Multiple sequence alignment - TraesCS5A01G302100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G302100 chr5A 100.000 5791 0 0 1 5791 510914544 510908754 0.000000e+00 10695.0
1 TraesCS5A01G302100 chr5B 95.995 4220 108 29 594 4778 482997691 483001884 0.000000e+00 6800.0
2 TraesCS5A01G302100 chr5B 91.501 553 28 11 4857 5391 483001887 483002438 0.000000e+00 743.0
3 TraesCS5A01G302100 chr5B 87.675 357 25 11 589 941 482987811 482988152 1.170000e-106 398.0
4 TraesCS5A01G302100 chr5B 82.828 396 38 16 3313 3708 576925546 576925911 1.560000e-85 327.0
5 TraesCS5A01G302100 chr5B 91.905 210 17 0 5389 5598 267547899 267548108 1.580000e-75 294.0
6 TraesCS5A01G302100 chr5B 92.432 185 9 2 5599 5778 483002428 483002612 5.760000e-65 259.0
7 TraesCS5A01G302100 chr5D 94.667 4144 155 22 8 4103 403061997 403066122 0.000000e+00 6368.0
8 TraesCS5A01G302100 chr5D 93.109 1306 59 17 4100 5391 403066244 403067532 0.000000e+00 1884.0
9 TraesCS5A01G302100 chr5D 87.975 158 7 5 5599 5744 403067522 403067679 5.960000e-40 176.0
10 TraesCS5A01G302100 chr5D 100.000 29 0 0 5750 5778 403067669 403067697 3.000000e-03 54.7
11 TraesCS5A01G302100 chr6B 88.645 546 59 3 2996 3539 214885006 214884462 0.000000e+00 662.0
12 TraesCS5A01G302100 chr7B 92.991 214 13 2 5386 5598 645396207 645395995 1.570000e-80 311.0
13 TraesCS5A01G302100 chr7B 91.228 228 14 3 5382 5604 733770772 733770546 7.290000e-79 305.0
14 TraesCS5A01G302100 chr7B 91.905 210 16 1 5389 5598 541957422 541957630 5.680000e-75 292.0
15 TraesCS5A01G302100 chr3B 93.333 210 14 0 5389 5598 62672649 62672440 1.570000e-80 311.0
16 TraesCS5A01G302100 chr2B 93.365 211 13 1 5389 5598 27548138 27547928 1.570000e-80 311.0
17 TraesCS5A01G302100 chr1B 92.381 210 16 0 5389 5598 643042827 643043036 3.390000e-77 300.0
18 TraesCS5A01G302100 chr1A 92.381 210 16 0 5389 5598 566517100 566517309 3.390000e-77 300.0
19 TraesCS5A01G302100 chr7A 91.981 212 16 1 5388 5598 608323542 608323753 4.390000e-76 296.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G302100 chr5A 510908754 510914544 5790 True 10695.000000 10695 100.000000 1 5791 1 chr5A.!!$R1 5790
1 TraesCS5A01G302100 chr5B 482997691 483002612 4921 False 2600.666667 6800 93.309333 594 5778 3 chr5B.!!$F4 5184
2 TraesCS5A01G302100 chr5D 403061997 403067697 5700 False 2120.675000 6368 93.937750 8 5778 4 chr5D.!!$F1 5770
3 TraesCS5A01G302100 chr6B 214884462 214885006 544 True 662.000000 662 88.645000 2996 3539 1 chr6B.!!$R1 543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
266 268 0.034767 CACATGATGTGCCCAGGTCT 60.035 55.000 13.15 0.0 41.89 3.85 F
517 526 0.250727 CCTCACATCCCAACACCGTT 60.251 55.000 0.00 0.0 0.00 4.44 F
976 1013 1.323412 CATCTCGAATCCCCTCTCGT 58.677 55.000 0.00 0.0 36.46 4.18 F
2072 2131 2.238395 AGAGCAACTGGGAAGGAGATTC 59.762 50.000 0.00 0.0 37.17 2.52 F
3128 3198 1.742768 CCCTACCATCCAGACTCGC 59.257 63.158 0.00 0.0 0.00 5.03 F
3885 3955 1.064463 CCAGGACTGGGCATGTGTTAT 60.064 52.381 10.55 0.0 46.81 1.89 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1958 2017 0.456221 TTCTCATCCCTCGACTTCGC 59.544 55.000 0.00 0.00 39.6 4.70 R
2072 2131 4.482386 CCAGCAGTCATTTCAATTGTCTG 58.518 43.478 5.13 7.11 0.0 3.51 R
2777 2836 4.463539 TCCAAAACATGCATAATCACAGCT 59.536 37.500 0.00 0.00 0.0 4.24 R
3308 3378 5.221126 GCCTATCCAGATTTTTCATGTGACC 60.221 44.000 0.00 0.00 0.0 4.02 R
4561 4761 1.145738 ACAACTTCAAGAGGGGCATGT 59.854 47.619 0.00 0.00 0.0 3.21 R
5593 5812 0.040425 CTTGCTCCCAAAAACGGACG 60.040 55.000 0.00 0.00 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.811557 GGGTTGTCTTAGAATTCCTCATCG 59.188 45.833 0.65 0.00 0.00 3.84
32 33 8.651389 TGTCTTAGAATTCCTCATCGGATAAAT 58.349 33.333 0.65 0.00 42.70 1.40
41 42 8.518430 TTCCTCATCGGATAAATCAATGAAAA 57.482 30.769 0.00 4.64 42.70 2.29
42 43 7.930217 TCCTCATCGGATAAATCAATGAAAAC 58.070 34.615 0.00 0.00 36.69 2.43
44 45 8.355169 CCTCATCGGATAAATCAATGAAAACAT 58.645 33.333 0.00 0.00 33.21 2.71
45 46 9.390795 CTCATCGGATAAATCAATGAAAACATC 57.609 33.333 0.00 0.00 33.21 3.06
46 47 8.069574 TCATCGGATAAATCAATGAAAACATCG 58.930 33.333 0.00 0.00 31.67 3.84
47 48 7.315247 TCGGATAAATCAATGAAAACATCGT 57.685 32.000 0.00 0.00 0.00 3.73
48 49 7.406553 TCGGATAAATCAATGAAAACATCGTC 58.593 34.615 0.00 0.00 0.00 4.20
49 50 7.279981 TCGGATAAATCAATGAAAACATCGTCT 59.720 33.333 0.00 0.00 0.00 4.18
50 51 7.374228 CGGATAAATCAATGAAAACATCGTCTG 59.626 37.037 0.00 0.00 0.00 3.51
52 53 5.964958 AATCAATGAAAACATCGTCTGGT 57.035 34.783 0.00 0.00 0.00 4.00
53 54 5.964958 ATCAATGAAAACATCGTCTGGTT 57.035 34.783 0.00 0.00 35.87 3.67
54 55 5.356882 TCAATGAAAACATCGTCTGGTTC 57.643 39.130 0.00 0.00 32.04 3.62
55 56 4.819088 TCAATGAAAACATCGTCTGGTTCA 59.181 37.500 9.62 9.62 32.04 3.18
74 76 6.024049 GGTTCAAAAGTCGATTTGATGCTAG 58.976 40.000 13.43 0.00 45.77 3.42
77 79 5.931724 TCAAAAGTCGATTTGATGCTAGTGA 59.068 36.000 9.57 0.00 42.68 3.41
82 84 6.166279 AGTCGATTTGATGCTAGTGAAGAAA 58.834 36.000 0.00 0.00 0.00 2.52
86 88 6.019559 CGATTTGATGCTAGTGAAGAAATCGA 60.020 38.462 21.31 0.00 46.84 3.59
93 95 6.212235 TGCTAGTGAAGAAATCGATGAGATC 58.788 40.000 0.00 0.00 38.98 2.75
94 96 6.183360 TGCTAGTGAAGAAATCGATGAGATCA 60.183 38.462 0.00 0.00 38.98 2.92
98 100 7.917597 AGTGAAGAAATCGATGAGATCATTTG 58.082 34.615 0.00 0.00 38.98 2.32
107 109 7.854557 TCGATGAGATCATTTGAGTGAAATT 57.145 32.000 0.00 0.00 36.57 1.82
108 110 7.691158 TCGATGAGATCATTTGAGTGAAATTG 58.309 34.615 0.00 0.00 36.57 2.32
109 111 7.550196 TCGATGAGATCATTTGAGTGAAATTGA 59.450 33.333 0.00 0.00 36.57 2.57
110 112 8.343366 CGATGAGATCATTTGAGTGAAATTGAT 58.657 33.333 0.00 0.00 36.57 2.57
111 113 9.666626 GATGAGATCATTTGAGTGAAATTGATC 57.333 33.333 13.99 13.99 37.98 2.92
124 126 3.560636 AATTGATCCGTCACCCTTAGG 57.439 47.619 0.00 0.00 40.04 2.69
152 154 6.306987 ACACTAAGGATTGATGGTGAAAGTT 58.693 36.000 0.00 0.00 0.00 2.66
157 159 5.824421 AGGATTGATGGTGAAAGTTGATCT 58.176 37.500 0.00 0.00 0.00 2.75
201 203 4.120589 CGAAGGAAGGATAAGTAGGCAAC 58.879 47.826 0.00 0.00 0.00 4.17
228 230 4.039124 AGAACCTTGCGAAACAAATCCAAT 59.961 37.500 0.00 0.00 37.96 3.16
253 255 4.769688 AGTTGTGAGTTCAAGACACATGA 58.230 39.130 0.00 0.00 42.65 3.07
266 268 0.034767 CACATGATGTGCCCAGGTCT 60.035 55.000 13.15 0.00 41.89 3.85
268 270 1.487976 ACATGATGTGCCCAGGTCTAG 59.512 52.381 0.00 0.00 0.00 2.43
273 275 1.043116 TGTGCCCAGGTCTAGATCCG 61.043 60.000 0.00 0.00 0.00 4.18
281 283 3.305676 CCAGGTCTAGATCCGCAATACAG 60.306 52.174 0.00 0.00 0.00 2.74
285 287 2.628178 TCTAGATCCGCAATACAGGTGG 59.372 50.000 0.00 0.00 37.26 4.61
293 295 2.716217 GCAATACAGGTGGAAAGCTCT 58.284 47.619 0.00 0.00 0.00 4.09
294 296 3.678806 CGCAATACAGGTGGAAAGCTCTA 60.679 47.826 0.00 0.00 0.00 2.43
311 313 4.596643 AGCTCTACCTCATGCCTTATGAAT 59.403 41.667 0.00 0.00 44.84 2.57
320 322 6.583806 CCTCATGCCTTATGAATTTTATTCGC 59.416 38.462 0.00 0.00 44.84 4.70
337 339 2.028876 TCGCTCGAGGGAATACAATGA 58.971 47.619 27.88 3.72 33.89 2.57
357 359 9.935241 ACAATGATGAGTATATTCTATGGTGAC 57.065 33.333 0.00 0.00 0.00 3.67
374 376 0.532573 GACGGTGCTCCTCAAGATCA 59.467 55.000 2.85 0.00 0.00 2.92
391 393 5.282055 AGATCAATGTGACGGTCATATGT 57.718 39.130 19.17 9.90 28.42 2.29
398 400 1.404035 TGACGGTCATATGTGTCTCCG 59.596 52.381 6.76 17.96 39.21 4.63
415 417 2.604969 CCGACACGGTATGGTTTTTG 57.395 50.000 1.80 0.00 42.73 2.44
418 420 3.293262 CGACACGGTATGGTTTTTGTTG 58.707 45.455 0.00 0.00 0.00 3.33
419 421 3.242804 CGACACGGTATGGTTTTTGTTGT 60.243 43.478 0.00 0.00 0.00 3.32
420 422 4.284485 GACACGGTATGGTTTTTGTTGTC 58.716 43.478 0.00 0.00 0.00 3.18
421 423 3.242804 ACACGGTATGGTTTTTGTTGTCG 60.243 43.478 0.00 0.00 0.00 4.35
428 430 2.190161 GGTTTTTGTTGTCGTGGCTTC 58.810 47.619 0.00 0.00 0.00 3.86
430 432 3.065648 GGTTTTTGTTGTCGTGGCTTCTA 59.934 43.478 0.00 0.00 0.00 2.10
434 436 2.422597 TGTTGTCGTGGCTTCTAATGG 58.577 47.619 0.00 0.00 0.00 3.16
442 444 3.443681 CGTGGCTTCTAATGGATTTTGGT 59.556 43.478 0.00 0.00 0.00 3.67
504 513 5.415389 CACACATCATATTTGGAACCTCACA 59.585 40.000 0.00 0.00 0.00 3.58
508 517 4.792068 TCATATTTGGAACCTCACATCCC 58.208 43.478 0.00 0.00 34.68 3.85
516 525 1.374947 CCTCACATCCCAACACCGT 59.625 57.895 0.00 0.00 0.00 4.83
517 526 0.250727 CCTCACATCCCAACACCGTT 60.251 55.000 0.00 0.00 0.00 4.44
521 530 1.953686 CACATCCCAACACCGTTTCTT 59.046 47.619 0.00 0.00 0.00 2.52
525 534 2.567985 TCCCAACACCGTTTCTTTCTC 58.432 47.619 0.00 0.00 0.00 2.87
526 535 2.092861 TCCCAACACCGTTTCTTTCTCA 60.093 45.455 0.00 0.00 0.00 3.27
575 585 3.601443 GAGCATAACTCGGATGGCTAT 57.399 47.619 0.00 0.00 35.18 2.97
584 594 9.823647 CATAACTCGGATGGCTATATTTCTTAT 57.176 33.333 0.00 0.00 0.00 1.73
587 597 6.440647 ACTCGGATGGCTATATTTCTTATGGA 59.559 38.462 0.00 0.00 0.00 3.41
588 598 7.038302 ACTCGGATGGCTATATTTCTTATGGAA 60.038 37.037 0.00 0.00 0.00 3.53
589 599 7.685481 TCGGATGGCTATATTTCTTATGGAAA 58.315 34.615 0.00 0.00 46.33 3.13
677 697 4.835678 TCAGATGATGCATGTGTACAAGT 58.164 39.130 2.46 0.00 36.65 3.16
691 711 7.760131 TGTGTACAAGTGTTTAAGTCTGTAC 57.240 36.000 0.00 0.00 33.61 2.90
702 723 7.222611 GTGTTTAAGTCTGTACCGTGTTTCTAA 59.777 37.037 0.00 0.00 0.00 2.10
704 725 4.516365 AGTCTGTACCGTGTTTCTAAGG 57.484 45.455 0.00 0.00 0.00 2.69
714 735 5.826208 ACCGTGTTTCTAAGGAAAAATGTCT 59.174 36.000 0.00 0.00 42.22 3.41
742 763 6.265649 TGTCCAAAATTTCAAATCCGGTCTTA 59.734 34.615 0.00 0.00 0.00 2.10
828 849 3.135994 TCCGTCGGGAGAAAAAGAAAAG 58.864 45.455 12.29 0.00 42.89 2.27
976 1013 1.323412 CATCTCGAATCCCCTCTCGT 58.677 55.000 0.00 0.00 36.46 4.18
1380 1420 8.850156 GTGCCAGTGATAAATAAATTGGTAGAT 58.150 33.333 0.00 0.00 0.00 1.98
1483 1523 7.703621 GCCTAATCTGTGTTACTTATCGTGTAA 59.296 37.037 0.00 0.00 0.00 2.41
1958 2017 4.760047 CGGAACCACCAGCCTCGG 62.760 72.222 0.00 0.00 38.90 4.63
2072 2131 2.238395 AGAGCAACTGGGAAGGAGATTC 59.762 50.000 0.00 0.00 37.17 2.52
2338 2397 3.394274 TGGATCTTGTTGAGACAAAGGGA 59.606 43.478 0.00 0.00 44.65 4.20
2347 2406 5.478679 TGTTGAGACAAAGGGAAGTTTGAAA 59.521 36.000 3.44 0.00 39.40 2.69
2519 2578 3.815401 AGTTTGATTGAACACGGAGAAGG 59.185 43.478 0.00 0.00 31.94 3.46
2839 2900 7.486551 GCATAATTTTGGCACGTCACTAATTTA 59.513 33.333 0.00 0.00 0.00 1.40
2918 2987 6.881065 TCGTGTAGGAAGCTTAAGTAGTTCTA 59.119 38.462 0.00 0.00 0.00 2.10
2938 3007 9.841295 AGTTCTACAGGTGTAGTAAAATTTCAA 57.159 29.630 15.20 0.00 46.08 2.69
2998 3068 5.536161 ACTTCTGTAAATGACCATGCTGTTT 59.464 36.000 0.00 0.00 0.00 2.83
3128 3198 1.742768 CCCTACCATCCAGACTCGC 59.257 63.158 0.00 0.00 0.00 5.03
3885 3955 1.064463 CCAGGACTGGGCATGTGTTAT 60.064 52.381 10.55 0.00 46.81 1.89
4075 4146 8.573035 TGAAGCTTGGTTTAGTTTAAACTATGG 58.427 33.333 24.89 13.77 45.53 2.74
4183 4379 4.323104 GCTTACTGACTCCCATCTCAACTT 60.323 45.833 0.00 0.00 0.00 2.66
4206 4402 4.955811 TCAGTAGTGTTTGGATCTGTGT 57.044 40.909 0.00 0.00 0.00 3.72
4297 4495 5.833131 AGAGAAAGATAGTTTGGTTTTGGCA 59.167 36.000 0.00 0.00 0.00 4.92
4477 4677 1.613630 AACACCATCGCTCCCTCCT 60.614 57.895 0.00 0.00 0.00 3.69
4561 4761 1.765314 GAAGCTGGGCCTGAGAGAATA 59.235 52.381 15.36 0.00 0.00 1.75
4581 4781 1.145738 ACATGCCCCTCTTGAAGTTGT 59.854 47.619 0.00 0.00 0.00 3.32
4695 4895 0.731417 GATTGAGCTGTCGCAAGCAT 59.269 50.000 11.11 0.00 46.08 3.79
4699 4899 0.518636 GAGCTGTCGCAAGCATGAAA 59.481 50.000 11.11 0.00 46.08 2.69
4855 5056 6.096987 AGGTTATACATGTATAGCTGATCCGG 59.903 42.308 28.19 0.00 32.19 5.14
4979 5180 3.330701 AGGTCAGGCTTCATTTGTCCTTA 59.669 43.478 0.00 0.00 28.10 2.69
5130 5331 1.466167 GCATGCCAGTATATGCTTCGG 59.534 52.381 6.36 0.00 44.70 4.30
5142 5343 3.643159 ATGCTTCGGTGTTCCTTTTTC 57.357 42.857 0.00 0.00 0.00 2.29
5144 5350 3.020984 TGCTTCGGTGTTCCTTTTTCTT 58.979 40.909 0.00 0.00 0.00 2.52
5222 5432 1.211949 TGCTATAGCCACTTTCCCCAC 59.788 52.381 21.84 0.00 41.18 4.61
5241 5451 1.228094 TGGGAACGCATGCTTGTCA 60.228 52.632 17.13 4.90 0.00 3.58
5242 5452 1.236616 TGGGAACGCATGCTTGTCAG 61.237 55.000 17.13 0.80 0.00 3.51
5247 5457 1.538047 ACGCATGCTTGTCAGGAATT 58.462 45.000 17.13 0.00 0.00 2.17
5253 5463 4.156556 GCATGCTTGTCAGGAATTGAACTA 59.843 41.667 11.37 0.00 37.61 2.24
5264 5474 7.336931 GTCAGGAATTGAACTATTTTGGCTCTA 59.663 37.037 0.00 0.00 37.61 2.43
5280 5490 9.541143 TTTTGGCTCTAAATTTAGGTTTTCAAG 57.459 29.630 22.11 12.65 0.00 3.02
5286 5496 5.844301 AAATTTAGGTTTTCAAGCATGCG 57.156 34.783 13.01 0.00 0.00 4.73
5317 5535 5.892119 ACAATGCAGATCCATTCAGATTCTT 59.108 36.000 0.00 0.00 33.35 2.52
5322 5540 5.443283 CAGATCCATTCAGATTCTTTCCCA 58.557 41.667 0.00 0.00 0.00 4.37
5329 5547 2.005451 CAGATTCTTTCCCAGACGCAG 58.995 52.381 0.00 0.00 0.00 5.18
5356 5574 1.966451 AAGGAAGCGTGGAAAGGCG 60.966 57.895 0.00 0.00 0.00 5.52
5362 5580 1.081442 GCGTGGAAAGGCGAAAAGG 60.081 57.895 0.00 0.00 0.00 3.11
5363 5581 1.512156 GCGTGGAAAGGCGAAAAGGA 61.512 55.000 0.00 0.00 0.00 3.36
5365 5583 2.352388 CGTGGAAAGGCGAAAAGGATA 58.648 47.619 0.00 0.00 0.00 2.59
5366 5584 2.095372 CGTGGAAAGGCGAAAAGGATAC 59.905 50.000 0.00 0.00 0.00 2.24
5369 5588 2.422479 GGAAAGGCGAAAAGGATACCAC 59.578 50.000 0.00 0.00 37.17 4.16
5385 5604 1.816224 ACCACACGAGTGCTTGTTTTT 59.184 42.857 7.54 0.00 44.53 1.94
5388 5607 1.134175 ACACGAGTGCTTGTTTTTGGG 59.866 47.619 2.76 0.00 0.00 4.12
5389 5608 0.744281 ACGAGTGCTTGTTTTTGGGG 59.256 50.000 0.00 0.00 0.00 4.96
5390 5609 1.028905 CGAGTGCTTGTTTTTGGGGA 58.971 50.000 0.00 0.00 0.00 4.81
5391 5610 1.613437 CGAGTGCTTGTTTTTGGGGAT 59.387 47.619 0.00 0.00 0.00 3.85
5392 5611 2.351738 CGAGTGCTTGTTTTTGGGGATC 60.352 50.000 0.00 0.00 0.00 3.36
5393 5612 1.970640 AGTGCTTGTTTTTGGGGATCC 59.029 47.619 1.92 1.92 0.00 3.36
5394 5613 0.965439 TGCTTGTTTTTGGGGATCCG 59.035 50.000 5.45 0.00 35.24 4.18
5395 5614 0.246360 GCTTGTTTTTGGGGATCCGG 59.754 55.000 5.45 0.00 35.24 5.14
5396 5615 0.246360 CTTGTTTTTGGGGATCCGGC 59.754 55.000 5.45 0.00 35.24 6.13
5397 5616 0.178947 TTGTTTTTGGGGATCCGGCT 60.179 50.000 5.45 0.00 35.24 5.52
5398 5617 0.178947 TGTTTTTGGGGATCCGGCTT 60.179 50.000 5.45 0.00 35.24 4.35
5399 5618 0.246360 GTTTTTGGGGATCCGGCTTG 59.754 55.000 5.45 0.00 35.24 4.01
5400 5619 1.540435 TTTTTGGGGATCCGGCTTGC 61.540 55.000 5.45 0.00 35.24 4.01
5401 5620 3.955543 TTTGGGGATCCGGCTTGCC 62.956 63.158 5.45 0.48 35.24 4.52
5403 5622 4.883354 GGGGATCCGGCTTGCCTG 62.883 72.222 5.45 3.29 0.00 4.85
5405 5624 4.496336 GGATCCGGCTTGCCTGCT 62.496 66.667 10.12 0.00 0.00 4.24
5406 5625 2.899339 GATCCGGCTTGCCTGCTC 60.899 66.667 10.12 0.76 0.00 4.26
5407 5626 4.496336 ATCCGGCTTGCCTGCTCC 62.496 66.667 10.12 0.00 0.00 4.70
5411 5630 4.811364 GGCTTGCCTGCTCCCTCC 62.811 72.222 4.11 0.00 0.00 4.30
5412 5631 4.811364 GCTTGCCTGCTCCCTCCC 62.811 72.222 0.00 0.00 0.00 4.30
5413 5632 4.120755 CTTGCCTGCTCCCTCCCC 62.121 72.222 0.00 0.00 0.00 4.81
5415 5634 4.765970 TGCCTGCTCCCTCCCCAT 62.766 66.667 0.00 0.00 0.00 4.00
5416 5635 2.448542 GCCTGCTCCCTCCCCATA 60.449 66.667 0.00 0.00 0.00 2.74
5417 5636 2.823758 GCCTGCTCCCTCCCCATAC 61.824 68.421 0.00 0.00 0.00 2.39
5418 5637 1.074167 CCTGCTCCCTCCCCATACT 60.074 63.158 0.00 0.00 0.00 2.12
5419 5638 1.124477 CCTGCTCCCTCCCCATACTC 61.124 65.000 0.00 0.00 0.00 2.59
5420 5639 1.074471 TGCTCCCTCCCCATACTCC 60.074 63.158 0.00 0.00 0.00 3.85
5421 5640 1.843832 GCTCCCTCCCCATACTCCC 60.844 68.421 0.00 0.00 0.00 4.30
5422 5641 1.632164 CTCCCTCCCCATACTCCCA 59.368 63.158 0.00 0.00 0.00 4.37
5423 5642 0.194587 CTCCCTCCCCATACTCCCAT 59.805 60.000 0.00 0.00 0.00 4.00
5424 5643 0.193574 TCCCTCCCCATACTCCCATC 59.806 60.000 0.00 0.00 0.00 3.51
5425 5644 0.842467 CCCTCCCCATACTCCCATCC 60.842 65.000 0.00 0.00 0.00 3.51
5426 5645 1.194781 CCTCCCCATACTCCCATCCG 61.195 65.000 0.00 0.00 0.00 4.18
5427 5646 0.471971 CTCCCCATACTCCCATCCGT 60.472 60.000 0.00 0.00 0.00 4.69
5428 5647 0.861854 TCCCCATACTCCCATCCGTA 59.138 55.000 0.00 0.00 0.00 4.02
5429 5648 0.974383 CCCCATACTCCCATCCGTAC 59.026 60.000 0.00 0.00 0.00 3.67
5430 5649 1.482553 CCCCATACTCCCATCCGTACT 60.483 57.143 0.00 0.00 0.00 2.73
5431 5650 1.893801 CCCATACTCCCATCCGTACTC 59.106 57.143 0.00 0.00 0.00 2.59
5432 5651 2.491086 CCCATACTCCCATCCGTACTCT 60.491 54.545 0.00 0.00 0.00 3.24
5433 5652 2.820787 CCATACTCCCATCCGTACTCTC 59.179 54.545 0.00 0.00 0.00 3.20
5434 5653 3.487372 CATACTCCCATCCGTACTCTCA 58.513 50.000 0.00 0.00 0.00 3.27
5435 5654 1.765230 ACTCCCATCCGTACTCTCAC 58.235 55.000 0.00 0.00 0.00 3.51
5436 5655 1.285373 ACTCCCATCCGTACTCTCACT 59.715 52.381 0.00 0.00 0.00 3.41
5437 5656 2.291670 ACTCCCATCCGTACTCTCACTT 60.292 50.000 0.00 0.00 0.00 3.16
5438 5657 2.359531 CTCCCATCCGTACTCTCACTTC 59.640 54.545 0.00 0.00 0.00 3.01
5439 5658 2.100197 CCCATCCGTACTCTCACTTCA 58.900 52.381 0.00 0.00 0.00 3.02
5440 5659 2.695666 CCCATCCGTACTCTCACTTCAT 59.304 50.000 0.00 0.00 0.00 2.57
5441 5660 3.243569 CCCATCCGTACTCTCACTTCATC 60.244 52.174 0.00 0.00 0.00 2.92
5442 5661 3.243569 CCATCCGTACTCTCACTTCATCC 60.244 52.174 0.00 0.00 0.00 3.51
5443 5662 3.367646 TCCGTACTCTCACTTCATCCT 57.632 47.619 0.00 0.00 0.00 3.24
5444 5663 4.498894 TCCGTACTCTCACTTCATCCTA 57.501 45.455 0.00 0.00 0.00 2.94
5445 5664 4.197750 TCCGTACTCTCACTTCATCCTAC 58.802 47.826 0.00 0.00 0.00 3.18
5446 5665 3.002451 CCGTACTCTCACTTCATCCTACG 59.998 52.174 0.00 0.00 0.00 3.51
5447 5666 3.002451 CGTACTCTCACTTCATCCTACGG 59.998 52.174 0.00 0.00 0.00 4.02
5448 5667 3.088789 ACTCTCACTTCATCCTACGGT 57.911 47.619 0.00 0.00 0.00 4.83
5449 5668 3.432378 ACTCTCACTTCATCCTACGGTT 58.568 45.455 0.00 0.00 0.00 4.44
5450 5669 4.597004 ACTCTCACTTCATCCTACGGTTA 58.403 43.478 0.00 0.00 0.00 2.85
5451 5670 5.202004 ACTCTCACTTCATCCTACGGTTAT 58.798 41.667 0.00 0.00 0.00 1.89
5452 5671 5.299782 ACTCTCACTTCATCCTACGGTTATC 59.700 44.000 0.00 0.00 0.00 1.75
5453 5672 4.583489 TCTCACTTCATCCTACGGTTATCC 59.417 45.833 0.00 0.00 0.00 2.59
5454 5673 4.543689 TCACTTCATCCTACGGTTATCCT 58.456 43.478 0.00 0.00 0.00 3.24
5455 5674 4.960469 TCACTTCATCCTACGGTTATCCTT 59.040 41.667 0.00 0.00 0.00 3.36
5456 5675 5.424252 TCACTTCATCCTACGGTTATCCTTT 59.576 40.000 0.00 0.00 0.00 3.11
5457 5676 6.070424 TCACTTCATCCTACGGTTATCCTTTT 60.070 38.462 0.00 0.00 0.00 2.27
5458 5677 6.598064 CACTTCATCCTACGGTTATCCTTTTT 59.402 38.462 0.00 0.00 0.00 1.94
5459 5678 6.822170 ACTTCATCCTACGGTTATCCTTTTTC 59.178 38.462 0.00 0.00 0.00 2.29
5460 5679 5.677567 TCATCCTACGGTTATCCTTTTTCC 58.322 41.667 0.00 0.00 0.00 3.13
5461 5680 5.427481 TCATCCTACGGTTATCCTTTTTCCT 59.573 40.000 0.00 0.00 0.00 3.36
5462 5681 5.767277 TCCTACGGTTATCCTTTTTCCTT 57.233 39.130 0.00 0.00 0.00 3.36
5463 5682 6.130692 TCCTACGGTTATCCTTTTTCCTTT 57.869 37.500 0.00 0.00 0.00 3.11
5464 5683 6.545567 TCCTACGGTTATCCTTTTTCCTTTT 58.454 36.000 0.00 0.00 0.00 2.27
5465 5684 7.005902 TCCTACGGTTATCCTTTTTCCTTTTT 58.994 34.615 0.00 0.00 0.00 1.94
5466 5685 7.175467 TCCTACGGTTATCCTTTTTCCTTTTTC 59.825 37.037 0.00 0.00 0.00 2.29
5467 5686 6.092955 ACGGTTATCCTTTTTCCTTTTTCC 57.907 37.500 0.00 0.00 0.00 3.13
5468 5687 5.836898 ACGGTTATCCTTTTTCCTTTTTCCT 59.163 36.000 0.00 0.00 0.00 3.36
5469 5688 6.325545 ACGGTTATCCTTTTTCCTTTTTCCTT 59.674 34.615 0.00 0.00 0.00 3.36
5470 5689 7.147620 ACGGTTATCCTTTTTCCTTTTTCCTTT 60.148 33.333 0.00 0.00 0.00 3.11
5471 5690 7.384115 CGGTTATCCTTTTTCCTTTTTCCTTTC 59.616 37.037 0.00 0.00 0.00 2.62
5472 5691 8.429641 GGTTATCCTTTTTCCTTTTTCCTTTCT 58.570 33.333 0.00 0.00 0.00 2.52
5477 5696 9.434275 TCCTTTTTCCTTTTTCCTTTCTAATCT 57.566 29.630 0.00 0.00 0.00 2.40
5488 5707 9.853177 TTTTCCTTTCTAATCTAATCATCTCCC 57.147 33.333 0.00 0.00 0.00 4.30
5489 5708 7.560796 TCCTTTCTAATCTAATCATCTCCCC 57.439 40.000 0.00 0.00 0.00 4.81
5490 5709 6.502158 TCCTTTCTAATCTAATCATCTCCCCC 59.498 42.308 0.00 0.00 0.00 5.40
5510 5729 3.971468 CCTGATTTTAAGGGGATGGGA 57.029 47.619 0.00 0.00 0.00 4.37
5511 5730 3.566351 CCTGATTTTAAGGGGATGGGAC 58.434 50.000 0.00 0.00 0.00 4.46
5512 5731 3.566351 CTGATTTTAAGGGGATGGGACC 58.434 50.000 0.00 0.00 0.00 4.46
5513 5732 2.092103 TGATTTTAAGGGGATGGGACCG 60.092 50.000 0.00 0.00 0.00 4.79
5514 5733 0.626916 TTTTAAGGGGATGGGACCGG 59.373 55.000 0.00 0.00 0.00 5.28
5515 5734 1.283381 TTTAAGGGGATGGGACCGGG 61.283 60.000 6.32 0.00 0.00 5.73
5516 5735 2.495705 TTAAGGGGATGGGACCGGGT 62.496 60.000 6.32 0.00 0.00 5.28
5517 5736 2.902069 TAAGGGGATGGGACCGGGTC 62.902 65.000 19.06 19.06 0.00 4.46
5518 5737 4.817909 GGGGATGGGACCGGGTCT 62.818 72.222 25.39 7.14 32.47 3.85
5519 5738 2.691252 GGGATGGGACCGGGTCTT 60.691 66.667 25.39 11.68 32.47 3.01
5520 5739 1.383525 GGGATGGGACCGGGTCTTA 60.384 63.158 25.39 15.34 32.47 2.10
5521 5740 0.767060 GGGATGGGACCGGGTCTTAT 60.767 60.000 25.39 18.98 32.47 1.73
5522 5741 1.137697 GGATGGGACCGGGTCTTATT 58.862 55.000 25.39 9.28 32.47 1.40
5523 5742 1.493446 GGATGGGACCGGGTCTTATTT 59.507 52.381 25.39 7.60 32.47 1.40
5524 5743 2.486727 GGATGGGACCGGGTCTTATTTC 60.487 54.545 25.39 14.82 32.47 2.17
5525 5744 0.538118 TGGGACCGGGTCTTATTTCG 59.462 55.000 25.39 0.00 32.47 3.46
5526 5745 0.538584 GGGACCGGGTCTTATTTCGT 59.461 55.000 25.39 0.00 32.47 3.85
5527 5746 1.065926 GGGACCGGGTCTTATTTCGTT 60.066 52.381 25.39 0.00 32.47 3.85
5528 5747 2.274437 GGACCGGGTCTTATTTCGTTC 58.726 52.381 25.39 2.25 32.47 3.95
5529 5748 2.093816 GGACCGGGTCTTATTTCGTTCT 60.094 50.000 25.39 0.00 32.47 3.01
5530 5749 3.131046 GGACCGGGTCTTATTTCGTTCTA 59.869 47.826 25.39 0.00 32.47 2.10
5531 5750 4.381932 GGACCGGGTCTTATTTCGTTCTAA 60.382 45.833 25.39 0.00 32.47 2.10
5532 5751 5.349061 ACCGGGTCTTATTTCGTTCTAAT 57.651 39.130 6.32 0.00 0.00 1.73
5533 5752 5.354767 ACCGGGTCTTATTTCGTTCTAATC 58.645 41.667 6.32 0.00 0.00 1.75
5534 5753 5.105228 ACCGGGTCTTATTTCGTTCTAATCA 60.105 40.000 6.32 0.00 0.00 2.57
5535 5754 5.813672 CCGGGTCTTATTTCGTTCTAATCAA 59.186 40.000 0.00 0.00 0.00 2.57
5536 5755 6.314400 CCGGGTCTTATTTCGTTCTAATCAAA 59.686 38.462 0.00 0.00 0.00 2.69
5537 5756 7.012044 CCGGGTCTTATTTCGTTCTAATCAAAT 59.988 37.037 0.00 0.00 0.00 2.32
5538 5757 8.062448 CGGGTCTTATTTCGTTCTAATCAAATC 58.938 37.037 0.00 0.00 0.00 2.17
5539 5758 8.889717 GGGTCTTATTTCGTTCTAATCAAATCA 58.110 33.333 0.00 0.00 0.00 2.57
5542 5761 9.935682 TCTTATTTCGTTCTAATCAAATCATGC 57.064 29.630 0.00 0.00 0.00 4.06
5543 5762 9.173939 CTTATTTCGTTCTAATCAAATCATGCC 57.826 33.333 0.00 0.00 0.00 4.40
5544 5763 6.507958 TTTCGTTCTAATCAAATCATGCCA 57.492 33.333 0.00 0.00 0.00 4.92
5545 5764 5.484173 TCGTTCTAATCAAATCATGCCAC 57.516 39.130 0.00 0.00 0.00 5.01
5546 5765 4.033932 TCGTTCTAATCAAATCATGCCACG 59.966 41.667 0.00 0.00 0.00 4.94
5547 5766 4.201812 CGTTCTAATCAAATCATGCCACGT 60.202 41.667 0.00 0.00 0.00 4.49
5548 5767 5.006261 CGTTCTAATCAAATCATGCCACGTA 59.994 40.000 0.00 0.00 0.00 3.57
5549 5768 6.292865 CGTTCTAATCAAATCATGCCACGTAT 60.293 38.462 0.00 0.00 0.00 3.06
5550 5769 6.544038 TCTAATCAAATCATGCCACGTATG 57.456 37.500 0.00 0.00 0.00 2.39
5551 5770 3.631145 ATCAAATCATGCCACGTATGC 57.369 42.857 2.46 2.46 0.00 3.14
5552 5771 1.330213 TCAAATCATGCCACGTATGCG 59.670 47.619 0.19 0.19 44.93 4.73
5553 5772 0.662619 AAATCATGCCACGTATGCGG 59.337 50.000 8.39 0.00 43.45 5.69
5554 5773 1.165907 AATCATGCCACGTATGCGGG 61.166 55.000 8.39 2.48 43.45 6.13
5555 5774 2.038814 ATCATGCCACGTATGCGGGA 62.039 55.000 7.15 5.28 45.97 5.14
5556 5775 2.108976 ATGCCACGTATGCGGGAG 59.891 61.111 7.15 0.00 45.97 4.30
5568 5787 3.770040 CGGGAGCACGGATGGACA 61.770 66.667 0.00 0.00 0.00 4.02
5569 5788 2.125106 GGGAGCACGGATGGACAC 60.125 66.667 0.00 0.00 0.00 3.67
5570 5789 2.662596 GGAGCACGGATGGACACA 59.337 61.111 0.00 0.00 0.00 3.72
5571 5790 1.741770 GGAGCACGGATGGACACAC 60.742 63.158 0.00 0.00 0.00 3.82
5572 5791 1.005037 GAGCACGGATGGACACACA 60.005 57.895 0.00 0.00 0.00 3.72
5573 5792 1.291877 GAGCACGGATGGACACACAC 61.292 60.000 0.00 0.00 0.00 3.82
5574 5793 2.667318 GCACGGATGGACACACACG 61.667 63.158 0.00 0.00 35.82 4.49
5575 5794 2.357034 ACGGATGGACACACACGC 60.357 61.111 0.00 0.00 33.83 5.34
5576 5795 3.478394 CGGATGGACACACACGCG 61.478 66.667 3.53 3.53 0.00 6.01
5577 5796 3.118454 GGATGGACACACACGCGG 61.118 66.667 12.47 1.27 0.00 6.46
5578 5797 3.118454 GATGGACACACACGCGGG 61.118 66.667 6.92 6.92 0.00 6.13
5579 5798 4.697756 ATGGACACACACGCGGGG 62.698 66.667 15.46 5.78 0.00 5.73
5581 5800 4.612412 GGACACACACGCGGGGAA 62.612 66.667 15.46 0.00 0.00 3.97
5582 5801 3.343421 GACACACACGCGGGGAAC 61.343 66.667 15.46 0.00 0.00 3.62
5583 5802 4.164087 ACACACACGCGGGGAACA 62.164 61.111 15.46 0.00 0.00 3.18
5584 5803 3.345808 CACACACGCGGGGAACAG 61.346 66.667 15.46 0.00 0.00 3.16
5585 5804 4.619227 ACACACGCGGGGAACAGG 62.619 66.667 15.46 0.00 0.00 4.00
5591 5810 3.056328 GCGGGGAACAGGCAAGTC 61.056 66.667 0.00 0.00 0.00 3.01
5592 5811 2.750350 CGGGGAACAGGCAAGTCT 59.250 61.111 0.00 0.00 0.00 3.24
5593 5812 1.376037 CGGGGAACAGGCAAGTCTC 60.376 63.158 0.00 0.00 0.00 3.36
5594 5813 1.376037 GGGGAACAGGCAAGTCTCG 60.376 63.158 0.00 0.00 0.00 4.04
5595 5814 1.371558 GGGAACAGGCAAGTCTCGT 59.628 57.895 0.00 0.00 0.00 4.18
5596 5815 0.670854 GGGAACAGGCAAGTCTCGTC 60.671 60.000 0.00 0.00 0.00 4.20
5597 5816 0.670854 GGAACAGGCAAGTCTCGTCC 60.671 60.000 0.00 0.00 0.00 4.79
5598 5817 1.006102 AACAGGCAAGTCTCGTCCG 60.006 57.895 0.00 0.00 0.00 4.79
5599 5818 1.745320 AACAGGCAAGTCTCGTCCGT 61.745 55.000 0.00 0.00 0.00 4.69
5600 5819 1.006102 CAGGCAAGTCTCGTCCGTT 60.006 57.895 0.00 0.00 0.00 4.44
5601 5820 0.600255 CAGGCAAGTCTCGTCCGTTT 60.600 55.000 0.00 0.00 0.00 3.60
5602 5821 0.106149 AGGCAAGTCTCGTCCGTTTT 59.894 50.000 0.00 0.00 0.00 2.43
5603 5822 0.942252 GGCAAGTCTCGTCCGTTTTT 59.058 50.000 0.00 0.00 0.00 1.94
5604 5823 1.333791 GGCAAGTCTCGTCCGTTTTTG 60.334 52.381 0.00 0.00 0.00 2.44
5625 5844 1.880027 GGAGCAAGTACAACAACCTGG 59.120 52.381 0.00 0.00 0.00 4.45
5747 5977 4.722193 GCTATATGCCGTGCCCAT 57.278 55.556 0.00 0.00 35.15 4.00
5778 6008 0.848305 CAAAAGCTTCAGTGCGTTGC 59.152 50.000 0.00 0.00 35.08 4.17
5779 6009 0.455410 AAAAGCTTCAGTGCGTTGCA 59.545 45.000 0.00 0.00 35.08 4.08
5780 6010 0.670162 AAAGCTTCAGTGCGTTGCAT 59.330 45.000 0.00 0.00 41.91 3.96
5781 6011 0.670162 AAGCTTCAGTGCGTTGCATT 59.330 45.000 0.00 0.00 41.91 3.56
5782 6012 0.039798 AGCTTCAGTGCGTTGCATTG 60.040 50.000 7.84 7.84 45.46 2.82
5783 6013 1.611592 GCTTCAGTGCGTTGCATTGC 61.612 55.000 9.14 0.46 44.12 3.56
5784 6014 0.318022 CTTCAGTGCGTTGCATTGCA 60.318 50.000 7.38 7.38 44.12 4.08
5785 6015 0.318022 TTCAGTGCGTTGCATTGCAG 60.318 50.000 11.76 2.40 44.12 4.41
5786 6016 1.008194 CAGTGCGTTGCATTGCAGT 60.008 52.632 11.76 13.33 45.24 4.40
5787 6017 0.595567 CAGTGCGTTGCATTGCAGTT 60.596 50.000 15.98 5.36 42.61 3.16
5788 6018 0.102844 AGTGCGTTGCATTGCAGTTT 59.897 45.000 11.76 1.05 41.82 2.66
5789 6019 1.336440 AGTGCGTTGCATTGCAGTTTA 59.664 42.857 11.76 0.00 41.82 2.01
5790 6020 2.030007 AGTGCGTTGCATTGCAGTTTAT 60.030 40.909 11.76 0.00 41.82 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.183360 CGATGAGGAATTCTAAGACAACCCTA 60.183 42.308 5.23 0.00 0.00 3.53
1 2 5.395768 CGATGAGGAATTCTAAGACAACCCT 60.396 44.000 5.23 0.00 0.00 4.34
2 3 4.811557 CGATGAGGAATTCTAAGACAACCC 59.188 45.833 5.23 0.00 0.00 4.11
3 4 4.811557 CCGATGAGGAATTCTAAGACAACC 59.188 45.833 5.23 0.00 45.00 3.77
25 26 7.645340 CCAGACGATGTTTTCATTGATTTATCC 59.355 37.037 0.00 0.00 42.66 2.59
32 33 4.819088 TGAACCAGACGATGTTTTCATTGA 59.181 37.500 0.00 0.00 42.66 2.57
41 42 2.800544 CGACTTTTGAACCAGACGATGT 59.199 45.455 0.00 0.00 31.05 3.06
42 43 3.057019 TCGACTTTTGAACCAGACGATG 58.943 45.455 0.00 0.00 33.33 3.84
44 45 2.875087 TCGACTTTTGAACCAGACGA 57.125 45.000 0.00 0.00 35.37 4.20
45 46 4.025229 TCAAATCGACTTTTGAACCAGACG 60.025 41.667 10.92 0.00 41.39 4.18
46 47 5.418310 TCAAATCGACTTTTGAACCAGAC 57.582 39.130 10.92 0.00 41.39 3.51
47 48 5.562696 GCATCAAATCGACTTTTGAACCAGA 60.563 40.000 15.93 0.00 45.77 3.86
48 49 4.618489 GCATCAAATCGACTTTTGAACCAG 59.382 41.667 15.93 9.13 45.77 4.00
49 50 4.278170 AGCATCAAATCGACTTTTGAACCA 59.722 37.500 15.93 0.00 45.77 3.67
50 51 4.798574 AGCATCAAATCGACTTTTGAACC 58.201 39.130 15.93 10.74 45.77 3.62
52 53 6.426633 TCACTAGCATCAAATCGACTTTTGAA 59.573 34.615 15.93 2.03 45.77 2.69
53 54 5.931724 TCACTAGCATCAAATCGACTTTTGA 59.068 36.000 14.69 14.69 46.46 2.69
54 55 6.169419 TCACTAGCATCAAATCGACTTTTG 57.831 37.500 5.33 5.33 37.83 2.44
55 56 6.650807 TCTTCACTAGCATCAAATCGACTTTT 59.349 34.615 0.00 0.00 0.00 2.27
74 76 7.913423 TCAAATGATCTCATCGATTTCTTCAC 58.087 34.615 0.00 0.00 35.10 3.18
77 79 7.767659 TCACTCAAATGATCTCATCGATTTCTT 59.232 33.333 0.00 0.00 35.10 2.52
82 84 8.343366 CAATTTCACTCAAATGATCTCATCGAT 58.657 33.333 0.00 0.00 34.69 3.59
86 88 8.630917 GGATCAATTTCACTCAAATGATCTCAT 58.369 33.333 11.87 0.00 38.09 2.90
93 95 5.796935 GTGACGGATCAATTTCACTCAAATG 59.203 40.000 0.00 0.00 36.31 2.32
94 96 5.106157 GGTGACGGATCAATTTCACTCAAAT 60.106 40.000 12.31 0.00 38.73 2.32
98 100 2.678336 GGGTGACGGATCAATTTCACTC 59.322 50.000 12.31 7.09 38.73 3.51
107 109 3.703804 ACCTAAGGGTGACGGATCA 57.296 52.632 0.00 0.00 45.43 2.92
124 126 3.941483 CACCATCAATCCTTAGTGTCCAC 59.059 47.826 0.00 0.00 0.00 4.02
132 134 7.405292 AGATCAACTTTCACCATCAATCCTTA 58.595 34.615 0.00 0.00 0.00 2.69
133 135 6.251471 AGATCAACTTTCACCATCAATCCTT 58.749 36.000 0.00 0.00 0.00 3.36
134 136 5.824421 AGATCAACTTTCACCATCAATCCT 58.176 37.500 0.00 0.00 0.00 3.24
174 176 6.497259 TGCCTACTTATCCTTCCTTCGATATT 59.503 38.462 0.00 0.00 0.00 1.28
184 186 5.488341 TCTTGTGTTGCCTACTTATCCTTC 58.512 41.667 0.00 0.00 0.00 3.46
193 195 2.287608 GCAAGGTTCTTGTGTTGCCTAC 60.288 50.000 9.07 0.00 39.52 3.18
194 196 1.953686 GCAAGGTTCTTGTGTTGCCTA 59.046 47.619 9.07 0.00 39.52 3.93
196 198 0.594796 CGCAAGGTTCTTGTGTTGCC 60.595 55.000 11.68 0.00 41.87 4.52
201 203 2.842208 TGTTTCGCAAGGTTCTTGTG 57.158 45.000 13.21 13.21 38.47 3.33
228 230 3.055458 TGTGTCTTGAACTCACAACTCCA 60.055 43.478 0.00 0.00 38.80 3.86
253 255 1.428869 GGATCTAGACCTGGGCACAT 58.571 55.000 0.47 0.00 0.00 3.21
260 262 3.305676 CCTGTATTGCGGATCTAGACCTG 60.306 52.174 0.00 0.00 0.00 4.00
266 268 2.673258 TCCACCTGTATTGCGGATCTA 58.327 47.619 0.00 0.00 0.00 1.98
268 270 2.325583 TTCCACCTGTATTGCGGATC 57.674 50.000 0.00 0.00 0.00 3.36
273 275 2.716217 AGAGCTTTCCACCTGTATTGC 58.284 47.619 0.00 0.00 0.00 3.56
281 283 2.911484 CATGAGGTAGAGCTTTCCACC 58.089 52.381 0.00 0.00 0.00 4.61
285 287 2.998316 AGGCATGAGGTAGAGCTTTC 57.002 50.000 0.00 0.00 0.00 2.62
293 295 8.783093 CGAATAAAATTCATAAGGCATGAGGTA 58.217 33.333 0.00 0.00 44.47 3.08
294 296 7.651808 CGAATAAAATTCATAAGGCATGAGGT 58.348 34.615 0.00 0.00 44.47 3.85
311 313 5.013568 TGTATTCCCTCGAGCGAATAAAA 57.986 39.130 26.32 17.92 33.82 1.52
320 322 5.207110 ACTCATCATTGTATTCCCTCGAG 57.793 43.478 5.13 5.13 0.00 4.04
337 339 6.572509 GCACCGTCACCATAGAATATACTCAT 60.573 42.308 0.00 0.00 0.00 2.90
357 359 1.938577 CATTGATCTTGAGGAGCACCG 59.061 52.381 0.00 0.00 40.29 4.94
374 376 4.433615 GAGACACATATGACCGTCACATT 58.566 43.478 10.38 0.00 0.00 2.71
398 400 4.284485 GACAACAAAAACCATACCGTGTC 58.716 43.478 0.00 0.00 0.00 3.67
413 415 2.811431 CCATTAGAAGCCACGACAACAA 59.189 45.455 0.00 0.00 0.00 2.83
414 416 2.037902 TCCATTAGAAGCCACGACAACA 59.962 45.455 0.00 0.00 0.00 3.33
415 417 2.695359 TCCATTAGAAGCCACGACAAC 58.305 47.619 0.00 0.00 0.00 3.32
418 420 4.438744 CCAAAATCCATTAGAAGCCACGAC 60.439 45.833 0.00 0.00 0.00 4.34
419 421 3.694072 CCAAAATCCATTAGAAGCCACGA 59.306 43.478 0.00 0.00 0.00 4.35
420 422 3.443681 ACCAAAATCCATTAGAAGCCACG 59.556 43.478 0.00 0.00 0.00 4.94
421 423 5.047377 TCAACCAAAATCCATTAGAAGCCAC 60.047 40.000 0.00 0.00 0.00 5.01
430 432 8.542080 ACAACATATGATCAACCAAAATCCATT 58.458 29.630 10.38 0.00 0.00 3.16
475 484 6.095860 AGGTTCCAAATATGATGTGTGATGTG 59.904 38.462 0.00 0.00 0.00 3.21
504 513 3.146847 GAGAAAGAAACGGTGTTGGGAT 58.853 45.455 0.00 0.00 0.00 3.85
508 517 6.073276 TGTGATATGAGAAAGAAACGGTGTTG 60.073 38.462 0.00 0.00 0.00 3.33
541 550 7.967854 CCGAGTTATGCTCAATTCACATAAAAA 59.032 33.333 6.09 0.00 44.33 1.94
543 552 6.821160 TCCGAGTTATGCTCAATTCACATAAA 59.179 34.615 6.09 0.00 44.33 1.40
545 554 5.912892 TCCGAGTTATGCTCAATTCACATA 58.087 37.500 0.00 0.00 44.33 2.29
546 555 4.769688 TCCGAGTTATGCTCAATTCACAT 58.230 39.130 0.00 0.00 44.33 3.21
561 571 7.038302 TCCATAAGAAATATAGCCATCCGAGTT 60.038 37.037 0.00 0.00 0.00 3.01
562 572 6.440647 TCCATAAGAAATATAGCCATCCGAGT 59.559 38.462 0.00 0.00 0.00 4.18
575 585 8.945057 GCTTGGCAAATTTTTCCATAAGAAATA 58.055 29.630 0.00 0.00 43.93 1.40
598 608 3.149981 GTTTAGGACTTGAGCCTTGCTT 58.850 45.455 0.00 0.00 39.88 3.91
600 610 2.784347 AGTTTAGGACTTGAGCCTTGC 58.216 47.619 0.00 0.00 33.92 4.01
628 638 5.712152 AATCGAGGAAAATGCTTTCACTT 57.288 34.783 0.00 0.00 42.44 3.16
677 697 5.663456 AGAAACACGGTACAGACTTAAACA 58.337 37.500 0.00 0.00 0.00 2.83
691 711 6.313744 AGACATTTTTCCTTAGAAACACGG 57.686 37.500 0.00 0.00 41.69 4.94
714 735 6.998802 ACCGGATTTGAAATTTTGGACAATA 58.001 32.000 9.46 0.00 0.00 1.90
759 780 0.729140 CTTCCGTCGGTTGCATTTGC 60.729 55.000 11.88 0.00 42.50 3.68
828 849 5.887288 CGTTATTATTGCGTACGTGTTCTTC 59.113 40.000 17.90 0.00 0.00 2.87
1158 1195 0.633921 TCCTCCTCCTCTTCCTCCTG 59.366 60.000 0.00 0.00 0.00 3.86
1281 1321 0.896940 AAACCCTAGCGACGAGTGGA 60.897 55.000 0.00 0.00 0.00 4.02
1288 1328 8.652810 TTACAATCTAATTAAACCCTAGCGAC 57.347 34.615 0.00 0.00 0.00 5.19
1380 1420 1.740296 GCCTCGCCTTTACTCGCAA 60.740 57.895 0.00 0.00 0.00 4.85
1483 1523 5.613329 ACAACAATCCACTGCAAATGATTT 58.387 33.333 0.00 0.00 0.00 2.17
1958 2017 0.456221 TTCTCATCCCTCGACTTCGC 59.544 55.000 0.00 0.00 39.60 4.70
2072 2131 4.482386 CCAGCAGTCATTTCAATTGTCTG 58.518 43.478 5.13 7.11 0.00 3.51
2338 2397 6.782494 ACCCTCACCTGAAATATTTCAAACTT 59.218 34.615 26.57 11.82 45.61 2.66
2347 2406 8.525729 AAAGGATATACCCTCACCTGAAATAT 57.474 34.615 0.00 0.00 40.05 1.28
2585 2644 4.847990 AACCCGACCACTAATTATGGAA 57.152 40.909 16.26 0.00 39.87 3.53
2777 2836 4.463539 TCCAAAACATGCATAATCACAGCT 59.536 37.500 0.00 0.00 0.00 4.24
2828 2889 8.331730 ACACTGTACCCAAATAAATTAGTGAC 57.668 34.615 0.00 0.00 37.16 3.67
2998 3068 6.091718 TCATATACGTACCTGCAAGCATTA 57.908 37.500 0.00 0.00 0.00 1.90
3128 3198 7.080353 TGAACAGATCAGCAAATGTCAATAG 57.920 36.000 0.00 0.00 33.04 1.73
3308 3378 5.221126 GCCTATCCAGATTTTTCATGTGACC 60.221 44.000 0.00 0.00 0.00 4.02
4075 4146 6.887626 TCATAAAAGGTAAACTGGTTGGTC 57.112 37.500 0.00 0.00 0.00 4.02
4183 4379 6.605471 ACACAGATCCAAACACTACTGATA 57.395 37.500 0.00 0.00 0.00 2.15
4206 4402 6.800543 TGTAAGTACCGTACACAACTAACAA 58.199 36.000 11.26 0.00 0.00 2.83
4288 4486 5.077134 AGAATAGAATTGCTGCCAAAACC 57.923 39.130 0.00 0.00 34.05 3.27
4297 4495 9.128404 TCTGCAATGAATTAGAATAGAATTGCT 57.872 29.630 19.49 0.00 41.44 3.91
4477 4677 2.192664 TAAATGGCCGCAGTTCTTCA 57.807 45.000 0.00 0.00 0.00 3.02
4561 4761 1.145738 ACAACTTCAAGAGGGGCATGT 59.854 47.619 0.00 0.00 0.00 3.21
4599 4799 1.680249 GCAGTGATTCCAGGAAGACCC 60.680 57.143 8.20 0.00 36.73 4.46
4653 4853 2.351418 TCATCGTGTTGATCATTTCCGC 59.649 45.455 0.00 0.00 34.13 5.54
4832 5033 6.864342 ACCGGATCAGCTATACATGTATAAC 58.136 40.000 22.67 19.07 0.00 1.89
4855 5056 5.117592 GGCATGCAAATATTCAGCGATTTAC 59.882 40.000 21.36 0.00 0.00 2.01
4979 5180 2.607771 CCAAAGTATTTTGCAGTGCGCT 60.608 45.455 9.73 0.00 41.87 5.92
5157 5363 3.865745 GTGAAGTTGCATAGTACTCGCAT 59.134 43.478 17.81 6.21 35.19 4.73
5158 5364 3.056821 AGTGAAGTTGCATAGTACTCGCA 60.057 43.478 14.23 14.23 0.00 5.10
5222 5432 1.236616 TGACAAGCATGCGTTCCCAG 61.237 55.000 13.01 0.00 0.00 4.45
5241 5451 8.650143 TTTAGAGCCAAAATAGTTCAATTCCT 57.350 30.769 0.00 0.00 0.00 3.36
5242 5452 9.875691 AATTTAGAGCCAAAATAGTTCAATTCC 57.124 29.630 0.00 0.00 0.00 3.01
5247 5457 9.528489 ACCTAAATTTAGAGCCAAAATAGTTCA 57.472 29.630 23.95 0.00 32.47 3.18
5264 5474 4.690280 CCGCATGCTTGAAAACCTAAATTT 59.310 37.500 17.13 0.00 0.00 1.82
5296 5514 5.535406 GGAAAGAATCTGAATGGATCTGCAT 59.465 40.000 0.00 0.00 0.00 3.96
5302 5520 5.444176 GTCTGGGAAAGAATCTGAATGGAT 58.556 41.667 0.00 0.00 36.40 3.41
5304 5522 3.624861 CGTCTGGGAAAGAATCTGAATGG 59.375 47.826 0.00 0.00 36.40 3.16
5317 5535 4.020617 CAGGCCTGCGTCTGGGAA 62.021 66.667 22.33 0.00 0.00 3.97
5322 5540 1.302033 CTTGTTCAGGCCTGCGTCT 60.302 57.895 28.91 0.00 0.00 4.18
5329 5547 1.600916 ACGCTTCCTTGTTCAGGCC 60.601 57.895 0.00 0.00 43.55 5.19
5346 5564 2.422479 GGTATCCTTTTCGCCTTTCCAC 59.578 50.000 0.00 0.00 0.00 4.02
5356 5574 2.415512 GCACTCGTGTGGTATCCTTTTC 59.584 50.000 18.41 0.00 43.97 2.29
5366 5584 2.184448 CAAAAACAAGCACTCGTGTGG 58.816 47.619 18.41 5.43 43.97 4.17
5369 5588 1.535860 CCCCAAAAACAAGCACTCGTG 60.536 52.381 0.00 0.00 0.00 4.35
5388 5607 4.496336 AGCAGGCAAGCCGGATCC 62.496 66.667 15.46 0.00 41.95 3.36
5389 5608 2.899339 GAGCAGGCAAGCCGGATC 60.899 66.667 15.46 14.32 39.23 3.36
5390 5609 4.496336 GGAGCAGGCAAGCCGGAT 62.496 66.667 15.46 8.74 41.95 4.18
5394 5613 4.811364 GGAGGGAGCAGGCAAGCC 62.811 72.222 2.02 2.02 34.23 4.35
5395 5614 4.811364 GGGAGGGAGCAGGCAAGC 62.811 72.222 0.00 0.00 0.00 4.01
5396 5615 4.120755 GGGGAGGGAGCAGGCAAG 62.121 72.222 0.00 0.00 0.00 4.01
5397 5616 2.856208 TATGGGGAGGGAGCAGGCAA 62.856 60.000 0.00 0.00 0.00 4.52
5398 5617 3.346035 TATGGGGAGGGAGCAGGCA 62.346 63.158 0.00 0.00 0.00 4.75
5399 5618 2.448542 TATGGGGAGGGAGCAGGC 60.449 66.667 0.00 0.00 0.00 4.85
5400 5619 1.074167 AGTATGGGGAGGGAGCAGG 60.074 63.158 0.00 0.00 0.00 4.85
5401 5620 1.124477 GGAGTATGGGGAGGGAGCAG 61.124 65.000 0.00 0.00 0.00 4.24
5402 5621 1.074471 GGAGTATGGGGAGGGAGCA 60.074 63.158 0.00 0.00 0.00 4.26
5403 5622 1.843832 GGGAGTATGGGGAGGGAGC 60.844 68.421 0.00 0.00 0.00 4.70
5404 5623 0.194587 ATGGGAGTATGGGGAGGGAG 59.805 60.000 0.00 0.00 0.00 4.30
5405 5624 0.193574 GATGGGAGTATGGGGAGGGA 59.806 60.000 0.00 0.00 0.00 4.20
5406 5625 0.842467 GGATGGGAGTATGGGGAGGG 60.842 65.000 0.00 0.00 0.00 4.30
5407 5626 1.194781 CGGATGGGAGTATGGGGAGG 61.195 65.000 0.00 0.00 0.00 4.30
5408 5627 0.471971 ACGGATGGGAGTATGGGGAG 60.472 60.000 0.00 0.00 0.00 4.30
5409 5628 0.861854 TACGGATGGGAGTATGGGGA 59.138 55.000 0.00 0.00 0.00 4.81
5410 5629 0.974383 GTACGGATGGGAGTATGGGG 59.026 60.000 0.00 0.00 0.00 4.96
5411 5630 1.893801 GAGTACGGATGGGAGTATGGG 59.106 57.143 0.00 0.00 0.00 4.00
5412 5631 2.820787 GAGAGTACGGATGGGAGTATGG 59.179 54.545 0.00 0.00 0.00 2.74
5413 5632 3.253677 GTGAGAGTACGGATGGGAGTATG 59.746 52.174 0.00 0.00 0.00 2.39
5414 5633 3.138653 AGTGAGAGTACGGATGGGAGTAT 59.861 47.826 0.00 0.00 0.00 2.12
5415 5634 2.508716 AGTGAGAGTACGGATGGGAGTA 59.491 50.000 0.00 0.00 0.00 2.59
5416 5635 1.285373 AGTGAGAGTACGGATGGGAGT 59.715 52.381 0.00 0.00 0.00 3.85
5417 5636 2.060050 AGTGAGAGTACGGATGGGAG 57.940 55.000 0.00 0.00 0.00 4.30
5418 5637 2.291346 TGAAGTGAGAGTACGGATGGGA 60.291 50.000 0.00 0.00 0.00 4.37
5419 5638 2.100197 TGAAGTGAGAGTACGGATGGG 58.900 52.381 0.00 0.00 0.00 4.00
5420 5639 3.243569 GGATGAAGTGAGAGTACGGATGG 60.244 52.174 0.00 0.00 0.00 3.51
5421 5640 3.634448 AGGATGAAGTGAGAGTACGGATG 59.366 47.826 0.00 0.00 0.00 3.51
5422 5641 3.904717 AGGATGAAGTGAGAGTACGGAT 58.095 45.455 0.00 0.00 0.00 4.18
5423 5642 3.367646 AGGATGAAGTGAGAGTACGGA 57.632 47.619 0.00 0.00 0.00 4.69
5424 5643 3.002451 CGTAGGATGAAGTGAGAGTACGG 59.998 52.174 0.00 0.00 0.00 4.02
5425 5644 4.198473 CGTAGGATGAAGTGAGAGTACG 57.802 50.000 0.00 0.00 0.00 3.67
5442 5661 7.176165 AGGAAAAAGGAAAAAGGATAACCGTAG 59.824 37.037 0.00 0.00 41.83 3.51
5443 5662 7.005902 AGGAAAAAGGAAAAAGGATAACCGTA 58.994 34.615 0.00 0.00 41.83 4.02
5444 5663 5.836898 AGGAAAAAGGAAAAAGGATAACCGT 59.163 36.000 0.00 0.00 41.83 4.83
5445 5664 6.340962 AGGAAAAAGGAAAAAGGATAACCG 57.659 37.500 0.00 0.00 41.83 4.44
5446 5665 8.429641 AGAAAGGAAAAAGGAAAAAGGATAACC 58.570 33.333 0.00 0.00 0.00 2.85
5451 5670 9.434275 AGATTAGAAAGGAAAAAGGAAAAAGGA 57.566 29.630 0.00 0.00 0.00 3.36
5462 5681 9.853177 GGGAGATGATTAGATTAGAAAGGAAAA 57.147 33.333 0.00 0.00 0.00 2.29
5463 5682 8.440771 GGGGAGATGATTAGATTAGAAAGGAAA 58.559 37.037 0.00 0.00 0.00 3.13
5464 5683 7.017651 GGGGGAGATGATTAGATTAGAAAGGAA 59.982 40.741 0.00 0.00 0.00 3.36
5465 5684 6.502158 GGGGGAGATGATTAGATTAGAAAGGA 59.498 42.308 0.00 0.00 0.00 3.36
5466 5685 6.716284 GGGGGAGATGATTAGATTAGAAAGG 58.284 44.000 0.00 0.00 0.00 3.11
5490 5709 3.566351 GTCCCATCCCCTTAAAATCAGG 58.434 50.000 0.00 0.00 0.00 3.86
5491 5710 3.566351 GGTCCCATCCCCTTAAAATCAG 58.434 50.000 0.00 0.00 0.00 2.90
5492 5711 2.092103 CGGTCCCATCCCCTTAAAATCA 60.092 50.000 0.00 0.00 0.00 2.57
5493 5712 2.583143 CGGTCCCATCCCCTTAAAATC 58.417 52.381 0.00 0.00 0.00 2.17
5494 5713 1.216930 CCGGTCCCATCCCCTTAAAAT 59.783 52.381 0.00 0.00 0.00 1.82
5495 5714 0.626916 CCGGTCCCATCCCCTTAAAA 59.373 55.000 0.00 0.00 0.00 1.52
5496 5715 1.283381 CCCGGTCCCATCCCCTTAAA 61.283 60.000 0.00 0.00 0.00 1.52
5497 5716 1.694882 CCCGGTCCCATCCCCTTAA 60.695 63.158 0.00 0.00 0.00 1.85
5498 5717 2.040254 CCCGGTCCCATCCCCTTA 60.040 66.667 0.00 0.00 0.00 2.69
5499 5718 4.364686 ACCCGGTCCCATCCCCTT 62.365 66.667 0.00 0.00 0.00 3.95
5500 5719 4.817909 GACCCGGTCCCATCCCCT 62.818 72.222 6.25 0.00 0.00 4.79
5501 5720 2.902069 TAAGACCCGGTCCCATCCCC 62.902 65.000 14.32 0.00 32.18 4.81
5502 5721 0.767060 ATAAGACCCGGTCCCATCCC 60.767 60.000 14.32 0.00 32.18 3.85
5503 5722 1.137697 AATAAGACCCGGTCCCATCC 58.862 55.000 14.32 0.00 32.18 3.51
5504 5723 2.805657 CGAAATAAGACCCGGTCCCATC 60.806 54.545 14.32 5.36 32.18 3.51
5505 5724 1.140252 CGAAATAAGACCCGGTCCCAT 59.860 52.381 14.32 4.88 32.18 4.00
5506 5725 0.538118 CGAAATAAGACCCGGTCCCA 59.462 55.000 14.32 2.49 32.18 4.37
5507 5726 0.538584 ACGAAATAAGACCCGGTCCC 59.461 55.000 14.32 0.00 32.18 4.46
5508 5727 2.093816 AGAACGAAATAAGACCCGGTCC 60.094 50.000 14.32 0.00 39.32 4.46
5509 5728 3.242549 AGAACGAAATAAGACCCGGTC 57.757 47.619 9.81 9.81 38.85 4.79
5510 5729 4.806640 TTAGAACGAAATAAGACCCGGT 57.193 40.909 0.00 0.00 0.00 5.28
5511 5730 5.353938 TGATTAGAACGAAATAAGACCCGG 58.646 41.667 0.00 0.00 0.00 5.73
5512 5731 6.897259 TTGATTAGAACGAAATAAGACCCG 57.103 37.500 0.00 0.00 0.00 5.28
5513 5732 8.889717 TGATTTGATTAGAACGAAATAAGACCC 58.110 33.333 0.00 0.00 0.00 4.46
5516 5735 9.935682 GCATGATTTGATTAGAACGAAATAAGA 57.064 29.630 0.00 0.00 0.00 2.10
5517 5736 9.173939 GGCATGATTTGATTAGAACGAAATAAG 57.826 33.333 0.00 0.00 0.00 1.73
5518 5737 8.681806 TGGCATGATTTGATTAGAACGAAATAA 58.318 29.630 0.00 0.00 0.00 1.40
5519 5738 8.128582 GTGGCATGATTTGATTAGAACGAAATA 58.871 33.333 0.00 0.00 0.00 1.40
5520 5739 6.974622 GTGGCATGATTTGATTAGAACGAAAT 59.025 34.615 0.00 0.00 0.00 2.17
5521 5740 6.321717 GTGGCATGATTTGATTAGAACGAAA 58.678 36.000 0.00 0.00 0.00 3.46
5522 5741 5.447144 CGTGGCATGATTTGATTAGAACGAA 60.447 40.000 0.00 0.00 0.00 3.85
5523 5742 4.033932 CGTGGCATGATTTGATTAGAACGA 59.966 41.667 0.00 0.00 0.00 3.85
5524 5743 4.201812 ACGTGGCATGATTTGATTAGAACG 60.202 41.667 14.82 0.00 0.00 3.95
5525 5744 5.235305 ACGTGGCATGATTTGATTAGAAC 57.765 39.130 14.82 0.00 0.00 3.01
5526 5745 6.513230 GCATACGTGGCATGATTTGATTAGAA 60.513 38.462 14.82 0.00 0.00 2.10
5527 5746 5.049474 GCATACGTGGCATGATTTGATTAGA 60.049 40.000 14.82 0.00 0.00 2.10
5528 5747 5.149273 GCATACGTGGCATGATTTGATTAG 58.851 41.667 14.82 0.00 0.00 1.73
5529 5748 4.319405 CGCATACGTGGCATGATTTGATTA 60.319 41.667 14.82 0.00 33.53 1.75
5530 5749 3.548616 CGCATACGTGGCATGATTTGATT 60.549 43.478 14.82 0.00 33.53 2.57
5531 5750 2.031769 CGCATACGTGGCATGATTTGAT 60.032 45.455 14.82 0.00 33.53 2.57
5532 5751 1.330213 CGCATACGTGGCATGATTTGA 59.670 47.619 14.82 0.00 33.53 2.69
5533 5752 1.597690 CCGCATACGTGGCATGATTTG 60.598 52.381 14.82 8.58 35.59 2.32
5534 5753 0.662619 CCGCATACGTGGCATGATTT 59.337 50.000 14.82 0.00 35.59 2.17
5535 5754 1.165907 CCCGCATACGTGGCATGATT 61.166 55.000 14.82 0.00 41.87 2.57
5536 5755 1.597854 CCCGCATACGTGGCATGAT 60.598 57.895 14.82 0.00 41.87 2.45
5537 5756 2.203001 CCCGCATACGTGGCATGA 60.203 61.111 14.82 0.00 41.87 3.07
5538 5757 2.203001 TCCCGCATACGTGGCATG 60.203 61.111 4.87 4.87 41.87 4.06
5539 5758 2.108976 CTCCCGCATACGTGGCAT 59.891 61.111 13.38 0.00 41.87 4.40
5540 5759 4.830765 GCTCCCGCATACGTGGCA 62.831 66.667 13.38 0.00 41.87 4.92
5541 5760 4.830765 TGCTCCCGCATACGTGGC 62.831 66.667 0.00 0.21 42.25 5.01
5551 5770 3.770040 TGTCCATCCGTGCTCCCG 61.770 66.667 0.00 0.00 0.00 5.14
5552 5771 2.125106 GTGTCCATCCGTGCTCCC 60.125 66.667 0.00 0.00 0.00 4.30
5553 5772 1.741770 GTGTGTCCATCCGTGCTCC 60.742 63.158 0.00 0.00 0.00 4.70
5554 5773 1.005037 TGTGTGTCCATCCGTGCTC 60.005 57.895 0.00 0.00 0.00 4.26
5555 5774 1.301716 GTGTGTGTCCATCCGTGCT 60.302 57.895 0.00 0.00 0.00 4.40
5556 5775 2.667318 CGTGTGTGTCCATCCGTGC 61.667 63.158 0.00 0.00 0.00 5.34
5557 5776 2.667318 GCGTGTGTGTCCATCCGTG 61.667 63.158 0.00 0.00 0.00 4.94
5558 5777 2.357034 GCGTGTGTGTCCATCCGT 60.357 61.111 0.00 0.00 0.00 4.69
5559 5778 3.478394 CGCGTGTGTGTCCATCCG 61.478 66.667 0.00 0.00 0.00 4.18
5560 5779 3.118454 CCGCGTGTGTGTCCATCC 61.118 66.667 4.92 0.00 0.00 3.51
5561 5780 3.118454 CCCGCGTGTGTGTCCATC 61.118 66.667 4.92 0.00 0.00 3.51
5562 5781 4.697756 CCCCGCGTGTGTGTCCAT 62.698 66.667 4.92 0.00 0.00 3.41
5564 5783 4.612412 TTCCCCGCGTGTGTGTCC 62.612 66.667 4.92 0.00 0.00 4.02
5565 5784 3.343421 GTTCCCCGCGTGTGTGTC 61.343 66.667 4.92 0.00 0.00 3.67
5566 5785 4.164087 TGTTCCCCGCGTGTGTGT 62.164 61.111 4.92 0.00 0.00 3.72
5567 5786 3.345808 CTGTTCCCCGCGTGTGTG 61.346 66.667 4.92 0.00 0.00 3.82
5568 5787 4.619227 CCTGTTCCCCGCGTGTGT 62.619 66.667 4.92 0.00 0.00 3.72
5574 5793 3.056328 GACTTGCCTGTTCCCCGC 61.056 66.667 0.00 0.00 0.00 6.13
5575 5794 1.376037 GAGACTTGCCTGTTCCCCG 60.376 63.158 0.00 0.00 0.00 5.73
5576 5795 1.376037 CGAGACTTGCCTGTTCCCC 60.376 63.158 0.00 0.00 0.00 4.81
5577 5796 0.670854 GACGAGACTTGCCTGTTCCC 60.671 60.000 0.00 0.00 0.00 3.97
5578 5797 0.670854 GGACGAGACTTGCCTGTTCC 60.671 60.000 0.00 0.00 0.00 3.62
5579 5798 1.009389 CGGACGAGACTTGCCTGTTC 61.009 60.000 0.00 0.00 0.00 3.18
5580 5799 1.006102 CGGACGAGACTTGCCTGTT 60.006 57.895 0.00 0.00 0.00 3.16
5581 5800 1.745320 AACGGACGAGACTTGCCTGT 61.745 55.000 0.00 0.00 0.00 4.00
5582 5801 0.600255 AAACGGACGAGACTTGCCTG 60.600 55.000 0.00 0.00 0.00 4.85
5583 5802 0.106149 AAAACGGACGAGACTTGCCT 59.894 50.000 0.00 0.00 0.00 4.75
5584 5803 0.942252 AAAAACGGACGAGACTTGCC 59.058 50.000 0.00 0.00 0.00 4.52
5585 5804 1.333791 CCAAAAACGGACGAGACTTGC 60.334 52.381 0.00 0.00 0.00 4.01
5586 5805 1.263217 CCCAAAAACGGACGAGACTTG 59.737 52.381 0.00 0.00 0.00 3.16
5587 5806 1.139455 TCCCAAAAACGGACGAGACTT 59.861 47.619 0.00 0.00 0.00 3.01
5588 5807 0.754472 TCCCAAAAACGGACGAGACT 59.246 50.000 0.00 0.00 0.00 3.24
5589 5808 1.145803 CTCCCAAAAACGGACGAGAC 58.854 55.000 0.00 0.00 0.00 3.36
5590 5809 0.601841 GCTCCCAAAAACGGACGAGA 60.602 55.000 0.00 0.00 0.00 4.04
5591 5810 0.882927 TGCTCCCAAAAACGGACGAG 60.883 55.000 0.00 0.00 0.00 4.18
5592 5811 0.464013 TTGCTCCCAAAAACGGACGA 60.464 50.000 0.00 0.00 0.00 4.20
5593 5812 0.040425 CTTGCTCCCAAAAACGGACG 60.040 55.000 0.00 0.00 0.00 4.79
5594 5813 1.029681 ACTTGCTCCCAAAAACGGAC 58.970 50.000 0.00 0.00 0.00 4.79
5595 5814 2.223745 GTACTTGCTCCCAAAAACGGA 58.776 47.619 0.00 0.00 0.00 4.69
5596 5815 1.950909 TGTACTTGCTCCCAAAAACGG 59.049 47.619 0.00 0.00 0.00 4.44
5597 5816 3.181495 TGTTGTACTTGCTCCCAAAAACG 60.181 43.478 0.00 0.00 0.00 3.60
5598 5817 4.379339 TGTTGTACTTGCTCCCAAAAAC 57.621 40.909 0.00 0.00 0.00 2.43
5599 5818 4.382147 GGTTGTTGTACTTGCTCCCAAAAA 60.382 41.667 0.00 0.00 0.00 1.94
5600 5819 3.131400 GGTTGTTGTACTTGCTCCCAAAA 59.869 43.478 0.00 0.00 0.00 2.44
5601 5820 2.691011 GGTTGTTGTACTTGCTCCCAAA 59.309 45.455 0.00 0.00 0.00 3.28
5602 5821 2.092103 AGGTTGTTGTACTTGCTCCCAA 60.092 45.455 0.00 0.00 0.00 4.12
5603 5822 1.493022 AGGTTGTTGTACTTGCTCCCA 59.507 47.619 0.00 0.00 0.00 4.37
5604 5823 1.880027 CAGGTTGTTGTACTTGCTCCC 59.120 52.381 0.00 0.00 0.00 4.30
5625 5844 1.026718 CCACCAGATCAGGAAACGGC 61.027 60.000 11.72 0.00 0.00 5.68
5694 5923 1.568504 TGTGACAGGGGATCAGGTAC 58.431 55.000 0.00 0.00 0.00 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.