCGCCTACC 61.598 72.222 0.00 0.00 0.00 3.18
5453 5573 1.349357 TCACAATCCCCACGTCAATCA 59.651 47.619 0.00 0.00 0.00 2.57
5454 5574 2.009774 CTCACAATCCCCACGTCAATC 58.990 52.381 0.00 0.00 0.00 2.67
5455 5575 1.340017 CCTCACAATCCCCACGTCAAT 60.340 52.381 0.00 0.00 0.00 2.57
5456 5576 0.036164 CCTCACAATCCCCACGTCAA 59.964 55.000 0.00 0.00 0.00 3.18
5465 5585 0.826062 CCAATTGGGCCTCACAATCC 59.174 55.000 17.36 0.00 37.55 3.01
5497 5617 2.487086 GGCCCAAACAAATCCAAAGCTT 60.487 45.455 0.00 0.00 0.00 3.74
5498 5618 1.072173 GGCCCAAACAAATCCAAAGCT 59.928 47.619 0.00 0.00 0.00 3.74
5499 5619 1.202746 TGGCCCAAACAAATCCAAAGC 60.203 47.619 0.00 0.00 0.00 3.51
5546 5666 3.500680 CGAACAAAAGCCCTACAAGCTAA 59.499 43.478 0.00 0.00 40.49 3.09
5596 5716 3.830744 TGAACCGAAACAGAGGAAGAA 57.169 42.857 0.00 0.00 0.00 2.52
5796 5921 2.595386 CGATCATCAGACGACACACAA 58.405 47.619 0.00 0.00 0.00 3.33
5797 5922 1.135402 CCGATCATCAGACGACACACA 60.135 52.381 0.00 0.00 0.00 3.72
5817 5942 6.974622 TCTTGAATGTTTTCAGCTCAAAGAAC 59.025 34.615 0.00 0.00 42.60 3.01
5839 5964 7.336427 CCAGATAAGTCTTTCATCAGCTTTCTT 59.664 37.037 0.00 0.00 30.42 2.52
5845 5970 5.065731 CCAACCAGATAAGTCTTTCATCAGC 59.934 44.000 0.00 0.00 30.42 4.26
5847 5972 4.943705 GCCAACCAGATAAGTCTTTCATCA 59.056 41.667 0.00 0.00 30.42 3.07
5862 5987 2.219458 CATAGCAGAGATGCCAACCAG 58.781 52.381 0.00 0.00 34.90 4.00
5970 6095 6.262496 ACAAGATATCACCATGCAGATTTCTG 59.738 38.462 14.57 3.13 46.40 3.02
6024 6151 5.684030 GCTTCTTATACAAATGGAGTCGGGA 60.684 44.000 0.00 0.00 0.00 5.14
6028 6155 6.349300 TCAGGCTTCTTATACAAATGGAGTC 58.651 40.000 0.00 0.00 0.00 3.36
6051 6178 3.244112 CCCTTGTATCAGACCCGGTATTC 60.244 52.174 0.00 0.00 0.00 1.75
6059 6186 3.713826 TTTGGACCCTTGTATCAGACC 57.286 47.619 0.00 0.00 0.00 3.85
6060 6187 4.217767 GGTTTTTGGACCCTTGTATCAGAC 59.782 45.833 0.00 0.00 33.41 3.51
6061 6188 4.105697 AGGTTTTTGGACCCTTGTATCAGA 59.894 41.667 0.00 0.00 40.73 3.27
6062 6189 4.407365 AGGTTTTTGGACCCTTGTATCAG 58.593 43.478 0.00 0.00 40.73 2.90
6063 6190 4.463050 AGGTTTTTGGACCCTTGTATCA 57.537 40.909 0.00 0.00 40.73 2.15
6064 6191 6.661805 TGATAAGGTTTTTGGACCCTTGTATC 59.338 38.462 0.00 0.00 40.73 2.24
6065 6192 6.557568 TGATAAGGTTTTTGGACCCTTGTAT 58.442 36.000 0.00 0.00 40.73 2.29
6066 6193 5.954757 TGATAAGGTTTTTGGACCCTTGTA 58.045 37.500 0.00 0.00 40.73 2.41
6067 6194 4.810345 TGATAAGGTTTTTGGACCCTTGT 58.190 39.130 0.00 0.00 40.73 3.16
6068 6195 5.304357 AGTTGATAAGGTTTTTGGACCCTTG 59.696 40.000 0.00 0.00 40.73 3.61
6069 6196 5.464069 AGTTGATAAGGTTTTTGGACCCTT 58.536 37.500 0.00 0.00 40.73 3.95
6070 6197 5.074746 AGTTGATAAGGTTTTTGGACCCT 57.925 39.130 0.00 0.00 40.73 4.34
6071 6198 6.243148 TCTAGTTGATAAGGTTTTTGGACCC 58.757 40.000 0.00 0.00 40.73 4.46
6072 6199 7.610305 TCATCTAGTTGATAAGGTTTTTGGACC 59.390 37.037 0.00 0.00 35.45 4.46
6073 6200 8.561738 TCATCTAGTTGATAAGGTTTTTGGAC 57.438 34.615 0.00 0.00 33.36 4.02
6074 6201 9.177608 CATCATCTAGTTGATAAGGTTTTTGGA 57.822 33.333 14.52 0.00 34.59 3.53
6075 6202 7.917505 GCATCATCTAGTTGATAAGGTTTTTGG 59.082 37.037 14.52 2.25 34.59 3.28
6076 6203 7.917505 GGCATCATCTAGTTGATAAGGTTTTTG 59.082 37.037 14.52 4.09 34.59 2.44
6077 6204 7.068716 GGGCATCATCTAGTTGATAAGGTTTTT 59.931 37.037 14.52 0.00 34.59 1.94
6078 6205 6.547510 GGGCATCATCTAGTTGATAAGGTTTT 59.452 38.462 14.52 0.00 34.59 2.43
6079 6206 6.064717 GGGCATCATCTAGTTGATAAGGTTT 58.935 40.000 14.52 0.00 34.59 3.27
6080 6207 5.456763 GGGGCATCATCTAGTTGATAAGGTT 60.457 44.000 14.52 0.00 34.59 3.50
6081 6208 4.042187 GGGGCATCATCTAGTTGATAAGGT 59.958 45.833 14.52 0.00 34.59 3.50
6082 6209 4.583871 GGGGCATCATCTAGTTGATAAGG 58.416 47.826 14.52 5.82 34.59 2.69
6083 6210 4.248859 CGGGGCATCATCTAGTTGATAAG 58.751 47.826 14.52 6.42 34.59 1.73
6084 6211 3.557054 GCGGGGCATCATCTAGTTGATAA 60.557 47.826 14.52 0.00 34.59 1.75
6088 6215 0.179048 TGCGGGGCATCATCTAGTTG 60.179 55.000 0.00 0.00 31.71 3.16
6381 11338 6.455360 TCATTGTTCCATGATTTTAGCCTC 57.545 37.500 0.00 0.00 0.00 4.70
6382 11339 8.716674 ATATCATTGTTCCATGATTTTAGCCT 57.283 30.769 0.00 0.00 38.37 4.58
6383 11340 9.415544 GAATATCATTGTTCCATGATTTTAGCC 57.584 33.333 0.00 0.00 38.37 3.93
6384 11341 9.121517 CGAATATCATTGTTCCATGATTTTAGC 57.878 33.333 0.00 0.00 38.37 3.09
6387 11344 9.687210 CATCGAATATCATTGTTCCATGATTTT 57.313 29.630 0.00 1.11 38.37 1.82
6388 11345 9.070179 TCATCGAATATCATTGTTCCATGATTT 57.930 29.630 0.00 0.00 38.37 2.17
6389 11346 8.625786 TCATCGAATATCATTGTTCCATGATT 57.374 30.769 0.00 0.00 38.37 2.57
6390 11347 8.803397 ATCATCGAATATCATTGTTCCATGAT 57.197 30.769 0.00 1.97 36.88 2.45
6391 11348 7.335171 GGATCATCGAATATCATTGTTCCATGA 59.665 37.037 11.23 0.00 35.93 3.07
6392 11349 7.414873 GGGATCATCGAATATCATTGTTCCATG 60.415 40.741 11.23 0.00 30.95 3.66
6393 11350 6.600822 GGGATCATCGAATATCATTGTTCCAT 59.399 38.462 11.23 0.00 30.95 3.41
6394 11351 5.939883 GGGATCATCGAATATCATTGTTCCA 59.060 40.000 11.23 0.00 30.95 3.53
6395 11352 5.063944 CGGGATCATCGAATATCATTGTTCC 59.936 44.000 11.23 6.98 0.00 3.62
6396 11353 5.869344 TCGGGATCATCGAATATCATTGTTC 59.131 40.000 7.75 0.00 33.42 3.18
6397 11354 5.639506 GTCGGGATCATCGAATATCATTGTT 59.360 40.000 11.13 0.00 38.42 2.83
6398 11355 5.171476 GTCGGGATCATCGAATATCATTGT 58.829 41.667 11.13 0.00 38.42 2.71
6399 11356 4.568359 GGTCGGGATCATCGAATATCATTG 59.432 45.833 11.13 0.00 38.42 2.82
6400 11357 4.467795 AGGTCGGGATCATCGAATATCATT 59.532 41.667 11.13 0.00 38.42 2.57
6401 11358 4.026744 AGGTCGGGATCATCGAATATCAT 58.973 43.478 11.13 0.00 38.42 2.45
6402 11359 3.431415 AGGTCGGGATCATCGAATATCA 58.569 45.455 11.13 0.00 38.42 2.15
6403 11360 5.578005 TTAGGTCGGGATCATCGAATATC 57.422 43.478 11.13 0.00 38.42 1.63
6404 11361 5.995565 TTTAGGTCGGGATCATCGAATAT 57.004 39.130 11.13 4.60 38.42 1.28
6405 11362 5.303589 ACTTTTAGGTCGGGATCATCGAATA 59.696 40.000 11.13 6.07 38.42 1.75
6406 11363 4.101119 ACTTTTAGGTCGGGATCATCGAAT 59.899 41.667 11.13 6.86 38.42 3.34
6407 11364 3.449737 ACTTTTAGGTCGGGATCATCGAA 59.550 43.478 11.13 0.00 38.42 3.71
6408 11365 3.028850 ACTTTTAGGTCGGGATCATCGA 58.971 45.455 6.34 6.34 0.00 3.59
6409 11366 3.454371 ACTTTTAGGTCGGGATCATCG 57.546 47.619 0.00 0.00 0.00 3.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.