Multiple sequence alignment - TraesCS5A01G300400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G300400 chr5A 100.000 5304 0 0 1 5304 509658675 509653372 0.000000e+00 9795.0
1 TraesCS5A01G300400 chr5A 79.251 694 86 33 3684 4344 599800237 599799569 1.060000e-116 431.0
2 TraesCS5A01G300400 chr5A 85.279 197 25 3 3433 3627 599800452 599800258 3.240000e-47 200.0
3 TraesCS5A01G300400 chr5D 95.110 1411 53 13 3074 4476 404494911 404496313 0.000000e+00 2209.0
4 TraesCS5A01G300400 chr5D 85.592 1513 124 55 1 1480 404492044 404493495 0.000000e+00 1500.0
5 TraesCS5A01G300400 chr5D 91.315 852 52 9 4471 5304 404496700 404497547 0.000000e+00 1144.0
6 TraesCS5A01G300400 chr5D 89.368 696 42 15 1721 2410 404493579 404494248 0.000000e+00 846.0
7 TraesCS5A01G300400 chr5D 90.402 448 31 6 2400 2842 404494271 404494711 3.560000e-161 579.0
8 TraesCS5A01G300400 chr5D 86.000 250 31 4 606 853 404492503 404492750 1.130000e-66 265.0
9 TraesCS5A01G300400 chr5D 97.727 88 2 0 2863 2950 475843403 475843316 9.200000e-33 152.0
10 TraesCS5A01G300400 chr5D 90.826 109 9 1 2848 2956 351004112 351004219 1.540000e-30 145.0
11 TraesCS5A01G300400 chr5D 93.827 81 4 1 597 676 394292738 394292818 2.590000e-23 121.0
12 TraesCS5A01G300400 chr5D 94.737 76 3 1 1618 1692 404493519 404493594 3.360000e-22 117.0
13 TraesCS5A01G300400 chr5B 93.976 1411 69 13 3074 4476 485905152 485906554 0.000000e+00 2121.0
14 TraesCS5A01G300400 chr5B 90.994 855 52 9 4471 5304 485906940 485907790 0.000000e+00 1129.0
15 TraesCS5A01G300400 chr5B 89.886 702 51 13 1718 2407 485903598 485904291 0.000000e+00 885.0
16 TraesCS5A01G300400 chr5B 89.983 589 37 12 882 1459 485902924 485903501 0.000000e+00 741.0
17 TraesCS5A01G300400 chr5B 90.058 513 36 8 4567 5073 629938943 629938440 0.000000e+00 651.0
18 TraesCS5A01G300400 chr5B 90.758 422 9 7 1 413 485902164 485902564 2.170000e-148 536.0
19 TraesCS5A01G300400 chr5B 89.277 401 29 5 2472 2866 485904552 485904944 1.720000e-134 490.0
20 TraesCS5A01G300400 chr5B 81.150 313 32 13 3662 3957 589117749 589117447 5.340000e-55 226.0
21 TraesCS5A01G300400 chr5B 82.609 207 15 17 2215 2410 485904285 485904481 4.250000e-36 163.0
22 TraesCS5A01G300400 chr5B 96.053 76 2 1 1618 1692 485903542 485903617 7.210000e-24 122.0
23 TraesCS5A01G300400 chr5B 81.667 120 19 3 736 854 522942310 522942427 4.370000e-16 97.1
24 TraesCS5A01G300400 chr2B 87.713 586 41 11 4518 5083 787323483 787324057 0.000000e+00 654.0
25 TraesCS5A01G300400 chr2B 81.389 720 76 22 3336 4037 10773362 10774041 7.820000e-148 534.0
26 TraesCS5A01G300400 chr2B 91.429 175 15 0 3416 3590 10802819 10802645 1.910000e-59 241.0
27 TraesCS5A01G300400 chr2B 90.071 141 14 0 3141 3281 10772974 10773114 3.260000e-42 183.0
28 TraesCS5A01G300400 chr2B 82.915 199 15 8 3662 3849 10796896 10796706 1.530000e-35 161.0
29 TraesCS5A01G300400 chr2B 88.889 81 8 1 597 676 706027064 706026984 1.220000e-16 99.0
30 TraesCS5A01G300400 chr2B 82.075 106 14 3 604 705 39208229 39208125 9.460000e-13 86.1
31 TraesCS5A01G300400 chr2A 82.732 527 70 14 3962 4474 13037163 13036644 2.910000e-122 449.0
32 TraesCS5A01G300400 chr2A 78.571 378 44 16 3457 3822 659739418 659739770 1.160000e-51 215.0
33 TraesCS5A01G300400 chr2A 98.837 86 1 0 2865 2950 196359581 196359666 2.560000e-33 154.0
34 TraesCS5A01G300400 chr2A 94.737 95 5 0 2864 2958 127212320 127212226 1.190000e-31 148.0
35 TraesCS5A01G300400 chr2A 92.045 88 7 0 3664 3751 518994 519081 2.010000e-24 124.0
36 TraesCS5A01G300400 chr2A 82.787 122 19 2 734 854 735388497 735388617 2.020000e-19 108.0
37 TraesCS5A01G300400 chr2A 100.000 29 0 0 1565 1593 608790649 608790677 3.000000e-03 54.7
38 TraesCS5A01G300400 chr2D 82.849 344 34 14 3413 3751 530924 531247 8.690000e-73 285.0
39 TraesCS5A01G300400 chr2D 80.000 180 28 7 422 598 138293663 138293837 5.580000e-25 126.0
40 TraesCS5A01G300400 chr2D 84.426 122 17 2 734 854 602739560 602739440 9.330000e-23 119.0
41 TraesCS5A01G300400 chr2D 100.000 29 0 0 1565 1593 315860390 315860362 3.000000e-03 54.7
42 TraesCS5A01G300400 chr1D 79.101 378 42 17 3457 3822 32537460 32537812 5.340000e-55 226.0
43 TraesCS5A01G300400 chr1D 79.661 177 23 12 435 602 432334589 432334761 1.210000e-21 115.0
44 TraesCS5A01G300400 chr1D 86.139 101 14 0 602 702 216725994 216726094 5.620000e-20 110.0
45 TraesCS5A01G300400 chr1D 84.466 103 16 0 602 704 486331837 486331735 9.400000e-18 102.0
46 TraesCS5A01G300400 chr3A 78.836 378 43 16 3457 3822 19636734 19637086 2.490000e-53 220.0
47 TraesCS5A01G300400 chr3A 100.000 86 0 0 2865 2950 707615389 707615474 5.500000e-35 159.0
48 TraesCS5A01G300400 chr3A 92.079 101 8 0 2859 2959 639017725 639017625 5.540000e-30 143.0
49 TraesCS5A01G300400 chr3A 79.532 171 28 4 435 601 530941976 530941809 1.210000e-21 115.0
50 TraesCS5A01G300400 chr4D 98.824 85 1 0 2866 2950 14928756 14928672 9.200000e-33 152.0
51 TraesCS5A01G300400 chr4D 82.667 150 20 6 435 580 29317169 29317022 1.550000e-25 128.0
52 TraesCS5A01G300400 chr4D 80.992 121 23 0 734 854 437026889 437027009 4.370000e-16 97.1
53 TraesCS5A01G300400 chr6D 96.667 90 3 0 2861 2950 385916935 385917024 3.310000e-32 150.0
54 TraesCS5A01G300400 chr6D 96.667 90 3 0 2864 2953 441898383 441898294 3.310000e-32 150.0
55 TraesCS5A01G300400 chr6D 82.692 104 18 0 602 705 287025267 287025370 5.660000e-15 93.5
56 TraesCS5A01G300400 chr7D 81.065 169 28 2 433 600 537285587 537285752 1.200000e-26 132.0
57 TraesCS5A01G300400 chr7B 84.058 138 16 5 468 602 439251923 439252057 1.550000e-25 128.0
58 TraesCS5A01G300400 chr7B 82.524 103 18 0 602 704 232261133 232261235 2.030000e-14 91.6
59 TraesCS5A01G300400 chr4B 80.838 167 24 6 435 598 74351873 74351712 2.010000e-24 124.0
60 TraesCS5A01G300400 chr4B 84.426 122 17 2 734 854 481527700 481527820 9.330000e-23 119.0
61 TraesCS5A01G300400 chrUn 80.723 166 24 6 440 602 18917239 18917079 7.210000e-24 122.0
62 TraesCS5A01G300400 chr1B 80.571 175 18 13 434 601 546704467 546704302 2.590000e-23 121.0
63 TraesCS5A01G300400 chr4A 84.426 122 17 2 734 854 706202051 706201931 9.330000e-23 119.0
64 TraesCS5A01G300400 chr6B 82.787 122 19 2 734 854 526105055 526105175 2.020000e-19 108.0
65 TraesCS5A01G300400 chr6A 82.418 91 7 7 1503 1593 529566727 529566808 2.650000e-08 71.3
66 TraesCS5A01G300400 chr3B 82.955 88 6 6 1506 1593 23958026 23957948 2.650000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G300400 chr5A 509653372 509658675 5303 True 9795.000000 9795 100.000000 1 5304 1 chr5A.!!$R1 5303
1 TraesCS5A01G300400 chr5A 599799569 599800452 883 True 315.500000 431 82.265000 3433 4344 2 chr5A.!!$R2 911
2 TraesCS5A01G300400 chr5D 404492044 404497547 5503 False 951.428571 2209 90.360571 1 5304 7 chr5D.!!$F3 5303
3 TraesCS5A01G300400 chr5B 485902164 485907790 5626 False 773.375000 2121 90.442000 1 5304 8 chr5B.!!$F2 5303
4 TraesCS5A01G300400 chr5B 629938440 629938943 503 True 651.000000 651 90.058000 4567 5073 1 chr5B.!!$R2 506
5 TraesCS5A01G300400 chr2B 787323483 787324057 574 False 654.000000 654 87.713000 4518 5083 1 chr2B.!!$F1 565
6 TraesCS5A01G300400 chr2B 10772974 10774041 1067 False 358.500000 534 85.730000 3141 4037 2 chr2B.!!$F2 896
7 TraesCS5A01G300400 chr2A 13036644 13037163 519 True 449.000000 449 82.732000 3962 4474 1 chr2A.!!$R1 512

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
161 163 0.112025 TGGTTGGTGTCCATGCATGA 59.888 50.000 28.31 11.26 31.53 3.07 F
1700 1963 0.110056 CCTGCATGTTGACACTTCGC 60.110 55.000 0.00 0.00 0.00 4.70 F
2067 2347 0.469917 AGACACACACTGGTTGGAGG 59.530 55.000 0.00 0.00 0.00 4.30 F
3124 3735 0.110644 CCGCAAGTCGCTTCTGAAAC 60.111 55.000 0.00 0.00 39.08 2.78 F
3537 4341 1.949525 CCCAACGCAAAGATCTATGGG 59.050 52.381 0.00 4.10 40.02 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1722 1985 0.249447 CCGACGCATCAAGCAGGATA 60.249 55.000 0.00 0.0 46.13 2.59 R
2802 3333 0.609957 TGTTGAATGGGCCTGAGCTG 60.610 55.000 4.53 0.0 39.73 4.24 R
3318 3929 0.833287 TCTCATAGAGCTGGGTTGCC 59.167 55.000 0.00 0.0 0.00 4.52 R
4087 4962 0.179081 GTACCACGATGAGCTTCCCC 60.179 60.000 0.00 0.0 0.00 4.81 R
4600 5902 1.071385 AGTGCAGGAACCACTCAGAAG 59.929 52.381 0.00 0.0 39.19 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
148 150 1.073125 TGTACATGTCAGGGTGGTTGG 59.927 52.381 0.00 0.00 0.00 3.77
161 163 0.112025 TGGTTGGTGTCCATGCATGA 59.888 50.000 28.31 11.26 31.53 3.07
183 185 4.506354 AGAATGGGATGGATGAGTGGATA 58.494 43.478 0.00 0.00 0.00 2.59
189 191 5.032846 GGGATGGATGAGTGGATATCCTAA 58.967 45.833 22.35 0.00 42.67 2.69
312 318 1.378762 CCCGAGCCTCCCAAAAAGA 59.621 57.895 0.00 0.00 0.00 2.52
395 409 1.412710 TCCGCTTTTCACACTCACTCT 59.587 47.619 0.00 0.00 0.00 3.24
431 445 2.674220 GGCCTCCCTTCCTCCACTG 61.674 68.421 0.00 0.00 0.00 3.66
433 447 1.904990 GCCTCCCTTCCTCCACTGTC 61.905 65.000 0.00 0.00 0.00 3.51
438 452 1.827969 CCCTTCCTCCACTGTCTACTG 59.172 57.143 0.00 0.00 0.00 2.74
453 467 4.721776 TGTCTACTGCCTCCATTCCTAAAT 59.278 41.667 0.00 0.00 0.00 1.40
454 468 5.903010 TGTCTACTGCCTCCATTCCTAAATA 59.097 40.000 0.00 0.00 0.00 1.40
455 469 6.558775 TGTCTACTGCCTCCATTCCTAAATAT 59.441 38.462 0.00 0.00 0.00 1.28
459 473 9.965902 CTACTGCCTCCATTCCTAAATATAAAT 57.034 33.333 0.00 0.00 0.00 1.40
538 552 8.136057 AGTATAGATTCACTCATTTTGCTTCG 57.864 34.615 0.00 0.00 0.00 3.79
539 553 6.992063 ATAGATTCACTCATTTTGCTTCGT 57.008 33.333 0.00 0.00 0.00 3.85
540 554 9.031360 GTATAGATTCACTCATTTTGCTTCGTA 57.969 33.333 0.00 0.00 0.00 3.43
542 556 5.352569 AGATTCACTCATTTTGCTTCGTAGG 59.647 40.000 0.00 0.00 0.00 3.18
543 557 4.002906 TCACTCATTTTGCTTCGTAGGT 57.997 40.909 0.00 0.00 0.00 3.08
544 558 5.142061 TCACTCATTTTGCTTCGTAGGTA 57.858 39.130 0.00 0.00 0.00 3.08
545 559 4.927425 TCACTCATTTTGCTTCGTAGGTAC 59.073 41.667 0.00 0.00 0.00 3.34
603 719 9.862149 TTTTTAAAAAGAGAGGGAGTACAATCT 57.138 29.630 9.31 0.00 0.00 2.40
604 720 9.862149 TTTTAAAAAGAGAGGGAGTACAATCTT 57.138 29.630 0.00 0.00 0.00 2.40
637 753 9.307121 GATTTTACTATGGATCAGATACGGATG 57.693 37.037 0.00 0.00 0.00 3.51
678 794 9.513906 TTAGAGTGTGGATTCATTCATTTTACA 57.486 29.630 0.00 0.00 0.00 2.41
680 796 6.924111 AGTGTGGATTCATTCATTTTACACC 58.076 36.000 0.00 0.00 37.26 4.16
681 797 6.071391 AGTGTGGATTCATTCATTTTACACCC 60.071 38.462 0.00 0.00 37.26 4.61
684 800 7.122055 TGTGGATTCATTCATTTTACACCCTAC 59.878 37.037 0.00 0.00 0.00 3.18
685 801 7.122055 GTGGATTCATTCATTTTACACCCTACA 59.878 37.037 0.00 0.00 0.00 2.74
690 806 6.951198 TCATTCATTTTACACCCTACATGGTT 59.049 34.615 0.00 0.00 36.12 3.67
695 811 8.110271 TCATTTTACACCCTACATGGTTCATAA 58.890 33.333 0.00 0.00 36.12 1.90
853 969 7.805163 TGTATGTGGTCCATAATGAAATCTCT 58.195 34.615 0.00 0.00 37.77 3.10
854 970 7.716560 TGTATGTGGTCCATAATGAAATCTCTG 59.283 37.037 0.00 0.00 37.77 3.35
855 971 4.883585 TGTGGTCCATAATGAAATCTCTGC 59.116 41.667 0.00 0.00 0.00 4.26
857 973 3.499918 GGTCCATAATGAAATCTCTGCCG 59.500 47.826 0.00 0.00 0.00 5.69
858 974 4.380531 GTCCATAATGAAATCTCTGCCGA 58.619 43.478 0.00 0.00 0.00 5.54
859 975 4.450419 GTCCATAATGAAATCTCTGCCGAG 59.550 45.833 0.00 0.00 38.67 4.63
894 1140 8.828644 CGGAGTATATATGATATATCTACCCGC 58.171 40.741 13.79 0.24 0.00 6.13
920 1166 2.476051 CGCGAACCACATCACAGC 59.524 61.111 0.00 0.00 0.00 4.40
921 1167 2.316867 CGCGAACCACATCACAGCA 61.317 57.895 0.00 0.00 0.00 4.41
922 1168 1.207593 GCGAACCACATCACAGCAC 59.792 57.895 0.00 0.00 0.00 4.40
923 1169 1.506309 GCGAACCACATCACAGCACA 61.506 55.000 0.00 0.00 0.00 4.57
924 1170 0.235665 CGAACCACATCACAGCACAC 59.764 55.000 0.00 0.00 0.00 3.82
959 1205 1.667724 GCCACTGATTCATCAACTCCG 59.332 52.381 0.00 0.00 36.18 4.63
1158 1407 2.996395 CAGCAGCAGGAGGACCAT 59.004 61.111 0.00 0.00 38.94 3.55
1159 1408 1.153208 CAGCAGCAGGAGGACCATC 60.153 63.158 0.00 0.00 38.94 3.51
1160 1409 2.191641 GCAGCAGGAGGACCATCC 59.808 66.667 0.00 0.00 39.89 3.51
1161 1410 2.914289 CAGCAGGAGGACCATCCC 59.086 66.667 0.00 0.00 40.53 3.85
1162 1411 2.765807 AGCAGGAGGACCATCCCG 60.766 66.667 0.00 0.00 40.53 5.14
1163 1412 4.554036 GCAGGAGGACCATCCCGC 62.554 72.222 0.00 0.00 40.53 6.13
1239 1488 3.243704 CCGCTTCCATCTTCTTCCTCTAG 60.244 52.174 0.00 0.00 0.00 2.43
1242 1491 4.202212 GCTTCCATCTTCTTCCTCTAGTCC 60.202 50.000 0.00 0.00 0.00 3.85
1245 1494 6.281190 TCCATCTTCTTCCTCTAGTCCATA 57.719 41.667 0.00 0.00 0.00 2.74
1260 1519 8.107196 TCTAGTCCATATAGCTCCATCTGATA 57.893 38.462 0.00 0.00 0.00 2.15
1271 1530 2.166829 CCATCTGATACTCCCTCCTCG 58.833 57.143 0.00 0.00 0.00 4.63
1272 1531 2.166829 CATCTGATACTCCCTCCTCGG 58.833 57.143 0.00 0.00 0.00 4.63
1273 1532 1.519498 TCTGATACTCCCTCCTCGGA 58.481 55.000 0.00 0.00 33.16 4.55
1274 1533 2.066592 TCTGATACTCCCTCCTCGGAT 58.933 52.381 0.00 0.00 33.16 4.18
1275 1534 2.166829 CTGATACTCCCTCCTCGGATG 58.833 57.143 0.00 0.00 33.16 3.51
1276 1535 1.499438 TGATACTCCCTCCTCGGATGT 59.501 52.381 0.00 0.00 33.16 3.06
1280 1540 1.499438 ACTCCCTCCTCGGATGTGATA 59.501 52.381 0.00 0.00 33.16 2.15
1302 1562 0.322648 TGATATGGCAGCTCATCGGG 59.677 55.000 0.00 0.00 0.00 5.14
1323 1583 4.065281 ACGCCGCTGGTGTACCTC 62.065 66.667 11.27 0.00 45.32 3.85
1377 1637 2.097038 CGCCAAGCTCGAGTTCCTG 61.097 63.158 15.13 4.08 0.00 3.86
1447 1707 6.480320 CCTTAATTAATCTCCTCTTCACGTGG 59.520 42.308 17.00 0.00 0.00 4.94
1466 1726 1.733041 CAGTCACGCACGTCCGATT 60.733 57.895 5.57 0.00 0.00 3.34
1467 1727 1.443872 AGTCACGCACGTCCGATTC 60.444 57.895 5.57 0.00 0.00 2.52
1468 1728 2.503158 TCACGCACGTCCGATTCG 60.503 61.111 5.57 0.00 0.00 3.34
1480 1743 4.142403 ACGTCCGATTCGTCCTAATTTACA 60.142 41.667 5.20 0.00 36.85 2.41
1482 1745 5.051907 CGTCCGATTCGTCCTAATTTACAAG 60.052 44.000 5.20 0.00 0.00 3.16
1484 1747 5.808540 TCCGATTCGTCCTAATTTACAAGTG 59.191 40.000 5.20 0.00 0.00 3.16
1486 1749 4.914312 TTCGTCCTAATTTACAAGTGCG 57.086 40.909 0.00 0.00 0.00 5.34
1489 1752 5.097529 TCGTCCTAATTTACAAGTGCGTAG 58.902 41.667 0.00 0.00 0.00 3.51
1492 1755 6.021153 CGTCCTAATTTACAAGTGCGTAGTAC 60.021 42.308 0.00 0.00 45.64 2.73
1502 1765 3.959573 GTGCGTAGTACGAGATTAGGT 57.040 47.619 26.29 0.00 46.05 3.08
1504 1767 5.016275 GTGCGTAGTACGAGATTAGGTAG 57.984 47.826 26.29 0.00 46.05 3.18
1505 1768 4.509600 GTGCGTAGTACGAGATTAGGTAGT 59.490 45.833 26.29 0.00 46.05 2.73
1506 1769 5.692204 GTGCGTAGTACGAGATTAGGTAGTA 59.308 44.000 26.29 0.00 46.05 1.82
1507 1770 5.692204 TGCGTAGTACGAGATTAGGTAGTAC 59.308 44.000 26.29 3.78 46.05 2.73
1508 1771 5.923684 GCGTAGTACGAGATTAGGTAGTACT 59.076 44.000 26.29 0.00 46.05 2.73
1509 1772 6.088883 GCGTAGTACGAGATTAGGTAGTACTC 59.911 46.154 26.29 0.00 46.05 2.59
1510 1773 6.584563 CGTAGTACGAGATTAGGTAGTACTCC 59.415 46.154 17.85 0.48 46.05 3.85
1511 1774 5.863965 AGTACGAGATTAGGTAGTACTCCC 58.136 45.833 0.00 0.00 42.79 4.30
1512 1775 5.606329 AGTACGAGATTAGGTAGTACTCCCT 59.394 44.000 12.22 12.22 42.79 4.20
1513 1776 4.971939 ACGAGATTAGGTAGTACTCCCTC 58.028 47.826 10.79 7.52 32.08 4.30
1514 1777 4.202451 ACGAGATTAGGTAGTACTCCCTCC 60.202 50.000 10.79 4.42 32.08 4.30
1515 1778 4.325972 GAGATTAGGTAGTACTCCCTCCG 58.674 52.174 10.79 0.00 32.08 4.63
1516 1779 3.979347 AGATTAGGTAGTACTCCCTCCGA 59.021 47.826 10.79 0.00 32.08 4.55
1517 1780 4.602732 AGATTAGGTAGTACTCCCTCCGAT 59.397 45.833 10.79 4.16 32.08 4.18
1518 1781 2.955342 AGGTAGTACTCCCTCCGATC 57.045 55.000 0.11 0.00 0.00 3.69
1519 1782 2.420705 AGGTAGTACTCCCTCCGATCT 58.579 52.381 0.11 0.00 0.00 2.75
1520 1783 2.784682 AGGTAGTACTCCCTCCGATCTT 59.215 50.000 0.11 0.00 0.00 2.40
1521 1784 3.148412 GGTAGTACTCCCTCCGATCTTC 58.852 54.545 0.00 0.00 0.00 2.87
1522 1785 3.181441 GGTAGTACTCCCTCCGATCTTCT 60.181 52.174 0.00 0.00 0.00 2.85
1523 1786 4.041444 GGTAGTACTCCCTCCGATCTTCTA 59.959 50.000 0.00 0.00 0.00 2.10
1524 1787 5.280624 GGTAGTACTCCCTCCGATCTTCTAT 60.281 48.000 0.00 0.00 0.00 1.98
1525 1788 5.327737 AGTACTCCCTCCGATCTTCTATT 57.672 43.478 0.00 0.00 0.00 1.73
1526 1789 5.074115 AGTACTCCCTCCGATCTTCTATTG 58.926 45.833 0.00 0.00 0.00 1.90
1527 1790 4.186077 ACTCCCTCCGATCTTCTATTGA 57.814 45.455 0.00 0.00 0.00 2.57
1528 1791 4.746466 ACTCCCTCCGATCTTCTATTGAT 58.254 43.478 0.00 0.00 0.00 2.57
1529 1792 5.151454 ACTCCCTCCGATCTTCTATTGATT 58.849 41.667 0.00 0.00 0.00 2.57
1530 1793 6.315714 ACTCCCTCCGATCTTCTATTGATTA 58.684 40.000 0.00 0.00 0.00 1.75
1531 1794 6.957020 ACTCCCTCCGATCTTCTATTGATTAT 59.043 38.462 0.00 0.00 0.00 1.28
1532 1795 8.116669 ACTCCCTCCGATCTTCTATTGATTATA 58.883 37.037 0.00 0.00 0.00 0.98
1533 1796 8.895141 TCCCTCCGATCTTCTATTGATTATAA 57.105 34.615 0.00 0.00 0.00 0.98
1534 1797 8.972127 TCCCTCCGATCTTCTATTGATTATAAG 58.028 37.037 0.00 0.00 0.00 1.73
1535 1798 8.972127 CCCTCCGATCTTCTATTGATTATAAGA 58.028 37.037 0.00 0.00 30.30 2.10
1658 1921 6.640907 CCGTTATCAATCAGTTGTCGATCATA 59.359 38.462 0.00 0.00 36.69 2.15
1692 1955 4.976224 CAGATCAATTCCTGCATGTTGA 57.024 40.909 0.00 0.00 35.33 3.18
1693 1956 4.669318 CAGATCAATTCCTGCATGTTGAC 58.331 43.478 0.00 0.00 33.85 3.18
1694 1957 4.157105 CAGATCAATTCCTGCATGTTGACA 59.843 41.667 0.00 0.00 33.85 3.58
1695 1958 3.921119 TCAATTCCTGCATGTTGACAC 57.079 42.857 0.00 0.00 0.00 3.67
1696 1959 3.489355 TCAATTCCTGCATGTTGACACT 58.511 40.909 0.00 0.00 0.00 3.55
1697 1960 3.890756 TCAATTCCTGCATGTTGACACTT 59.109 39.130 0.00 0.00 0.00 3.16
1698 1961 4.022935 TCAATTCCTGCATGTTGACACTTC 60.023 41.667 0.00 0.00 0.00 3.01
1699 1962 1.511850 TCCTGCATGTTGACACTTCG 58.488 50.000 0.00 0.00 0.00 3.79
1700 1963 0.110056 CCTGCATGTTGACACTTCGC 60.110 55.000 0.00 0.00 0.00 4.70
1701 1964 0.870393 CTGCATGTTGACACTTCGCT 59.130 50.000 0.00 0.00 0.00 4.93
1702 1965 1.265095 CTGCATGTTGACACTTCGCTT 59.735 47.619 0.00 0.00 0.00 4.68
1703 1966 1.264020 TGCATGTTGACACTTCGCTTC 59.736 47.619 0.00 0.00 0.00 3.86
1704 1967 1.532868 GCATGTTGACACTTCGCTTCT 59.467 47.619 0.00 0.00 0.00 2.85
1705 1968 2.663879 GCATGTTGACACTTCGCTTCTG 60.664 50.000 0.00 0.00 0.00 3.02
1706 1969 2.595124 TGTTGACACTTCGCTTCTGA 57.405 45.000 0.00 0.00 0.00 3.27
1707 1970 2.899976 TGTTGACACTTCGCTTCTGAA 58.100 42.857 0.00 0.00 0.00 3.02
1708 1971 3.466836 TGTTGACACTTCGCTTCTGAAT 58.533 40.909 0.00 0.00 0.00 2.57
1709 1972 3.876914 TGTTGACACTTCGCTTCTGAATT 59.123 39.130 0.00 0.00 0.00 2.17
1710 1973 4.024893 TGTTGACACTTCGCTTCTGAATTC 60.025 41.667 0.00 0.00 0.00 2.17
1711 1974 3.995199 TGACACTTCGCTTCTGAATTCT 58.005 40.909 7.05 0.00 0.00 2.40
1712 1975 3.742882 TGACACTTCGCTTCTGAATTCTG 59.257 43.478 7.05 6.50 0.00 3.02
1713 1976 3.990469 GACACTTCGCTTCTGAATTCTGA 59.010 43.478 10.68 10.68 0.00 3.27
1714 1977 4.573900 ACACTTCGCTTCTGAATTCTGAT 58.426 39.130 14.89 0.00 0.00 2.90
1715 1978 4.391216 ACACTTCGCTTCTGAATTCTGATG 59.609 41.667 14.89 16.85 0.00 3.07
1716 1979 4.391216 CACTTCGCTTCTGAATTCTGATGT 59.609 41.667 21.45 10.55 0.00 3.06
1717 1980 4.391216 ACTTCGCTTCTGAATTCTGATGTG 59.609 41.667 24.05 24.05 33.74 3.21
1718 1981 4.192429 TCGCTTCTGAATTCTGATGTGA 57.808 40.909 26.52 26.52 36.71 3.58
1719 1982 4.763073 TCGCTTCTGAATTCTGATGTGAT 58.237 39.130 26.52 0.00 35.34 3.06
1720 1983 5.906073 TCGCTTCTGAATTCTGATGTGATA 58.094 37.500 26.52 14.74 35.34 2.15
1721 1984 6.340522 TCGCTTCTGAATTCTGATGTGATAA 58.659 36.000 26.52 14.26 35.34 1.75
1722 1985 6.988580 TCGCTTCTGAATTCTGATGTGATAAT 59.011 34.615 26.52 0.00 35.34 1.28
1723 1986 8.143835 TCGCTTCTGAATTCTGATGTGATAATA 58.856 33.333 26.52 13.77 35.34 0.98
1724 1987 8.933807 CGCTTCTGAATTCTGATGTGATAATAT 58.066 33.333 25.00 0.00 34.06 1.28
1728 1991 9.939802 TCTGAATTCTGATGTGATAATATCCTG 57.060 33.333 10.68 0.00 0.00 3.86
1729 1992 8.557592 TGAATTCTGATGTGATAATATCCTGC 57.442 34.615 7.05 0.00 0.00 4.85
1735 1998 7.822822 TCTGATGTGATAATATCCTGCTTGATG 59.177 37.037 0.00 0.00 0.00 3.07
1736 1999 6.373495 TGATGTGATAATATCCTGCTTGATGC 59.627 38.462 0.00 0.00 43.25 3.91
1757 2020 0.834612 TCGGTTGGTGGACAAGAACT 59.165 50.000 0.00 0.00 40.38 3.01
1758 2021 2.040939 TCGGTTGGTGGACAAGAACTA 58.959 47.619 0.00 0.00 40.38 2.24
1776 2039 6.754193 AGAACTATAGCAGCTTATCCACTTC 58.246 40.000 0.00 0.00 0.00 3.01
1795 2070 6.110033 CACTTCTGCTCTAGACTAGACAGTA 58.890 44.000 25.23 19.99 36.37 2.74
1796 2071 6.257849 CACTTCTGCTCTAGACTAGACAGTAG 59.742 46.154 25.79 25.79 37.37 2.57
1797 2072 6.155565 ACTTCTGCTCTAGACTAGACAGTAGA 59.844 42.308 29.48 22.59 36.33 2.59
1798 2073 5.909477 TCTGCTCTAGACTAGACAGTAGAC 58.091 45.833 25.23 10.13 36.37 2.59
1799 2074 5.422650 TCTGCTCTAGACTAGACAGTAGACA 59.577 44.000 25.23 13.63 36.37 3.41
1800 2075 5.666462 TGCTCTAGACTAGACAGTAGACAG 58.334 45.833 8.17 0.00 34.21 3.51
1801 2076 4.510340 GCTCTAGACTAGACAGTAGACAGC 59.490 50.000 8.17 3.79 34.21 4.40
1802 2077 5.026038 TCTAGACTAGACAGTAGACAGCC 57.974 47.826 8.17 0.00 34.21 4.85
1803 2078 3.722908 AGACTAGACAGTAGACAGCCA 57.277 47.619 0.00 0.00 34.21 4.75
1804 2079 4.035612 AGACTAGACAGTAGACAGCCAA 57.964 45.455 0.00 0.00 34.21 4.52
1805 2080 4.013728 AGACTAGACAGTAGACAGCCAAG 58.986 47.826 0.00 0.00 34.21 3.61
1806 2081 3.759618 GACTAGACAGTAGACAGCCAAGT 59.240 47.826 0.00 0.00 34.21 3.16
1810 2085 1.620819 ACAGTAGACAGCCAAGTGGAG 59.379 52.381 0.18 0.00 37.39 3.86
1830 2105 2.028930 AGCCAATCGAATATCCGGTCTC 60.029 50.000 0.00 0.00 0.00 3.36
1904 2181 1.228245 GGCAGGCTCCAACAAGTCA 60.228 57.895 0.00 0.00 0.00 3.41
1978 2255 1.208535 CCTGAACTAATACCGCCCACA 59.791 52.381 0.00 0.00 0.00 4.17
2006 2283 6.582672 CGGCATATATACGATCCATGTCATAC 59.417 42.308 3.59 0.00 0.00 2.39
2011 2288 7.703058 ATATACGATCCATGTCATACTCACA 57.297 36.000 0.00 0.00 0.00 3.58
2017 2294 2.196749 CATGTCATACTCACAGACGGC 58.803 52.381 0.00 0.00 35.09 5.68
2067 2347 0.469917 AGACACACACTGGTTGGAGG 59.530 55.000 0.00 0.00 0.00 4.30
2082 2362 1.205655 TGGAGGACATCTCGAGCAAAG 59.794 52.381 7.81 0.00 43.34 2.77
2162 2442 4.367023 CGGTCGCTTTCGTGGGGA 62.367 66.667 0.00 0.00 36.96 4.81
2170 2451 3.127895 TCGCTTTCGTGGGGAAAATAATG 59.872 43.478 0.00 0.00 43.73 1.90
2183 2464 5.714806 GGGAAAATAATGAAGGGACAAGTCA 59.285 40.000 2.29 0.00 0.00 3.41
2185 2466 6.659242 GGAAAATAATGAAGGGACAAGTCAGA 59.341 38.462 2.29 0.00 0.00 3.27
2334 2624 2.536066 AGCCCACCTTAATTTTGGTCC 58.464 47.619 0.00 0.00 33.75 4.46
2345 2635 8.638873 ACCTTAATTTTGGTCCTTTAAGTCTTG 58.361 33.333 0.00 0.00 32.35 3.02
2346 2636 8.638873 CCTTAATTTTGGTCCTTTAAGTCTTGT 58.361 33.333 0.00 0.00 32.35 3.16
2349 2639 8.762481 AATTTTGGTCCTTTAAGTCTTGTACT 57.238 30.769 0.00 0.00 41.49 2.73
2350 2640 7.562454 TTTTGGTCCTTTAAGTCTTGTACTG 57.438 36.000 0.00 0.00 38.88 2.74
2351 2641 5.223449 TGGTCCTTTAAGTCTTGTACTGG 57.777 43.478 0.00 0.00 38.88 4.00
2352 2642 4.903049 TGGTCCTTTAAGTCTTGTACTGGA 59.097 41.667 0.00 0.00 38.88 3.86
2353 2643 5.011738 TGGTCCTTTAAGTCTTGTACTGGAG 59.988 44.000 0.00 0.00 38.88 3.86
2407 2883 4.600062 TCCAGATCTACAAGCTAGTGTGA 58.400 43.478 0.00 0.00 32.75 3.58
2424 2949 2.282745 AAGCTGGCAACCTGGCTC 60.283 61.111 0.00 0.00 44.10 4.70
2428 2953 4.704833 TGGCAACCTGGCTCGCTC 62.705 66.667 0.00 0.00 44.10 5.03
2434 2959 4.292178 CCTGGCTCGCTCGATCCC 62.292 72.222 9.32 6.06 29.93 3.85
2492 3017 8.706322 ATCCTTAACTGTTAACAAACCTGAAT 57.294 30.769 10.03 0.00 0.00 2.57
2557 3082 2.437200 TACAGCCAAAACAAGCATGC 57.563 45.000 10.51 10.51 0.00 4.06
2569 3094 7.535940 CCAAAACAAGCATGCAAAATGAAATAG 59.464 33.333 21.98 5.57 0.00 1.73
2573 3098 6.369615 ACAAGCATGCAAAATGAAATAGGAAC 59.630 34.615 21.98 0.00 0.00 3.62
2576 3101 7.107542 AGCATGCAAAATGAAATAGGAACATT 58.892 30.769 21.98 0.00 36.07 2.71
2583 3108 9.703892 CAAAATGAAATAGGAACATTACCAACA 57.296 29.630 0.00 0.00 34.48 3.33
2633 3158 1.534729 AACAAGAATTCCACCTCCGC 58.465 50.000 0.65 0.00 0.00 5.54
2664 3189 9.647797 TGTGTGAATAAGTGATTAATACGTCTT 57.352 29.630 0.00 0.00 0.00 3.01
2754 3279 2.186243 AGGTCAGTCATCACTCATGCT 58.814 47.619 0.00 0.00 31.70 3.79
2780 3306 8.420374 TTCAGATAAATCGACAACTGTATTCC 57.580 34.615 0.00 0.00 0.00 3.01
2782 3308 5.462398 AGATAAATCGACAACTGTATTCCGC 59.538 40.000 0.00 0.00 0.00 5.54
2802 3333 4.319549 CCGCAAAAAGTACCTCTTGAACTC 60.320 45.833 3.32 0.00 36.40 3.01
2822 3353 0.112995 AGCTCAGGCCCATTCAACAA 59.887 50.000 0.00 0.00 39.73 2.83
2826 3357 1.203162 TCAGGCCCATTCAACAACCAT 60.203 47.619 0.00 0.00 0.00 3.55
2843 3374 3.412386 ACCATGAGGAAGTAGCAACAAC 58.588 45.455 0.00 0.00 38.69 3.32
2885 3416 7.421087 GGAAGTACTCCCTCTGTAAACTAAT 57.579 40.000 0.00 0.00 38.44 1.73
2887 3418 9.145442 GGAAGTACTCCCTCTGTAAACTAATAT 57.855 37.037 0.00 0.00 38.44 1.28
2893 3424 9.939424 ACTCCCTCTGTAAACTAATATAAGAGT 57.061 33.333 0.00 0.00 0.00 3.24
2895 3426 9.710818 TCCCTCTGTAAACTAATATAAGAGTGT 57.289 33.333 0.00 0.00 0.00 3.55
2942 3473 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
2943 3474 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
2944 3475 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
2945 3476 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
2946 3477 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
2947 3478 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
2948 3479 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
2949 3480 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
2950 3481 8.773033 TCTTATATTAGTTTACGGAGGGAGTT 57.227 34.615 0.00 0.00 0.00 3.01
2951 3482 8.636213 TCTTATATTAGTTTACGGAGGGAGTTG 58.364 37.037 0.00 0.00 0.00 3.16
2952 3483 6.803366 ATATTAGTTTACGGAGGGAGTTGT 57.197 37.500 0.00 0.00 0.00 3.32
2953 3484 7.902920 ATATTAGTTTACGGAGGGAGTTGTA 57.097 36.000 0.00 0.00 0.00 2.41
2954 3485 6.610075 ATTAGTTTACGGAGGGAGTTGTAA 57.390 37.500 0.00 0.00 0.00 2.41
2955 3486 4.961438 AGTTTACGGAGGGAGTTGTAAA 57.039 40.909 0.00 0.00 35.18 2.01
2956 3487 5.494390 AGTTTACGGAGGGAGTTGTAAAT 57.506 39.130 0.46 0.00 38.57 1.40
2957 3488 5.872963 AGTTTACGGAGGGAGTTGTAAATT 58.127 37.500 0.46 0.00 38.57 1.82
2958 3489 6.301486 AGTTTACGGAGGGAGTTGTAAATTT 58.699 36.000 0.00 0.00 38.57 1.82
2959 3490 6.206048 AGTTTACGGAGGGAGTTGTAAATTTG 59.794 38.462 0.00 0.00 38.57 2.32
2960 3491 3.418047 ACGGAGGGAGTTGTAAATTTGG 58.582 45.455 0.00 0.00 0.00 3.28
3010 3569 5.423015 TCACTTGGAAATAGCACTGAGATC 58.577 41.667 0.00 0.00 0.00 2.75
3016 3575 4.494855 GGAAATAGCACTGAGATCGCAAAC 60.495 45.833 0.00 0.00 0.00 2.93
3024 3583 2.004733 TGAGATCGCAAACATGCTGAG 58.995 47.619 0.00 0.00 0.00 3.35
3034 3593 4.156556 GCAAACATGCTGAGACAATAGGAA 59.843 41.667 0.00 0.00 0.00 3.36
3039 3598 5.163269 ACATGCTGAGACAATAGGAAGCATA 60.163 40.000 7.56 0.00 46.63 3.14
3041 3600 6.670695 TGCTGAGACAATAGGAAGCATATA 57.329 37.500 0.00 0.00 35.84 0.86
3044 3603 6.589523 GCTGAGACAATAGGAAGCATATACTG 59.410 42.308 0.00 0.00 0.00 2.74
3045 3604 7.603180 TGAGACAATAGGAAGCATATACTGT 57.397 36.000 0.00 0.00 0.00 3.55
3046 3605 7.661968 TGAGACAATAGGAAGCATATACTGTC 58.338 38.462 0.00 0.00 0.00 3.51
3049 3608 8.709308 AGACAATAGGAAGCATATACTGTCTTT 58.291 33.333 0.00 0.00 38.18 2.52
3051 3610 9.686683 ACAATAGGAAGCATATACTGTCTTTTT 57.313 29.630 0.00 0.00 0.00 1.94
3070 3629 1.337118 TTTTTGCGGGAAGGAAGCAT 58.663 45.000 0.00 0.00 40.83 3.79
3097 3708 3.966665 TGTCACACCTGCATATGGATCTA 59.033 43.478 4.56 0.00 0.00 1.98
3124 3735 0.110644 CCGCAAGTCGCTTCTGAAAC 60.111 55.000 0.00 0.00 39.08 2.78
3318 3929 2.266055 GGAGGCACCGTCAGGAAG 59.734 66.667 0.00 0.00 41.02 3.46
3537 4341 1.949525 CCCAACGCAAAGATCTATGGG 59.050 52.381 0.00 4.10 40.02 4.00
3552 4356 2.359975 GGGGTTGAACCTGCCGAG 60.360 66.667 14.87 0.00 38.64 4.63
3750 4568 6.888632 AGCCAGATATTTTGGACATGGATATC 59.111 38.462 10.49 0.00 37.96 1.63
3786 4609 3.010138 TGGAGGTAAGGAATCAAACTGGG 59.990 47.826 0.00 0.00 0.00 4.45
4087 4962 2.747436 GCAAAGAGGCCAGAAAACAAG 58.253 47.619 5.01 0.00 0.00 3.16
4131 5007 9.201989 ACGACATACATACCCATATCTATGAAT 57.798 33.333 0.00 0.00 35.75 2.57
4222 5099 1.446099 GACTGTTCATCCGAGCGCA 60.446 57.895 11.47 0.00 0.00 6.09
4318 5198 5.361285 AGTGGACTAACTTGGAGCTATACAG 59.639 44.000 0.00 0.00 0.00 2.74
4401 5287 6.698008 TTCTTCAGTTTGTTCATCATGTGT 57.302 33.333 0.00 0.00 0.00 3.72
4416 5303 7.394016 TCATCATGTGTACCTCTGTAAACAAT 58.606 34.615 0.24 0.00 45.86 2.71
4417 5304 7.334171 TCATCATGTGTACCTCTGTAAACAATG 59.666 37.037 0.24 1.90 45.86 2.82
4549 5837 7.756722 GCTTCTTTGATAACAACAATGCATACT 59.243 33.333 0.00 0.00 35.63 2.12
4600 5902 5.062683 CCATCATTGTCCGTATCGATGATTC 59.937 44.000 8.54 0.00 41.63 2.52
4644 5946 3.311322 TCAAACAGAAGTACAAAGCCACG 59.689 43.478 0.00 0.00 0.00 4.94
4680 5984 0.591170 ACATAACGCAAGCGCAACTT 59.409 45.000 15.09 3.85 44.19 2.66
4833 6146 2.480419 CACCTTTAGTTTGCTCGAGGTG 59.520 50.000 15.58 6.66 44.25 4.00
4849 6162 6.228616 TCGAGGTGTCATATACCAATTTGA 57.771 37.500 0.00 0.00 40.74 2.69
4900 6221 9.047947 AGGTATCACTGATTACCTTCTTAGTTT 57.952 33.333 11.52 0.00 39.73 2.66
4983 6304 1.071542 TGAACCAACCAATCGAGCTGA 59.928 47.619 0.00 0.00 0.00 4.26
4996 6317 4.280436 TCGAGCTGATTTTACCTTTCCA 57.720 40.909 0.00 0.00 0.00 3.53
5033 6354 6.609876 AGATTCAGATCTGCCTCTCTAGTAA 58.390 40.000 18.36 3.33 41.09 2.24
5083 6404 5.232838 GGCATTAACAAGCAAGCATTATCAC 59.767 40.000 0.00 0.00 0.00 3.06
5117 6438 6.431234 ACCTAACAAGGACATAAAGAGCAAAG 59.569 38.462 0.00 0.00 0.00 2.77
5122 6443 5.165961 AGGACATAAAGAGCAAAGCAGTA 57.834 39.130 0.00 0.00 0.00 2.74
5125 6446 6.490040 AGGACATAAAGAGCAAAGCAGTAAAA 59.510 34.615 0.00 0.00 0.00 1.52
5126 6447 6.803807 GGACATAAAGAGCAAAGCAGTAAAAG 59.196 38.462 0.00 0.00 0.00 2.27
5152 6477 6.655078 TGTATATGCAGAGCAGAGTCATAA 57.345 37.500 0.00 0.00 43.65 1.90
5174 6499 9.702726 CATAATTGTAATACAACCGAAAGTCAG 57.297 33.333 8.12 0.00 41.40 3.51
5210 6535 8.924511 TTCCTGAAGATAGAGAAATTGTGTTT 57.075 30.769 0.00 0.00 0.00 2.83
5211 6536 8.553459 TCCTGAAGATAGAGAAATTGTGTTTC 57.447 34.615 0.00 0.00 0.00 2.78
5232 6557 5.339008 TCTACTCGTGGAGCAATACAATT 57.661 39.130 0.00 0.00 32.04 2.32
5276 6603 3.399330 TGCCAGTGTTAACTAGTTCTGC 58.601 45.455 12.39 9.66 33.79 4.26
5291 6618 5.064441 AGTTCTGCCATGAAAATAAGCAC 57.936 39.130 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
148 150 1.679680 CCCATTCTCATGCATGGACAC 59.320 52.381 25.97 0.00 42.49 3.67
161 163 2.780414 TCCACTCATCCATCCCATTCT 58.220 47.619 0.00 0.00 0.00 2.40
209 211 0.545646 TCCATCATCCATGACGCCAA 59.454 50.000 0.00 0.00 40.03 4.52
297 302 3.388024 ACCTTTTTCTTTTTGGGAGGCTC 59.612 43.478 5.78 5.78 0.00 4.70
298 303 3.384168 ACCTTTTTCTTTTTGGGAGGCT 58.616 40.909 0.00 0.00 0.00 4.58
299 304 3.494398 GGACCTTTTTCTTTTTGGGAGGC 60.494 47.826 0.00 0.00 0.00 4.70
300 305 3.071023 GGGACCTTTTTCTTTTTGGGAGG 59.929 47.826 0.00 0.00 0.00 4.30
312 318 1.498176 CGGGAGGGAGGGACCTTTTT 61.498 60.000 0.00 0.00 42.10 1.94
395 409 2.579201 GGCGGCTTGTAGCAGAGA 59.421 61.111 0.00 0.00 44.75 3.10
422 436 0.409876 AGGCAGTAGACAGTGGAGGA 59.590 55.000 0.00 0.00 0.00 3.71
423 437 0.820871 GAGGCAGTAGACAGTGGAGG 59.179 60.000 0.00 0.00 0.00 4.30
431 445 4.755266 TTTAGGAATGGAGGCAGTAGAC 57.245 45.455 0.00 0.00 0.00 2.59
433 447 9.965902 ATTTATATTTAGGAATGGAGGCAGTAG 57.034 33.333 0.00 0.00 0.00 2.57
459 473 9.472361 GTAGCCTACGATGAAATCTGTAAAATA 57.528 33.333 0.00 0.00 42.58 1.40
460 474 7.985184 TGTAGCCTACGATGAAATCTGTAAAAT 59.015 33.333 0.00 0.00 42.58 1.82
466 480 5.569441 CGTATGTAGCCTACGATGAAATCTG 59.431 44.000 0.00 0.00 43.50 2.90
532 546 6.927936 CACTATAGACTAGTACCTACGAAGCA 59.072 42.308 6.78 0.00 0.00 3.91
533 547 7.151308 TCACTATAGACTAGTACCTACGAAGC 58.849 42.308 6.78 0.00 0.00 3.86
534 548 9.539825 TTTCACTATAGACTAGTACCTACGAAG 57.460 37.037 6.78 0.00 0.00 3.79
578 694 9.862149 AAGATTGTACTCCCTCTCTTTTTAAAA 57.138 29.630 0.00 0.00 0.00 1.52
583 699 6.842676 ACAAAGATTGTACTCCCTCTCTTTT 58.157 36.000 0.00 0.00 43.27 2.27
587 703 6.603997 TCTCTACAAAGATTGTACTCCCTCTC 59.396 42.308 0.00 0.00 43.27 3.20
588 704 6.494952 TCTCTACAAAGATTGTACTCCCTCT 58.505 40.000 0.00 0.00 43.27 3.69
661 777 7.639113 TGTAGGGTGTAAAATGAATGAATCC 57.361 36.000 0.00 0.00 0.00 3.01
678 794 7.586349 AGATTTCATTATGAACCATGTAGGGT 58.414 34.615 7.19 0.00 43.33 4.34
680 796 7.442364 ACGAGATTTCATTATGAACCATGTAGG 59.558 37.037 7.19 0.00 45.67 3.18
681 797 8.370493 ACGAGATTTCATTATGAACCATGTAG 57.630 34.615 7.19 1.99 35.89 2.74
684 800 7.923888 AGAACGAGATTTCATTATGAACCATG 58.076 34.615 7.19 0.29 35.89 3.66
685 801 8.511604 AAGAACGAGATTTCATTATGAACCAT 57.488 30.769 7.19 0.00 35.89 3.55
695 811 7.393234 TGGACCAATTTAAGAACGAGATTTCAT 59.607 33.333 0.00 0.00 0.00 2.57
770 886 7.437565 GCGTCTATATGCATTCATATGTGATCT 59.562 37.037 3.54 0.00 43.66 2.75
771 887 7.223387 TGCGTCTATATGCATTCATATGTGATC 59.777 37.037 3.54 0.00 43.66 2.92
773 889 6.397272 TGCGTCTATATGCATTCATATGTGA 58.603 36.000 3.54 4.11 43.66 3.58
774 890 6.651755 TGCGTCTATATGCATTCATATGTG 57.348 37.500 3.54 0.00 43.66 3.21
786 902 9.847706 ATCTACACTCTAAAATGCGTCTATATG 57.152 33.333 0.00 0.00 0.00 1.78
857 973 1.959042 TATACTCCGTCCGTGGTCTC 58.041 55.000 0.00 0.00 0.00 3.36
858 974 2.653234 ATATACTCCGTCCGTGGTCT 57.347 50.000 0.00 0.00 0.00 3.85
859 975 4.005650 TCATATATACTCCGTCCGTGGTC 58.994 47.826 0.00 0.00 0.00 4.02
861 977 6.879276 ATATCATATATACTCCGTCCGTGG 57.121 41.667 0.00 0.00 0.00 4.94
862 978 9.438228 AGATATATCATATATACTCCGTCCGTG 57.562 37.037 15.08 0.00 0.00 4.94
867 983 9.887629 CGGGTAGATATATCATATATACTCCGT 57.112 37.037 15.08 0.00 34.56 4.69
869 985 9.682465 TGCGGGTAGATATATCATATATACTCC 57.318 37.037 15.08 9.70 0.00 3.85
872 988 8.123575 CGCTGCGGGTAGATATATCATATATAC 58.876 40.741 15.40 7.79 0.00 1.47
875 991 6.002082 ACGCTGCGGGTAGATATATCATATA 58.998 40.000 26.95 0.00 0.00 0.86
877 993 4.036380 CACGCTGCGGGTAGATATATCATA 59.964 45.833 26.95 2.29 0.00 2.15
878 994 3.024547 ACGCTGCGGGTAGATATATCAT 58.975 45.455 26.95 3.18 0.00 2.45
879 995 2.163613 CACGCTGCGGGTAGATATATCA 59.836 50.000 26.95 0.00 0.00 2.15
880 996 2.798680 CACGCTGCGGGTAGATATATC 58.201 52.381 26.95 4.42 0.00 1.63
904 1150 1.207593 GTGCTGTGATGTGGTTCGC 59.792 57.895 0.00 0.00 0.00 4.70
914 1160 1.029408 GTTGGTGTGGTGTGCTGTGA 61.029 55.000 0.00 0.00 0.00 3.58
920 1166 3.947841 CGCGGTTGGTGTGGTGTG 61.948 66.667 0.00 0.00 0.00 3.82
948 1194 1.751351 CTAGTGGAGCGGAGTTGATGA 59.249 52.381 0.00 0.00 0.00 2.92
972 1218 2.280823 CTGCTCGGTCGGAAGGTACC 62.281 65.000 2.73 2.73 0.00 3.34
1163 1412 2.876368 GATGTTGAGCACCCCGGGAG 62.876 65.000 26.32 15.98 0.00 4.30
1239 1488 6.040391 GGAGTATCAGATGGAGCTATATGGAC 59.960 46.154 0.00 0.00 36.25 4.02
1242 1491 6.135454 AGGGAGTATCAGATGGAGCTATATG 58.865 44.000 0.00 0.00 36.25 1.78
1245 1494 4.571792 GGAGGGAGTATCAGATGGAGCTAT 60.572 50.000 0.00 0.00 36.25 2.97
1260 1519 0.263172 ATCACATCCGAGGAGGGAGT 59.737 55.000 8.71 0.00 40.02 3.85
1271 1530 4.334759 GCTGCCATATCACATATCACATCC 59.665 45.833 0.00 0.00 0.00 3.51
1272 1531 5.183969 AGCTGCCATATCACATATCACATC 58.816 41.667 0.00 0.00 0.00 3.06
1273 1532 5.175388 AGCTGCCATATCACATATCACAT 57.825 39.130 0.00 0.00 0.00 3.21
1274 1533 4.040706 TGAGCTGCCATATCACATATCACA 59.959 41.667 0.00 0.00 0.00 3.58
1275 1534 4.572909 TGAGCTGCCATATCACATATCAC 58.427 43.478 0.00 0.00 0.00 3.06
1276 1535 4.895668 TGAGCTGCCATATCACATATCA 57.104 40.909 0.00 0.00 0.00 2.15
1280 1540 2.614734 CCGATGAGCTGCCATATCACAT 60.615 50.000 0.00 0.00 0.00 3.21
1323 1583 2.347490 CCCTCCGTCACCCTGTTG 59.653 66.667 0.00 0.00 0.00 3.33
1377 1637 0.673644 TAACGCTGAAGGAAGGCTGC 60.674 55.000 0.00 0.00 0.00 5.25
1447 1707 4.994201 TCGGACGTGCGTGACTGC 62.994 66.667 28.49 0.00 0.00 4.40
1459 1719 5.809051 ACTTGTAAATTAGGACGAATCGGAC 59.191 40.000 7.80 0.00 0.00 4.79
1466 1726 3.916761 ACGCACTTGTAAATTAGGACGA 58.083 40.909 0.00 0.00 0.00 4.20
1467 1727 4.860907 ACTACGCACTTGTAAATTAGGACG 59.139 41.667 0.00 0.00 0.00 4.79
1468 1728 6.021153 CGTACTACGCACTTGTAAATTAGGAC 60.021 42.308 0.00 0.00 33.65 3.85
1480 1743 3.944015 ACCTAATCTCGTACTACGCACTT 59.056 43.478 3.57 0.36 42.21 3.16
1482 1745 3.959573 ACCTAATCTCGTACTACGCAC 57.040 47.619 3.57 0.00 42.21 5.34
1484 1747 5.923684 AGTACTACCTAATCTCGTACTACGC 59.076 44.000 3.57 0.00 42.21 4.42
1486 1749 6.871492 GGGAGTACTACCTAATCTCGTACTAC 59.129 46.154 17.74 0.00 40.39 2.73
1489 1752 5.863965 AGGGAGTACTACCTAATCTCGTAC 58.136 45.833 26.28 0.00 43.72 3.67
1492 1755 4.325972 GGAGGGAGTACTACCTAATCTCG 58.674 52.174 27.44 0.00 46.12 4.04
1493 1756 4.041444 TCGGAGGGAGTACTACCTAATCTC 59.959 50.000 27.44 13.91 46.12 2.75
1494 1757 3.979347 TCGGAGGGAGTACTACCTAATCT 59.021 47.826 27.44 4.30 46.12 2.40
1495 1758 4.363991 TCGGAGGGAGTACTACCTAATC 57.636 50.000 27.44 17.29 46.12 1.75
1498 1761 3.596101 AGATCGGAGGGAGTACTACCTA 58.404 50.000 27.44 12.32 46.12 3.08
1501 1764 4.089408 AGAAGATCGGAGGGAGTACTAC 57.911 50.000 0.00 0.00 0.00 2.73
1502 1765 6.044054 TCAATAGAAGATCGGAGGGAGTACTA 59.956 42.308 0.00 0.00 0.00 1.82
1503 1766 5.074115 CAATAGAAGATCGGAGGGAGTACT 58.926 45.833 0.00 0.00 0.00 2.73
1504 1767 5.071370 TCAATAGAAGATCGGAGGGAGTAC 58.929 45.833 0.00 0.00 0.00 2.73
1505 1768 5.320488 TCAATAGAAGATCGGAGGGAGTA 57.680 43.478 0.00 0.00 0.00 2.59
1506 1769 4.186077 TCAATAGAAGATCGGAGGGAGT 57.814 45.455 0.00 0.00 0.00 3.85
1507 1770 5.736951 AATCAATAGAAGATCGGAGGGAG 57.263 43.478 0.00 0.00 0.00 4.30
1508 1771 8.895141 TTATAATCAATAGAAGATCGGAGGGA 57.105 34.615 0.00 0.00 0.00 4.20
1509 1772 8.972127 TCTTATAATCAATAGAAGATCGGAGGG 58.028 37.037 0.00 0.00 37.02 4.30
1589 1852 9.371136 CGTATCTACTACGTACTCCCATAATAA 57.629 37.037 0.00 0.00 46.46 1.40
1590 1853 8.932945 CGTATCTACTACGTACTCCCATAATA 57.067 38.462 0.00 0.00 46.46 0.98
1591 1854 7.840342 CGTATCTACTACGTACTCCCATAAT 57.160 40.000 0.00 0.00 46.46 1.28
1604 1867 4.874966 AGACACCACACTCGTATCTACTAC 59.125 45.833 0.00 0.00 0.00 2.73
1605 1868 4.874396 CAGACACCACACTCGTATCTACTA 59.126 45.833 0.00 0.00 0.00 1.82
1606 1869 3.690139 CAGACACCACACTCGTATCTACT 59.310 47.826 0.00 0.00 0.00 2.57
1607 1870 3.439476 ACAGACACCACACTCGTATCTAC 59.561 47.826 0.00 0.00 0.00 2.59
1608 1871 3.439129 CACAGACACCACACTCGTATCTA 59.561 47.826 0.00 0.00 0.00 1.98
1609 1872 2.229062 CACAGACACCACACTCGTATCT 59.771 50.000 0.00 0.00 0.00 1.98
1610 1873 2.596452 CACAGACACCACACTCGTATC 58.404 52.381 0.00 0.00 0.00 2.24
1611 1874 1.272490 CCACAGACACCACACTCGTAT 59.728 52.381 0.00 0.00 0.00 3.06
1612 1875 0.671796 CCACAGACACCACACTCGTA 59.328 55.000 0.00 0.00 0.00 3.43
1613 1876 1.441729 CCACAGACACCACACTCGT 59.558 57.895 0.00 0.00 0.00 4.18
1614 1877 1.300931 CCCACAGACACCACACTCG 60.301 63.158 0.00 0.00 0.00 4.18
1615 1878 1.598130 GCCCACAGACACCACACTC 60.598 63.158 0.00 0.00 0.00 3.51
1616 1879 2.510906 GCCCACAGACACCACACT 59.489 61.111 0.00 0.00 0.00 3.55
1658 1921 0.622136 TGATCTGCAGCCACTGGAAT 59.378 50.000 9.47 0.00 30.12 3.01
1686 1949 3.111853 TCAGAAGCGAAGTGTCAACAT 57.888 42.857 0.00 0.00 0.00 2.71
1687 1950 2.595124 TCAGAAGCGAAGTGTCAACA 57.405 45.000 0.00 0.00 0.00 3.33
1688 1951 4.212214 AGAATTCAGAAGCGAAGTGTCAAC 59.788 41.667 8.44 0.00 0.00 3.18
1689 1952 4.212004 CAGAATTCAGAAGCGAAGTGTCAA 59.788 41.667 8.44 0.00 0.00 3.18
1690 1953 3.742882 CAGAATTCAGAAGCGAAGTGTCA 59.257 43.478 8.44 0.00 0.00 3.58
1691 1954 3.990469 TCAGAATTCAGAAGCGAAGTGTC 59.010 43.478 8.44 0.00 0.00 3.67
1692 1955 3.995199 TCAGAATTCAGAAGCGAAGTGT 58.005 40.909 8.44 0.00 0.00 3.55
1693 1956 4.391216 ACATCAGAATTCAGAAGCGAAGTG 59.609 41.667 8.44 1.37 0.00 3.16
1694 1957 4.391216 CACATCAGAATTCAGAAGCGAAGT 59.609 41.667 8.44 0.00 0.00 3.01
1695 1958 4.628766 TCACATCAGAATTCAGAAGCGAAG 59.371 41.667 8.44 0.00 0.00 3.79
1696 1959 4.568956 TCACATCAGAATTCAGAAGCGAA 58.431 39.130 8.44 0.00 0.00 4.70
1697 1960 4.192429 TCACATCAGAATTCAGAAGCGA 57.808 40.909 8.44 0.00 0.00 4.93
1698 1961 6.594284 TTATCACATCAGAATTCAGAAGCG 57.406 37.500 8.44 0.00 0.00 4.68
1702 1965 9.939802 CAGGATATTATCACATCAGAATTCAGA 57.060 33.333 8.44 5.51 0.00 3.27
1703 1966 8.666573 GCAGGATATTATCACATCAGAATTCAG 58.333 37.037 8.44 0.00 0.00 3.02
1704 1967 8.380867 AGCAGGATATTATCACATCAGAATTCA 58.619 33.333 8.44 0.00 0.00 2.57
1705 1968 8.789825 AGCAGGATATTATCACATCAGAATTC 57.210 34.615 6.04 0.00 0.00 2.17
1706 1969 9.011095 CAAGCAGGATATTATCACATCAGAATT 57.989 33.333 6.04 0.00 0.00 2.17
1707 1970 8.380867 TCAAGCAGGATATTATCACATCAGAAT 58.619 33.333 6.04 0.00 0.00 2.40
1708 1971 7.738847 TCAAGCAGGATATTATCACATCAGAA 58.261 34.615 6.04 0.00 0.00 3.02
1709 1972 7.307131 TCAAGCAGGATATTATCACATCAGA 57.693 36.000 6.04 0.00 0.00 3.27
1710 1973 7.414208 GCATCAAGCAGGATATTATCACATCAG 60.414 40.741 6.04 0.00 44.79 2.90
1711 1974 6.373495 GCATCAAGCAGGATATTATCACATCA 59.627 38.462 6.04 0.00 44.79 3.07
1712 1975 6.456584 CGCATCAAGCAGGATATTATCACATC 60.457 42.308 6.04 0.00 46.13 3.06
1713 1976 5.353400 CGCATCAAGCAGGATATTATCACAT 59.647 40.000 6.04 0.00 46.13 3.21
1714 1977 4.692155 CGCATCAAGCAGGATATTATCACA 59.308 41.667 6.04 0.00 46.13 3.58
1715 1978 4.692625 ACGCATCAAGCAGGATATTATCAC 59.307 41.667 6.04 0.00 46.13 3.06
1716 1979 4.898320 ACGCATCAAGCAGGATATTATCA 58.102 39.130 6.04 0.00 46.13 2.15
1717 1980 4.032217 CGACGCATCAAGCAGGATATTATC 59.968 45.833 0.00 0.00 46.13 1.75
1718 1981 3.928992 CGACGCATCAAGCAGGATATTAT 59.071 43.478 0.00 0.00 46.13 1.28
1719 1982 3.317150 CGACGCATCAAGCAGGATATTA 58.683 45.455 0.00 0.00 46.13 0.98
1720 1983 2.138320 CGACGCATCAAGCAGGATATT 58.862 47.619 0.00 0.00 46.13 1.28
1721 1984 1.606480 CCGACGCATCAAGCAGGATAT 60.606 52.381 0.00 0.00 46.13 1.63
1722 1985 0.249447 CCGACGCATCAAGCAGGATA 60.249 55.000 0.00 0.00 46.13 2.59
1723 1986 1.522355 CCGACGCATCAAGCAGGAT 60.522 57.895 0.00 0.00 46.13 3.24
1724 1987 2.125552 CCGACGCATCAAGCAGGA 60.126 61.111 0.00 0.00 46.13 3.86
1725 1988 2.034879 AACCGACGCATCAAGCAGG 61.035 57.895 0.00 0.00 46.13 4.85
1726 1989 1.133253 CAACCGACGCATCAAGCAG 59.867 57.895 0.00 0.00 46.13 4.24
1727 1990 2.324330 CCAACCGACGCATCAAGCA 61.324 57.895 0.00 0.00 46.13 3.91
1728 1991 2.325082 ACCAACCGACGCATCAAGC 61.325 57.895 0.00 0.00 40.87 4.01
1729 1992 1.497278 CACCAACCGACGCATCAAG 59.503 57.895 0.00 0.00 0.00 3.02
1735 1998 2.589442 TTGTCCACCAACCGACGC 60.589 61.111 0.00 0.00 0.00 5.19
1736 1999 0.531090 TTCTTGTCCACCAACCGACG 60.531 55.000 0.00 0.00 0.00 5.12
1757 2020 4.887748 GCAGAAGTGGATAAGCTGCTATA 58.112 43.478 0.90 0.00 46.17 1.31
1758 2021 3.737850 GCAGAAGTGGATAAGCTGCTAT 58.262 45.455 0.90 0.00 46.17 2.97
1776 2039 5.666462 TGTCTACTGTCTAGTCTAGAGCAG 58.334 45.833 23.73 23.73 38.61 4.24
1795 2070 1.708993 TTGGCTCCACTTGGCTGTCT 61.709 55.000 0.00 0.00 34.44 3.41
1796 2071 0.610232 ATTGGCTCCACTTGGCTGTC 60.610 55.000 0.00 0.00 34.44 3.51
1797 2072 0.610232 GATTGGCTCCACTTGGCTGT 60.610 55.000 0.00 0.00 34.44 4.40
1798 2073 1.651240 CGATTGGCTCCACTTGGCTG 61.651 60.000 0.00 0.00 34.44 4.85
1799 2074 1.377725 CGATTGGCTCCACTTGGCT 60.378 57.895 0.00 0.00 34.44 4.75
1800 2075 0.960364 TTCGATTGGCTCCACTTGGC 60.960 55.000 0.00 0.00 34.44 4.52
1801 2076 1.755179 ATTCGATTGGCTCCACTTGG 58.245 50.000 0.00 0.00 0.00 3.61
1802 2077 3.499918 GGATATTCGATTGGCTCCACTTG 59.500 47.826 0.00 0.00 0.00 3.16
1803 2078 3.744660 GGATATTCGATTGGCTCCACTT 58.255 45.455 0.00 0.00 0.00 3.16
1804 2079 2.289072 CGGATATTCGATTGGCTCCACT 60.289 50.000 0.00 0.00 0.00 4.00
1805 2080 2.069273 CGGATATTCGATTGGCTCCAC 58.931 52.381 0.00 0.00 0.00 4.02
1806 2081 1.001974 CCGGATATTCGATTGGCTCCA 59.998 52.381 4.54 0.00 0.00 3.86
1810 2085 2.288825 TGAGACCGGATATTCGATTGGC 60.289 50.000 9.46 0.00 0.00 4.52
1863 2139 1.609061 CGCACAGGTCAAAGATCTGGT 60.609 52.381 11.57 0.00 44.32 4.00
1904 2181 8.267620 TGATCTTCTGGTTTCATATAGATGGT 57.732 34.615 0.00 0.00 33.49 3.55
1943 2220 3.906846 AGTTCAGGTAGGGATGGATGATC 59.093 47.826 0.00 0.00 0.00 2.92
1978 2255 4.141937 ACATGGATCGTATATATGCCGCTT 60.142 41.667 0.00 0.00 0.00 4.68
2006 2283 2.126307 CCAGTCGCCGTCTGTGAG 60.126 66.667 10.28 0.00 33.18 3.51
2011 2288 1.183549 AGATTAACCAGTCGCCGTCT 58.816 50.000 0.00 0.00 0.00 4.18
2017 2294 9.077674 GCATGATAATACTAGATTAACCAGTCG 57.922 37.037 0.00 0.00 0.00 4.18
2046 2326 0.908910 TCCAACCAGTGTGTGTCTGT 59.091 50.000 0.00 0.00 0.00 3.41
2047 2327 1.586422 CTCCAACCAGTGTGTGTCTG 58.414 55.000 0.00 0.00 0.00 3.51
2049 2329 0.468226 TCCTCCAACCAGTGTGTGTC 59.532 55.000 0.00 0.00 0.00 3.67
2067 2347 5.786401 AACAATACTTTGCTCGAGATGTC 57.214 39.130 18.75 0.00 36.22 3.06
2162 2442 7.234355 AGTCTGACTTGTCCCTTCATTATTTT 58.766 34.615 4.06 0.00 0.00 1.82
2170 2451 1.971357 TGGAGTCTGACTTGTCCCTTC 59.029 52.381 12.27 0.00 0.00 3.46
2183 2464 6.142498 ACAAGAAGATATGGATCTGGAGTCT 58.858 40.000 0.00 0.00 41.87 3.24
2185 2466 6.041865 CAGACAAGAAGATATGGATCTGGAGT 59.958 42.308 0.00 0.00 41.87 3.85
2302 2592 0.466124 GGTGGGCTAGTCACTCATCC 59.534 60.000 14.74 0.00 35.61 3.51
2316 2606 6.269077 ACTTAAAGGACCAAAATTAAGGTGGG 59.731 38.462 16.69 0.00 38.86 4.61
2346 2636 5.567430 TCTAGACTGCAAAGTACTCCAGTA 58.433 41.667 18.23 7.99 38.55 2.74
2349 2639 4.587262 TGTTCTAGACTGCAAAGTACTCCA 59.413 41.667 0.00 0.00 0.00 3.86
2350 2640 5.135508 TGTTCTAGACTGCAAAGTACTCC 57.864 43.478 0.00 0.00 0.00 3.85
2351 2641 6.401581 GCATTGTTCTAGACTGCAAAGTACTC 60.402 42.308 0.00 0.00 31.64 2.59
2352 2642 5.409826 GCATTGTTCTAGACTGCAAAGTACT 59.590 40.000 0.00 0.00 31.64 2.73
2353 2643 5.179368 TGCATTGTTCTAGACTGCAAAGTAC 59.821 40.000 13.25 0.00 36.75 2.73
2407 2883 2.282745 GAGCCAGGTTGCCAGCTT 60.283 61.111 4.60 0.00 35.92 3.74
2413 2938 4.742201 TCGAGCGAGCCAGGTTGC 62.742 66.667 0.65 0.65 0.00 4.17
2465 2990 7.284074 TCAGGTTTGTTAACAGTTAAGGATCA 58.716 34.615 8.56 0.00 35.92 2.92
2492 3017 7.843490 AAATAAGCAGAGTAAATCGTAAGCA 57.157 32.000 0.00 0.00 37.18 3.91
2533 3058 4.108699 TGCTTGTTTTGGCTGTATATGC 57.891 40.909 0.00 0.00 0.00 3.14
2534 3059 4.505191 GCATGCTTGTTTTGGCTGTATATG 59.495 41.667 11.37 0.00 0.00 1.78
2535 3060 4.160065 TGCATGCTTGTTTTGGCTGTATAT 59.840 37.500 20.33 0.00 0.00 0.86
2557 3082 9.703892 TGTTGGTAATGTTCCTATTTCATTTTG 57.296 29.630 0.00 0.00 34.35 2.44
2573 3098 9.051679 TGACGGATAAGAAATATGTTGGTAATG 57.948 33.333 0.00 0.00 0.00 1.90
2576 3101 7.788026 ACTGACGGATAAGAAATATGTTGGTA 58.212 34.615 0.00 0.00 0.00 3.25
2631 3156 3.325870 TCACTTATTCACACAGGAAGCG 58.674 45.455 0.00 0.00 0.00 4.68
2664 3189 2.337849 TGCTGGCCTGGATCATACATA 58.662 47.619 12.06 0.00 0.00 2.29
2754 3279 8.879759 GGAATACAGTTGTCGATTTATCTGAAA 58.120 33.333 11.02 0.00 0.00 2.69
2780 3306 4.272504 TGAGTTCAAGAGGTACTTTTTGCG 59.727 41.667 3.62 0.00 41.55 4.85
2782 3308 5.529060 AGCTGAGTTCAAGAGGTACTTTTTG 59.471 40.000 2.18 2.18 41.55 2.44
2802 3333 0.609957 TGTTGAATGGGCCTGAGCTG 60.610 55.000 4.53 0.00 39.73 4.24
2822 3353 3.073062 AGTTGTTGCTACTTCCTCATGGT 59.927 43.478 0.00 0.00 34.23 3.55
2861 3392 6.847421 TTAGTTTACAGAGGGAGTACTTCC 57.153 41.667 12.91 12.91 46.00 3.46
2867 3398 9.939424 ACTCTTATATTAGTTTACAGAGGGAGT 57.061 33.333 0.00 0.00 32.21 3.85
2869 3400 9.710818 ACACTCTTATATTAGTTTACAGAGGGA 57.289 33.333 2.59 0.00 34.50 4.20
2916 3447 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
2917 3448 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
2918 3449 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
2919 3450 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
2920 3451 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
2921 3452 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
2922 3453 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
2923 3454 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
2924 3455 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
2925 3456 8.636213 CAACTCCCTCCGTAAACTAATATAAGA 58.364 37.037 0.00 0.00 0.00 2.10
2926 3457 8.419442 ACAACTCCCTCCGTAAACTAATATAAG 58.581 37.037 0.00 0.00 0.00 1.73
2927 3458 8.310122 ACAACTCCCTCCGTAAACTAATATAA 57.690 34.615 0.00 0.00 0.00 0.98
2928 3459 7.902920 ACAACTCCCTCCGTAAACTAATATA 57.097 36.000 0.00 0.00 0.00 0.86
2929 3460 6.803366 ACAACTCCCTCCGTAAACTAATAT 57.197 37.500 0.00 0.00 0.00 1.28
2930 3461 7.716799 TTACAACTCCCTCCGTAAACTAATA 57.283 36.000 0.00 0.00 0.00 0.98
2931 3462 6.610075 TTACAACTCCCTCCGTAAACTAAT 57.390 37.500 0.00 0.00 0.00 1.73
2932 3463 6.418057 TTTACAACTCCCTCCGTAAACTAA 57.582 37.500 0.00 0.00 30.89 2.24
2933 3464 6.610075 ATTTACAACTCCCTCCGTAAACTA 57.390 37.500 0.00 0.00 36.83 2.24
2934 3465 4.961438 TTTACAACTCCCTCCGTAAACT 57.039 40.909 0.00 0.00 30.89 2.66
2935 3466 6.376177 CAAATTTACAACTCCCTCCGTAAAC 58.624 40.000 0.00 0.00 36.83 2.01
2936 3467 5.474189 CCAAATTTACAACTCCCTCCGTAAA 59.526 40.000 0.00 0.00 37.99 2.01
2937 3468 5.005094 CCAAATTTACAACTCCCTCCGTAA 58.995 41.667 0.00 0.00 0.00 3.18
2938 3469 4.041938 ACCAAATTTACAACTCCCTCCGTA 59.958 41.667 0.00 0.00 0.00 4.02
2939 3470 3.181437 ACCAAATTTACAACTCCCTCCGT 60.181 43.478 0.00 0.00 0.00 4.69
2940 3471 3.418047 ACCAAATTTACAACTCCCTCCG 58.582 45.455 0.00 0.00 0.00 4.63
2941 3472 6.904463 TTTACCAAATTTACAACTCCCTCC 57.096 37.500 0.00 0.00 0.00 4.30
2999 3558 1.736126 CATGTTTGCGATCTCAGTGCT 59.264 47.619 0.00 0.00 0.00 4.40
3016 3575 3.538591 TGCTTCCTATTGTCTCAGCATG 58.461 45.455 0.00 0.00 32.38 4.06
3024 3583 8.894768 AAAGACAGTATATGCTTCCTATTGTC 57.105 34.615 0.00 0.00 34.27 3.18
3051 3610 1.337118 ATGCTTCCTTCCCGCAAAAA 58.663 45.000 0.00 0.00 37.20 1.94
3053 3612 2.435372 ATATGCTTCCTTCCCGCAAA 57.565 45.000 0.00 0.00 37.20 3.68
3054 3613 2.438021 AGTATATGCTTCCTTCCCGCAA 59.562 45.455 0.00 0.00 37.20 4.85
3055 3614 2.047061 AGTATATGCTTCCTTCCCGCA 58.953 47.619 0.00 0.00 38.14 5.69
3056 3615 2.224305 ACAGTATATGCTTCCTTCCCGC 60.224 50.000 0.00 0.00 0.00 6.13
3057 3616 3.069586 TGACAGTATATGCTTCCTTCCCG 59.930 47.826 0.00 0.00 0.00 5.14
3058 3617 4.141711 TGTGACAGTATATGCTTCCTTCCC 60.142 45.833 0.00 0.00 0.00 3.97
3059 3618 4.811557 GTGTGACAGTATATGCTTCCTTCC 59.188 45.833 0.00 0.00 0.00 3.46
3060 3619 4.811557 GGTGTGACAGTATATGCTTCCTTC 59.188 45.833 0.00 0.00 0.00 3.46
3061 3620 4.471386 AGGTGTGACAGTATATGCTTCCTT 59.529 41.667 0.00 0.00 0.00 3.36
3062 3621 4.033709 AGGTGTGACAGTATATGCTTCCT 58.966 43.478 0.00 0.00 0.00 3.36
3063 3622 4.122776 CAGGTGTGACAGTATATGCTTCC 58.877 47.826 0.00 0.00 0.00 3.46
3066 3625 2.501316 TGCAGGTGTGACAGTATATGCT 59.499 45.455 8.26 0.00 33.68 3.79
3067 3626 2.905075 TGCAGGTGTGACAGTATATGC 58.095 47.619 0.00 0.00 0.00 3.14
3068 3627 5.640783 CCATATGCAGGTGTGACAGTATATG 59.359 44.000 11.66 11.66 0.00 1.78
3070 3629 4.898861 TCCATATGCAGGTGTGACAGTATA 59.101 41.667 0.00 0.00 0.00 1.47
3124 3735 1.936880 GCTCGATCAGCGTCGTCTG 60.937 63.158 9.51 9.51 42.07 3.51
3276 3887 2.915659 TTCGCCGGGTCAGTGAGT 60.916 61.111 2.18 0.00 0.00 3.41
3318 3929 0.833287 TCTCATAGAGCTGGGTTGCC 59.167 55.000 0.00 0.00 0.00 4.52
3537 4341 3.056328 GCCTCGGCAGGTTCAACC 61.056 66.667 0.00 0.00 42.74 3.77
3552 4356 2.417243 GCCACCATTCAGTACATTTGCC 60.417 50.000 0.00 0.00 0.00 4.52
3650 4468 6.423302 CAGTTAGCAACATGATTAGGAGCTAG 59.577 42.308 0.00 0.00 34.95 3.42
3654 4472 6.037610 GGTTCAGTTAGCAACATGATTAGGAG 59.962 42.308 0.00 0.00 0.00 3.69
3750 4568 1.912043 ACCTCCAGAACCTTCTCCATG 59.088 52.381 0.00 0.00 34.74 3.66
3786 4609 9.389755 AGAATCTATTCTACCAAAAGAAGAAGC 57.610 33.333 3.36 0.00 44.80 3.86
3827 4652 5.476254 TCACCTGTCAATTACATGCATGAAA 59.524 36.000 32.75 17.10 37.50 2.69
4087 4962 0.179081 GTACCACGATGAGCTTCCCC 60.179 60.000 0.00 0.00 0.00 4.81
4318 5198 4.672413 GCAGTGAATTTATTCTACATGCGC 59.328 41.667 0.00 0.00 37.67 6.09
4401 5287 7.040062 CCATTTCAACCATTGTTTACAGAGGTA 60.040 37.037 8.21 0.00 34.96 3.08
4444 5337 7.611079 CATGTACATCATAGATCTCCAGAGAGA 59.389 40.741 5.07 0.00 43.15 3.10
4600 5902 1.071385 AGTGCAGGAACCACTCAGAAG 59.929 52.381 0.00 0.00 39.19 2.85
4644 5946 5.845953 CGTTATGTTTGTTGAGTGTGTGATC 59.154 40.000 0.00 0.00 0.00 2.92
4767 6071 7.197398 TGCTTTCAGCGATTCCTATTAACGC 62.197 44.000 0.00 0.00 46.26 4.84
4900 6221 2.957402 AAGGTCAATCCACAAGAGCA 57.043 45.000 0.00 0.00 39.02 4.26
4996 6317 9.270640 GCAGATCTGAATCTAAATGTAGAACAT 57.729 33.333 27.04 0.00 40.38 2.71
5009 6330 5.065613 ACTAGAGAGGCAGATCTGAATCT 57.934 43.478 27.04 24.62 43.24 2.40
5033 6354 4.442706 CTCGCCACACCTTACATTTATCT 58.557 43.478 0.00 0.00 0.00 1.98
5049 6370 1.748879 GTTAATGCCAGCCTCGCCA 60.749 57.895 0.00 0.00 0.00 5.69
5083 6404 5.782893 TGTCCTTGTTAGGTTTTGGATTG 57.217 39.130 0.00 0.00 42.60 2.67
5152 6477 6.469410 TCCTGACTTTCGGTTGTATTACAAT 58.531 36.000 12.16 0.00 40.59 2.71
5195 6520 6.866770 CCACGAGTAGAAACACAATTTCTCTA 59.133 38.462 5.22 0.00 39.30 2.43
5203 6528 2.101750 TGCTCCACGAGTAGAAACACAA 59.898 45.455 0.00 0.00 31.39 3.33
5210 6535 5.339008 AATTGTATTGCTCCACGAGTAGA 57.661 39.130 0.00 0.00 31.39 2.59
5211 6536 5.351465 ACAAATTGTATTGCTCCACGAGTAG 59.649 40.000 0.00 0.00 33.52 2.57
5216 6541 4.165779 GGAACAAATTGTATTGCTCCACG 58.834 43.478 8.47 0.00 42.51 4.94
5261 6586 7.759489 ATTTTCATGGCAGAACTAGTTAACA 57.241 32.000 8.42 5.85 0.00 2.41
5276 6603 5.722263 TGTGGAATGTGCTTATTTTCATGG 58.278 37.500 0.00 0.00 0.00 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.