Multiple sequence alignment - TraesCS5A01G300500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G300500 chr5A 100.000 2231 0 0 1 2231 509975590 509977820 0.000000e+00 4120
1 TraesCS5A01G300500 chr5D 89.114 1038 56 19 382 1410 404261918 404260929 0.000000e+00 1238
2 TraesCS5A01G300500 chr5D 90.986 588 38 7 1598 2179 404260396 404259818 0.000000e+00 778
3 TraesCS5A01G300500 chr5D 89.916 119 7 3 1410 1524 404260895 404260778 4.960000e-32 148
4 TraesCS5A01G300500 chr5B 86.076 553 30 15 426 954 485574229 485573700 3.240000e-153 551
5 TraesCS5A01G300500 chr5B 80.645 651 63 29 951 1564 485571869 485571245 1.570000e-121 446
6 TraesCS5A01G300500 chr5B 87.562 201 11 6 1918 2107 485570955 485570758 1.040000e-53 220


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G300500 chr5A 509975590 509977820 2230 False 4120.000000 4120 100.000000 1 2231 1 chr5A.!!$F1 2230
1 TraesCS5A01G300500 chr5D 404259818 404261918 2100 True 721.333333 1238 90.005333 382 2179 3 chr5D.!!$R1 1797
2 TraesCS5A01G300500 chr5B 485570758 485574229 3471 True 405.666667 551 84.761000 426 2107 3 chr5B.!!$R1 1681

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
211 212 0.034756 TTGTGTATGCTCACGTGCCT 59.965 50.0 11.67 0.0 40.74 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1274 3157 0.038709 TACAAAACCTTGCATGCGGC 60.039 50.0 14.09 0.0 45.13 6.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.718940 CCTTTTAGGCCAAAATCACGAT 57.281 40.909 5.01 0.00 35.59 3.73
23 24 5.828299 CCTTTTAGGCCAAAATCACGATA 57.172 39.130 5.01 0.00 35.59 2.92
24 25 6.391227 CCTTTTAGGCCAAAATCACGATAT 57.609 37.500 5.01 0.00 35.59 1.63
25 26 6.805713 CCTTTTAGGCCAAAATCACGATATT 58.194 36.000 5.01 0.00 35.59 1.28
26 27 6.697019 CCTTTTAGGCCAAAATCACGATATTG 59.303 38.462 5.01 0.00 35.59 1.90
27 28 7.397892 TTTTAGGCCAAAATCACGATATTGA 57.602 32.000 5.01 0.00 31.05 2.57
28 29 7.581213 TTTAGGCCAAAATCACGATATTGAT 57.419 32.000 5.01 0.00 37.87 2.57
29 30 5.443185 AGGCCAAAATCACGATATTGATG 57.557 39.130 5.01 0.00 36.31 3.07
30 31 5.132502 AGGCCAAAATCACGATATTGATGA 58.867 37.500 5.01 0.00 36.31 2.92
31 32 5.009010 AGGCCAAAATCACGATATTGATGAC 59.991 40.000 5.01 0.00 36.31 3.06
32 33 5.009010 GGCCAAAATCACGATATTGATGACT 59.991 40.000 0.00 0.00 36.31 3.41
33 34 6.204688 GGCCAAAATCACGATATTGATGACTA 59.795 38.462 0.00 0.00 36.31 2.59
34 35 7.094634 GGCCAAAATCACGATATTGATGACTAT 60.095 37.037 0.00 0.00 36.31 2.12
35 36 8.292448 GCCAAAATCACGATATTGATGACTATT 58.708 33.333 0.00 0.00 36.31 1.73
40 41 9.881649 AATCACGATATTGATGACTATTATGCT 57.118 29.630 0.00 0.00 36.31 3.79
41 42 8.693542 TCACGATATTGATGACTATTATGCTG 57.306 34.615 0.00 0.00 0.00 4.41
42 43 8.522830 TCACGATATTGATGACTATTATGCTGA 58.477 33.333 0.00 0.00 0.00 4.26
43 44 9.310716 CACGATATTGATGACTATTATGCTGAT 57.689 33.333 0.00 0.00 0.00 2.90
44 45 9.526713 ACGATATTGATGACTATTATGCTGATC 57.473 33.333 0.00 0.00 0.00 2.92
45 46 9.525409 CGATATTGATGACTATTATGCTGATCA 57.475 33.333 0.00 0.00 0.00 2.92
48 49 8.774890 ATTGATGACTATTATGCTGATCAGAC 57.225 34.615 27.04 17.11 0.00 3.51
49 50 6.695429 TGATGACTATTATGCTGATCAGACC 58.305 40.000 27.04 10.08 0.00 3.85
50 51 6.496218 TGATGACTATTATGCTGATCAGACCT 59.504 38.462 27.04 12.47 0.00 3.85
51 52 7.671398 TGATGACTATTATGCTGATCAGACCTA 59.329 37.037 27.04 11.54 0.00 3.08
52 53 8.606754 ATGACTATTATGCTGATCAGACCTAT 57.393 34.615 27.04 15.24 0.00 2.57
53 54 9.706529 ATGACTATTATGCTGATCAGACCTATA 57.293 33.333 27.04 14.32 0.00 1.31
54 55 9.706529 TGACTATTATGCTGATCAGACCTATAT 57.293 33.333 27.04 12.49 0.00 0.86
55 56 9.964303 GACTATTATGCTGATCAGACCTATATG 57.036 37.037 27.04 11.10 0.00 1.78
56 57 9.706529 ACTATTATGCTGATCAGACCTATATGA 57.293 33.333 27.04 7.07 0.00 2.15
57 58 9.964303 CTATTATGCTGATCAGACCTATATGAC 57.036 37.037 27.04 4.87 0.00 3.06
58 59 4.773323 TGCTGATCAGACCTATATGACG 57.227 45.455 27.04 0.00 0.00 4.35
59 60 4.398319 TGCTGATCAGACCTATATGACGA 58.602 43.478 27.04 0.00 0.00 4.20
60 61 4.216472 TGCTGATCAGACCTATATGACGAC 59.784 45.833 27.04 3.70 0.00 4.34
61 62 4.457603 GCTGATCAGACCTATATGACGACT 59.542 45.833 27.04 0.00 0.00 4.18
62 63 5.048364 GCTGATCAGACCTATATGACGACTT 60.048 44.000 27.04 0.00 0.00 3.01
63 64 6.515862 GCTGATCAGACCTATATGACGACTTT 60.516 42.308 27.04 0.00 0.00 2.66
64 65 6.739112 TGATCAGACCTATATGACGACTTTG 58.261 40.000 0.00 0.00 0.00 2.77
65 66 4.933330 TCAGACCTATATGACGACTTTGC 58.067 43.478 0.00 0.00 0.00 3.68
66 67 4.645136 TCAGACCTATATGACGACTTTGCT 59.355 41.667 0.00 0.00 0.00 3.91
67 68 5.826208 TCAGACCTATATGACGACTTTGCTA 59.174 40.000 0.00 0.00 0.00 3.49
68 69 6.017026 TCAGACCTATATGACGACTTTGCTAG 60.017 42.308 0.00 0.00 0.00 3.42
69 70 6.017026 CAGACCTATATGACGACTTTGCTAGA 60.017 42.308 0.00 0.00 0.00 2.43
70 71 6.205853 AGACCTATATGACGACTTTGCTAGAG 59.794 42.308 0.00 0.00 0.00 2.43
71 72 6.062749 ACCTATATGACGACTTTGCTAGAGA 58.937 40.000 0.00 0.00 0.00 3.10
72 73 6.717540 ACCTATATGACGACTTTGCTAGAGAT 59.282 38.462 0.00 0.00 0.00 2.75
73 74 7.026562 CCTATATGACGACTTTGCTAGAGATG 58.973 42.308 0.00 0.00 0.00 2.90
74 75 2.881074 TGACGACTTTGCTAGAGATGC 58.119 47.619 0.00 0.00 0.00 3.91
75 76 2.493675 TGACGACTTTGCTAGAGATGCT 59.506 45.455 0.00 0.00 0.00 3.79
76 77 3.112580 GACGACTTTGCTAGAGATGCTC 58.887 50.000 0.00 0.00 0.00 4.26
77 78 2.115595 CGACTTTGCTAGAGATGCTCG 58.884 52.381 0.00 0.00 35.36 5.03
78 79 2.468831 GACTTTGCTAGAGATGCTCGG 58.531 52.381 0.00 0.00 35.36 4.63
79 80 1.827969 ACTTTGCTAGAGATGCTCGGT 59.172 47.619 0.00 0.00 35.36 4.69
80 81 2.159170 ACTTTGCTAGAGATGCTCGGTC 60.159 50.000 0.00 0.00 35.36 4.79
81 82 1.769026 TTGCTAGAGATGCTCGGTCT 58.231 50.000 0.00 0.00 35.36 3.85
82 83 1.769026 TGCTAGAGATGCTCGGTCTT 58.231 50.000 0.00 0.00 35.36 3.01
83 84 2.103373 TGCTAGAGATGCTCGGTCTTT 58.897 47.619 0.00 0.00 35.36 2.52
84 85 2.497675 TGCTAGAGATGCTCGGTCTTTT 59.502 45.455 0.00 0.00 35.36 2.27
85 86 2.863137 GCTAGAGATGCTCGGTCTTTTG 59.137 50.000 0.00 0.00 35.36 2.44
86 87 3.429547 GCTAGAGATGCTCGGTCTTTTGA 60.430 47.826 0.00 0.00 35.36 2.69
87 88 3.902881 AGAGATGCTCGGTCTTTTGAT 57.097 42.857 0.00 0.00 35.36 2.57
88 89 3.529533 AGAGATGCTCGGTCTTTTGATG 58.470 45.455 0.00 0.00 35.36 3.07
89 90 2.012673 AGATGCTCGGTCTTTTGATGC 58.987 47.619 0.00 0.00 0.00 3.91
90 91 1.739466 GATGCTCGGTCTTTTGATGCA 59.261 47.619 0.00 0.00 0.00 3.96
91 92 1.159285 TGCTCGGTCTTTTGATGCAG 58.841 50.000 0.00 0.00 0.00 4.41
92 93 1.160137 GCTCGGTCTTTTGATGCAGT 58.840 50.000 0.00 0.00 0.00 4.40
93 94 1.135859 GCTCGGTCTTTTGATGCAGTG 60.136 52.381 0.00 0.00 0.00 3.66
94 95 1.466167 CTCGGTCTTTTGATGCAGTGG 59.534 52.381 0.00 0.00 0.00 4.00
95 96 1.202758 TCGGTCTTTTGATGCAGTGGT 60.203 47.619 0.00 0.00 0.00 4.16
96 97 1.069022 CGGTCTTTTGATGCAGTGGTG 60.069 52.381 0.00 0.00 0.00 4.17
97 98 1.270550 GGTCTTTTGATGCAGTGGTGG 59.729 52.381 0.00 0.00 0.00 4.61
98 99 2.229792 GTCTTTTGATGCAGTGGTGGA 58.770 47.619 0.00 0.00 0.00 4.02
99 100 2.622942 GTCTTTTGATGCAGTGGTGGAA 59.377 45.455 0.00 0.00 0.00 3.53
100 101 3.256631 GTCTTTTGATGCAGTGGTGGAAT 59.743 43.478 0.00 0.00 0.00 3.01
101 102 3.256383 TCTTTTGATGCAGTGGTGGAATG 59.744 43.478 0.00 0.00 0.00 2.67
102 103 0.889994 TTGATGCAGTGGTGGAATGC 59.110 50.000 0.00 0.00 40.40 3.56
104 105 4.595031 TGCAGTGGTGGAATGCAA 57.405 50.000 0.00 0.00 46.31 4.08
105 106 2.818111 TGCAGTGGTGGAATGCAAA 58.182 47.368 0.00 0.00 46.31 3.68
106 107 0.388659 TGCAGTGGTGGAATGCAAAC 59.611 50.000 0.00 0.00 46.31 2.93
107 108 0.664166 GCAGTGGTGGAATGCAAACG 60.664 55.000 0.00 0.00 39.75 3.60
108 109 0.950836 CAGTGGTGGAATGCAAACGA 59.049 50.000 0.00 0.00 0.00 3.85
109 110 1.541147 CAGTGGTGGAATGCAAACGAT 59.459 47.619 0.00 0.00 0.00 3.73
110 111 2.030007 CAGTGGTGGAATGCAAACGATT 60.030 45.455 0.00 0.00 0.00 3.34
111 112 2.030007 AGTGGTGGAATGCAAACGATTG 60.030 45.455 0.29 0.29 39.65 2.67
112 113 1.271934 TGGTGGAATGCAAACGATTGG 59.728 47.619 7.57 0.00 37.02 3.16
113 114 1.543802 GGTGGAATGCAAACGATTGGA 59.456 47.619 7.57 4.67 41.38 3.53
114 115 2.029470 GGTGGAATGCAAACGATTGGAA 60.029 45.455 3.33 0.00 40.47 3.53
115 116 3.244976 GTGGAATGCAAACGATTGGAAG 58.755 45.455 3.33 0.00 40.47 3.46
116 117 2.230992 TGGAATGCAAACGATTGGAAGG 59.769 45.455 3.33 0.00 40.47 3.46
117 118 2.231235 GGAATGCAAACGATTGGAAGGT 59.769 45.455 3.33 0.00 40.47 3.50
118 119 3.244976 GAATGCAAACGATTGGAAGGTG 58.755 45.455 3.33 0.00 40.47 4.00
119 120 1.974265 TGCAAACGATTGGAAGGTGA 58.026 45.000 7.57 0.00 37.02 4.02
120 121 2.302260 TGCAAACGATTGGAAGGTGAA 58.698 42.857 7.57 0.00 37.02 3.18
121 122 2.293122 TGCAAACGATTGGAAGGTGAAG 59.707 45.455 7.57 0.00 37.02 3.02
122 123 2.922335 GCAAACGATTGGAAGGTGAAGC 60.922 50.000 7.57 0.00 37.02 3.86
123 124 2.270352 AACGATTGGAAGGTGAAGCA 57.730 45.000 0.00 0.00 0.00 3.91
124 125 2.496899 ACGATTGGAAGGTGAAGCAT 57.503 45.000 0.00 0.00 0.00 3.79
125 126 2.795329 ACGATTGGAAGGTGAAGCATT 58.205 42.857 0.00 0.00 0.00 3.56
126 127 2.489329 ACGATTGGAAGGTGAAGCATTG 59.511 45.455 0.00 0.00 0.00 2.82
127 128 2.489329 CGATTGGAAGGTGAAGCATTGT 59.511 45.455 0.00 0.00 0.00 2.71
128 129 3.689161 CGATTGGAAGGTGAAGCATTGTA 59.311 43.478 0.00 0.00 0.00 2.41
129 130 4.201851 CGATTGGAAGGTGAAGCATTGTAG 60.202 45.833 0.00 0.00 0.00 2.74
130 131 4.365514 TTGGAAGGTGAAGCATTGTAGA 57.634 40.909 0.00 0.00 0.00 2.59
131 132 4.574674 TGGAAGGTGAAGCATTGTAGAT 57.425 40.909 0.00 0.00 0.00 1.98
132 133 4.922206 TGGAAGGTGAAGCATTGTAGATT 58.078 39.130 0.00 0.00 0.00 2.40
133 134 4.701651 TGGAAGGTGAAGCATTGTAGATTG 59.298 41.667 0.00 0.00 0.00 2.67
134 135 4.096984 GGAAGGTGAAGCATTGTAGATTGG 59.903 45.833 0.00 0.00 0.00 3.16
135 136 3.019564 AGGTGAAGCATTGTAGATTGGC 58.980 45.455 0.00 0.00 0.00 4.52
136 137 2.754552 GGTGAAGCATTGTAGATTGGCA 59.245 45.455 0.00 0.00 0.00 4.92
137 138 3.382546 GGTGAAGCATTGTAGATTGGCAT 59.617 43.478 0.00 0.00 0.00 4.40
138 139 4.357142 GTGAAGCATTGTAGATTGGCATG 58.643 43.478 0.00 0.00 0.00 4.06
139 140 3.382227 TGAAGCATTGTAGATTGGCATGG 59.618 43.478 0.00 0.00 0.00 3.66
140 141 1.684983 AGCATTGTAGATTGGCATGGC 59.315 47.619 13.29 13.29 0.00 4.40
141 142 1.684983 GCATTGTAGATTGGCATGGCT 59.315 47.619 21.08 0.00 0.00 4.75
142 143 2.886523 GCATTGTAGATTGGCATGGCTA 59.113 45.455 21.08 13.78 0.00 3.93
143 144 3.057736 GCATTGTAGATTGGCATGGCTAG 60.058 47.826 21.08 0.00 0.00 3.42
144 145 3.931907 TTGTAGATTGGCATGGCTAGT 57.068 42.857 21.08 7.17 0.00 2.57
145 146 3.198409 TGTAGATTGGCATGGCTAGTG 57.802 47.619 21.08 0.00 0.00 2.74
146 147 2.158769 TGTAGATTGGCATGGCTAGTGG 60.159 50.000 21.08 0.00 0.00 4.00
147 148 0.184451 AGATTGGCATGGCTAGTGGG 59.816 55.000 21.08 0.00 0.00 4.61
148 149 0.825010 GATTGGCATGGCTAGTGGGG 60.825 60.000 21.08 0.00 0.00 4.96
149 150 1.288508 ATTGGCATGGCTAGTGGGGA 61.289 55.000 21.08 0.00 0.00 4.81
150 151 1.505151 TTGGCATGGCTAGTGGGGAA 61.505 55.000 21.08 0.27 0.00 3.97
151 152 1.152881 GGCATGGCTAGTGGGGAAG 60.153 63.158 12.86 0.00 0.00 3.46
152 153 1.609783 GCATGGCTAGTGGGGAAGT 59.390 57.895 0.00 0.00 0.00 3.01
153 154 0.464554 GCATGGCTAGTGGGGAAGTC 60.465 60.000 0.00 0.00 0.00 3.01
154 155 0.181350 CATGGCTAGTGGGGAAGTCC 59.819 60.000 0.00 0.00 0.00 3.85
155 156 0.253160 ATGGCTAGTGGGGAAGTCCA 60.253 55.000 0.00 0.00 37.91 4.02
156 157 0.909610 TGGCTAGTGGGGAAGTCCAG 60.910 60.000 0.00 0.00 37.50 3.86
157 158 1.627297 GGCTAGTGGGGAAGTCCAGG 61.627 65.000 0.00 0.00 37.50 4.45
158 159 1.627297 GCTAGTGGGGAAGTCCAGGG 61.627 65.000 0.00 0.00 37.50 4.45
159 160 0.252742 CTAGTGGGGAAGTCCAGGGT 60.253 60.000 0.00 0.00 37.50 4.34
160 161 0.546747 TAGTGGGGAAGTCCAGGGTG 60.547 60.000 0.00 0.00 37.50 4.61
161 162 1.846124 GTGGGGAAGTCCAGGGTGA 60.846 63.158 0.00 0.00 37.50 4.02
162 163 1.538876 TGGGGAAGTCCAGGGTGAG 60.539 63.158 0.00 0.00 37.91 3.51
163 164 2.671682 GGGAAGTCCAGGGTGAGC 59.328 66.667 0.00 0.00 37.91 4.26
164 165 2.266055 GGAAGTCCAGGGTGAGCG 59.734 66.667 0.00 0.00 35.64 5.03
165 166 2.584391 GGAAGTCCAGGGTGAGCGT 61.584 63.158 0.00 0.00 35.64 5.07
166 167 1.374758 GAAGTCCAGGGTGAGCGTG 60.375 63.158 0.00 0.00 0.00 5.34
167 168 1.816863 GAAGTCCAGGGTGAGCGTGA 61.817 60.000 5.85 0.00 0.00 4.35
168 169 1.194781 AAGTCCAGGGTGAGCGTGAT 61.195 55.000 5.85 0.00 0.00 3.06
169 170 1.194781 AGTCCAGGGTGAGCGTGATT 61.195 55.000 5.85 0.00 0.00 2.57
170 171 1.021390 GTCCAGGGTGAGCGTGATTG 61.021 60.000 5.85 0.00 0.00 2.67
171 172 1.746615 CCAGGGTGAGCGTGATTGG 60.747 63.158 5.85 0.00 0.00 3.16
172 173 1.296392 CAGGGTGAGCGTGATTGGA 59.704 57.895 0.00 0.00 0.00 3.53
173 174 0.107508 CAGGGTGAGCGTGATTGGAT 60.108 55.000 0.00 0.00 0.00 3.41
174 175 0.179000 AGGGTGAGCGTGATTGGATC 59.821 55.000 0.00 0.00 0.00 3.36
175 176 0.107703 GGGTGAGCGTGATTGGATCA 60.108 55.000 0.00 0.00 36.84 2.92
184 185 1.275666 TGATTGGATCACTGGGTCGT 58.724 50.000 0.00 0.00 33.59 4.34
185 186 1.628340 TGATTGGATCACTGGGTCGTT 59.372 47.619 0.00 0.00 33.59 3.85
186 187 2.039746 TGATTGGATCACTGGGTCGTTT 59.960 45.455 0.00 0.00 33.59 3.60
187 188 3.262151 TGATTGGATCACTGGGTCGTTTA 59.738 43.478 0.00 0.00 33.59 2.01
188 189 3.773418 TTGGATCACTGGGTCGTTTAA 57.227 42.857 0.00 0.00 0.00 1.52
189 190 3.992943 TGGATCACTGGGTCGTTTAAT 57.007 42.857 0.00 0.00 0.00 1.40
190 191 4.295141 TGGATCACTGGGTCGTTTAATT 57.705 40.909 0.00 0.00 0.00 1.40
191 192 4.658063 TGGATCACTGGGTCGTTTAATTT 58.342 39.130 0.00 0.00 0.00 1.82
192 193 5.074115 TGGATCACTGGGTCGTTTAATTTT 58.926 37.500 0.00 0.00 0.00 1.82
193 194 5.536916 TGGATCACTGGGTCGTTTAATTTTT 59.463 36.000 0.00 0.00 0.00 1.94
194 195 5.861787 GGATCACTGGGTCGTTTAATTTTTG 59.138 40.000 0.00 0.00 0.00 2.44
195 196 5.838531 TCACTGGGTCGTTTAATTTTTGT 57.161 34.783 0.00 0.00 0.00 2.83
196 197 5.583495 TCACTGGGTCGTTTAATTTTTGTG 58.417 37.500 0.00 0.00 0.00 3.33
197 198 5.125739 TCACTGGGTCGTTTAATTTTTGTGT 59.874 36.000 0.00 0.00 0.00 3.72
198 199 6.318144 TCACTGGGTCGTTTAATTTTTGTGTA 59.682 34.615 0.00 0.00 0.00 2.90
199 200 7.013464 TCACTGGGTCGTTTAATTTTTGTGTAT 59.987 33.333 0.00 0.00 0.00 2.29
200 201 7.114247 CACTGGGTCGTTTAATTTTTGTGTATG 59.886 37.037 0.00 0.00 0.00 2.39
201 202 5.921408 TGGGTCGTTTAATTTTTGTGTATGC 59.079 36.000 0.00 0.00 0.00 3.14
202 203 6.153756 GGGTCGTTTAATTTTTGTGTATGCT 58.846 36.000 0.00 0.00 0.00 3.79
203 204 6.307077 GGGTCGTTTAATTTTTGTGTATGCTC 59.693 38.462 0.00 0.00 0.00 4.26
204 205 6.858993 GGTCGTTTAATTTTTGTGTATGCTCA 59.141 34.615 0.00 0.00 0.00 4.26
205 206 7.149031 GGTCGTTTAATTTTTGTGTATGCTCAC 60.149 37.037 0.00 0.00 38.63 3.51
206 207 6.575572 TCGTTTAATTTTTGTGTATGCTCACG 59.424 34.615 0.00 0.00 40.74 4.35
207 208 6.358558 CGTTTAATTTTTGTGTATGCTCACGT 59.641 34.615 0.00 0.00 40.74 4.49
208 209 7.490055 GTTTAATTTTTGTGTATGCTCACGTG 58.510 34.615 9.94 9.94 40.74 4.49
209 210 2.679355 TTTTGTGTATGCTCACGTGC 57.321 45.000 11.67 0.00 40.74 5.34
210 211 0.871722 TTTGTGTATGCTCACGTGCC 59.128 50.000 11.67 4.81 40.74 5.01
211 212 0.034756 TTGTGTATGCTCACGTGCCT 59.965 50.000 11.67 0.00 40.74 4.75
212 213 0.389817 TGTGTATGCTCACGTGCCTC 60.390 55.000 11.67 2.55 40.74 4.70
213 214 1.153842 TGTATGCTCACGTGCCTCG 60.154 57.895 11.67 0.00 46.00 4.63
214 215 2.202743 TATGCTCACGTGCCTCGC 60.203 61.111 11.67 10.98 44.19 5.03
215 216 3.000693 TATGCTCACGTGCCTCGCA 62.001 57.895 11.67 16.19 44.19 5.10
216 217 2.296814 TATGCTCACGTGCCTCGCAT 62.297 55.000 25.70 25.70 41.91 4.73
226 227 4.568229 CGTGCCTCGCATGTATAATTAG 57.432 45.455 0.00 0.00 41.91 1.73
227 228 4.234574 CGTGCCTCGCATGTATAATTAGA 58.765 43.478 0.00 0.00 41.91 2.10
228 229 4.324669 CGTGCCTCGCATGTATAATTAGAG 59.675 45.833 0.00 0.00 41.91 2.43
229 230 5.230942 GTGCCTCGCATGTATAATTAGAGT 58.769 41.667 0.00 0.00 41.91 3.24
230 231 5.696724 GTGCCTCGCATGTATAATTAGAGTT 59.303 40.000 0.00 0.00 41.91 3.01
231 232 6.202954 GTGCCTCGCATGTATAATTAGAGTTT 59.797 38.462 0.00 0.00 41.91 2.66
232 233 6.765989 TGCCTCGCATGTATAATTAGAGTTTT 59.234 34.615 0.00 0.00 31.71 2.43
233 234 7.282224 TGCCTCGCATGTATAATTAGAGTTTTT 59.718 33.333 0.00 0.00 31.71 1.94
234 235 8.770828 GCCTCGCATGTATAATTAGAGTTTTTA 58.229 33.333 0.00 0.00 0.00 1.52
236 237 9.779237 CTCGCATGTATAATTAGAGTTTTTACG 57.221 33.333 0.00 0.00 0.00 3.18
237 238 8.757789 TCGCATGTATAATTAGAGTTTTTACGG 58.242 33.333 0.00 0.00 0.00 4.02
238 239 8.545420 CGCATGTATAATTAGAGTTTTTACGGT 58.455 33.333 0.00 0.00 0.00 4.83
248 249 9.755804 ATTAGAGTTTTTACGGTAGCTTATACC 57.244 33.333 0.00 0.00 0.00 2.73
256 257 3.562567 GGTAGCTTATACCGCTGAGAG 57.437 52.381 0.00 0.00 38.38 3.20
257 258 2.229302 GGTAGCTTATACCGCTGAGAGG 59.771 54.545 0.00 0.00 38.38 3.69
258 259 1.333177 AGCTTATACCGCTGAGAGGG 58.667 55.000 7.27 0.00 36.15 4.30
264 265 3.465403 CCGCTGAGAGGGGGTGAG 61.465 72.222 0.00 0.00 43.90 3.51
265 266 4.154347 CGCTGAGAGGGGGTGAGC 62.154 72.222 0.00 0.00 0.00 4.26
266 267 3.005539 GCTGAGAGGGGGTGAGCA 61.006 66.667 0.00 0.00 0.00 4.26
267 268 3.028921 GCTGAGAGGGGGTGAGCAG 62.029 68.421 0.00 0.00 0.00 4.24
268 269 1.611851 CTGAGAGGGGGTGAGCAGT 60.612 63.158 0.00 0.00 0.00 4.40
269 270 0.324738 CTGAGAGGGGGTGAGCAGTA 60.325 60.000 0.00 0.00 0.00 2.74
270 271 0.339859 TGAGAGGGGGTGAGCAGTAT 59.660 55.000 0.00 0.00 0.00 2.12
271 272 0.755686 GAGAGGGGGTGAGCAGTATG 59.244 60.000 0.00 0.00 40.87 2.39
272 273 0.339859 AGAGGGGGTGAGCAGTATGA 59.660 55.000 0.00 0.00 39.69 2.15
273 274 0.755686 GAGGGGGTGAGCAGTATGAG 59.244 60.000 0.00 0.00 39.69 2.90
274 275 0.043334 AGGGGGTGAGCAGTATGAGT 59.957 55.000 0.00 0.00 39.69 3.41
275 276 1.291033 AGGGGGTGAGCAGTATGAGTA 59.709 52.381 0.00 0.00 39.69 2.59
276 277 2.116238 GGGGGTGAGCAGTATGAGTAA 58.884 52.381 0.00 0.00 39.69 2.24
277 278 2.504175 GGGGGTGAGCAGTATGAGTAAA 59.496 50.000 0.00 0.00 39.69 2.01
278 279 3.054655 GGGGGTGAGCAGTATGAGTAAAA 60.055 47.826 0.00 0.00 39.69 1.52
279 280 4.385310 GGGGGTGAGCAGTATGAGTAAAAT 60.385 45.833 0.00 0.00 39.69 1.82
280 281 4.816925 GGGGTGAGCAGTATGAGTAAAATC 59.183 45.833 0.00 0.00 39.69 2.17
281 282 5.396884 GGGGTGAGCAGTATGAGTAAAATCT 60.397 44.000 0.00 0.00 39.69 2.40
282 283 5.525378 GGGTGAGCAGTATGAGTAAAATCTG 59.475 44.000 0.00 0.00 39.69 2.90
283 284 5.525378 GGTGAGCAGTATGAGTAAAATCTGG 59.475 44.000 0.00 0.00 39.69 3.86
284 285 5.007136 GTGAGCAGTATGAGTAAAATCTGGC 59.993 44.000 0.00 0.00 39.69 4.85
285 286 4.455606 AGCAGTATGAGTAAAATCTGGCC 58.544 43.478 0.00 0.00 39.69 5.36
286 287 3.248602 GCAGTATGAGTAAAATCTGGCCG 59.751 47.826 0.00 0.00 39.69 6.13
287 288 4.442706 CAGTATGAGTAAAATCTGGCCGT 58.557 43.478 0.00 0.00 39.69 5.68
288 289 4.876107 CAGTATGAGTAAAATCTGGCCGTT 59.124 41.667 0.00 0.00 39.69 4.44
289 290 6.046593 CAGTATGAGTAAAATCTGGCCGTTA 58.953 40.000 0.00 0.00 39.69 3.18
290 291 6.537301 CAGTATGAGTAAAATCTGGCCGTTAA 59.463 38.462 0.00 0.00 39.69 2.01
291 292 7.226720 CAGTATGAGTAAAATCTGGCCGTTAAT 59.773 37.037 0.00 0.00 39.69 1.40
292 293 7.773690 AGTATGAGTAAAATCTGGCCGTTAATT 59.226 33.333 0.00 0.00 0.00 1.40
293 294 6.827586 TGAGTAAAATCTGGCCGTTAATTT 57.172 33.333 0.00 0.00 0.00 1.82
294 295 7.222000 TGAGTAAAATCTGGCCGTTAATTTT 57.778 32.000 16.45 16.45 35.90 1.82
295 296 7.662897 TGAGTAAAATCTGGCCGTTAATTTTT 58.337 30.769 17.07 11.05 34.25 1.94
296 297 7.596995 TGAGTAAAATCTGGCCGTTAATTTTTG 59.403 33.333 17.07 0.00 34.25 2.44
297 298 7.662897 AGTAAAATCTGGCCGTTAATTTTTGA 58.337 30.769 17.07 3.98 34.25 2.69
298 299 8.311109 AGTAAAATCTGGCCGTTAATTTTTGAT 58.689 29.630 17.07 6.43 34.25 2.57
299 300 6.966435 AAATCTGGCCGTTAATTTTTGATG 57.034 33.333 0.00 0.00 0.00 3.07
300 301 4.448537 TCTGGCCGTTAATTTTTGATGG 57.551 40.909 0.00 0.00 0.00 3.51
301 302 2.929398 CTGGCCGTTAATTTTTGATGGC 59.071 45.455 0.00 6.69 43.22 4.40
302 303 2.300152 TGGCCGTTAATTTTTGATGGCA 59.700 40.909 14.75 0.00 45.22 4.92
303 304 3.055530 TGGCCGTTAATTTTTGATGGCAT 60.056 39.130 14.75 0.00 45.22 4.40
304 305 3.938334 GGCCGTTAATTTTTGATGGCATT 59.062 39.130 14.75 0.00 45.22 3.56
305 306 4.201802 GGCCGTTAATTTTTGATGGCATTG 60.202 41.667 14.75 0.00 45.22 2.82
306 307 4.391523 GCCGTTAATTTTTGATGGCATTGT 59.608 37.500 0.00 0.00 43.39 2.71
307 308 5.106752 GCCGTTAATTTTTGATGGCATTGTT 60.107 36.000 0.00 0.00 43.39 2.83
308 309 6.305639 CCGTTAATTTTTGATGGCATTGTTG 58.694 36.000 0.00 0.00 0.00 3.33
309 310 6.146837 CCGTTAATTTTTGATGGCATTGTTGA 59.853 34.615 0.00 0.00 0.00 3.18
310 311 7.008859 CGTTAATTTTTGATGGCATTGTTGAC 58.991 34.615 0.00 0.00 0.00 3.18
311 312 7.095691 CGTTAATTTTTGATGGCATTGTTGACT 60.096 33.333 0.00 0.00 0.00 3.41
312 313 8.558700 GTTAATTTTTGATGGCATTGTTGACTT 58.441 29.630 0.00 0.00 0.00 3.01
313 314 7.571080 AATTTTTGATGGCATTGTTGACTTT 57.429 28.000 0.00 0.00 0.00 2.66
314 315 6.998968 TTTTTGATGGCATTGTTGACTTTT 57.001 29.167 0.00 0.00 0.00 2.27
315 316 6.998968 TTTTGATGGCATTGTTGACTTTTT 57.001 29.167 0.00 0.00 0.00 1.94
316 317 6.601741 TTTGATGGCATTGTTGACTTTTTC 57.398 33.333 0.00 0.00 0.00 2.29
317 318 5.273674 TGATGGCATTGTTGACTTTTTCA 57.726 34.783 0.00 0.00 0.00 2.69
318 319 5.049167 TGATGGCATTGTTGACTTTTTCAC 58.951 37.500 0.00 0.00 32.26 3.18
319 320 3.791245 TGGCATTGTTGACTTTTTCACC 58.209 40.909 0.00 0.00 32.26 4.02
320 321 3.450457 TGGCATTGTTGACTTTTTCACCT 59.550 39.130 0.00 0.00 32.26 4.00
321 322 4.646945 TGGCATTGTTGACTTTTTCACCTA 59.353 37.500 0.00 0.00 32.26 3.08
322 323 5.127845 TGGCATTGTTGACTTTTTCACCTAA 59.872 36.000 0.00 0.00 32.26 2.69
323 324 6.045955 GGCATTGTTGACTTTTTCACCTAAA 58.954 36.000 0.00 0.00 32.26 1.85
324 325 6.536941 GGCATTGTTGACTTTTTCACCTAAAA 59.463 34.615 0.00 0.00 35.24 1.52
325 326 7.398746 GCATTGTTGACTTTTTCACCTAAAAC 58.601 34.615 0.00 0.00 36.79 2.43
326 327 7.277760 GCATTGTTGACTTTTTCACCTAAAACT 59.722 33.333 0.00 0.00 36.79 2.66
327 328 8.594687 CATTGTTGACTTTTTCACCTAAAACTG 58.405 33.333 0.00 0.00 36.79 3.16
328 329 6.626302 TGTTGACTTTTTCACCTAAAACTGG 58.374 36.000 0.00 0.00 36.79 4.00
329 330 6.434652 TGTTGACTTTTTCACCTAAAACTGGA 59.565 34.615 0.00 0.00 36.79 3.86
330 331 7.039644 TGTTGACTTTTTCACCTAAAACTGGAA 60.040 33.333 0.00 0.00 36.79 3.53
331 332 7.654022 TGACTTTTTCACCTAAAACTGGAAT 57.346 32.000 0.00 0.00 36.79 3.01
332 333 8.073467 TGACTTTTTCACCTAAAACTGGAATT 57.927 30.769 0.00 0.00 36.79 2.17
333 334 8.536175 TGACTTTTTCACCTAAAACTGGAATTT 58.464 29.630 0.00 0.00 36.79 1.82
334 335 8.942338 ACTTTTTCACCTAAAACTGGAATTTC 57.058 30.769 0.00 0.00 36.79 2.17
335 336 7.985184 ACTTTTTCACCTAAAACTGGAATTTCC 59.015 33.333 8.59 8.59 36.79 3.13
336 337 7.425224 TTTTCACCTAAAACTGGAATTTCCA 57.575 32.000 17.09 17.09 36.83 3.53
337 338 6.399639 TTCACCTAAAACTGGAATTTCCAC 57.600 37.500 14.24 0.00 42.67 4.02
338 339 5.450453 TCACCTAAAACTGGAATTTCCACA 58.550 37.500 14.24 0.00 42.67 4.17
339 340 5.894393 TCACCTAAAACTGGAATTTCCACAA 59.106 36.000 14.24 0.00 42.67 3.33
340 341 6.040391 TCACCTAAAACTGGAATTTCCACAAG 59.960 38.462 14.24 7.73 42.67 3.16
341 342 5.221441 ACCTAAAACTGGAATTTCCACAAGC 60.221 40.000 14.24 0.00 42.67 4.01
342 343 3.369546 AAACTGGAATTTCCACAAGCG 57.630 42.857 14.24 7.02 42.67 4.68
343 344 1.247567 ACTGGAATTTCCACAAGCGG 58.752 50.000 14.24 6.33 42.67 5.52
344 345 0.527565 CTGGAATTTCCACAAGCGGG 59.472 55.000 14.24 0.00 42.67 6.13
345 346 0.897863 TGGAATTTCCACAAGCGGGG 60.898 55.000 14.24 0.00 42.67 5.73
346 347 1.215382 GAATTTCCACAAGCGGGGC 59.785 57.895 0.00 0.00 0.00 5.80
347 348 1.531739 GAATTTCCACAAGCGGGGCA 61.532 55.000 0.00 0.00 0.00 5.36
348 349 1.815817 AATTTCCACAAGCGGGGCAC 61.816 55.000 0.00 0.00 0.00 5.01
349 350 2.992817 ATTTCCACAAGCGGGGCACA 62.993 55.000 0.00 0.00 0.00 4.57
350 351 4.947147 TCCACAAGCGGGGCACAC 62.947 66.667 0.00 0.00 0.00 3.82
353 354 3.931247 ACAAGCGGGGCACACGTA 61.931 61.111 0.00 0.00 0.00 3.57
354 355 3.118454 CAAGCGGGGCACACGTAG 61.118 66.667 0.00 0.00 0.00 3.51
362 363 3.177600 GCACACGTAGCCATGTGG 58.822 61.111 9.34 0.00 45.21 4.17
363 364 1.671054 GCACACGTAGCCATGTGGT 60.671 57.895 9.34 0.00 45.21 4.16
364 365 1.911293 GCACACGTAGCCATGTGGTG 61.911 60.000 9.34 6.17 45.21 4.17
387 388 4.595538 TGCGCTCGTTCGTTGGGT 62.596 61.111 9.73 0.00 0.00 4.51
398 399 0.671163 TCGTTGGGTGGCGTTGATAC 60.671 55.000 0.00 0.00 0.00 2.24
413 414 1.140816 GATACGAAGCGGCCTTCATC 58.859 55.000 0.00 7.82 46.25 2.92
414 415 0.753262 ATACGAAGCGGCCTTCATCT 59.247 50.000 0.00 0.00 46.25 2.90
415 416 0.179111 TACGAAGCGGCCTTCATCTG 60.179 55.000 0.00 3.10 46.25 2.90
416 417 2.817423 CGAAGCGGCCTTCATCTGC 61.817 63.158 0.00 0.00 46.25 4.26
417 418 1.746615 GAAGCGGCCTTCATCTGCA 60.747 57.895 0.00 0.00 45.44 4.41
418 419 1.303561 AAGCGGCCTTCATCTGCAA 60.304 52.632 0.00 0.00 38.26 4.08
420 421 3.056313 GCGGCCTTCATCTGCAACC 62.056 63.158 0.00 0.00 35.94 3.77
463 470 0.737715 CTCTTCTTCTTGCCGTCCGG 60.738 60.000 0.24 0.24 38.57 5.14
528 536 7.673641 TTTAGGGACTTTGGGTTCGTATATA 57.326 36.000 0.00 0.00 41.75 0.86
529 537 7.860649 TTAGGGACTTTGGGTTCGTATATAT 57.139 36.000 0.00 0.00 41.75 0.86
530 538 8.954834 TTAGGGACTTTGGGTTCGTATATATA 57.045 34.615 0.00 0.00 41.75 0.86
531 539 9.551339 TTAGGGACTTTGGGTTCGTATATATAT 57.449 33.333 0.00 0.00 41.75 0.86
551 559 0.969894 CTGAGTTCAGGTTCTCCCGT 59.030 55.000 1.09 0.00 40.20 5.28
654 665 0.811616 ACGAATCGAATCCCAGCTGC 60.812 55.000 10.55 0.00 0.00 5.25
674 685 2.329379 CGAGAGCTAGCGTCAGTTTTT 58.671 47.619 9.55 0.00 0.00 1.94
676 687 2.668945 GAGAGCTAGCGTCAGTTTTTCC 59.331 50.000 9.55 0.00 0.00 3.13
733 744 1.898472 CTGTGACTGTGAGACCCATCT 59.102 52.381 0.00 0.00 38.15 2.90
776 787 2.434884 CGGCTGCCACGTCTTGAT 60.435 61.111 20.29 0.00 0.00 2.57
941 972 2.346803 CCTGTGCGCACAAACTACTAT 58.653 47.619 39.43 0.00 41.33 2.12
942 973 3.517602 CCTGTGCGCACAAACTACTATA 58.482 45.455 39.43 16.33 41.33 1.31
989 2857 2.861462 ACTATTCTCGTCAGCTCTGC 57.139 50.000 0.00 0.00 0.00 4.26
1063 2931 4.047059 TCGTCGTTCTGGTCGCCC 62.047 66.667 0.00 0.00 0.00 6.13
1140 3008 2.104530 GCGTTCTCGGCCCTCTAC 59.895 66.667 0.00 0.00 37.56 2.59
1141 3009 2.806237 CGTTCTCGGCCCTCTACC 59.194 66.667 0.00 0.00 0.00 3.18
1142 3010 2.783288 CGTTCTCGGCCCTCTACCC 61.783 68.421 0.00 0.00 0.00 3.69
1143 3011 2.441532 TTCTCGGCCCTCTACCCG 60.442 66.667 0.00 0.00 45.64 5.28
1272 3155 2.268920 GGACAGCTTGGATCGGCA 59.731 61.111 6.70 0.00 0.00 5.69
1273 3156 1.153086 GGACAGCTTGGATCGGCAT 60.153 57.895 6.70 0.00 0.00 4.40
1274 3157 1.442526 GGACAGCTTGGATCGGCATG 61.443 60.000 6.70 0.00 0.00 4.06
1275 3158 2.056481 GACAGCTTGGATCGGCATGC 62.056 60.000 9.90 9.90 0.00 4.06
1276 3159 2.517875 AGCTTGGATCGGCATGCC 60.518 61.111 27.67 27.67 0.00 4.40
1322 3209 6.809689 ACGTACACGAGAAATGATGTGAATTA 59.190 34.615 9.04 0.00 43.02 1.40
1323 3210 7.111139 CGTACACGAGAAATGATGTGAATTAC 58.889 38.462 0.00 0.00 43.02 1.89
1324 3211 7.009265 CGTACACGAGAAATGATGTGAATTACT 59.991 37.037 0.00 0.00 43.02 2.24
1420 3341 8.810990 TTTTCCTTTCTTTCTTGTACAGGTAA 57.189 30.769 4.75 0.87 0.00 2.85
1440 3361 2.507102 CCTAGAGTGGTGCACGCG 60.507 66.667 11.45 3.53 39.08 6.01
1474 3398 0.999406 TCTCGCTGAAACGCATTAGC 59.001 50.000 0.00 0.00 37.42 3.09
1495 3419 4.094212 GCAATTCGAGCTGTGATTCTTTC 58.906 43.478 0.00 0.00 0.00 2.62
1496 3420 4.142730 GCAATTCGAGCTGTGATTCTTTCT 60.143 41.667 0.00 0.00 0.00 2.52
1502 3426 5.121298 TCGAGCTGTGATTCTTTCTCAATTG 59.879 40.000 0.00 0.00 0.00 2.32
1516 3440 8.621286 TCTTTCTCAATTGGTTTGAACTTACTC 58.379 33.333 5.42 0.00 43.64 2.59
1532 3746 0.169230 ACTCGAGCTGTCTAGTTGCG 59.831 55.000 13.61 0.00 0.00 4.85
1533 3747 1.136872 CTCGAGCTGTCTAGTTGCGC 61.137 60.000 0.00 0.00 0.00 6.09
1551 3765 2.741612 CGCAACTGGCAATCTCAAAAA 58.258 42.857 0.00 0.00 45.17 1.94
1676 3983 2.231721 TCGTACATCCATGACCGAAACA 59.768 45.455 0.00 0.00 33.31 2.83
1695 4002 7.254353 CCGAAACAAAACTTATAGCTAGCTACC 60.254 40.741 26.41 0.00 0.00 3.18
1696 4003 7.277098 CGAAACAAAACTTATAGCTAGCTACCA 59.723 37.037 26.41 14.52 0.00 3.25
1703 4010 6.868622 ACTTATAGCTAGCTACCATATGTGC 58.131 40.000 26.41 3.44 0.00 4.57
1708 4015 4.285517 AGCTAGCTACCATATGTGCTCATT 59.714 41.667 17.69 0.00 34.56 2.57
1710 4017 4.694760 AGCTACCATATGTGCTCATTGA 57.305 40.909 6.57 0.00 35.70 2.57
1711 4018 4.384056 AGCTACCATATGTGCTCATTGAC 58.616 43.478 6.57 0.00 35.70 3.18
1744 4051 7.675062 TCTTTTTAATGCTCCATTTTAAGCCA 58.325 30.769 0.00 0.00 37.73 4.75
1749 4056 9.598517 TTTAATGCTCCATTTTAAGCCAATAAG 57.401 29.630 0.00 0.00 37.73 1.73
1750 4057 7.422465 AATGCTCCATTTTAAGCCAATAAGA 57.578 32.000 0.00 0.00 37.73 2.10
1764 4071 5.362430 AGCCAATAAGAAACACCTTTTGTCA 59.638 36.000 0.00 0.00 37.51 3.58
1765 4072 6.045955 GCCAATAAGAAACACCTTTTGTCAA 58.954 36.000 0.00 0.00 37.51 3.18
1799 4107 1.305219 TACTGGCGTTGCAGCATTCC 61.305 55.000 0.00 0.00 39.27 3.01
1843 4151 2.135664 AGGTGTTTCTCAACGAGACG 57.864 50.000 0.00 0.00 38.51 4.18
1844 4152 1.679680 AGGTGTTTCTCAACGAGACGA 59.320 47.619 0.00 0.00 38.51 4.20
1845 4153 2.052157 GGTGTTTCTCAACGAGACGAG 58.948 52.381 0.00 0.00 38.51 4.18
1846 4154 2.287427 GGTGTTTCTCAACGAGACGAGA 60.287 50.000 0.00 0.00 38.51 4.04
1847 4155 2.720067 GTGTTTCTCAACGAGACGAGAC 59.280 50.000 0.00 0.00 38.51 3.36
1884 4196 0.754472 TCCCGGAACTTTCGTTGTCT 59.246 50.000 0.73 0.00 32.39 3.41
1885 4197 0.865769 CCCGGAACTTTCGTTGTCTG 59.134 55.000 0.73 0.00 32.39 3.51
1887 4199 1.525619 CCGGAACTTTCGTTGTCTGAC 59.474 52.381 0.00 0.00 32.39 3.51
1893 4205 3.458189 ACTTTCGTTGTCTGACTTGAGG 58.542 45.455 9.51 1.79 0.00 3.86
1909 4222 4.875713 GGTACCCCGGCTGCATGG 62.876 72.222 0.00 2.19 0.00 3.66
1910 4223 4.109675 GTACCCCGGCTGCATGGT 62.110 66.667 0.50 7.08 34.85 3.55
1911 4224 2.365768 TACCCCGGCTGCATGGTA 60.366 61.111 0.50 6.05 32.27 3.25
1974 4299 2.357760 GCGGCCACTTTACGGTCA 60.358 61.111 2.24 0.00 0.00 4.02
2063 4388 1.722011 AGCAACGGACCGAACATAAG 58.278 50.000 23.38 2.93 0.00 1.73
2067 4392 2.573941 ACGGACCGAACATAAGTAGC 57.426 50.000 23.38 0.00 0.00 3.58
2072 4397 0.844503 CCGAACATAAGTAGCGCGAC 59.155 55.000 12.10 13.21 0.00 5.19
2093 4418 2.676471 ATGTTTGCTCGCCCCCAC 60.676 61.111 0.00 0.00 0.00 4.61
2126 4451 6.838612 ACTAGCTGACTTGATAAGAATCTCCT 59.161 38.462 0.00 0.00 32.93 3.69
2161 4486 9.439500 CCCTTTGAATTTTGACACATGAAATAT 57.561 29.630 0.00 0.00 0.00 1.28
2167 4492 4.811555 TTGACACATGAAATATAGCGCC 57.188 40.909 2.29 0.00 0.00 6.53
2179 4504 0.818296 ATAGCGCCGTGTTCTTCTCT 59.182 50.000 2.29 0.00 0.00 3.10
2180 4505 0.170561 TAGCGCCGTGTTCTTCTCTC 59.829 55.000 2.29 0.00 0.00 3.20
2181 4506 1.080434 GCGCCGTGTTCTTCTCTCT 60.080 57.895 0.00 0.00 0.00 3.10
2182 4507 1.073768 GCGCCGTGTTCTTCTCTCTC 61.074 60.000 0.00 0.00 0.00 3.20
2183 4508 0.523966 CGCCGTGTTCTTCTCTCTCT 59.476 55.000 0.00 0.00 0.00 3.10
2184 4509 1.466697 CGCCGTGTTCTTCTCTCTCTC 60.467 57.143 0.00 0.00 0.00 3.20
2185 4510 1.816224 GCCGTGTTCTTCTCTCTCTCT 59.184 52.381 0.00 0.00 0.00 3.10
2186 4511 2.159435 GCCGTGTTCTTCTCTCTCTCTC 60.159 54.545 0.00 0.00 0.00 3.20
2187 4512 3.343617 CCGTGTTCTTCTCTCTCTCTCT 58.656 50.000 0.00 0.00 0.00 3.10
2188 4513 3.374058 CCGTGTTCTTCTCTCTCTCTCTC 59.626 52.174 0.00 0.00 0.00 3.20
2189 4514 4.253685 CGTGTTCTTCTCTCTCTCTCTCT 58.746 47.826 0.00 0.00 0.00 3.10
2190 4515 4.330074 CGTGTTCTTCTCTCTCTCTCTCTC 59.670 50.000 0.00 0.00 0.00 3.20
2191 4516 5.491982 GTGTTCTTCTCTCTCTCTCTCTCT 58.508 45.833 0.00 0.00 0.00 3.10
2192 4517 5.582665 GTGTTCTTCTCTCTCTCTCTCTCTC 59.417 48.000 0.00 0.00 0.00 3.20
2193 4518 5.485353 TGTTCTTCTCTCTCTCTCTCTCTCT 59.515 44.000 0.00 0.00 0.00 3.10
2194 4519 5.860941 TCTTCTCTCTCTCTCTCTCTCTC 57.139 47.826 0.00 0.00 0.00 3.20
2195 4520 5.523588 TCTTCTCTCTCTCTCTCTCTCTCT 58.476 45.833 0.00 0.00 0.00 3.10
2196 4521 5.596361 TCTTCTCTCTCTCTCTCTCTCTCTC 59.404 48.000 0.00 0.00 0.00 3.20
2197 4522 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
2198 4523 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2199 4524 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2200 4525 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2201 4526 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2202 4527 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2203 4528 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2204 4529 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2205 4530 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2206 4531 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2207 4532 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2208 4533 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2209 4534 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2210 4535 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2211 4536 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2212 4537 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2213 4538 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2214 4539 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2215 4540 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2216 4541 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2217 4542 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2218 4543 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2219 4544 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2220 4545 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2221 4546 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2222 4547 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2223 4548 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2224 4549 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2225 4550 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2226 4551 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2227 4552 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2228 4553 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2229 4554 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2230 4555 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.718940 ATCGTGATTTTGGCCTAAAAGG 57.281 40.909 16.33 7.02 41.26 3.11
2 3 7.479980 TCAATATCGTGATTTTGGCCTAAAAG 58.520 34.615 16.33 8.53 41.26 2.27
3 4 7.397892 TCAATATCGTGATTTTGGCCTAAAA 57.602 32.000 16.33 14.55 42.10 1.52
4 5 7.284261 TCATCAATATCGTGATTTTGGCCTAAA 59.716 33.333 14.79 14.79 36.04 1.85
5 6 6.770303 TCATCAATATCGTGATTTTGGCCTAA 59.230 34.615 3.32 0.00 36.04 2.69
6 7 6.204688 GTCATCAATATCGTGATTTTGGCCTA 59.795 38.462 3.32 0.00 36.04 3.93
7 8 5.009010 GTCATCAATATCGTGATTTTGGCCT 59.991 40.000 3.32 0.00 36.04 5.19
8 9 5.009010 AGTCATCAATATCGTGATTTTGGCC 59.991 40.000 11.43 0.00 36.04 5.36
9 10 6.064846 AGTCATCAATATCGTGATTTTGGC 57.935 37.500 11.43 3.22 36.04 4.52
14 15 9.881649 AGCATAATAGTCATCAATATCGTGATT 57.118 29.630 0.00 0.00 36.04 2.57
15 16 9.310716 CAGCATAATAGTCATCAATATCGTGAT 57.689 33.333 0.00 0.00 38.84 3.06
16 17 8.522830 TCAGCATAATAGTCATCAATATCGTGA 58.477 33.333 0.00 0.00 0.00 4.35
17 18 8.693542 TCAGCATAATAGTCATCAATATCGTG 57.306 34.615 0.00 0.00 0.00 4.35
18 19 9.526713 GATCAGCATAATAGTCATCAATATCGT 57.473 33.333 0.00 0.00 0.00 3.73
19 20 9.525409 TGATCAGCATAATAGTCATCAATATCG 57.475 33.333 0.00 0.00 0.00 2.92
22 23 9.866798 GTCTGATCAGCATAATAGTCATCAATA 57.133 33.333 18.36 0.00 0.00 1.90
23 24 7.823310 GGTCTGATCAGCATAATAGTCATCAAT 59.177 37.037 18.36 0.00 0.00 2.57
24 25 7.015974 AGGTCTGATCAGCATAATAGTCATCAA 59.984 37.037 18.36 0.00 0.00 2.57
25 26 6.496218 AGGTCTGATCAGCATAATAGTCATCA 59.504 38.462 18.36 0.00 0.00 3.07
26 27 6.934056 AGGTCTGATCAGCATAATAGTCATC 58.066 40.000 18.36 0.00 0.00 2.92
27 28 6.931790 AGGTCTGATCAGCATAATAGTCAT 57.068 37.500 18.36 0.00 0.00 3.06
28 29 9.706529 ATATAGGTCTGATCAGCATAATAGTCA 57.293 33.333 18.36 0.00 0.00 3.41
29 30 9.964303 CATATAGGTCTGATCAGCATAATAGTC 57.036 37.037 18.36 0.00 0.00 2.59
30 31 9.706529 TCATATAGGTCTGATCAGCATAATAGT 57.293 33.333 18.36 3.54 0.00 2.12
31 32 9.964303 GTCATATAGGTCTGATCAGCATAATAG 57.036 37.037 18.36 8.83 0.00 1.73
32 33 8.624776 CGTCATATAGGTCTGATCAGCATAATA 58.375 37.037 18.36 12.58 0.00 0.98
33 34 7.340487 TCGTCATATAGGTCTGATCAGCATAAT 59.660 37.037 18.36 10.92 0.00 1.28
34 35 6.659242 TCGTCATATAGGTCTGATCAGCATAA 59.341 38.462 18.36 4.12 0.00 1.90
35 36 6.094186 GTCGTCATATAGGTCTGATCAGCATA 59.906 42.308 18.36 14.51 0.00 3.14
36 37 5.012893 TCGTCATATAGGTCTGATCAGCAT 58.987 41.667 18.36 12.84 0.00 3.79
37 38 4.216472 GTCGTCATATAGGTCTGATCAGCA 59.784 45.833 18.36 4.35 0.00 4.41
38 39 4.457603 AGTCGTCATATAGGTCTGATCAGC 59.542 45.833 18.36 12.59 0.00 4.26
39 40 6.567687 AAGTCGTCATATAGGTCTGATCAG 57.432 41.667 17.07 17.07 0.00 2.90
40 41 6.735968 GCAAAGTCGTCATATAGGTCTGATCA 60.736 42.308 0.00 0.00 0.00 2.92
41 42 5.631512 GCAAAGTCGTCATATAGGTCTGATC 59.368 44.000 0.00 0.00 0.00 2.92
42 43 5.303078 AGCAAAGTCGTCATATAGGTCTGAT 59.697 40.000 0.00 0.00 0.00 2.90
43 44 4.645136 AGCAAAGTCGTCATATAGGTCTGA 59.355 41.667 0.00 0.00 0.00 3.27
44 45 4.938080 AGCAAAGTCGTCATATAGGTCTG 58.062 43.478 0.00 0.00 0.00 3.51
45 46 6.062749 TCTAGCAAAGTCGTCATATAGGTCT 58.937 40.000 0.00 0.00 0.00 3.85
46 47 6.205076 TCTCTAGCAAAGTCGTCATATAGGTC 59.795 42.308 0.00 0.00 0.00 3.85
47 48 6.062749 TCTCTAGCAAAGTCGTCATATAGGT 58.937 40.000 0.00 0.00 0.00 3.08
48 49 6.561737 TCTCTAGCAAAGTCGTCATATAGG 57.438 41.667 0.00 0.00 0.00 2.57
49 50 6.526325 GCATCTCTAGCAAAGTCGTCATATAG 59.474 42.308 0.00 0.00 0.00 1.31
50 51 6.207614 AGCATCTCTAGCAAAGTCGTCATATA 59.792 38.462 0.00 0.00 0.00 0.86
51 52 5.010516 AGCATCTCTAGCAAAGTCGTCATAT 59.989 40.000 0.00 0.00 0.00 1.78
52 53 4.339530 AGCATCTCTAGCAAAGTCGTCATA 59.660 41.667 0.00 0.00 0.00 2.15
53 54 3.131933 AGCATCTCTAGCAAAGTCGTCAT 59.868 43.478 0.00 0.00 0.00 3.06
54 55 2.493675 AGCATCTCTAGCAAAGTCGTCA 59.506 45.455 0.00 0.00 0.00 4.35
55 56 3.112580 GAGCATCTCTAGCAAAGTCGTC 58.887 50.000 0.00 0.00 0.00 4.20
56 57 2.478709 CGAGCATCTCTAGCAAAGTCGT 60.479 50.000 0.00 0.00 0.00 4.34
57 58 2.115595 CGAGCATCTCTAGCAAAGTCG 58.884 52.381 0.00 0.00 0.00 4.18
58 59 2.159170 ACCGAGCATCTCTAGCAAAGTC 60.159 50.000 0.00 0.00 0.00 3.01
59 60 1.827969 ACCGAGCATCTCTAGCAAAGT 59.172 47.619 0.00 0.00 0.00 2.66
60 61 2.100584 AGACCGAGCATCTCTAGCAAAG 59.899 50.000 0.00 0.00 0.00 2.77
61 62 2.103373 AGACCGAGCATCTCTAGCAAA 58.897 47.619 0.00 0.00 0.00 3.68
62 63 1.769026 AGACCGAGCATCTCTAGCAA 58.231 50.000 0.00 0.00 0.00 3.91
63 64 1.769026 AAGACCGAGCATCTCTAGCA 58.231 50.000 0.00 0.00 0.00 3.49
64 65 2.863137 CAAAAGACCGAGCATCTCTAGC 59.137 50.000 0.00 0.00 0.00 3.42
65 66 4.377839 TCAAAAGACCGAGCATCTCTAG 57.622 45.455 0.00 0.00 0.00 2.43
66 67 4.686972 CATCAAAAGACCGAGCATCTCTA 58.313 43.478 0.00 0.00 0.00 2.43
67 68 3.529533 CATCAAAAGACCGAGCATCTCT 58.470 45.455 0.00 0.00 0.00 3.10
68 69 2.031437 GCATCAAAAGACCGAGCATCTC 59.969 50.000 0.00 0.00 0.00 2.75
69 70 2.012673 GCATCAAAAGACCGAGCATCT 58.987 47.619 0.00 0.00 0.00 2.90
70 71 1.739466 TGCATCAAAAGACCGAGCATC 59.261 47.619 0.00 0.00 0.00 3.91
71 72 1.741706 CTGCATCAAAAGACCGAGCAT 59.258 47.619 0.00 0.00 0.00 3.79
72 73 1.159285 CTGCATCAAAAGACCGAGCA 58.841 50.000 0.00 0.00 0.00 4.26
73 74 1.135859 CACTGCATCAAAAGACCGAGC 60.136 52.381 0.00 0.00 0.00 5.03
74 75 1.466167 CCACTGCATCAAAAGACCGAG 59.534 52.381 0.00 0.00 0.00 4.63
75 76 1.202758 ACCACTGCATCAAAAGACCGA 60.203 47.619 0.00 0.00 0.00 4.69
76 77 1.069022 CACCACTGCATCAAAAGACCG 60.069 52.381 0.00 0.00 0.00 4.79
77 78 1.270550 CCACCACTGCATCAAAAGACC 59.729 52.381 0.00 0.00 0.00 3.85
78 79 2.229792 TCCACCACTGCATCAAAAGAC 58.770 47.619 0.00 0.00 0.00 3.01
79 80 2.655090 TCCACCACTGCATCAAAAGA 57.345 45.000 0.00 0.00 0.00 2.52
80 81 3.581755 CATTCCACCACTGCATCAAAAG 58.418 45.455 0.00 0.00 0.00 2.27
81 82 2.288948 GCATTCCACCACTGCATCAAAA 60.289 45.455 0.00 0.00 35.96 2.44
82 83 1.273048 GCATTCCACCACTGCATCAAA 59.727 47.619 0.00 0.00 35.96 2.69
83 84 0.889994 GCATTCCACCACTGCATCAA 59.110 50.000 0.00 0.00 35.96 2.57
84 85 0.251253 TGCATTCCACCACTGCATCA 60.251 50.000 0.00 0.00 40.75 3.07
85 86 0.889994 TTGCATTCCACCACTGCATC 59.110 50.000 0.00 0.00 44.65 3.91
86 87 1.001181 GTTTGCATTCCACCACTGCAT 59.999 47.619 0.00 0.00 44.65 3.96
87 88 0.388659 GTTTGCATTCCACCACTGCA 59.611 50.000 0.00 0.00 43.69 4.41
88 89 0.664166 CGTTTGCATTCCACCACTGC 60.664 55.000 0.00 0.00 36.45 4.40
89 90 0.950836 TCGTTTGCATTCCACCACTG 59.049 50.000 0.00 0.00 0.00 3.66
90 91 1.909700 ATCGTTTGCATTCCACCACT 58.090 45.000 0.00 0.00 0.00 4.00
91 92 2.327568 CAATCGTTTGCATTCCACCAC 58.672 47.619 0.00 0.00 0.00 4.16
92 93 1.271934 CCAATCGTTTGCATTCCACCA 59.728 47.619 0.47 0.00 0.00 4.17
93 94 1.543802 TCCAATCGTTTGCATTCCACC 59.456 47.619 0.47 0.00 0.00 4.61
94 95 3.244976 CTTCCAATCGTTTGCATTCCAC 58.755 45.455 0.47 0.00 0.00 4.02
95 96 2.230992 CCTTCCAATCGTTTGCATTCCA 59.769 45.455 0.47 0.00 0.00 3.53
96 97 2.231235 ACCTTCCAATCGTTTGCATTCC 59.769 45.455 0.47 0.00 0.00 3.01
97 98 3.057596 TCACCTTCCAATCGTTTGCATTC 60.058 43.478 0.47 0.00 0.00 2.67
98 99 2.890311 TCACCTTCCAATCGTTTGCATT 59.110 40.909 0.47 0.00 0.00 3.56
99 100 2.513753 TCACCTTCCAATCGTTTGCAT 58.486 42.857 0.47 0.00 0.00 3.96
100 101 1.974265 TCACCTTCCAATCGTTTGCA 58.026 45.000 0.47 0.00 0.00 4.08
101 102 2.922335 GCTTCACCTTCCAATCGTTTGC 60.922 50.000 0.47 0.00 0.00 3.68
102 103 2.293122 TGCTTCACCTTCCAATCGTTTG 59.707 45.455 0.00 0.00 0.00 2.93
103 104 2.582052 TGCTTCACCTTCCAATCGTTT 58.418 42.857 0.00 0.00 0.00 3.60
104 105 2.270352 TGCTTCACCTTCCAATCGTT 57.730 45.000 0.00 0.00 0.00 3.85
105 106 2.489329 CAATGCTTCACCTTCCAATCGT 59.511 45.455 0.00 0.00 0.00 3.73
106 107 2.489329 ACAATGCTTCACCTTCCAATCG 59.511 45.455 0.00 0.00 0.00 3.34
107 108 4.943705 TCTACAATGCTTCACCTTCCAATC 59.056 41.667 0.00 0.00 0.00 2.67
108 109 4.922206 TCTACAATGCTTCACCTTCCAAT 58.078 39.130 0.00 0.00 0.00 3.16
109 110 4.365514 TCTACAATGCTTCACCTTCCAA 57.634 40.909 0.00 0.00 0.00 3.53
110 111 4.574674 ATCTACAATGCTTCACCTTCCA 57.425 40.909 0.00 0.00 0.00 3.53
111 112 4.096984 CCAATCTACAATGCTTCACCTTCC 59.903 45.833 0.00 0.00 0.00 3.46
112 113 4.439289 GCCAATCTACAATGCTTCACCTTC 60.439 45.833 0.00 0.00 0.00 3.46
113 114 3.445096 GCCAATCTACAATGCTTCACCTT 59.555 43.478 0.00 0.00 0.00 3.50
114 115 3.019564 GCCAATCTACAATGCTTCACCT 58.980 45.455 0.00 0.00 0.00 4.00
115 116 2.754552 TGCCAATCTACAATGCTTCACC 59.245 45.455 0.00 0.00 0.00 4.02
116 117 4.357142 CATGCCAATCTACAATGCTTCAC 58.643 43.478 0.00 0.00 0.00 3.18
117 118 3.382227 CCATGCCAATCTACAATGCTTCA 59.618 43.478 0.00 0.00 0.00 3.02
118 119 3.797865 GCCATGCCAATCTACAATGCTTC 60.798 47.826 0.00 0.00 0.00 3.86
119 120 2.101917 GCCATGCCAATCTACAATGCTT 59.898 45.455 0.00 0.00 0.00 3.91
120 121 1.684983 GCCATGCCAATCTACAATGCT 59.315 47.619 0.00 0.00 0.00 3.79
121 122 1.684983 AGCCATGCCAATCTACAATGC 59.315 47.619 0.00 0.00 0.00 3.56
122 123 4.023450 CACTAGCCATGCCAATCTACAATG 60.023 45.833 0.00 0.00 0.00 2.82
123 124 4.139786 CACTAGCCATGCCAATCTACAAT 58.860 43.478 0.00 0.00 0.00 2.71
124 125 3.544684 CACTAGCCATGCCAATCTACAA 58.455 45.455 0.00 0.00 0.00 2.41
125 126 2.158769 CCACTAGCCATGCCAATCTACA 60.159 50.000 0.00 0.00 0.00 2.74
126 127 2.498167 CCACTAGCCATGCCAATCTAC 58.502 52.381 0.00 0.00 0.00 2.59
127 128 1.421268 CCCACTAGCCATGCCAATCTA 59.579 52.381 0.00 0.00 0.00 1.98
128 129 0.184451 CCCACTAGCCATGCCAATCT 59.816 55.000 0.00 0.00 0.00 2.40
129 130 0.825010 CCCCACTAGCCATGCCAATC 60.825 60.000 0.00 0.00 0.00 2.67
130 131 1.231068 CCCCACTAGCCATGCCAAT 59.769 57.895 0.00 0.00 0.00 3.16
131 132 1.505151 TTCCCCACTAGCCATGCCAA 61.505 55.000 0.00 0.00 0.00 4.52
132 133 1.925285 CTTCCCCACTAGCCATGCCA 61.925 60.000 0.00 0.00 0.00 4.92
133 134 1.152881 CTTCCCCACTAGCCATGCC 60.153 63.158 0.00 0.00 0.00 4.40
134 135 0.464554 GACTTCCCCACTAGCCATGC 60.465 60.000 0.00 0.00 0.00 4.06
135 136 0.181350 GGACTTCCCCACTAGCCATG 59.819 60.000 0.00 0.00 0.00 3.66
136 137 0.253160 TGGACTTCCCCACTAGCCAT 60.253 55.000 0.00 0.00 34.29 4.40
137 138 0.909610 CTGGACTTCCCCACTAGCCA 60.910 60.000 0.00 0.00 34.29 4.75
138 139 1.627297 CCTGGACTTCCCCACTAGCC 61.627 65.000 0.00 0.00 34.29 3.93
139 140 1.627297 CCCTGGACTTCCCCACTAGC 61.627 65.000 0.00 0.00 34.29 3.42
140 141 0.252742 ACCCTGGACTTCCCCACTAG 60.253 60.000 0.00 0.00 34.29 2.57
141 142 0.546747 CACCCTGGACTTCCCCACTA 60.547 60.000 0.00 0.00 34.29 2.74
142 143 1.847968 CACCCTGGACTTCCCCACT 60.848 63.158 0.00 0.00 34.29 4.00
143 144 1.842381 CTCACCCTGGACTTCCCCAC 61.842 65.000 0.00 0.00 34.29 4.61
144 145 1.538876 CTCACCCTGGACTTCCCCA 60.539 63.158 0.00 0.00 34.29 4.96
145 146 2.972819 GCTCACCCTGGACTTCCCC 61.973 68.421 0.00 0.00 34.29 4.81
146 147 2.671682 GCTCACCCTGGACTTCCC 59.328 66.667 0.00 0.00 34.29 3.97
147 148 2.266055 CGCTCACCCTGGACTTCC 59.734 66.667 0.00 0.00 0.00 3.46
148 149 1.374758 CACGCTCACCCTGGACTTC 60.375 63.158 0.00 0.00 0.00 3.01
149 150 1.194781 ATCACGCTCACCCTGGACTT 61.195 55.000 0.00 0.00 0.00 3.01
150 151 1.194781 AATCACGCTCACCCTGGACT 61.195 55.000 0.00 0.00 0.00 3.85
151 152 1.021390 CAATCACGCTCACCCTGGAC 61.021 60.000 0.00 0.00 0.00 4.02
152 153 1.296392 CAATCACGCTCACCCTGGA 59.704 57.895 0.00 0.00 0.00 3.86
153 154 1.746615 CCAATCACGCTCACCCTGG 60.747 63.158 0.00 0.00 0.00 4.45
154 155 0.107508 ATCCAATCACGCTCACCCTG 60.108 55.000 0.00 0.00 0.00 4.45
155 156 0.179000 GATCCAATCACGCTCACCCT 59.821 55.000 0.00 0.00 0.00 4.34
156 157 0.107703 TGATCCAATCACGCTCACCC 60.108 55.000 0.00 0.00 33.59 4.61
157 158 3.458872 TGATCCAATCACGCTCACC 57.541 52.632 0.00 0.00 33.59 4.02
165 166 1.275666 ACGACCCAGTGATCCAATCA 58.724 50.000 0.00 0.00 36.84 2.57
166 167 2.403252 AACGACCCAGTGATCCAATC 57.597 50.000 0.00 0.00 0.00 2.67
167 168 2.879103 AAACGACCCAGTGATCCAAT 57.121 45.000 0.00 0.00 0.00 3.16
168 169 3.773418 TTAAACGACCCAGTGATCCAA 57.227 42.857 0.00 0.00 0.00 3.53
169 170 3.992943 ATTAAACGACCCAGTGATCCA 57.007 42.857 0.00 0.00 0.00 3.41
170 171 5.638596 AAAATTAAACGACCCAGTGATCC 57.361 39.130 0.00 0.00 0.00 3.36
171 172 6.362283 CACAAAAATTAAACGACCCAGTGATC 59.638 38.462 0.00 0.00 0.00 2.92
172 173 6.183360 ACACAAAAATTAAACGACCCAGTGAT 60.183 34.615 0.00 0.00 0.00 3.06
173 174 5.125739 ACACAAAAATTAAACGACCCAGTGA 59.874 36.000 0.00 0.00 0.00 3.41
174 175 5.344884 ACACAAAAATTAAACGACCCAGTG 58.655 37.500 0.00 0.00 0.00 3.66
175 176 5.585820 ACACAAAAATTAAACGACCCAGT 57.414 34.783 0.00 0.00 0.00 4.00
176 177 6.088883 GCATACACAAAAATTAAACGACCCAG 59.911 38.462 0.00 0.00 0.00 4.45
177 178 5.921408 GCATACACAAAAATTAAACGACCCA 59.079 36.000 0.00 0.00 0.00 4.51
178 179 6.153756 AGCATACACAAAAATTAAACGACCC 58.846 36.000 0.00 0.00 0.00 4.46
179 180 6.858993 TGAGCATACACAAAAATTAAACGACC 59.141 34.615 0.00 0.00 0.00 4.79
180 181 7.407871 CGTGAGCATACACAAAAATTAAACGAC 60.408 37.037 0.00 0.00 40.34 4.34
181 182 6.575572 CGTGAGCATACACAAAAATTAAACGA 59.424 34.615 0.00 0.00 40.34 3.85
182 183 6.358558 ACGTGAGCATACACAAAAATTAAACG 59.641 34.615 0.00 0.00 40.34 3.60
183 184 7.490055 CACGTGAGCATACACAAAAATTAAAC 58.510 34.615 10.90 0.00 40.34 2.01
184 185 6.143118 GCACGTGAGCATACACAAAAATTAAA 59.857 34.615 22.23 0.00 40.34 1.52
185 186 5.627367 GCACGTGAGCATACACAAAAATTAA 59.373 36.000 22.23 0.00 40.34 1.40
186 187 5.150683 GCACGTGAGCATACACAAAAATTA 58.849 37.500 22.23 0.00 40.34 1.40
187 188 3.980775 GCACGTGAGCATACACAAAAATT 59.019 39.130 22.23 0.00 40.34 1.82
188 189 3.564511 GCACGTGAGCATACACAAAAAT 58.435 40.909 22.23 0.00 40.34 1.82
189 190 2.287308 GGCACGTGAGCATACACAAAAA 60.287 45.455 22.23 0.00 40.34 1.94
190 191 1.265635 GGCACGTGAGCATACACAAAA 59.734 47.619 22.23 0.00 40.34 2.44
191 192 0.871722 GGCACGTGAGCATACACAAA 59.128 50.000 22.23 0.00 40.34 2.83
192 193 0.034756 AGGCACGTGAGCATACACAA 59.965 50.000 22.23 0.00 40.34 3.33
193 194 0.389817 GAGGCACGTGAGCATACACA 60.390 55.000 22.23 0.00 40.34 3.72
194 195 1.413767 CGAGGCACGTGAGCATACAC 61.414 60.000 22.23 0.00 37.22 2.90
195 196 1.153842 CGAGGCACGTGAGCATACA 60.154 57.895 22.23 0.00 37.22 2.29
196 197 2.517450 GCGAGGCACGTGAGCATAC 61.517 63.158 22.23 0.00 44.60 2.39
197 198 2.202743 GCGAGGCACGTGAGCATA 60.203 61.111 22.23 0.00 44.60 3.14
198 199 3.670637 ATGCGAGGCACGTGAGCAT 62.671 57.895 24.79 24.79 43.04 3.79
199 200 4.377708 ATGCGAGGCACGTGAGCA 62.378 61.111 22.23 22.80 43.04 4.26
200 201 3.857854 CATGCGAGGCACGTGAGC 61.858 66.667 22.23 17.99 43.04 4.26
201 202 0.528466 ATACATGCGAGGCACGTGAG 60.528 55.000 22.23 8.06 43.04 3.51
202 203 0.741915 TATACATGCGAGGCACGTGA 59.258 50.000 22.23 0.00 43.04 4.35
203 204 1.566404 TTATACATGCGAGGCACGTG 58.434 50.000 12.28 12.28 43.04 4.49
204 205 2.526304 ATTATACATGCGAGGCACGT 57.474 45.000 6.15 0.00 43.04 4.49
205 206 4.234574 TCTAATTATACATGCGAGGCACG 58.765 43.478 0.00 0.00 43.04 5.34
206 207 5.230942 ACTCTAATTATACATGCGAGGCAC 58.769 41.667 0.00 0.00 43.04 5.01
207 208 5.468540 ACTCTAATTATACATGCGAGGCA 57.531 39.130 0.00 0.00 44.86 4.75
208 209 6.787085 AAACTCTAATTATACATGCGAGGC 57.213 37.500 0.00 0.00 0.00 4.70
210 211 9.779237 CGTAAAAACTCTAATTATACATGCGAG 57.221 33.333 0.00 0.00 0.00 5.03
211 212 8.757789 CCGTAAAAACTCTAATTATACATGCGA 58.242 33.333 0.00 0.00 0.00 5.10
212 213 8.545420 ACCGTAAAAACTCTAATTATACATGCG 58.455 33.333 0.00 0.00 0.00 4.73
222 223 9.755804 GGTATAAGCTACCGTAAAAACTCTAAT 57.244 33.333 0.00 0.00 0.00 1.73
236 237 2.229302 CCTCTCAGCGGTATAAGCTACC 59.771 54.545 3.94 0.00 44.06 3.18
237 238 2.229302 CCCTCTCAGCGGTATAAGCTAC 59.771 54.545 3.94 0.00 44.06 3.58
238 239 2.515854 CCCTCTCAGCGGTATAAGCTA 58.484 52.381 3.94 0.00 44.06 3.32
240 241 0.318762 CCCCTCTCAGCGGTATAAGC 59.681 60.000 0.00 0.00 0.00 3.09
241 242 0.969894 CCCCCTCTCAGCGGTATAAG 59.030 60.000 0.00 0.00 0.00 1.73
242 243 0.263765 ACCCCCTCTCAGCGGTATAA 59.736 55.000 0.00 0.00 0.00 0.98
243 244 0.469331 CACCCCCTCTCAGCGGTATA 60.469 60.000 0.00 0.00 0.00 1.47
244 245 1.762460 CACCCCCTCTCAGCGGTAT 60.762 63.158 0.00 0.00 0.00 2.73
245 246 2.363795 CACCCCCTCTCAGCGGTA 60.364 66.667 0.00 0.00 0.00 4.02
246 247 4.316823 TCACCCCCTCTCAGCGGT 62.317 66.667 0.00 0.00 0.00 5.68
247 248 3.465403 CTCACCCCCTCTCAGCGG 61.465 72.222 0.00 0.00 0.00 5.52
248 249 4.154347 GCTCACCCCCTCTCAGCG 62.154 72.222 0.00 0.00 0.00 5.18
249 250 3.005539 TGCTCACCCCCTCTCAGC 61.006 66.667 0.00 0.00 0.00 4.26
250 251 0.324738 TACTGCTCACCCCCTCTCAG 60.325 60.000 0.00 0.00 0.00 3.35
251 252 0.339859 ATACTGCTCACCCCCTCTCA 59.660 55.000 0.00 0.00 0.00 3.27
252 253 0.755686 CATACTGCTCACCCCCTCTC 59.244 60.000 0.00 0.00 0.00 3.20
253 254 0.339859 TCATACTGCTCACCCCCTCT 59.660 55.000 0.00 0.00 0.00 3.69
254 255 0.755686 CTCATACTGCTCACCCCCTC 59.244 60.000 0.00 0.00 0.00 4.30
255 256 0.043334 ACTCATACTGCTCACCCCCT 59.957 55.000 0.00 0.00 0.00 4.79
256 257 1.789523 TACTCATACTGCTCACCCCC 58.210 55.000 0.00 0.00 0.00 5.40
257 258 3.906720 TTTACTCATACTGCTCACCCC 57.093 47.619 0.00 0.00 0.00 4.95
258 259 5.525378 CAGATTTTACTCATACTGCTCACCC 59.475 44.000 0.00 0.00 0.00 4.61
259 260 5.525378 CCAGATTTTACTCATACTGCTCACC 59.475 44.000 0.00 0.00 0.00 4.02
260 261 5.007136 GCCAGATTTTACTCATACTGCTCAC 59.993 44.000 0.00 0.00 0.00 3.51
261 262 5.118990 GCCAGATTTTACTCATACTGCTCA 58.881 41.667 0.00 0.00 0.00 4.26
262 263 4.513318 GGCCAGATTTTACTCATACTGCTC 59.487 45.833 0.00 0.00 0.00 4.26
263 264 4.455606 GGCCAGATTTTACTCATACTGCT 58.544 43.478 0.00 0.00 0.00 4.24
264 265 3.248602 CGGCCAGATTTTACTCATACTGC 59.751 47.826 2.24 0.00 0.00 4.40
265 266 4.442706 ACGGCCAGATTTTACTCATACTG 58.557 43.478 2.24 0.00 0.00 2.74
266 267 4.755266 ACGGCCAGATTTTACTCATACT 57.245 40.909 2.24 0.00 0.00 2.12
267 268 6.913873 TTAACGGCCAGATTTTACTCATAC 57.086 37.500 2.24 0.00 0.00 2.39
268 269 8.514330 AAATTAACGGCCAGATTTTACTCATA 57.486 30.769 2.24 0.00 0.00 2.15
269 270 7.404671 AAATTAACGGCCAGATTTTACTCAT 57.595 32.000 2.24 0.00 0.00 2.90
270 271 6.827586 AAATTAACGGCCAGATTTTACTCA 57.172 33.333 2.24 0.00 0.00 3.41
271 272 7.810759 TCAAAAATTAACGGCCAGATTTTACTC 59.189 33.333 2.24 0.00 32.94 2.59
272 273 7.662897 TCAAAAATTAACGGCCAGATTTTACT 58.337 30.769 2.24 0.00 32.94 2.24
273 274 7.876896 TCAAAAATTAACGGCCAGATTTTAC 57.123 32.000 2.24 0.00 32.94 2.01
274 275 7.547370 CCATCAAAAATTAACGGCCAGATTTTA 59.453 33.333 2.24 0.00 32.94 1.52
275 276 6.371271 CCATCAAAAATTAACGGCCAGATTTT 59.629 34.615 2.24 6.55 34.24 1.82
276 277 5.874261 CCATCAAAAATTAACGGCCAGATTT 59.126 36.000 2.24 0.00 0.00 2.17
277 278 5.418676 CCATCAAAAATTAACGGCCAGATT 58.581 37.500 2.24 0.00 0.00 2.40
278 279 4.680440 GCCATCAAAAATTAACGGCCAGAT 60.680 41.667 2.24 0.00 31.76 2.90
279 280 3.367910 GCCATCAAAAATTAACGGCCAGA 60.368 43.478 2.24 0.00 31.76 3.86
280 281 2.929398 GCCATCAAAAATTAACGGCCAG 59.071 45.455 2.24 0.00 31.76 4.85
281 282 2.300152 TGCCATCAAAAATTAACGGCCA 59.700 40.909 2.24 0.00 37.25 5.36
282 283 2.966050 TGCCATCAAAAATTAACGGCC 58.034 42.857 0.00 0.00 37.25 6.13
283 284 4.391523 ACAATGCCATCAAAAATTAACGGC 59.608 37.500 0.00 0.00 38.56 5.68
284 285 6.146837 TCAACAATGCCATCAAAAATTAACGG 59.853 34.615 0.00 0.00 0.00 4.44
285 286 7.008859 GTCAACAATGCCATCAAAAATTAACG 58.991 34.615 0.00 0.00 0.00 3.18
286 287 8.086851 AGTCAACAATGCCATCAAAAATTAAC 57.913 30.769 0.00 0.00 0.00 2.01
287 288 8.674263 AAGTCAACAATGCCATCAAAAATTAA 57.326 26.923 0.00 0.00 0.00 1.40
288 289 8.674263 AAAGTCAACAATGCCATCAAAAATTA 57.326 26.923 0.00 0.00 0.00 1.40
289 290 7.571080 AAAGTCAACAATGCCATCAAAAATT 57.429 28.000 0.00 0.00 0.00 1.82
290 291 7.571080 AAAAGTCAACAATGCCATCAAAAAT 57.429 28.000 0.00 0.00 0.00 1.82
291 292 6.998968 AAAAGTCAACAATGCCATCAAAAA 57.001 29.167 0.00 0.00 0.00 1.94
292 293 6.596888 TGAAAAAGTCAACAATGCCATCAAAA 59.403 30.769 0.00 0.00 31.51 2.44
293 294 6.036953 GTGAAAAAGTCAACAATGCCATCAAA 59.963 34.615 0.00 0.00 38.23 2.69
294 295 5.523188 GTGAAAAAGTCAACAATGCCATCAA 59.477 36.000 0.00 0.00 38.23 2.57
295 296 5.049167 GTGAAAAAGTCAACAATGCCATCA 58.951 37.500 0.00 0.00 38.23 3.07
296 297 4.448732 GGTGAAAAAGTCAACAATGCCATC 59.551 41.667 0.00 0.00 44.12 3.51
297 298 4.379652 GGTGAAAAAGTCAACAATGCCAT 58.620 39.130 0.00 0.00 44.12 4.40
298 299 3.791245 GGTGAAAAAGTCAACAATGCCA 58.209 40.909 0.00 0.00 44.12 4.92
305 306 6.859017 TCCAGTTTTAGGTGAAAAAGTCAAC 58.141 36.000 0.00 0.00 45.16 3.18
306 307 7.469537 TTCCAGTTTTAGGTGAAAAAGTCAA 57.530 32.000 0.00 0.00 38.75 3.18
307 308 7.654022 ATTCCAGTTTTAGGTGAAAAAGTCA 57.346 32.000 0.00 0.00 38.75 3.41
308 309 8.942338 AAATTCCAGTTTTAGGTGAAAAAGTC 57.058 30.769 0.00 0.00 38.75 3.01
309 310 7.985184 GGAAATTCCAGTTTTAGGTGAAAAAGT 59.015 33.333 7.23 0.00 36.25 2.66
310 311 7.984617 TGGAAATTCCAGTTTTAGGTGAAAAAG 59.015 33.333 11.23 0.00 42.67 2.27
311 312 7.852263 TGGAAATTCCAGTTTTAGGTGAAAAA 58.148 30.769 11.23 0.00 42.67 1.94
312 313 7.425224 TGGAAATTCCAGTTTTAGGTGAAAA 57.575 32.000 11.23 0.00 42.67 2.29
326 327 0.897863 CCCCGCTTGTGGAAATTCCA 60.898 55.000 11.23 11.23 45.98 3.53
327 328 1.890174 CCCCGCTTGTGGAAATTCC 59.110 57.895 4.79 4.79 36.96 3.01
328 329 1.215382 GCCCCGCTTGTGGAAATTC 59.785 57.895 1.22 0.00 0.00 2.17
329 330 1.532794 TGCCCCGCTTGTGGAAATT 60.533 52.632 1.22 0.00 0.00 1.82
330 331 2.117206 TGCCCCGCTTGTGGAAAT 59.883 55.556 1.22 0.00 0.00 2.17
331 332 2.909965 GTGCCCCGCTTGTGGAAA 60.910 61.111 1.22 0.00 0.00 3.13
332 333 4.196778 TGTGCCCCGCTTGTGGAA 62.197 61.111 1.22 0.00 0.00 3.53
333 334 4.947147 GTGTGCCCCGCTTGTGGA 62.947 66.667 1.22 0.00 0.00 4.02
336 337 3.876589 CTACGTGTGCCCCGCTTGT 62.877 63.158 0.00 0.00 0.00 3.16
337 338 3.118454 CTACGTGTGCCCCGCTTG 61.118 66.667 0.00 0.00 0.00 4.01
348 349 3.889227 CCACCACATGGCTACGTG 58.111 61.111 0.00 0.00 43.24 4.49
369 370 3.777925 CCCAACGAACGAGCGCAG 61.778 66.667 11.47 5.62 33.86 5.18
370 371 4.595538 ACCCAACGAACGAGCGCA 62.596 61.111 11.47 0.00 33.86 6.09
371 372 4.072088 CACCCAACGAACGAGCGC 62.072 66.667 0.00 0.00 33.86 5.92
372 373 3.411351 CCACCCAACGAACGAGCG 61.411 66.667 0.14 0.00 37.29 5.03
373 374 3.723348 GCCACCCAACGAACGAGC 61.723 66.667 0.14 0.00 0.00 5.03
374 375 3.411351 CGCCACCCAACGAACGAG 61.411 66.667 0.14 0.00 0.00 4.18
375 376 3.736732 AACGCCACCCAACGAACGA 62.737 57.895 0.14 0.00 0.00 3.85
376 377 3.273834 AACGCCACCCAACGAACG 61.274 61.111 0.00 0.00 0.00 3.95
377 378 1.512156 ATCAACGCCACCCAACGAAC 61.512 55.000 0.00 0.00 0.00 3.95
378 379 0.035036 TATCAACGCCACCCAACGAA 59.965 50.000 0.00 0.00 0.00 3.85
379 380 0.671163 GTATCAACGCCACCCAACGA 60.671 55.000 0.00 0.00 0.00 3.85
380 381 1.791662 GTATCAACGCCACCCAACG 59.208 57.895 0.00 0.00 0.00 4.10
398 399 2.817423 GCAGATGAAGGCCGCTTCG 61.817 63.158 0.00 0.49 36.21 3.79
400 401 1.303561 TTGCAGATGAAGGCCGCTT 60.304 52.632 0.00 0.00 0.00 4.68
401 402 2.042831 GTTGCAGATGAAGGCCGCT 61.043 57.895 0.00 0.00 0.00 5.52
413 414 0.825010 ACTTGCCTTCCAGGTTGCAG 60.825 55.000 0.00 0.51 37.80 4.41
414 415 0.396974 AACTTGCCTTCCAGGTTGCA 60.397 50.000 0.00 0.00 41.58 4.08
415 416 0.752658 AAACTTGCCTTCCAGGTTGC 59.247 50.000 0.00 0.00 42.22 4.17
416 417 2.031120 TGAAACTTGCCTTCCAGGTTG 58.969 47.619 0.00 0.00 42.22 3.77
417 418 2.430694 GTTGAAACTTGCCTTCCAGGTT 59.569 45.455 0.00 0.00 44.59 3.50
418 419 2.031870 GTTGAAACTTGCCTTCCAGGT 58.968 47.619 0.00 0.00 37.80 4.00
420 421 2.035066 CAGGTTGAAACTTGCCTTCCAG 59.965 50.000 0.00 0.00 0.00 3.86
463 470 3.372954 CGATTGATTACTCCAGTCCGTC 58.627 50.000 0.00 0.00 0.00 4.79
509 516 8.746530 TCAGATATATATACGAACCCAAAGTCC 58.253 37.037 0.00 0.00 0.00 3.85
528 536 3.639094 CGGGAGAACCTGAACTCAGATAT 59.361 47.826 8.33 0.00 46.59 1.63
529 537 3.024547 CGGGAGAACCTGAACTCAGATA 58.975 50.000 8.33 0.00 46.59 1.98
530 538 1.827969 CGGGAGAACCTGAACTCAGAT 59.172 52.381 8.33 0.00 46.59 2.90
531 539 1.257743 CGGGAGAACCTGAACTCAGA 58.742 55.000 8.33 0.00 46.59 3.27
551 559 2.348660 CGGTCGGTGTTATTTAGCCAA 58.651 47.619 0.00 0.00 0.00 4.52
617 628 1.092345 GTGAAGAAGATGGGCCTCGC 61.092 60.000 4.53 0.00 0.00 5.03
623 634 3.165058 TCGATTCGTGAAGAAGATGGG 57.835 47.619 5.89 0.00 42.92 4.00
624 635 4.210120 GGATTCGATTCGTGAAGAAGATGG 59.790 45.833 5.89 0.00 42.92 3.51
654 665 1.983972 AAAACTGACGCTAGCTCTCG 58.016 50.000 13.93 0.00 0.00 4.04
674 685 4.836175 TGTAGTGTAGAATCACCAAGTGGA 59.164 41.667 3.83 0.00 38.91 4.02
676 687 4.621460 CGTGTAGTGTAGAATCACCAAGTG 59.379 45.833 0.00 0.00 38.91 3.16
733 744 0.532862 GCCGCTAGCTATTTCCAGCA 60.533 55.000 13.93 0.00 44.35 4.41
776 787 2.600173 CTTCCTTGGGCCGGCAAA 60.600 61.111 30.85 20.68 0.00 3.68
897 928 0.679640 TTTATGGAGGTTGCGGCCAG 60.680 55.000 2.24 0.00 34.74 4.85
898 929 0.033601 ATTTATGGAGGTTGCGGCCA 60.034 50.000 2.24 0.00 35.91 5.36
899 930 1.607148 GTATTTATGGAGGTTGCGGCC 59.393 52.381 0.00 0.00 0.00 6.13
900 931 1.607148 GGTATTTATGGAGGTTGCGGC 59.393 52.381 0.00 0.00 0.00 6.53
941 972 2.485426 GGTGTGCGTGAGTAGTGTACTA 59.515 50.000 0.00 0.00 39.59 1.82
942 973 1.268899 GGTGTGCGTGAGTAGTGTACT 59.731 52.381 0.00 0.00 42.86 2.73
989 2857 1.158484 CGAGGCCATCATGCACAGAG 61.158 60.000 5.01 0.00 0.00 3.35
1123 2991 2.104530 GTAGAGGGCCGAGAACGC 59.895 66.667 0.00 0.00 38.29 4.84
1124 2992 2.783288 GGGTAGAGGGCCGAGAACG 61.783 68.421 0.00 0.00 39.43 3.95
1125 2993 2.783288 CGGGTAGAGGGCCGAGAAC 61.783 68.421 0.00 0.00 0.00 3.01
1126 2994 2.441532 CGGGTAGAGGGCCGAGAA 60.442 66.667 0.00 0.00 0.00 2.87
1127 2995 4.517934 CCGGGTAGAGGGCCGAGA 62.518 72.222 0.00 0.00 0.00 4.04
1160 3031 2.427245 ATCTCCACCTTCTCCGCCG 61.427 63.158 0.00 0.00 0.00 6.46
1169 3052 1.530771 GCCATGAGCATCTCCACCT 59.469 57.895 0.00 0.00 42.97 4.00
1274 3157 0.038709 TACAAAACCTTGCATGCGGC 60.039 50.000 14.09 0.00 45.13 6.53
1275 3158 1.539388 TCTACAAAACCTTGCATGCGG 59.461 47.619 14.09 11.74 35.84 5.69
1276 3159 2.031245 TGTCTACAAAACCTTGCATGCG 60.031 45.455 14.09 0.76 35.84 4.73
1277 3160 3.308530 GTGTCTACAAAACCTTGCATGC 58.691 45.455 11.82 11.82 35.84 4.06
1278 3161 3.003275 ACGTGTCTACAAAACCTTGCATG 59.997 43.478 0.00 0.00 35.84 4.06
1279 3162 3.211045 ACGTGTCTACAAAACCTTGCAT 58.789 40.909 0.00 0.00 35.84 3.96
1322 3209 3.197983 GCCTATGGACTCACTAAACCAGT 59.802 47.826 0.00 0.00 38.32 4.00
1323 3210 3.432326 GGCCTATGGACTCACTAAACCAG 60.432 52.174 0.00 0.00 35.84 4.00
1324 3211 2.504175 GGCCTATGGACTCACTAAACCA 59.496 50.000 0.00 0.00 36.83 3.67
1398 3285 7.215085 GTCTTACCTGTACAAGAAAGAAAGGA 58.785 38.462 12.50 0.00 32.67 3.36
1420 3341 1.878656 GCGTGCACCACTCTAGGTCT 61.879 60.000 12.15 0.00 40.77 3.85
1440 3361 2.033151 AGCGAGAAAACACGTTACAAGC 60.033 45.455 0.00 0.00 0.00 4.01
1474 3398 5.121298 TGAGAAAGAATCACAGCTCGAATTG 59.879 40.000 0.00 0.00 0.00 2.32
1496 3420 5.049680 GCTCGAGTAAGTTCAAACCAATTGA 60.050 40.000 15.13 0.00 46.22 2.57
1502 3426 3.391049 ACAGCTCGAGTAAGTTCAAACC 58.609 45.455 15.13 0.00 0.00 3.27
1516 3440 1.008875 TTGCGCAACTAGACAGCTCG 61.009 55.000 21.02 0.00 0.00 5.03
1551 3765 3.243068 GCACGAGGTGTTCTCAAACATTT 60.243 43.478 0.00 0.00 46.58 2.32
1676 3983 9.712305 CACATATGGTAGCTAGCTATAAGTTTT 57.288 33.333 26.59 10.61 0.00 2.43
1695 4002 9.433153 AGATACATAAGTCAATGAGCACATATG 57.567 33.333 0.00 0.00 35.50 1.78
1708 4015 9.679661 TGGAGCATTAAAAAGATACATAAGTCA 57.320 29.630 0.00 0.00 0.00 3.41
1726 4033 7.422465 TCTTATTGGCTTAAAATGGAGCATT 57.578 32.000 0.00 0.00 40.63 3.56
1742 4049 8.485976 TTTTGACAAAAGGTGTTTCTTATTGG 57.514 30.769 9.30 0.00 41.96 3.16
1765 4072 4.820173 ACGCCAGTAGCTAGTTTTCTTTTT 59.180 37.500 0.00 0.00 40.39 1.94
1770 4077 2.159693 GCAACGCCAGTAGCTAGTTTTC 60.160 50.000 0.00 0.00 40.39 2.29
1774 4081 0.108615 CTGCAACGCCAGTAGCTAGT 60.109 55.000 0.00 0.00 40.39 2.57
1784 4091 2.126346 GTGGAATGCTGCAACGCC 60.126 61.111 6.36 9.09 0.00 5.68
1811 4119 6.848451 TGAGAAACACCTTTACTTTTCACAC 58.152 36.000 0.00 0.00 31.57 3.82
1812 4120 7.309920 GTTGAGAAACACCTTTACTTTTCACA 58.690 34.615 0.00 0.00 31.57 3.58
1843 4151 3.112709 GCGTGCCTTCGGTGTCTC 61.113 66.667 0.00 0.00 0.00 3.36
1861 4169 2.436115 CGAAAGTTCCGGGAGCCC 60.436 66.667 7.32 0.00 0.00 5.19
1893 4205 2.660258 CTACCATGCAGCCGGGGTAC 62.660 65.000 2.18 0.00 34.88 3.34
1909 4222 4.686091 GGGTCGTTTGTTACCACTTACTAC 59.314 45.833 0.00 0.00 37.51 2.73
1910 4223 4.343526 TGGGTCGTTTGTTACCACTTACTA 59.656 41.667 0.00 0.00 37.51 1.82
1911 4224 3.134442 TGGGTCGTTTGTTACCACTTACT 59.866 43.478 0.00 0.00 37.51 2.24
1974 4299 1.982395 TGAAGACGGCATCGGTCCT 60.982 57.895 0.00 0.00 41.39 3.85
2063 4388 0.246757 CAAACATGACGTCGCGCTAC 60.247 55.000 11.62 3.22 0.00 3.58
2067 4392 1.225475 GAGCAAACATGACGTCGCG 60.225 57.895 11.62 0.00 0.00 5.87
2072 4397 2.480555 GGGCGAGCAAACATGACG 59.519 61.111 0.00 0.00 0.00 4.35
2093 4418 0.814457 AAGTCAGCTAGTCTCGCAGG 59.186 55.000 0.00 0.00 0.00 4.85
2126 4451 6.381420 TGTCAAAATTCAAAGGGAAGTGGTAA 59.619 34.615 0.00 0.00 39.30 2.85
2161 4486 0.170561 GAGAGAAGAACACGGCGCTA 59.829 55.000 6.90 0.00 0.00 4.26
2167 4492 4.253685 AGAGAGAGAGAGAGAAGAACACG 58.746 47.826 0.00 0.00 0.00 4.49
2179 4504 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2180 4505 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2181 4506 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2182 4507 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2183 4508 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2184 4509 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2185 4510 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2186 4511 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2187 4512 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2188 4513 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2189 4514 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2190 4515 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2191 4516 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2192 4517 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2193 4518 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2194 4519 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2195 4520 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2196 4521 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2197 4522 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2198 4523 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2199 4524 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2200 4525 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2201 4526 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2202 4527 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2203 4528 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2204 4529 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2205 4530 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2206 4531 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2207 4532 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
2208 4533 5.452078 GAGAGAGAGAGAGAGAGAGAGAG 57.548 52.174 0.00 0.00 0.00 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.