Multiple sequence alignment - TraesCS5A01G300300
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5A01G300300 | chr5A | 100.000 | 4513 | 0 | 0 | 1 | 4513 | 509648765 | 509653277 | 0.000000e+00 | 8335.0 |
1 | TraesCS5A01G300300 | chr5A | 85.115 | 262 | 28 | 5 | 1394 | 1644 | 599797910 | 599798171 | 1.610000e-64 | 257.0 |
2 | TraesCS5A01G300300 | chr5B | 90.438 | 1485 | 103 | 14 | 2566 | 4022 | 485909941 | 485908468 | 0.000000e+00 | 1919.0 |
3 | TraesCS5A01G300300 | chr5B | 94.915 | 590 | 24 | 2 | 849 | 1435 | 485913460 | 485912874 | 0.000000e+00 | 918.0 |
4 | TraesCS5A01G300300 | chr5B | 89.379 | 612 | 63 | 2 | 1958 | 2567 | 485912072 | 485911461 | 0.000000e+00 | 769.0 |
5 | TraesCS5A01G300300 | chr5B | 93.443 | 366 | 17 | 3 | 1443 | 1801 | 485912824 | 485912459 | 1.850000e-148 | 536.0 |
6 | TraesCS5A01G300300 | chr5B | 93.503 | 354 | 18 | 3 | 4160 | 4513 | 485908233 | 485907885 | 5.170000e-144 | 521.0 |
7 | TraesCS5A01G300300 | chr5B | 82.895 | 380 | 48 | 13 | 387 | 754 | 485913981 | 485913607 | 4.350000e-85 | 326.0 |
8 | TraesCS5A01G300300 | chr5B | 94.309 | 123 | 7 | 0 | 1835 | 1957 | 485912459 | 485912337 | 5.960000e-44 | 189.0 |
9 | TraesCS5A01G300300 | chr5B | 98.913 | 92 | 1 | 0 | 205 | 296 | 485914080 | 485913989 | 1.000000e-36 | 165.0 |
10 | TraesCS5A01G300300 | chr5D | 92.033 | 1318 | 67 | 13 | 1443 | 2756 | 404502148 | 404500865 | 0.000000e+00 | 1818.0 |
11 | TraesCS5A01G300300 | chr5D | 88.583 | 1270 | 74 | 27 | 2776 | 4022 | 404499530 | 404498309 | 0.000000e+00 | 1476.0 |
12 | TraesCS5A01G300300 | chr5D | 94.799 | 596 | 21 | 2 | 849 | 1435 | 404502793 | 404502199 | 0.000000e+00 | 920.0 |
13 | TraesCS5A01G300300 | chr5D | 87.193 | 570 | 50 | 19 | 202 | 754 | 404503502 | 404502939 | 1.070000e-175 | 627.0 |
14 | TraesCS5A01G300300 | chr5D | 92.130 | 216 | 15 | 2 | 4020 | 4234 | 404497936 | 404497722 | 2.040000e-78 | 303.0 |
15 | TraesCS5A01G300300 | chr5D | 90.291 | 206 | 16 | 2 | 1443 | 1644 | 480700062 | 480700267 | 2.680000e-67 | 267.0 |
16 | TraesCS5A01G300300 | chr5D | 88.835 | 206 | 19 | 2 | 1443 | 1644 | 511472578 | 511472783 | 2.700000e-62 | 250.0 |
17 | TraesCS5A01G300300 | chr5D | 88.462 | 208 | 22 | 1 | 4 | 211 | 528851938 | 528851733 | 2.700000e-62 | 250.0 |
18 | TraesCS5A01G300300 | chr5D | 85.385 | 130 | 17 | 1 | 4 | 133 | 501357877 | 501358004 | 2.830000e-27 | 134.0 |
19 | TraesCS5A01G300300 | chr7D | 84.615 | 403 | 50 | 7 | 452 | 843 | 607213976 | 607214377 | 1.520000e-104 | 390.0 |
20 | TraesCS5A01G300300 | chr7D | 81.265 | 411 | 59 | 10 | 451 | 846 | 30245332 | 30244925 | 2.620000e-82 | 316.0 |
21 | TraesCS5A01G300300 | chr7D | 89.855 | 207 | 18 | 3 | 4 | 208 | 501024833 | 501025038 | 3.460000e-66 | 263.0 |
22 | TraesCS5A01G300300 | chr7D | 89.320 | 206 | 18 | 2 | 1443 | 1644 | 620849530 | 620849735 | 5.790000e-64 | 255.0 |
23 | TraesCS5A01G300300 | chr7D | 82.011 | 189 | 23 | 4 | 669 | 847 | 56617061 | 56616874 | 2.810000e-32 | 150.0 |
24 | TraesCS5A01G300300 | chr2B | 82.544 | 401 | 50 | 14 | 459 | 843 | 137261519 | 137261123 | 7.230000e-88 | 335.0 |
25 | TraesCS5A01G300300 | chr2B | 80.377 | 265 | 36 | 13 | 3061 | 3317 | 10775710 | 10775454 | 2.140000e-43 | 187.0 |
26 | TraesCS5A01G300300 | chr2B | 81.538 | 195 | 31 | 3 | 2370 | 2564 | 11226609 | 11226420 | 6.040000e-34 | 156.0 |
27 | TraesCS5A01G300300 | chr2B | 87.302 | 126 | 16 | 0 | 2438 | 2563 | 11173140 | 11173015 | 1.310000e-30 | 145.0 |
28 | TraesCS5A01G300300 | chr6B | 82.064 | 407 | 53 | 11 | 453 | 843 | 159399469 | 159399871 | 3.370000e-86 | 329.0 |
29 | TraesCS5A01G300300 | chr6B | 85.517 | 145 | 17 | 2 | 3882 | 4022 | 49615581 | 49615437 | 1.010000e-31 | 148.0 |
30 | TraesCS5A01G300300 | chr7B | 81.679 | 393 | 58 | 11 | 459 | 843 | 5266355 | 5265969 | 9.420000e-82 | 315.0 |
31 | TraesCS5A01G300300 | chr4A | 80.976 | 410 | 57 | 11 | 460 | 849 | 16476973 | 16477381 | 5.670000e-79 | 305.0 |
32 | TraesCS5A01G300300 | chr7A | 93.627 | 204 | 12 | 1 | 4 | 207 | 629017960 | 629017758 | 2.040000e-78 | 303.0 |
33 | TraesCS5A01G300300 | chr7A | 93.171 | 205 | 12 | 2 | 4 | 206 | 118571695 | 118571899 | 2.640000e-77 | 300.0 |
34 | TraesCS5A01G300300 | chr4D | 80.732 | 410 | 59 | 13 | 452 | 843 | 15347805 | 15347398 | 7.340000e-78 | 302.0 |
35 | TraesCS5A01G300300 | chr2D | 93.171 | 205 | 12 | 1 | 4 | 206 | 558187170 | 558187374 | 2.640000e-77 | 300.0 |
36 | TraesCS5A01G300300 | chr2D | 89.202 | 213 | 17 | 4 | 1443 | 1649 | 42209747 | 42209535 | 1.250000e-65 | 261.0 |
37 | TraesCS5A01G300300 | chr2D | 84.783 | 230 | 19 | 6 | 3374 | 3591 | 683760 | 683985 | 2.730000e-52 | 217.0 |
38 | TraesCS5A01G300300 | chr2D | 81.481 | 216 | 29 | 4 | 2349 | 2564 | 8479540 | 8479336 | 2.790000e-37 | 167.0 |
39 | TraesCS5A01G300300 | chr3D | 92.754 | 207 | 13 | 2 | 4 | 208 | 550555821 | 550556027 | 9.490000e-77 | 298.0 |
40 | TraesCS5A01G300300 | chr3D | 89.202 | 213 | 17 | 4 | 1443 | 1649 | 26967988 | 26967776 | 1.250000e-65 | 261.0 |
41 | TraesCS5A01G300300 | chr6A | 92.647 | 204 | 13 | 1 | 4 | 205 | 91908566 | 91908363 | 4.420000e-75 | 292.0 |
42 | TraesCS5A01G300300 | chr2A | 90.594 | 202 | 17 | 1 | 4 | 205 | 117525676 | 117525477 | 2.680000e-67 | 267.0 |
43 | TraesCS5A01G300300 | chr2A | 86.207 | 145 | 16 | 2 | 3882 | 4022 | 13031463 | 13031607 | 2.170000e-33 | 154.0 |
44 | TraesCS5A01G300300 | chr2A | 92.105 | 38 | 3 | 0 | 4158 | 4195 | 536933 | 536970 | 2.000000e-03 | 54.7 |
45 | TraesCS5A01G300300 | chr4B | 90.594 | 202 | 14 | 3 | 4 | 205 | 165827525 | 165827721 | 3.460000e-66 | 263.0 |
46 | TraesCS5A01G300300 | chr6D | 80.052 | 381 | 53 | 17 | 466 | 833 | 438157201 | 438157571 | 1.250000e-65 | 261.0 |
47 | TraesCS5A01G300300 | chr1D | 88.732 | 213 | 18 | 4 | 1443 | 1649 | 31007846 | 31007634 | 5.790000e-64 | 255.0 |
48 | TraesCS5A01G300300 | chr1D | 85.385 | 130 | 17 | 2 | 4 | 133 | 12289154 | 12289281 | 2.830000e-27 | 134.0 |
49 | TraesCS5A01G300300 | chr1A | 83.732 | 209 | 28 | 6 | 4 | 212 | 382734863 | 382735065 | 4.610000e-45 | 193.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5A01G300300 | chr5A | 509648765 | 509653277 | 4512 | False | 8335.000 | 8335 | 100.000000 | 1 | 4513 | 1 | chr5A.!!$F1 | 4512 |
1 | TraesCS5A01G300300 | chr5B | 485907885 | 485914080 | 6195 | True | 667.875 | 1919 | 92.224375 | 205 | 4513 | 8 | chr5B.!!$R1 | 4308 |
2 | TraesCS5A01G300300 | chr5D | 404497722 | 404503502 | 5780 | True | 1028.800 | 1818 | 90.947600 | 202 | 4234 | 5 | chr5D.!!$R2 | 4032 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
199 | 200 | 0.032952 | GGCAACACACGGACAGTCTA | 59.967 | 55.0 | 0.00 | 0.0 | 0.00 | 2.59 | F |
843 | 898 | 0.322546 | GGGCACCGAGTTGGATTTCT | 60.323 | 55.0 | 2.42 | 0.0 | 40.86 | 2.52 | F |
1231 | 1318 | 0.036765 | ATTTCTTACCGTCGCTGGCA | 60.037 | 50.0 | 0.00 | 0.0 | 0.00 | 4.92 | F |
2087 | 2489 | 0.108424 | CTCCTGCTTTCTCCACCGAG | 60.108 | 60.0 | 0.00 | 0.0 | 37.48 | 4.63 | F |
3351 | 6602 | 0.396556 | TATCGGCTGTAGTCCTGGCA | 60.397 | 55.0 | 0.00 | 0.0 | 37.41 | 4.92 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1231 | 1318 | 0.389391 | CGTATTCACCTGGCGGAGAT | 59.611 | 55.0 | 0.00 | 0.0 | 29.70 | 2.75 | R |
2067 | 2469 | 0.541998 | TCGGTGGAGAAAGCAGGAGA | 60.542 | 55.0 | 0.00 | 0.0 | 0.00 | 3.71 | R |
3083 | 6334 | 1.162181 | CGGCACCATGGCAGTATCAG | 61.162 | 60.0 | 13.04 | 0.0 | 43.94 | 2.90 | R |
3500 | 6751 | 0.178958 | GGGGAGGCTAGAGATTCCGA | 60.179 | 60.0 | 0.00 | 0.0 | 0.00 | 4.55 | R |
4188 | 7843 | 1.452145 | CCCTGGTGTTTGGTCCAACG | 61.452 | 60.0 | 2.98 | 0.0 | 33.06 | 4.10 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
25 | 26 | 7.833285 | ATTGTTTGTGTACCACCTTCTTTAT | 57.167 | 32.000 | 0.00 | 0.00 | 32.73 | 1.40 |
26 | 27 | 7.648039 | TTGTTTGTGTACCACCTTCTTTATT | 57.352 | 32.000 | 0.00 | 0.00 | 32.73 | 1.40 |
27 | 28 | 7.648039 | TGTTTGTGTACCACCTTCTTTATTT | 57.352 | 32.000 | 0.00 | 0.00 | 32.73 | 1.40 |
28 | 29 | 8.068892 | TGTTTGTGTACCACCTTCTTTATTTT | 57.931 | 30.769 | 0.00 | 0.00 | 32.73 | 1.82 |
29 | 30 | 7.976734 | TGTTTGTGTACCACCTTCTTTATTTTG | 59.023 | 33.333 | 0.00 | 0.00 | 32.73 | 2.44 |
30 | 31 | 7.648039 | TTGTGTACCACCTTCTTTATTTTGT | 57.352 | 32.000 | 0.00 | 0.00 | 32.73 | 2.83 |
31 | 32 | 7.033530 | TGTGTACCACCTTCTTTATTTTGTG | 57.966 | 36.000 | 0.00 | 0.00 | 32.73 | 3.33 |
32 | 33 | 5.918576 | GTGTACCACCTTCTTTATTTTGTGC | 59.081 | 40.000 | 0.00 | 0.00 | 0.00 | 4.57 |
33 | 34 | 5.594725 | TGTACCACCTTCTTTATTTTGTGCA | 59.405 | 36.000 | 0.00 | 0.00 | 0.00 | 4.57 |
34 | 35 | 5.806654 | ACCACCTTCTTTATTTTGTGCAT | 57.193 | 34.783 | 0.00 | 0.00 | 0.00 | 3.96 |
35 | 36 | 5.783111 | ACCACCTTCTTTATTTTGTGCATC | 58.217 | 37.500 | 0.00 | 0.00 | 0.00 | 3.91 |
36 | 37 | 5.304101 | ACCACCTTCTTTATTTTGTGCATCA | 59.696 | 36.000 | 0.00 | 0.00 | 0.00 | 3.07 |
37 | 38 | 5.865552 | CCACCTTCTTTATTTTGTGCATCAG | 59.134 | 40.000 | 0.00 | 0.00 | 0.00 | 2.90 |
38 | 39 | 5.865552 | CACCTTCTTTATTTTGTGCATCAGG | 59.134 | 40.000 | 0.00 | 0.00 | 0.00 | 3.86 |
39 | 40 | 5.539955 | ACCTTCTTTATTTTGTGCATCAGGT | 59.460 | 36.000 | 0.00 | 0.00 | 0.00 | 4.00 |
40 | 41 | 5.865552 | CCTTCTTTATTTTGTGCATCAGGTG | 59.134 | 40.000 | 0.00 | 0.00 | 0.00 | 4.00 |
41 | 42 | 6.403866 | TTCTTTATTTTGTGCATCAGGTGT | 57.596 | 33.333 | 0.00 | 0.00 | 0.00 | 4.16 |
42 | 43 | 7.309133 | CCTTCTTTATTTTGTGCATCAGGTGTA | 60.309 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
43 | 44 | 7.701539 | TCTTTATTTTGTGCATCAGGTGTAT | 57.298 | 32.000 | 0.00 | 0.00 | 0.00 | 2.29 |
44 | 45 | 8.800370 | TCTTTATTTTGTGCATCAGGTGTATA | 57.200 | 30.769 | 0.00 | 0.00 | 0.00 | 1.47 |
45 | 46 | 8.892723 | TCTTTATTTTGTGCATCAGGTGTATAG | 58.107 | 33.333 | 0.00 | 0.00 | 0.00 | 1.31 |
46 | 47 | 7.566760 | TTATTTTGTGCATCAGGTGTATAGG | 57.433 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
47 | 48 | 3.558931 | TTGTGCATCAGGTGTATAGGG | 57.441 | 47.619 | 0.00 | 0.00 | 0.00 | 3.53 |
48 | 49 | 2.477245 | TGTGCATCAGGTGTATAGGGT | 58.523 | 47.619 | 0.00 | 0.00 | 0.00 | 4.34 |
49 | 50 | 2.434336 | TGTGCATCAGGTGTATAGGGTC | 59.566 | 50.000 | 0.00 | 0.00 | 0.00 | 4.46 |
50 | 51 | 1.686587 | TGCATCAGGTGTATAGGGTCG | 59.313 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
51 | 52 | 1.961394 | GCATCAGGTGTATAGGGTCGA | 59.039 | 52.381 | 0.00 | 0.00 | 0.00 | 4.20 |
52 | 53 | 2.364324 | GCATCAGGTGTATAGGGTCGAA | 59.636 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
53 | 54 | 3.006967 | GCATCAGGTGTATAGGGTCGAAT | 59.993 | 47.826 | 0.00 | 0.00 | 0.00 | 3.34 |
54 | 55 | 4.503296 | GCATCAGGTGTATAGGGTCGAATT | 60.503 | 45.833 | 0.00 | 0.00 | 0.00 | 2.17 |
55 | 56 | 5.279306 | GCATCAGGTGTATAGGGTCGAATTA | 60.279 | 44.000 | 0.00 | 0.00 | 0.00 | 1.40 |
56 | 57 | 6.574465 | GCATCAGGTGTATAGGGTCGAATTAT | 60.574 | 42.308 | 0.00 | 0.00 | 0.00 | 1.28 |
57 | 58 | 7.363530 | GCATCAGGTGTATAGGGTCGAATTATA | 60.364 | 40.741 | 0.00 | 0.00 | 0.00 | 0.98 |
58 | 59 | 8.528643 | CATCAGGTGTATAGGGTCGAATTATAA | 58.471 | 37.037 | 0.00 | 0.00 | 0.00 | 0.98 |
59 | 60 | 8.481492 | TCAGGTGTATAGGGTCGAATTATAAA | 57.519 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
60 | 61 | 8.926374 | TCAGGTGTATAGGGTCGAATTATAAAA | 58.074 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
61 | 62 | 9.550406 | CAGGTGTATAGGGTCGAATTATAAAAA | 57.450 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
84 | 85 | 7.740519 | AAAAATATCGAAGTACATTGCAAGC | 57.259 | 32.000 | 4.94 | 0.00 | 0.00 | 4.01 |
85 | 86 | 4.715520 | ATATCGAAGTACATTGCAAGCG | 57.284 | 40.909 | 4.94 | 0.64 | 0.00 | 4.68 |
86 | 87 | 2.073117 | TCGAAGTACATTGCAAGCGA | 57.927 | 45.000 | 4.94 | 2.67 | 0.00 | 4.93 |
87 | 88 | 2.409012 | TCGAAGTACATTGCAAGCGAA | 58.591 | 42.857 | 4.94 | 0.00 | 0.00 | 4.70 |
88 | 89 | 3.000041 | TCGAAGTACATTGCAAGCGAAT | 59.000 | 40.909 | 4.94 | 0.00 | 0.00 | 3.34 |
89 | 90 | 3.435327 | TCGAAGTACATTGCAAGCGAATT | 59.565 | 39.130 | 4.94 | 0.00 | 0.00 | 2.17 |
90 | 91 | 4.627900 | TCGAAGTACATTGCAAGCGAATTA | 59.372 | 37.500 | 4.94 | 0.00 | 0.00 | 1.40 |
91 | 92 | 4.957967 | CGAAGTACATTGCAAGCGAATTAG | 59.042 | 41.667 | 4.94 | 0.00 | 0.00 | 1.73 |
92 | 93 | 5.220397 | CGAAGTACATTGCAAGCGAATTAGA | 60.220 | 40.000 | 4.94 | 0.00 | 0.00 | 2.10 |
93 | 94 | 6.510157 | CGAAGTACATTGCAAGCGAATTAGAT | 60.510 | 38.462 | 4.94 | 0.00 | 0.00 | 1.98 |
94 | 95 | 6.683974 | AGTACATTGCAAGCGAATTAGATT | 57.316 | 33.333 | 4.94 | 0.00 | 0.00 | 2.40 |
95 | 96 | 6.719365 | AGTACATTGCAAGCGAATTAGATTC | 58.281 | 36.000 | 4.94 | 0.00 | 35.94 | 2.52 |
96 | 97 | 4.925068 | ACATTGCAAGCGAATTAGATTCC | 58.075 | 39.130 | 4.94 | 0.00 | 35.89 | 3.01 |
97 | 98 | 4.398988 | ACATTGCAAGCGAATTAGATTCCA | 59.601 | 37.500 | 4.94 | 0.00 | 35.89 | 3.53 |
98 | 99 | 5.105797 | ACATTGCAAGCGAATTAGATTCCAA | 60.106 | 36.000 | 4.94 | 0.00 | 35.89 | 3.53 |
99 | 100 | 5.581126 | TTGCAAGCGAATTAGATTCCAAT | 57.419 | 34.783 | 0.00 | 0.00 | 35.89 | 3.16 |
100 | 101 | 5.581126 | TGCAAGCGAATTAGATTCCAATT | 57.419 | 34.783 | 0.00 | 0.00 | 35.89 | 2.32 |
101 | 102 | 6.691754 | TGCAAGCGAATTAGATTCCAATTA | 57.308 | 33.333 | 0.00 | 0.00 | 35.89 | 1.40 |
102 | 103 | 6.494842 | TGCAAGCGAATTAGATTCCAATTAC | 58.505 | 36.000 | 0.00 | 0.00 | 35.89 | 1.89 |
103 | 104 | 6.318648 | TGCAAGCGAATTAGATTCCAATTACT | 59.681 | 34.615 | 0.00 | 0.00 | 35.89 | 2.24 |
104 | 105 | 7.148086 | TGCAAGCGAATTAGATTCCAATTACTT | 60.148 | 33.333 | 0.00 | 0.00 | 35.89 | 2.24 |
105 | 106 | 7.702348 | GCAAGCGAATTAGATTCCAATTACTTT | 59.298 | 33.333 | 0.00 | 0.00 | 35.89 | 2.66 |
106 | 107 | 9.573133 | CAAGCGAATTAGATTCCAATTACTTTT | 57.427 | 29.630 | 0.00 | 0.00 | 35.89 | 2.27 |
136 | 137 | 9.461312 | TTTGTTATTGCCTATCTTTCTATGTGT | 57.539 | 29.630 | 0.00 | 0.00 | 0.00 | 3.72 |
137 | 138 | 8.437360 | TGTTATTGCCTATCTTTCTATGTGTG | 57.563 | 34.615 | 0.00 | 0.00 | 0.00 | 3.82 |
138 | 139 | 8.046708 | TGTTATTGCCTATCTTTCTATGTGTGT | 58.953 | 33.333 | 0.00 | 0.00 | 0.00 | 3.72 |
139 | 140 | 9.542462 | GTTATTGCCTATCTTTCTATGTGTGTA | 57.458 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
142 | 143 | 8.856153 | TTGCCTATCTTTCTATGTGTGTAAAA | 57.144 | 30.769 | 0.00 | 0.00 | 0.00 | 1.52 |
143 | 144 | 9.461312 | TTGCCTATCTTTCTATGTGTGTAAAAT | 57.539 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
144 | 145 | 9.461312 | TGCCTATCTTTCTATGTGTGTAAAATT | 57.539 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
175 | 176 | 8.557869 | TGCAACAAATACAAATTTTCAAATGC | 57.442 | 26.923 | 0.00 | 0.00 | 32.87 | 3.56 |
176 | 177 | 7.646922 | TGCAACAAATACAAATTTTCAAATGCC | 59.353 | 29.630 | 0.00 | 0.00 | 32.87 | 4.40 |
177 | 178 | 7.114670 | GCAACAAATACAAATTTTCAAATGCCC | 59.885 | 33.333 | 0.00 | 0.00 | 32.87 | 5.36 |
178 | 179 | 6.896969 | ACAAATACAAATTTTCAAATGCCCG | 58.103 | 32.000 | 0.00 | 0.00 | 32.87 | 6.13 |
179 | 180 | 6.484977 | ACAAATACAAATTTTCAAATGCCCGT | 59.515 | 30.769 | 0.00 | 0.00 | 32.87 | 5.28 |
180 | 181 | 6.479095 | AATACAAATTTTCAAATGCCCGTG | 57.521 | 33.333 | 0.00 | 0.00 | 0.00 | 4.94 |
181 | 182 | 3.137533 | ACAAATTTTCAAATGCCCGTGG | 58.862 | 40.909 | 0.00 | 0.00 | 0.00 | 4.94 |
182 | 183 | 9.377928 | AAATACAAATTTTCAAATGCCCGTGGC | 62.378 | 37.037 | 7.87 | 7.87 | 39.65 | 5.01 |
196 | 197 | 2.587340 | TGGCAACACACGGACAGT | 59.413 | 55.556 | 0.00 | 0.00 | 46.17 | 3.55 |
197 | 198 | 1.522806 | TGGCAACACACGGACAGTC | 60.523 | 57.895 | 0.00 | 0.00 | 46.17 | 3.51 |
198 | 199 | 1.227556 | GGCAACACACGGACAGTCT | 60.228 | 57.895 | 0.00 | 0.00 | 0.00 | 3.24 |
199 | 200 | 0.032952 | GGCAACACACGGACAGTCTA | 59.967 | 55.000 | 0.00 | 0.00 | 0.00 | 2.59 |
200 | 201 | 1.137513 | GCAACACACGGACAGTCTAC | 58.862 | 55.000 | 0.00 | 0.00 | 0.00 | 2.59 |
296 | 297 | 6.177610 | TGACCATTCACATTAGTTAACTCCC | 58.822 | 40.000 | 12.39 | 0.00 | 0.00 | 4.30 |
299 | 300 | 7.182060 | ACCATTCACATTAGTTAACTCCCAAT | 58.818 | 34.615 | 12.39 | 3.78 | 0.00 | 3.16 |
382 | 387 | 2.553079 | TTTCCACACGAAACAGTTGC | 57.447 | 45.000 | 0.00 | 0.00 | 35.49 | 4.17 |
385 | 390 | 1.400142 | TCCACACGAAACAGTTGCAAG | 59.600 | 47.619 | 0.00 | 0.00 | 0.00 | 4.01 |
388 | 394 | 3.497118 | CACACGAAACAGTTGCAAGAAA | 58.503 | 40.909 | 0.00 | 0.00 | 0.00 | 2.52 |
457 | 468 | 0.481128 | ACGGAGGGGTTTTTGGATGT | 59.519 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
486 | 497 | 1.227205 | CTCCCGAGCTCATCTGCAC | 60.227 | 63.158 | 15.40 | 0.00 | 34.99 | 4.57 |
487 | 498 | 1.674764 | CTCCCGAGCTCATCTGCACT | 61.675 | 60.000 | 15.40 | 0.00 | 34.99 | 4.40 |
489 | 500 | 1.674764 | CCCGAGCTCATCTGCACTCT | 61.675 | 60.000 | 15.40 | 0.00 | 34.99 | 3.24 |
491 | 502 | 0.591994 | CGAGCTCATCTGCACTCTCG | 60.592 | 60.000 | 15.40 | 0.00 | 37.65 | 4.04 |
570 | 587 | 5.474532 | TGGTAGATAATTTGATGCATGAGGC | 59.525 | 40.000 | 2.46 | 0.00 | 45.13 | 4.70 |
584 | 601 | 1.337118 | TGAGGCCCGCTTCAAATTTT | 58.663 | 45.000 | 0.00 | 0.00 | 0.00 | 1.82 |
587 | 604 | 3.250744 | GAGGCCCGCTTCAAATTTTAAC | 58.749 | 45.455 | 0.00 | 0.00 | 0.00 | 2.01 |
589 | 606 | 3.323691 | AGGCCCGCTTCAAATTTTAACTT | 59.676 | 39.130 | 0.00 | 0.00 | 0.00 | 2.66 |
595 | 612 | 7.623297 | GCCCGCTTCAAATTTTAACTTATTTGG | 60.623 | 37.037 | 13.02 | 0.00 | 40.46 | 3.28 |
608 | 625 | 6.380079 | AACTTATTTGGACATCTGAGGAGT | 57.620 | 37.500 | 0.00 | 0.00 | 0.00 | 3.85 |
673 | 691 | 0.464036 | TTCACGCACTGTTCTGACCT | 59.536 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
679 | 697 | 3.244078 | ACGCACTGTTCTGACCTGATTTA | 60.244 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
681 | 699 | 4.033358 | CGCACTGTTCTGACCTGATTTATC | 59.967 | 45.833 | 0.00 | 0.00 | 0.00 | 1.75 |
739 | 758 | 2.151202 | GAAATTGAAGCGGACCTCACA | 58.849 | 47.619 | 0.00 | 0.00 | 0.00 | 3.58 |
741 | 760 | 0.670546 | ATTGAAGCGGACCTCACACG | 60.671 | 55.000 | 0.00 | 0.00 | 0.00 | 4.49 |
750 | 769 | 3.259064 | CGGACCTCACACGTCAAATTAT | 58.741 | 45.455 | 0.00 | 0.00 | 31.55 | 1.28 |
754 | 773 | 6.103997 | GGACCTCACACGTCAAATTATCTAA | 58.896 | 40.000 | 0.00 | 0.00 | 31.55 | 2.10 |
755 | 774 | 6.592607 | GGACCTCACACGTCAAATTATCTAAA | 59.407 | 38.462 | 0.00 | 0.00 | 31.55 | 1.85 |
757 | 776 | 8.385898 | ACCTCACACGTCAAATTATCTAAAAA | 57.614 | 30.769 | 0.00 | 0.00 | 0.00 | 1.94 |
843 | 898 | 0.322546 | GGGCACCGAGTTGGATTTCT | 60.323 | 55.000 | 2.42 | 0.00 | 40.86 | 2.52 |
847 | 902 | 1.064825 | ACCGAGTTGGATTTCTGGGT | 58.935 | 50.000 | 2.42 | 0.00 | 42.00 | 4.51 |
1093 | 1180 | 1.642037 | CGTCTCCGACCGCTACTTCA | 61.642 | 60.000 | 0.00 | 0.00 | 35.63 | 3.02 |
1159 | 1246 | 2.267961 | GGACAGGTAAGCCCCACG | 59.732 | 66.667 | 0.00 | 0.00 | 34.57 | 4.94 |
1170 | 1257 | 2.760385 | CCCCACGTCTCCCCTCTC | 60.760 | 72.222 | 0.00 | 0.00 | 0.00 | 3.20 |
1175 | 1262 | 4.824515 | CGTCTCCCCTCTCCGCCT | 62.825 | 72.222 | 0.00 | 0.00 | 0.00 | 5.52 |
1195 | 1282 | 4.572571 | GGGCCACGGACACAACCA | 62.573 | 66.667 | 4.39 | 0.00 | 0.00 | 3.67 |
1207 | 1294 | 0.804989 | CACAACCAGCCGGATTCTTC | 59.195 | 55.000 | 5.05 | 0.00 | 35.59 | 2.87 |
1231 | 1318 | 0.036765 | ATTTCTTACCGTCGCTGGCA | 60.037 | 50.000 | 0.00 | 0.00 | 0.00 | 4.92 |
1374 | 1461 | 2.032528 | CTGCTTCCAGGGCGTTCA | 59.967 | 61.111 | 0.00 | 0.00 | 35.38 | 3.18 |
1375 | 1462 | 1.600636 | CTGCTTCCAGGGCGTTCAA | 60.601 | 57.895 | 0.00 | 0.00 | 35.38 | 2.69 |
1446 | 1566 | 1.608055 | TGATTCTTGGTGCTGGTGTG | 58.392 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
1447 | 1567 | 0.242017 | GATTCTTGGTGCTGGTGTGC | 59.758 | 55.000 | 0.00 | 0.00 | 0.00 | 4.57 |
1463 | 1593 | 4.830765 | GCATGCAGGACGCCGGTA | 62.831 | 66.667 | 14.21 | 0.00 | 41.33 | 4.02 |
1608 | 1738 | 1.806568 | GTCAGCCAGGACTCGAGAG | 59.193 | 63.158 | 21.68 | 5.72 | 34.92 | 3.20 |
1613 | 1743 | 0.825840 | GCCAGGACTCGAGAGCCTAT | 60.826 | 60.000 | 24.14 | 7.80 | 34.65 | 2.57 |
1659 | 1793 | 6.671779 | TGCTCCCTTGAATTTACCCATATTTT | 59.328 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
1661 | 1795 | 6.883744 | TCCCTTGAATTTACCCATATTTTGC | 58.116 | 36.000 | 0.00 | 0.00 | 0.00 | 3.68 |
1675 | 1812 | 5.967674 | CCATATTTTGCGTCTTGCTAGAAAG | 59.032 | 40.000 | 3.78 | 3.78 | 46.63 | 2.62 |
1680 | 1817 | 3.515630 | TGCGTCTTGCTAGAAAGATCTG | 58.484 | 45.455 | 16.47 | 10.49 | 46.63 | 2.90 |
1792 | 1929 | 3.007635 | TGTATTGCGAAGAGTCTCTCGA | 58.992 | 45.455 | 21.26 | 8.07 | 35.36 | 4.04 |
1801 | 1939 | 4.147306 | CGAAGAGTCTCTCGAAAACTTGTG | 59.853 | 45.833 | 15.35 | 0.00 | 35.36 | 3.33 |
1807 | 1945 | 2.549754 | CTCTCGAAAACTTGTGTGGCAT | 59.450 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
1833 | 1971 | 4.390297 | GCCACTGAATTTGTACTGAGAGAC | 59.610 | 45.833 | 0.00 | 0.00 | 0.00 | 3.36 |
1848 | 1986 | 6.234177 | ACTGAGAGACTTGTTTCAAATAGGG | 58.766 | 40.000 | 0.00 | 0.00 | 0.00 | 3.53 |
1895 | 2033 | 7.520798 | ACTATGAAGAATGCATTGGATTAGGA | 58.479 | 34.615 | 18.59 | 0.00 | 34.81 | 2.94 |
1950 | 2088 | 3.650942 | ACTGGTTACATGTCCTCTGGAAA | 59.349 | 43.478 | 0.00 | 0.00 | 31.38 | 3.13 |
1999 | 2401 | 9.880064 | CTTGCATATCAAAGTGAATATCAAGAG | 57.120 | 33.333 | 0.00 | 0.00 | 33.65 | 2.85 |
2019 | 2421 | 9.042450 | TCAAGAGGATTTAAGTATGGAGTTGTA | 57.958 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
2051 | 2453 | 1.075482 | CTGGCCAAGAAAGAGCCCA | 59.925 | 57.895 | 7.01 | 0.00 | 46.55 | 5.36 |
2063 | 2465 | 1.041447 | AGAGCCCATTGCCAATGAGC | 61.041 | 55.000 | 18.84 | 17.02 | 42.28 | 4.26 |
2067 | 2469 | 1.327690 | CCCATTGCCAATGAGCTGCT | 61.328 | 55.000 | 18.84 | 0.00 | 41.46 | 4.24 |
2069 | 2471 | 1.103803 | CATTGCCAATGAGCTGCTCT | 58.896 | 50.000 | 28.04 | 12.64 | 41.46 | 4.09 |
2087 | 2489 | 0.108424 | CTCCTGCTTTCTCCACCGAG | 60.108 | 60.000 | 0.00 | 0.00 | 37.48 | 4.63 |
2115 | 2517 | 5.443230 | TCTGGAAAACCCCAAACAATTTT | 57.557 | 34.783 | 0.00 | 0.00 | 35.47 | 1.82 |
2142 | 2544 | 4.319839 | GGTCAAACTTTGCTAGAACAGAGC | 60.320 | 45.833 | 0.00 | 0.00 | 40.53 | 4.09 |
2155 | 2557 | 6.019479 | GCTAGAACAGAGCACACATATGTAAC | 60.019 | 42.308 | 8.32 | 0.92 | 39.84 | 2.50 |
2164 | 2566 | 6.160684 | AGCACACATATGTAACGTGTAGAAA | 58.839 | 36.000 | 20.01 | 0.00 | 41.79 | 2.52 |
2177 | 2579 | 4.238514 | CGTGTAGAAAGAGTCCAAGGAAG | 58.761 | 47.826 | 0.00 | 0.00 | 0.00 | 3.46 |
2200 | 2602 | 4.065423 | ACACGTGCAAAGATAATTGACG | 57.935 | 40.909 | 17.22 | 0.00 | 38.54 | 4.35 |
2287 | 2689 | 2.674796 | AAGAGTCCAACGGCAGATAC | 57.325 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2324 | 2727 | 9.830294 | AACTAGCAACAATTAATTACCGTTAAC | 57.170 | 29.630 | 0.00 | 0.00 | 0.00 | 2.01 |
2388 | 2791 | 4.370917 | GCTTGTCCATGTCACATGTTTTT | 58.629 | 39.130 | 16.74 | 0.00 | 0.00 | 1.94 |
2390 | 2793 | 6.158598 | GCTTGTCCATGTCACATGTTTTTAT | 58.841 | 36.000 | 16.74 | 0.00 | 0.00 | 1.40 |
2598 | 4524 | 0.603569 | ACAAGTCGTGCTCTGGGTAG | 59.396 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2667 | 4593 | 7.867403 | GCCAATCTAATTTTGTTTGAGAACTCA | 59.133 | 33.333 | 0.00 | 0.00 | 36.70 | 3.41 |
2680 | 4606 | 8.988934 | TGTTTGAGAACTCATGTAATGTAAGTC | 58.011 | 33.333 | 5.34 | 0.00 | 39.64 | 3.01 |
2681 | 4607 | 8.443937 | GTTTGAGAACTCATGTAATGTAAGTCC | 58.556 | 37.037 | 5.34 | 0.00 | 46.80 | 3.85 |
2730 | 4656 | 6.071221 | ACAGATGTGTTTGCATGGACATAAAT | 60.071 | 34.615 | 5.29 | 0.00 | 30.30 | 1.40 |
2773 | 6022 | 6.657836 | ACACCATTCAGCTAAACGTATTAC | 57.342 | 37.500 | 0.00 | 0.00 | 0.00 | 1.89 |
2777 | 6026 | 5.978919 | CCATTCAGCTAAACGTATTACGGTA | 59.021 | 40.000 | 19.51 | 10.49 | 42.91 | 4.02 |
2778 | 6027 | 6.643770 | CCATTCAGCTAAACGTATTACGGTAT | 59.356 | 38.462 | 19.51 | 8.21 | 42.91 | 2.73 |
2779 | 6028 | 7.170320 | CCATTCAGCTAAACGTATTACGGTATT | 59.830 | 37.037 | 19.51 | 13.27 | 42.91 | 1.89 |
2780 | 6029 | 9.184062 | CATTCAGCTAAACGTATTACGGTATTA | 57.816 | 33.333 | 19.51 | 13.62 | 42.91 | 0.98 |
2790 | 6039 | 6.783162 | CGTATTACGGTATTAGAGATCCCAG | 58.217 | 44.000 | 8.36 | 0.00 | 38.08 | 4.45 |
2886 | 6135 | 1.202722 | CCCATTACGGTTCGGGCTTAT | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 1.73 |
2891 | 6140 | 0.466543 | ACGGTTCGGGCTTATGCATA | 59.533 | 50.000 | 1.16 | 1.16 | 41.91 | 3.14 |
2911 | 6160 | 3.616956 | AGAATCGAGCCAACATGAAGA | 57.383 | 42.857 | 0.00 | 0.00 | 0.00 | 2.87 |
2919 | 6168 | 1.363744 | CCAACATGAAGACGCTCCTC | 58.636 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
2970 | 6219 | 5.065218 | CCTCTGTTTATATTCGCTGCTTTGT | 59.935 | 40.000 | 0.00 | 0.00 | 0.00 | 2.83 |
3017 | 6266 | 8.889849 | AGTAAATCAAACACGTATTGCATTAC | 57.110 | 30.769 | 19.47 | 19.47 | 33.52 | 1.89 |
3083 | 6334 | 3.999229 | CACTTGTCTCGGTGCTATTTC | 57.001 | 47.619 | 0.00 | 0.00 | 0.00 | 2.17 |
3093 | 6344 | 2.802816 | CGGTGCTATTTCTGATACTGCC | 59.197 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
3103 | 6354 | 2.516930 | ATACTGCCATGGTGCCGC | 60.517 | 61.111 | 14.67 | 0.00 | 0.00 | 6.53 |
3166 | 6417 | 6.749118 | CAGTCCATCTGCAGTTTAAAATTAGC | 59.251 | 38.462 | 14.67 | 0.00 | 37.36 | 3.09 |
3220 | 6471 | 4.246458 | ACTTTTGGTTTAAAACGCAGCAA | 58.754 | 34.783 | 0.00 | 0.00 | 34.66 | 3.91 |
3270 | 6521 | 3.196469 | TGGCTGATGTTAAGTCAGGAGAG | 59.804 | 47.826 | 15.78 | 0.00 | 42.58 | 3.20 |
3310 | 6561 | 4.530875 | TGCACAATTTTTGGTGGGAAAAT | 58.469 | 34.783 | 0.00 | 0.00 | 38.09 | 1.82 |
3339 | 6590 | 3.031736 | ACCTGTGTACTTGATATCGGCT | 58.968 | 45.455 | 0.00 | 0.00 | 0.00 | 5.52 |
3351 | 6602 | 0.396556 | TATCGGCTGTAGTCCTGGCA | 60.397 | 55.000 | 0.00 | 0.00 | 37.41 | 4.92 |
3363 | 6614 | 3.285484 | AGTCCTGGCAATGATGAACATC | 58.715 | 45.455 | 7.73 | 7.73 | 38.38 | 3.06 |
3428 | 6679 | 3.249189 | GTGCAGGGGAGGGTGACA | 61.249 | 66.667 | 0.00 | 0.00 | 0.00 | 3.58 |
3500 | 6751 | 2.124151 | GGAAGGGTCATGCCGCAT | 60.124 | 61.111 | 0.00 | 0.00 | 38.44 | 4.73 |
3546 | 6797 | 2.002018 | TTCCCCGGTTGCTTTGTCCT | 62.002 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
3663 | 6916 | 4.826274 | AGGCACAGCAATAGAGAGTTTA | 57.174 | 40.909 | 0.00 | 0.00 | 0.00 | 2.01 |
3696 | 6949 | 2.618053 | CTTTACCGGCTGTAGGAACTG | 58.382 | 52.381 | 0.00 | 0.00 | 41.52 | 3.16 |
3697 | 6950 | 0.899720 | TTACCGGCTGTAGGAACTGG | 59.100 | 55.000 | 0.00 | 0.00 | 41.52 | 4.00 |
3702 | 6975 | 0.909623 | GGCTGTAGGAACTGGGCTTA | 59.090 | 55.000 | 0.00 | 0.00 | 41.52 | 3.09 |
3746 | 7019 | 1.251251 | AGCTGTTGCCACTGAATTCC | 58.749 | 50.000 | 2.27 | 0.00 | 40.80 | 3.01 |
3832 | 7106 | 4.060205 | TGATGTATCATGCGTGGAATGAG | 58.940 | 43.478 | 5.98 | 0.00 | 37.46 | 2.90 |
3844 | 7118 | 4.676196 | GCGTGGAATGAGCATTTTGAATCT | 60.676 | 41.667 | 0.00 | 0.00 | 0.00 | 2.40 |
3895 | 7169 | 4.848841 | CGTGCTATTATTTCGTTGTTTGCA | 59.151 | 37.500 | 0.00 | 0.00 | 0.00 | 4.08 |
3931 | 7205 | 8.887036 | AGTTTGATATATTCTAACATGTCGCA | 57.113 | 30.769 | 0.00 | 0.00 | 40.98 | 5.10 |
3933 | 7207 | 8.978539 | GTTTGATATATTCTAACATGTCGCAGA | 58.021 | 33.333 | 0.00 | 0.00 | 39.14 | 4.26 |
3934 | 7208 | 9.710900 | TTTGATATATTCTAACATGTCGCAGAT | 57.289 | 29.630 | 0.00 | 0.00 | 40.67 | 2.90 |
3985 | 7264 | 2.622942 | TGAAGGCAGCACGAAAAGAAAT | 59.377 | 40.909 | 0.00 | 0.00 | 0.00 | 2.17 |
4013 | 7292 | 7.208777 | TGATCAGCTGAATCTTATGAACTCTC | 58.791 | 38.462 | 22.50 | 8.81 | 0.00 | 3.20 |
4026 | 7680 | 1.536073 | AACTCTCGCACCAGCTGCTA | 61.536 | 55.000 | 8.66 | 0.00 | 44.64 | 3.49 |
4036 | 7690 | 0.034186 | CCAGCTGCTACCCCAATGAA | 60.034 | 55.000 | 8.66 | 0.00 | 0.00 | 2.57 |
4070 | 7724 | 8.103305 | AGAGAAACCAAGATGTAGAAGCAAATA | 58.897 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
4078 | 7733 | 4.844349 | TGTAGAAGCAAATAGAAGCCCT | 57.156 | 40.909 | 0.00 | 0.00 | 0.00 | 5.19 |
4087 | 7742 | 4.641989 | GCAAATAGAAGCCCTCTGATGAAA | 59.358 | 41.667 | 0.00 | 0.00 | 35.41 | 2.69 |
4094 | 7749 | 2.887152 | AGCCCTCTGATGAAACAAACAC | 59.113 | 45.455 | 0.00 | 0.00 | 0.00 | 3.32 |
4098 | 7753 | 3.254166 | CCTCTGATGAAACAAACACCAGG | 59.746 | 47.826 | 0.00 | 0.00 | 0.00 | 4.45 |
4100 | 7755 | 4.531854 | TCTGATGAAACAAACACCAGGAA | 58.468 | 39.130 | 0.00 | 0.00 | 0.00 | 3.36 |
4113 | 7768 | 0.527565 | CCAGGAACAAATGGAAGCCG | 59.472 | 55.000 | 0.00 | 0.00 | 39.02 | 5.52 |
4147 | 7802 | 5.104527 | CCATACACCAGTAGGAAATGGAAGA | 60.105 | 44.000 | 0.00 | 0.00 | 40.87 | 2.87 |
4156 | 7811 | 3.747852 | AGGAAATGGAAGACCCCAGATA | 58.252 | 45.455 | 0.00 | 0.00 | 39.97 | 1.98 |
4245 | 7900 | 3.984838 | TGGAACAAATGCCAGCAAC | 57.015 | 47.368 | 0.00 | 0.00 | 31.92 | 4.17 |
4246 | 7901 | 1.117994 | TGGAACAAATGCCAGCAACA | 58.882 | 45.000 | 0.00 | 0.00 | 31.92 | 3.33 |
4251 | 7906 | 4.319694 | GGAACAAATGCCAGCAACAAAATC | 60.320 | 41.667 | 0.00 | 0.00 | 0.00 | 2.17 |
4265 | 7920 | 9.767684 | CAGCAACAAAATCGTAATATTCTAACA | 57.232 | 29.630 | 0.00 | 0.00 | 0.00 | 2.41 |
4316 | 7971 | 6.276847 | AGCTAAGCACACAGAGATGTTATAC | 58.723 | 40.000 | 0.00 | 0.00 | 0.00 | 1.47 |
4318 | 7973 | 6.199908 | GCTAAGCACACAGAGATGTTATACAG | 59.800 | 42.308 | 0.00 | 0.00 | 0.00 | 2.74 |
4358 | 8013 | 5.128205 | CAGAATCTCATGGTGCCAGATTTA | 58.872 | 41.667 | 7.73 | 0.00 | 30.44 | 1.40 |
4400 | 8055 | 3.218453 | CGATGTCAGACTGGATCTAGGT | 58.782 | 50.000 | 11.17 | 0.00 | 35.15 | 3.08 |
4401 | 8056 | 3.004210 | CGATGTCAGACTGGATCTAGGTG | 59.996 | 52.174 | 11.17 | 7.60 | 35.15 | 4.00 |
4402 | 8057 | 2.103373 | TGTCAGACTGGATCTAGGTGC | 58.897 | 52.381 | 11.17 | 5.05 | 35.15 | 5.01 |
4418 | 8073 | 3.679389 | AGGTGCTGTTGAACATAGAAGG | 58.321 | 45.455 | 0.00 | 0.00 | 0.00 | 3.46 |
4424 | 8079 | 4.019174 | CTGTTGAACATAGAAGGGGCATT | 58.981 | 43.478 | 0.00 | 0.00 | 0.00 | 3.56 |
4428 | 8083 | 5.387113 | TGAACATAGAAGGGGCATTACAT | 57.613 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
4434 | 8089 | 4.046286 | AGAAGGGGCATTACATCACAAA | 57.954 | 40.909 | 0.00 | 0.00 | 0.00 | 2.83 |
4440 | 8095 | 8.725606 | AAGGGGCATTACATCACAAAATATAT | 57.274 | 30.769 | 0.00 | 0.00 | 0.00 | 0.86 |
4441 | 8096 | 9.821240 | AAGGGGCATTACATCACAAAATATATA | 57.179 | 29.630 | 0.00 | 0.00 | 0.00 | 0.86 |
4467 | 8122 | 5.748402 | TGTAATCTGGAGCATTGAAGTGAT | 58.252 | 37.500 | 0.00 | 0.00 | 0.00 | 3.06 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
9 | 10 | 5.594725 | TGCACAAAATAAAGAAGGTGGTACA | 59.405 | 36.000 | 0.00 | 0.00 | 0.00 | 2.90 |
10 | 11 | 6.079424 | TGCACAAAATAAAGAAGGTGGTAC | 57.921 | 37.500 | 0.00 | 0.00 | 0.00 | 3.34 |
11 | 12 | 6.491745 | TGATGCACAAAATAAAGAAGGTGGTA | 59.508 | 34.615 | 0.00 | 0.00 | 0.00 | 3.25 |
12 | 13 | 5.304101 | TGATGCACAAAATAAAGAAGGTGGT | 59.696 | 36.000 | 0.00 | 0.00 | 0.00 | 4.16 |
13 | 14 | 5.782047 | TGATGCACAAAATAAAGAAGGTGG | 58.218 | 37.500 | 0.00 | 0.00 | 0.00 | 4.61 |
14 | 15 | 5.865552 | CCTGATGCACAAAATAAAGAAGGTG | 59.134 | 40.000 | 0.00 | 0.00 | 0.00 | 4.00 |
15 | 16 | 5.539955 | ACCTGATGCACAAAATAAAGAAGGT | 59.460 | 36.000 | 0.00 | 0.00 | 0.00 | 3.50 |
16 | 17 | 5.865552 | CACCTGATGCACAAAATAAAGAAGG | 59.134 | 40.000 | 0.00 | 0.00 | 0.00 | 3.46 |
17 | 18 | 6.449698 | ACACCTGATGCACAAAATAAAGAAG | 58.550 | 36.000 | 0.00 | 0.00 | 0.00 | 2.85 |
18 | 19 | 6.403866 | ACACCTGATGCACAAAATAAAGAA | 57.596 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
19 | 20 | 7.701539 | ATACACCTGATGCACAAAATAAAGA | 57.298 | 32.000 | 0.00 | 0.00 | 0.00 | 2.52 |
20 | 21 | 8.131100 | CCTATACACCTGATGCACAAAATAAAG | 58.869 | 37.037 | 0.00 | 0.00 | 0.00 | 1.85 |
21 | 22 | 7.068103 | CCCTATACACCTGATGCACAAAATAAA | 59.932 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
22 | 23 | 6.545666 | CCCTATACACCTGATGCACAAAATAA | 59.454 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
23 | 24 | 6.061441 | CCCTATACACCTGATGCACAAAATA | 58.939 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
24 | 25 | 4.889409 | CCCTATACACCTGATGCACAAAAT | 59.111 | 41.667 | 0.00 | 0.00 | 0.00 | 1.82 |
25 | 26 | 4.263727 | ACCCTATACACCTGATGCACAAAA | 60.264 | 41.667 | 0.00 | 0.00 | 0.00 | 2.44 |
26 | 27 | 3.265737 | ACCCTATACACCTGATGCACAAA | 59.734 | 43.478 | 0.00 | 0.00 | 0.00 | 2.83 |
27 | 28 | 2.843730 | ACCCTATACACCTGATGCACAA | 59.156 | 45.455 | 0.00 | 0.00 | 0.00 | 3.33 |
28 | 29 | 2.434336 | GACCCTATACACCTGATGCACA | 59.566 | 50.000 | 0.00 | 0.00 | 0.00 | 4.57 |
29 | 30 | 2.545952 | CGACCCTATACACCTGATGCAC | 60.546 | 54.545 | 0.00 | 0.00 | 0.00 | 4.57 |
30 | 31 | 1.686587 | CGACCCTATACACCTGATGCA | 59.313 | 52.381 | 0.00 | 0.00 | 0.00 | 3.96 |
31 | 32 | 1.961394 | TCGACCCTATACACCTGATGC | 59.039 | 52.381 | 0.00 | 0.00 | 0.00 | 3.91 |
32 | 33 | 4.873746 | ATTCGACCCTATACACCTGATG | 57.126 | 45.455 | 0.00 | 0.00 | 0.00 | 3.07 |
33 | 34 | 8.660295 | TTATAATTCGACCCTATACACCTGAT | 57.340 | 34.615 | 0.00 | 0.00 | 0.00 | 2.90 |
34 | 35 | 8.481492 | TTTATAATTCGACCCTATACACCTGA | 57.519 | 34.615 | 0.00 | 0.00 | 0.00 | 3.86 |
35 | 36 | 9.550406 | TTTTTATAATTCGACCCTATACACCTG | 57.450 | 33.333 | 0.00 | 0.00 | 0.00 | 4.00 |
60 | 61 | 6.468956 | CGCTTGCAATGTACTTCGATATTTTT | 59.531 | 34.615 | 0.00 | 0.00 | 0.00 | 1.94 |
61 | 62 | 5.965334 | CGCTTGCAATGTACTTCGATATTTT | 59.035 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
62 | 63 | 5.293324 | TCGCTTGCAATGTACTTCGATATTT | 59.707 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
63 | 64 | 4.808895 | TCGCTTGCAATGTACTTCGATATT | 59.191 | 37.500 | 0.00 | 0.00 | 0.00 | 1.28 |
64 | 65 | 4.368315 | TCGCTTGCAATGTACTTCGATAT | 58.632 | 39.130 | 0.00 | 0.00 | 0.00 | 1.63 |
65 | 66 | 3.776340 | TCGCTTGCAATGTACTTCGATA | 58.224 | 40.909 | 0.00 | 0.00 | 0.00 | 2.92 |
66 | 67 | 2.616960 | TCGCTTGCAATGTACTTCGAT | 58.383 | 42.857 | 0.00 | 0.00 | 0.00 | 3.59 |
67 | 68 | 2.073117 | TCGCTTGCAATGTACTTCGA | 57.927 | 45.000 | 0.00 | 0.00 | 0.00 | 3.71 |
68 | 69 | 2.873170 | TTCGCTTGCAATGTACTTCG | 57.127 | 45.000 | 0.00 | 0.00 | 0.00 | 3.79 |
69 | 70 | 6.106877 | TCTAATTCGCTTGCAATGTACTTC | 57.893 | 37.500 | 0.00 | 0.00 | 0.00 | 3.01 |
70 | 71 | 6.683974 | ATCTAATTCGCTTGCAATGTACTT | 57.316 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
71 | 72 | 6.238484 | GGAATCTAATTCGCTTGCAATGTACT | 60.238 | 38.462 | 0.00 | 0.00 | 40.17 | 2.73 |
72 | 73 | 5.909610 | GGAATCTAATTCGCTTGCAATGTAC | 59.090 | 40.000 | 0.00 | 0.00 | 40.17 | 2.90 |
73 | 74 | 5.588246 | TGGAATCTAATTCGCTTGCAATGTA | 59.412 | 36.000 | 0.00 | 0.00 | 40.17 | 2.29 |
74 | 75 | 4.398988 | TGGAATCTAATTCGCTTGCAATGT | 59.601 | 37.500 | 0.00 | 0.00 | 40.17 | 2.71 |
75 | 76 | 4.923893 | TGGAATCTAATTCGCTTGCAATG | 58.076 | 39.130 | 0.00 | 0.00 | 40.17 | 2.82 |
76 | 77 | 5.581126 | TTGGAATCTAATTCGCTTGCAAT | 57.419 | 34.783 | 0.00 | 0.00 | 40.17 | 3.56 |
77 | 78 | 5.581126 | ATTGGAATCTAATTCGCTTGCAA | 57.419 | 34.783 | 0.00 | 0.00 | 40.17 | 4.08 |
78 | 79 | 5.581126 | AATTGGAATCTAATTCGCTTGCA | 57.419 | 34.783 | 0.00 | 0.00 | 40.17 | 4.08 |
79 | 80 | 6.729187 | AGTAATTGGAATCTAATTCGCTTGC | 58.271 | 36.000 | 7.85 | 0.00 | 40.17 | 4.01 |
80 | 81 | 9.573133 | AAAAGTAATTGGAATCTAATTCGCTTG | 57.427 | 29.630 | 7.85 | 0.00 | 40.17 | 4.01 |
110 | 111 | 9.461312 | ACACATAGAAAGATAGGCAATAACAAA | 57.539 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
111 | 112 | 8.892723 | CACACATAGAAAGATAGGCAATAACAA | 58.107 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
112 | 113 | 8.046708 | ACACACATAGAAAGATAGGCAATAACA | 58.953 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
113 | 114 | 8.438676 | ACACACATAGAAAGATAGGCAATAAC | 57.561 | 34.615 | 0.00 | 0.00 | 0.00 | 1.89 |
116 | 117 | 9.461312 | TTTTACACACATAGAAAGATAGGCAAT | 57.539 | 29.630 | 0.00 | 0.00 | 0.00 | 3.56 |
117 | 118 | 8.856153 | TTTTACACACATAGAAAGATAGGCAA | 57.144 | 30.769 | 0.00 | 0.00 | 0.00 | 4.52 |
118 | 119 | 9.461312 | AATTTTACACACATAGAAAGATAGGCA | 57.539 | 29.630 | 0.00 | 0.00 | 0.00 | 4.75 |
149 | 150 | 9.182933 | GCATTTGAAAATTTGTATTTGTTGCAT | 57.817 | 25.926 | 0.00 | 0.00 | 34.27 | 3.96 |
150 | 151 | 7.646922 | GGCATTTGAAAATTTGTATTTGTTGCA | 59.353 | 29.630 | 0.00 | 0.00 | 34.27 | 4.08 |
151 | 152 | 7.114670 | GGGCATTTGAAAATTTGTATTTGTTGC | 59.885 | 33.333 | 0.00 | 0.00 | 34.27 | 4.17 |
152 | 153 | 7.323177 | CGGGCATTTGAAAATTTGTATTTGTTG | 59.677 | 33.333 | 0.00 | 0.00 | 34.27 | 3.33 |
153 | 154 | 7.012799 | ACGGGCATTTGAAAATTTGTATTTGTT | 59.987 | 29.630 | 0.00 | 0.00 | 34.27 | 2.83 |
154 | 155 | 6.484977 | ACGGGCATTTGAAAATTTGTATTTGT | 59.515 | 30.769 | 0.00 | 0.00 | 34.27 | 2.83 |
155 | 156 | 6.796072 | CACGGGCATTTGAAAATTTGTATTTG | 59.204 | 34.615 | 0.00 | 0.00 | 34.27 | 2.32 |
156 | 157 | 6.072783 | CCACGGGCATTTGAAAATTTGTATTT | 60.073 | 34.615 | 0.00 | 0.00 | 35.49 | 1.40 |
157 | 158 | 5.411053 | CCACGGGCATTTGAAAATTTGTATT | 59.589 | 36.000 | 0.00 | 0.00 | 0.00 | 1.89 |
158 | 159 | 4.934602 | CCACGGGCATTTGAAAATTTGTAT | 59.065 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
159 | 160 | 4.310769 | CCACGGGCATTTGAAAATTTGTA | 58.689 | 39.130 | 0.00 | 0.00 | 0.00 | 2.41 |
160 | 161 | 3.137533 | CCACGGGCATTTGAAAATTTGT | 58.862 | 40.909 | 0.00 | 0.00 | 0.00 | 2.83 |
161 | 162 | 3.809918 | CCACGGGCATTTGAAAATTTG | 57.190 | 42.857 | 0.00 | 0.00 | 0.00 | 2.32 |
178 | 179 | 1.772063 | GACTGTCCGTGTGTTGCCAC | 61.772 | 60.000 | 0.00 | 0.00 | 42.19 | 5.01 |
179 | 180 | 1.522806 | GACTGTCCGTGTGTTGCCA | 60.523 | 57.895 | 0.00 | 0.00 | 0.00 | 4.92 |
180 | 181 | 0.032952 | TAGACTGTCCGTGTGTTGCC | 59.967 | 55.000 | 3.76 | 0.00 | 0.00 | 4.52 |
181 | 182 | 1.137513 | GTAGACTGTCCGTGTGTTGC | 58.862 | 55.000 | 3.76 | 0.00 | 0.00 | 4.17 |
182 | 183 | 2.795175 | AGTAGACTGTCCGTGTGTTG | 57.205 | 50.000 | 3.76 | 0.00 | 0.00 | 3.33 |
183 | 184 | 3.484407 | ACTAGTAGACTGTCCGTGTGTT | 58.516 | 45.455 | 3.59 | 0.00 | 0.00 | 3.32 |
184 | 185 | 3.137446 | ACTAGTAGACTGTCCGTGTGT | 57.863 | 47.619 | 3.59 | 0.00 | 0.00 | 3.72 |
185 | 186 | 5.618056 | TTTACTAGTAGACTGTCCGTGTG | 57.382 | 43.478 | 3.59 | 0.00 | 0.00 | 3.82 |
186 | 187 | 7.555554 | ACATATTTACTAGTAGACTGTCCGTGT | 59.444 | 37.037 | 3.59 | 0.14 | 0.00 | 4.49 |
187 | 188 | 7.928103 | ACATATTTACTAGTAGACTGTCCGTG | 58.072 | 38.462 | 3.59 | 0.00 | 0.00 | 4.94 |
188 | 189 | 9.618890 | TTACATATTTACTAGTAGACTGTCCGT | 57.381 | 33.333 | 3.59 | 0.00 | 0.00 | 4.69 |
367 | 372 | 2.823196 | TCTTGCAACTGTTTCGTGTG | 57.177 | 45.000 | 0.00 | 0.00 | 0.00 | 3.82 |
371 | 376 | 2.535574 | GCCTTTTCTTGCAACTGTTTCG | 59.464 | 45.455 | 0.00 | 0.00 | 0.00 | 3.46 |
382 | 387 | 8.592155 | GCTTTATTTATTTACCGCCTTTTCTTG | 58.408 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
385 | 390 | 6.197655 | CCGCTTTATTTATTTACCGCCTTTTC | 59.802 | 38.462 | 0.00 | 0.00 | 0.00 | 2.29 |
388 | 394 | 4.037089 | CCCGCTTTATTTATTTACCGCCTT | 59.963 | 41.667 | 0.00 | 0.00 | 0.00 | 4.35 |
432 | 438 | 2.093394 | CCAAAAACCCCTCCGTTGTTTT | 60.093 | 45.455 | 0.00 | 0.00 | 42.30 | 2.43 |
434 | 440 | 1.116308 | CCAAAAACCCCTCCGTTGTT | 58.884 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
436 | 442 | 1.272212 | CATCCAAAAACCCCTCCGTTG | 59.728 | 52.381 | 0.00 | 0.00 | 0.00 | 4.10 |
437 | 443 | 1.133294 | ACATCCAAAAACCCCTCCGTT | 60.133 | 47.619 | 0.00 | 0.00 | 0.00 | 4.44 |
439 | 445 | 0.887933 | CACATCCAAAAACCCCTCCG | 59.112 | 55.000 | 0.00 | 0.00 | 0.00 | 4.63 |
440 | 446 | 1.203125 | TCCACATCCAAAAACCCCTCC | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
564 | 581 | 1.560505 | AAATTTGAAGCGGGCCTCAT | 58.439 | 45.000 | 0.84 | 0.00 | 0.00 | 2.90 |
570 | 587 | 7.600752 | TCCAAATAAGTTAAAATTTGAAGCGGG | 59.399 | 33.333 | 15.57 | 4.11 | 42.90 | 6.13 |
584 | 601 | 7.496346 | ACTCCTCAGATGTCCAAATAAGTTA | 57.504 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
587 | 604 | 6.648192 | AGAACTCCTCAGATGTCCAAATAAG | 58.352 | 40.000 | 0.00 | 0.00 | 0.00 | 1.73 |
589 | 606 | 5.163509 | CGAGAACTCCTCAGATGTCCAAATA | 60.164 | 44.000 | 0.00 | 0.00 | 42.06 | 1.40 |
595 | 612 | 1.202359 | GCCGAGAACTCCTCAGATGTC | 60.202 | 57.143 | 0.00 | 0.00 | 42.06 | 3.06 |
644 | 662 | 4.893424 | ACAGTGCGTGAACAGTATTTTT | 57.107 | 36.364 | 0.00 | 0.00 | 0.00 | 1.94 |
646 | 664 | 4.024893 | CAGAACAGTGCGTGAACAGTATTT | 60.025 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
647 | 665 | 3.494626 | CAGAACAGTGCGTGAACAGTATT | 59.505 | 43.478 | 0.00 | 0.00 | 0.00 | 1.89 |
648 | 666 | 3.059884 | CAGAACAGTGCGTGAACAGTAT | 58.940 | 45.455 | 0.00 | 0.00 | 0.00 | 2.12 |
691 | 709 | 5.583854 | TCATTTAGACATTTGAGCAGCTCTC | 59.416 | 40.000 | 23.15 | 11.79 | 42.23 | 3.20 |
709 | 727 | 6.811170 | GGTCCGCTTCAATTTCAATTCATTTA | 59.189 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
725 | 743 | 1.733399 | GACGTGTGAGGTCCGCTTC | 60.733 | 63.158 | 0.00 | 0.00 | 0.00 | 3.86 |
800 | 855 | 5.047731 | CAGGCTCATCTATTCCAGATACGAA | 60.048 | 44.000 | 0.00 | 0.00 | 42.40 | 3.85 |
801 | 856 | 4.460731 | CAGGCTCATCTATTCCAGATACGA | 59.539 | 45.833 | 0.00 | 0.00 | 42.40 | 3.43 |
802 | 857 | 4.381398 | CCAGGCTCATCTATTCCAGATACG | 60.381 | 50.000 | 0.00 | 0.00 | 42.40 | 3.06 |
804 | 859 | 4.099633 | CCCAGGCTCATCTATTCCAGATA | 58.900 | 47.826 | 0.00 | 0.00 | 42.40 | 1.98 |
805 | 860 | 2.911636 | CCCAGGCTCATCTATTCCAGAT | 59.088 | 50.000 | 0.00 | 0.00 | 45.35 | 2.90 |
806 | 861 | 2.333069 | CCCAGGCTCATCTATTCCAGA | 58.667 | 52.381 | 0.00 | 0.00 | 37.79 | 3.86 |
807 | 862 | 1.271271 | GCCCAGGCTCATCTATTCCAG | 60.271 | 57.143 | 0.08 | 0.00 | 38.26 | 3.86 |
808 | 863 | 0.767375 | GCCCAGGCTCATCTATTCCA | 59.233 | 55.000 | 0.08 | 0.00 | 38.26 | 3.53 |
809 | 864 | 0.767375 | TGCCCAGGCTCATCTATTCC | 59.233 | 55.000 | 10.58 | 0.00 | 42.51 | 3.01 |
811 | 866 | 0.475906 | GGTGCCCAGGCTCATCTATT | 59.524 | 55.000 | 10.58 | 0.00 | 42.51 | 1.73 |
812 | 867 | 1.762522 | CGGTGCCCAGGCTCATCTAT | 61.763 | 60.000 | 10.58 | 0.00 | 42.51 | 1.98 |
813 | 868 | 2.434843 | CGGTGCCCAGGCTCATCTA | 61.435 | 63.158 | 10.58 | 0.00 | 42.51 | 1.98 |
986 | 1073 | 3.133014 | CCATGTCCGGAGCTCGAT | 58.867 | 61.111 | 3.06 | 0.00 | 42.43 | 3.59 |
987 | 1074 | 3.838271 | GCCATGTCCGGAGCTCGA | 61.838 | 66.667 | 3.06 | 0.00 | 42.43 | 4.04 |
1159 | 1246 | 1.829096 | GTAGGCGGAGAGGGGAGAC | 60.829 | 68.421 | 0.00 | 0.00 | 0.00 | 3.36 |
1175 | 1262 | 3.232483 | TTGTGTCCGTGGCCCGTA | 61.232 | 61.111 | 0.00 | 0.00 | 33.66 | 4.02 |
1195 | 1282 | 2.990066 | AATCGAAGAAGAATCCGGCT | 57.010 | 45.000 | 0.00 | 0.00 | 43.58 | 5.52 |
1207 | 1294 | 2.279136 | CAGCGACGGTAAGAAATCGAAG | 59.721 | 50.000 | 0.00 | 0.00 | 36.70 | 3.79 |
1231 | 1318 | 0.389391 | CGTATTCACCTGGCGGAGAT | 59.611 | 55.000 | 0.00 | 0.00 | 29.70 | 2.75 |
1356 | 1443 | 3.435186 | GAACGCCCTGGAAGCAGC | 61.435 | 66.667 | 0.00 | 0.00 | 0.00 | 5.25 |
1374 | 1461 | 1.355381 | TGACCCACTGGAAGCATCATT | 59.645 | 47.619 | 0.00 | 0.00 | 37.60 | 2.57 |
1375 | 1462 | 0.994247 | TGACCCACTGGAAGCATCAT | 59.006 | 50.000 | 0.00 | 0.00 | 37.60 | 2.45 |
1463 | 1593 | 2.286523 | CGCCTTCCTCTGGTGGTCT | 61.287 | 63.158 | 0.00 | 0.00 | 0.00 | 3.85 |
1533 | 1663 | 1.813786 | CGGTATCTTCCGGATCTCCTC | 59.186 | 57.143 | 4.15 | 0.00 | 45.88 | 3.71 |
1597 | 1727 | 0.825840 | GCCATAGGCTCTCGAGTCCT | 60.826 | 60.000 | 24.58 | 24.58 | 46.69 | 3.85 |
1613 | 1743 | 3.197766 | CAGTAGAATGTCTTACTGGGCCA | 59.802 | 47.826 | 5.85 | 5.85 | 37.02 | 5.36 |
1619 | 1749 | 4.615513 | AGGGAGCAGTAGAATGTCTTACT | 58.384 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
1659 | 1793 | 3.056536 | ACAGATCTTTCTAGCAAGACGCA | 60.057 | 43.478 | 6.99 | 0.00 | 46.13 | 5.24 |
1661 | 1795 | 6.302615 | CAAAACAGATCTTTCTAGCAAGACG | 58.697 | 40.000 | 6.99 | 2.33 | 35.57 | 4.18 |
1675 | 1812 | 9.428097 | AGGATTAAAATCTTTGCAAAACAGATC | 57.572 | 29.630 | 13.84 | 9.78 | 35.73 | 2.75 |
1680 | 1817 | 7.961325 | TCCAGGATTAAAATCTTTGCAAAAC | 57.039 | 32.000 | 13.84 | 0.00 | 35.73 | 2.43 |
1697 | 1834 | 2.357154 | CGTTCCAGGGAAATTCCAGGAT | 60.357 | 50.000 | 21.01 | 0.33 | 40.45 | 3.24 |
1739 | 1876 | 3.670625 | CAGGGGTGACTAAATCGTTGAA | 58.329 | 45.455 | 0.00 | 0.00 | 0.00 | 2.69 |
1774 | 1911 | 3.577649 | TTTCGAGAGACTCTTCGCAAT | 57.422 | 42.857 | 6.40 | 0.00 | 41.84 | 3.56 |
1807 | 1945 | 4.530553 | TCTCAGTACAAATTCAGTGGCCTA | 59.469 | 41.667 | 3.32 | 0.00 | 0.00 | 3.93 |
1824 | 1962 | 6.183361 | ACCCTATTTGAAACAAGTCTCTCAGT | 60.183 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
1833 | 1971 | 7.362920 | CCTGATGGTAACCCTATTTGAAACAAG | 60.363 | 40.741 | 0.00 | 0.00 | 0.00 | 3.16 |
1848 | 1986 | 2.493547 | GGCTTGGCCTGATGGTAAC | 58.506 | 57.895 | 3.32 | 0.00 | 46.69 | 2.50 |
1895 | 2033 | 5.598417 | ACATTTGCTCCTTTGGTTAGTTCTT | 59.402 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1970 | 2372 | 8.735692 | TGATATTCACTTTGATATGCAAGTCA | 57.264 | 30.769 | 0.00 | 0.00 | 37.87 | 3.41 |
1976 | 2378 | 8.613060 | TCCTCTTGATATTCACTTTGATATGC | 57.387 | 34.615 | 0.00 | 0.00 | 0.00 | 3.14 |
2019 | 2421 | 3.657398 | TGGCCAGTGATGATGAGAATT | 57.343 | 42.857 | 0.00 | 0.00 | 0.00 | 2.17 |
2051 | 2453 | 1.390565 | GAGAGCAGCTCATTGGCAAT | 58.609 | 50.000 | 24.64 | 6.96 | 43.38 | 3.56 |
2063 | 2465 | 0.612229 | TGGAGAAAGCAGGAGAGCAG | 59.388 | 55.000 | 0.00 | 0.00 | 36.85 | 4.24 |
2067 | 2469 | 0.541998 | TCGGTGGAGAAAGCAGGAGA | 60.542 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
2069 | 2471 | 1.544825 | CCTCGGTGGAGAAAGCAGGA | 61.545 | 60.000 | 0.00 | 0.00 | 43.27 | 3.86 |
2087 | 2489 | 2.302587 | TGGGGTTTTCCAGATGAACC | 57.697 | 50.000 | 0.00 | 0.00 | 42.91 | 3.62 |
2115 | 2517 | 3.462483 | TCTAGCAAAGTTTGACCGTGA | 57.538 | 42.857 | 19.82 | 6.48 | 0.00 | 4.35 |
2155 | 2557 | 3.936372 | TCCTTGGACTCTTTCTACACG | 57.064 | 47.619 | 0.00 | 0.00 | 0.00 | 4.49 |
2177 | 2579 | 4.403453 | GTCAATTATCTTTGCACGTGTCC | 58.597 | 43.478 | 18.38 | 1.32 | 0.00 | 4.02 |
2254 | 2656 | 6.509677 | CGTTGGACTCTTTTCTCACTTTACAC | 60.510 | 42.308 | 0.00 | 0.00 | 0.00 | 2.90 |
2388 | 2791 | 5.010314 | ACTCACGGACACTTGTCTAAACATA | 59.990 | 40.000 | 9.20 | 0.00 | 44.20 | 2.29 |
2390 | 2793 | 3.131577 | ACTCACGGACACTTGTCTAAACA | 59.868 | 43.478 | 9.20 | 0.00 | 44.20 | 2.83 |
2598 | 4524 | 4.002982 | TGTCATGGCACTAACTTGATGTC | 58.997 | 43.478 | 0.00 | 0.00 | 0.00 | 3.06 |
2678 | 4604 | 8.948631 | TCTCATGTATCAGAAAATACAAGGAC | 57.051 | 34.615 | 1.27 | 0.00 | 43.40 | 3.85 |
2680 | 4606 | 9.994432 | GTTTCTCATGTATCAGAAAATACAAGG | 57.006 | 33.333 | 8.44 | 0.00 | 43.40 | 3.61 |
2773 | 6022 | 6.896021 | TCTTAACTGGGATCTCTAATACCG | 57.104 | 41.667 | 0.00 | 0.00 | 0.00 | 4.02 |
2780 | 6029 | 9.621239 | TCCAATTATATCTTAACTGGGATCTCT | 57.379 | 33.333 | 0.00 | 0.00 | 0.00 | 3.10 |
2886 | 6135 | 2.689553 | TGTTGGCTCGATTCTATGCA | 57.310 | 45.000 | 0.00 | 0.00 | 0.00 | 3.96 |
2891 | 6140 | 3.265791 | GTCTTCATGTTGGCTCGATTCT | 58.734 | 45.455 | 0.00 | 0.00 | 0.00 | 2.40 |
2911 | 6160 | 1.304052 | ACTCAGAGCAGAGGAGCGT | 60.304 | 57.895 | 0.00 | 0.00 | 39.97 | 5.07 |
2919 | 6168 | 3.523606 | AGATAGCAACACTCAGAGCAG | 57.476 | 47.619 | 0.00 | 0.00 | 0.00 | 4.24 |
2959 | 6208 | 2.224185 | TGGAACTAGAACAAAGCAGCGA | 60.224 | 45.455 | 0.00 | 0.00 | 0.00 | 4.93 |
2960 | 6209 | 2.143122 | TGGAACTAGAACAAAGCAGCG | 58.857 | 47.619 | 0.00 | 0.00 | 0.00 | 5.18 |
2970 | 6219 | 7.241042 | ACTACAATACAAGCTGGAACTAGAA | 57.759 | 36.000 | 0.00 | 0.00 | 0.00 | 2.10 |
3017 | 6266 | 7.282585 | TGGATTAGACAGTTATTCCATTGAGG | 58.717 | 38.462 | 0.00 | 0.00 | 31.50 | 3.86 |
3031 | 6280 | 4.619973 | CTCTGCTAAGCTGGATTAGACAG | 58.380 | 47.826 | 9.42 | 13.57 | 37.76 | 3.51 |
3055 | 6306 | 1.597854 | CGAGACAAGTGCAAGCCCA | 60.598 | 57.895 | 0.00 | 0.00 | 0.00 | 5.36 |
3083 | 6334 | 1.162181 | CGGCACCATGGCAGTATCAG | 61.162 | 60.000 | 13.04 | 0.00 | 43.94 | 2.90 |
3093 | 6344 | 2.211619 | AAATTGGACGCGGCACCATG | 62.212 | 55.000 | 17.00 | 0.00 | 36.02 | 3.66 |
3103 | 6354 | 3.058501 | GGTGACAGTAACCAAATTGGACG | 60.059 | 47.826 | 20.25 | 6.59 | 40.96 | 4.79 |
3158 | 6409 | 8.230472 | CAGTATTCTGGATTCAGGCTAATTTT | 57.770 | 34.615 | 0.00 | 0.00 | 41.23 | 1.82 |
3193 | 6444 | 6.859508 | GCTGCGTTTTAAACCAAAAGTACTAT | 59.140 | 34.615 | 0.00 | 0.00 | 36.79 | 2.12 |
3199 | 6450 | 4.092091 | TGTTGCTGCGTTTTAAACCAAAAG | 59.908 | 37.500 | 1.97 | 0.00 | 36.79 | 2.27 |
3238 | 6489 | 6.677913 | ACTTAACATCAGCCACAAATGTAAC | 58.322 | 36.000 | 0.00 | 0.00 | 33.42 | 2.50 |
3276 | 6527 | 7.151308 | CCAAAAATTGTGCAACCTAAGACATA | 58.849 | 34.615 | 0.00 | 0.00 | 34.36 | 2.29 |
3284 | 6535 | 2.421248 | CCCACCAAAAATTGTGCAACCT | 60.421 | 45.455 | 0.00 | 0.00 | 34.36 | 3.50 |
3295 | 6546 | 4.651503 | TGTGCTCTATTTTCCCACCAAAAA | 59.348 | 37.500 | 0.00 | 0.00 | 0.00 | 1.94 |
3327 | 6578 | 3.305676 | CCAGGACTACAGCCGATATCAAG | 60.306 | 52.174 | 3.12 | 0.00 | 0.00 | 3.02 |
3333 | 6584 | 1.264749 | TTGCCAGGACTACAGCCGAT | 61.265 | 55.000 | 0.00 | 0.00 | 0.00 | 4.18 |
3336 | 6587 | 0.253044 | TCATTGCCAGGACTACAGCC | 59.747 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
3339 | 6590 | 3.008923 | TGTTCATCATTGCCAGGACTACA | 59.991 | 43.478 | 0.00 | 0.00 | 0.00 | 2.74 |
3363 | 6614 | 7.274250 | GCAGCAGACAACAAAAGGATAATAAAG | 59.726 | 37.037 | 0.00 | 0.00 | 0.00 | 1.85 |
3402 | 6653 | 1.852157 | TCCCCTGCACCAGACCAAT | 60.852 | 57.895 | 0.00 | 0.00 | 32.44 | 3.16 |
3500 | 6751 | 0.178958 | GGGGAGGCTAGAGATTCCGA | 60.179 | 60.000 | 0.00 | 0.00 | 0.00 | 4.55 |
3546 | 6797 | 4.484236 | CTGTGAGAACAAACAAAACTGCA | 58.516 | 39.130 | 0.00 | 0.00 | 0.00 | 4.41 |
3663 | 6916 | 4.019591 | AGCCGGTAAAGGTTACAGAAGAAT | 60.020 | 41.667 | 1.90 | 0.00 | 0.00 | 2.40 |
3702 | 6975 | 3.155897 | CCTAGCAGGCTCCTACCAT | 57.844 | 57.895 | 0.00 | 0.00 | 0.00 | 3.55 |
3746 | 7019 | 0.321671 | AACACACCGGATCCACAGAG | 59.678 | 55.000 | 9.46 | 0.94 | 0.00 | 3.35 |
3832 | 7106 | 4.355543 | TCGGCTTGTAGATTCAAAATGC | 57.644 | 40.909 | 0.00 | 0.00 | 0.00 | 3.56 |
3937 | 7211 | 9.713740 | GCAAGTACTTTGAGATCATTTATCTTG | 57.286 | 33.333 | 5.07 | 0.00 | 45.35 | 3.02 |
3985 | 7264 | 6.099413 | AGTTCATAAGATTCAGCTGATCAGGA | 59.901 | 38.462 | 23.89 | 10.96 | 0.00 | 3.86 |
4026 | 7680 | 1.780309 | TCTGTGGTCTTTCATTGGGGT | 59.220 | 47.619 | 0.00 | 0.00 | 0.00 | 4.95 |
4036 | 7690 | 4.141390 | ACATCTTGGTTTCTCTGTGGTCTT | 60.141 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
4070 | 7724 | 3.795688 | TTGTTTCATCAGAGGGCTTCT | 57.204 | 42.857 | 0.00 | 0.00 | 36.25 | 2.85 |
4078 | 7733 | 4.163441 | TCCTGGTGTTTGTTTCATCAGA | 57.837 | 40.909 | 7.62 | 0.00 | 44.08 | 3.27 |
4087 | 7742 | 3.370104 | TCCATTTGTTCCTGGTGTTTGT | 58.630 | 40.909 | 0.00 | 0.00 | 34.03 | 2.83 |
4094 | 7749 | 0.527565 | CGGCTTCCATTTGTTCCTGG | 59.472 | 55.000 | 0.00 | 0.00 | 0.00 | 4.45 |
4098 | 7753 | 1.202114 | TCATGCGGCTTCCATTTGTTC | 59.798 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
4100 | 7755 | 1.406539 | GATCATGCGGCTTCCATTTGT | 59.593 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
4113 | 7768 | 2.224606 | CTGGTGTATGGGTGATCATGC | 58.775 | 52.381 | 0.00 | 0.00 | 0.00 | 4.06 |
4147 | 7802 | 4.202673 | ACTGGTGTTTGATTTATCTGGGGT | 60.203 | 41.667 | 0.00 | 0.00 | 0.00 | 4.95 |
4156 | 7811 | 6.068010 | TCCATCTGTTACTGGTGTTTGATTT | 58.932 | 36.000 | 2.05 | 0.00 | 34.03 | 2.17 |
4188 | 7843 | 1.452145 | CCCTGGTGTTTGGTCCAACG | 61.452 | 60.000 | 2.98 | 0.00 | 33.06 | 4.10 |
4347 | 8002 | 6.374333 | TCAGGTTAAGTTGATAAATCTGGCAC | 59.626 | 38.462 | 0.00 | 0.00 | 0.00 | 5.01 |
4358 | 8013 | 3.865745 | CGCGAGATTCAGGTTAAGTTGAT | 59.134 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
4400 | 8055 | 2.879756 | GCCCCTTCTATGTTCAACAGCA | 60.880 | 50.000 | 0.00 | 0.00 | 0.00 | 4.41 |
4401 | 8056 | 1.745653 | GCCCCTTCTATGTTCAACAGC | 59.254 | 52.381 | 0.00 | 0.00 | 0.00 | 4.40 |
4402 | 8057 | 3.071874 | TGCCCCTTCTATGTTCAACAG | 57.928 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
4418 | 8073 | 9.243105 | AGGTATATATTTTGTGATGTAATGCCC | 57.757 | 33.333 | 0.00 | 0.00 | 0.00 | 5.36 |
4434 | 8089 | 9.896645 | CAATGCTCCAGATTACAGGTATATATT | 57.103 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
4440 | 8095 | 5.189736 | ACTTCAATGCTCCAGATTACAGGTA | 59.810 | 40.000 | 0.00 | 0.00 | 0.00 | 3.08 |
4441 | 8096 | 4.018960 | ACTTCAATGCTCCAGATTACAGGT | 60.019 | 41.667 | 0.00 | 0.00 | 0.00 | 4.00 |
4467 | 8122 | 6.907853 | TTGACACATCCATGGTGAAAATTA | 57.092 | 33.333 | 12.58 | 0.00 | 39.53 | 1.40 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.