Multiple sequence alignment - TraesCS5A01G300100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G300100 chr5A 100.000 3698 0 0 1 3698 509216290 509219987 0.000000e+00 6830.0
1 TraesCS5A01G300100 chr5A 86.306 314 36 7 3387 3698 554343724 554344032 5.920000e-88 335.0
2 TraesCS5A01G300100 chr5B 95.601 2296 65 11 662 2933 486042394 486040111 0.000000e+00 3648.0
3 TraesCS5A01G300100 chr5B 96.811 439 11 3 3260 3697 486040113 486039677 0.000000e+00 730.0
4 TraesCS5A01G300100 chr5B 88.506 87 10 0 1266 1352 486041871 486041785 5.050000e-19 106.0
5 TraesCS5A01G300100 chr5D 95.945 2195 74 4 711 2891 404875701 404873508 0.000000e+00 3546.0
6 TraesCS5A01G300100 chr5D 90.000 440 38 6 3261 3698 404873473 404873038 6.930000e-157 564.0
7 TraesCS5A01G300100 chr5D 89.671 213 20 2 226 437 404876926 404876715 1.690000e-68 270.0
8 TraesCS5A01G300100 chr5D 91.061 179 12 4 196 374 405153721 405153547 4.770000e-59 239.0
9 TraesCS5A01G300100 chr5D 92.715 151 7 2 1 151 404877056 404876910 8.040000e-52 215.0
10 TraesCS5A01G300100 chr7A 95.181 332 12 2 2931 3259 269963235 269963565 4.230000e-144 521.0
11 TraesCS5A01G300100 chr6D 95.925 319 13 0 2941 3259 76002881 76002563 5.470000e-143 518.0
12 TraesCS5A01G300100 chr6A 95.137 329 13 1 2931 3259 309873305 309872980 1.970000e-142 516.0
13 TraesCS5A01G300100 chr6A 93.958 331 20 0 2931 3261 190606812 190607142 5.510000e-138 501.0
14 TraesCS5A01G300100 chr6A 88.000 50 6 0 153 202 554302600 554302649 3.990000e-05 60.2
15 TraesCS5A01G300100 chr3A 94.529 329 18 0 2931 3259 594024562 594024234 3.290000e-140 508.0
16 TraesCS5A01G300100 chr3A 93.921 329 20 0 2931 3259 675345646 675345974 7.130000e-137 497.0
17 TraesCS5A01G300100 chr3A 94.375 320 17 1 2941 3259 545904562 545904243 1.190000e-134 490.0
18 TraesCS5A01G300100 chr1D 94.529 329 15 1 2931 3259 326152077 326152402 4.260000e-139 505.0
19 TraesCS5A01G300100 chr3D 94.357 319 17 1 2941 3259 574778497 574778180 4.290000e-134 488.0
20 TraesCS5A01G300100 chr2A 86.306 314 36 7 3387 3698 572450803 572451111 5.920000e-88 335.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G300100 chr5A 509216290 509219987 3697 False 6830.000000 6830 100.000000 1 3698 1 chr5A.!!$F1 3697
1 TraesCS5A01G300100 chr5B 486039677 486042394 2717 True 1494.666667 3648 93.639333 662 3697 3 chr5B.!!$R1 3035
2 TraesCS5A01G300100 chr5D 404873038 404877056 4018 True 1148.750000 3546 92.082750 1 3698 4 chr5D.!!$R2 3697

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
490 492 0.179018 GTGCTGTCTTGGTGGACCTT 60.179 55.0 0.00 0.0 35.54 3.50 F
621 623 0.253044 TTGCTGAGGCGGCTTATCTT 59.747 50.0 14.76 0.0 42.25 2.40 F
1741 2488 0.321122 CTTCGGGCTCAAAGCAGACT 60.321 55.0 0.86 0.0 44.75 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1755 2502 0.032815 TCAGCACGTCGATCAACCAA 59.967 50.0 0.0 0.0 0.00 3.67 R
1767 2514 0.455633 GCTTGGATTTGCTCAGCACG 60.456 55.0 0.0 0.0 38.71 5.34 R
2981 3737 0.030092 CCCACTCCATCCTTCCCCTA 60.030 60.0 0.0 0.0 0.00 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 114 7.012989 GCCTGTTAAGTTTATATACAAGGTGGG 59.987 40.741 0.00 0.00 0.00 4.61
141 142 5.750067 GTCAAAACTGTTGATGCAAAGATGT 59.250 36.000 0.00 0.00 0.00 3.06
142 143 6.917477 GTCAAAACTGTTGATGCAAAGATGTA 59.083 34.615 0.00 0.00 0.00 2.29
143 144 7.596248 GTCAAAACTGTTGATGCAAAGATGTAT 59.404 33.333 0.00 0.00 34.28 2.29
144 145 7.595875 TCAAAACTGTTGATGCAAAGATGTATG 59.404 33.333 0.00 0.00 31.47 2.39
145 146 6.579666 AACTGTTGATGCAAAGATGTATGT 57.420 33.333 0.00 0.00 31.47 2.29
146 147 5.946298 ACTGTTGATGCAAAGATGTATGTG 58.054 37.500 0.00 0.00 31.47 3.21
147 148 5.106038 ACTGTTGATGCAAAGATGTATGTGG 60.106 40.000 0.00 0.00 31.47 4.17
148 149 5.008980 TGTTGATGCAAAGATGTATGTGGA 58.991 37.500 0.00 0.00 31.47 4.02
149 150 5.106197 TGTTGATGCAAAGATGTATGTGGAC 60.106 40.000 0.00 0.00 31.47 4.02
150 151 3.947196 TGATGCAAAGATGTATGTGGACC 59.053 43.478 0.00 0.00 31.47 4.46
151 152 3.719268 TGCAAAGATGTATGTGGACCT 57.281 42.857 0.00 0.00 0.00 3.85
152 153 4.835284 TGCAAAGATGTATGTGGACCTA 57.165 40.909 0.00 0.00 0.00 3.08
153 154 4.513442 TGCAAAGATGTATGTGGACCTAC 58.487 43.478 0.00 0.00 0.00 3.18
154 155 3.877508 GCAAAGATGTATGTGGACCTACC 59.122 47.826 0.00 0.00 39.54 3.18
155 156 8.276950 ATGCAAAGATGTATGTGGACCTACCA 62.277 42.308 0.00 0.00 37.09 3.25
173 174 3.252974 CCAGGTGGTCAGCTTAGTAAG 57.747 52.381 5.47 5.47 36.98 2.34
191 192 8.964420 TTAGTAAGCTATCAACAAACATTTGC 57.036 30.769 4.25 0.00 41.79 3.68
192 193 6.980593 AGTAAGCTATCAACAAACATTTGCA 58.019 32.000 4.25 0.00 41.79 4.08
193 194 7.432869 AGTAAGCTATCAACAAACATTTGCAA 58.567 30.769 0.00 0.00 41.79 4.08
194 195 8.090214 AGTAAGCTATCAACAAACATTTGCAAT 58.910 29.630 0.00 0.00 41.79 3.56
195 196 6.956299 AGCTATCAACAAACATTTGCAATC 57.044 33.333 0.00 0.00 41.79 2.67
196 197 6.457355 AGCTATCAACAAACATTTGCAATCA 58.543 32.000 0.00 0.00 41.79 2.57
197 198 6.930164 AGCTATCAACAAACATTTGCAATCAA 59.070 30.769 0.00 0.00 41.79 2.57
198 199 7.441760 AGCTATCAACAAACATTTGCAATCAAA 59.558 29.630 0.00 0.00 45.24 2.69
199 200 7.742963 GCTATCAACAAACATTTGCAATCAAAG 59.257 33.333 0.00 0.00 44.47 2.77
200 201 7.789273 ATCAACAAACATTTGCAATCAAAGA 57.211 28.000 0.00 0.00 44.47 2.52
201 202 7.789273 TCAACAAACATTTGCAATCAAAGAT 57.211 28.000 0.00 0.00 44.47 2.40
202 203 7.631822 TCAACAAACATTTGCAATCAAAGATG 58.368 30.769 0.00 2.15 44.47 2.90
203 204 6.548441 ACAAACATTTGCAATCAAAGATGG 57.452 33.333 0.00 0.00 44.47 3.51
204 205 6.289834 ACAAACATTTGCAATCAAAGATGGA 58.710 32.000 0.00 0.00 44.47 3.41
205 206 6.938030 ACAAACATTTGCAATCAAAGATGGAT 59.062 30.769 0.00 0.00 44.47 3.41
206 207 8.095792 ACAAACATTTGCAATCAAAGATGGATA 58.904 29.630 0.00 0.00 44.47 2.59
207 208 8.600625 CAAACATTTGCAATCAAAGATGGATAG 58.399 33.333 0.00 0.00 44.47 2.08
208 209 6.812998 ACATTTGCAATCAAAGATGGATAGG 58.187 36.000 0.00 0.00 44.47 2.57
209 210 5.857471 TTTGCAATCAAAGATGGATAGGG 57.143 39.130 0.00 0.00 37.28 3.53
210 211 4.794311 TGCAATCAAAGATGGATAGGGA 57.206 40.909 0.00 0.00 0.00 4.20
211 212 4.464008 TGCAATCAAAGATGGATAGGGAC 58.536 43.478 0.00 0.00 0.00 4.46
212 213 3.823304 GCAATCAAAGATGGATAGGGACC 59.177 47.826 0.00 0.00 0.00 4.46
213 214 4.446889 GCAATCAAAGATGGATAGGGACCT 60.447 45.833 0.00 0.00 0.00 3.85
214 215 5.699143 CAATCAAAGATGGATAGGGACCTT 58.301 41.667 0.00 0.00 0.00 3.50
215 216 6.691491 GCAATCAAAGATGGATAGGGACCTTA 60.691 42.308 0.00 0.00 0.00 2.69
216 217 7.465116 CAATCAAAGATGGATAGGGACCTTAT 58.535 38.462 0.00 0.00 0.00 1.73
217 218 6.688073 TCAAAGATGGATAGGGACCTTATC 57.312 41.667 13.94 13.94 0.00 1.75
218 219 5.246203 TCAAAGATGGATAGGGACCTTATCG 59.754 44.000 15.41 2.78 0.00 2.92
219 220 3.100671 AGATGGATAGGGACCTTATCGC 58.899 50.000 15.41 10.11 40.60 4.58
220 221 2.391926 TGGATAGGGACCTTATCGCA 57.608 50.000 15.41 12.12 42.75 5.10
221 222 2.684943 TGGATAGGGACCTTATCGCAA 58.315 47.619 15.41 3.60 42.75 4.85
222 223 3.042682 TGGATAGGGACCTTATCGCAAA 58.957 45.455 15.41 1.50 42.75 3.68
223 224 3.456644 TGGATAGGGACCTTATCGCAAAA 59.543 43.478 15.41 0.00 42.75 2.44
224 225 4.080243 TGGATAGGGACCTTATCGCAAAAA 60.080 41.667 15.41 0.00 42.75 1.94
252 253 7.595488 AGATGAATGTGGACCCCTAATTTATT 58.405 34.615 0.00 0.00 0.00 1.40
258 259 8.996651 ATGTGGACCCCTAATTTATTAAAGAG 57.003 34.615 0.00 0.00 0.00 2.85
259 260 8.165267 TGTGGACCCCTAATTTATTAAAGAGA 57.835 34.615 0.00 0.00 0.00 3.10
282 283 7.856415 AGAGAAGAAGGCAATATACTCAGTTT 58.144 34.615 0.00 0.00 0.00 2.66
284 285 9.771534 GAGAAGAAGGCAATATACTCAGTTTAT 57.228 33.333 0.00 0.00 0.00 1.40
353 354 7.272037 TGAAATTAAGGTGGAACTCTTTCAC 57.728 36.000 0.00 0.00 36.74 3.18
403 405 6.959606 ACCCCAAACTCTATCATATATGCT 57.040 37.500 7.92 0.77 0.00 3.79
406 408 6.413052 CCCAAACTCTATCATATATGCTGCT 58.587 40.000 7.92 0.00 0.00 4.24
407 409 7.365028 CCCCAAACTCTATCATATATGCTGCTA 60.365 40.741 7.92 0.00 0.00 3.49
446 448 9.784531 ATATTCATCTTAATATATTGGCCGAGG 57.215 33.333 8.28 1.88 31.69 4.63
447 449 5.428253 TCATCTTAATATATTGGCCGAGGC 58.572 41.667 8.28 5.37 41.06 4.70
448 450 3.857052 TCTTAATATATTGGCCGAGGCG 58.143 45.455 8.28 0.00 43.06 5.52
449 451 2.018542 TAATATATTGGCCGAGGCGC 57.981 50.000 8.28 0.00 43.06 6.53
450 452 0.324943 AATATATTGGCCGAGGCGCT 59.675 50.000 7.64 0.00 43.06 5.92
452 454 0.970640 TATATTGGCCGAGGCGCTTA 59.029 50.000 7.64 0.00 43.06 3.09
453 455 0.320771 ATATTGGCCGAGGCGCTTAG 60.321 55.000 7.64 0.00 43.06 2.18
454 456 2.377628 TATTGGCCGAGGCGCTTAGG 62.378 60.000 14.48 14.48 43.06 2.69
463 465 3.272334 GCGCTTAGGCCATGACGG 61.272 66.667 5.01 0.00 38.11 4.79
464 466 2.588877 CGCTTAGGCCATGACGGG 60.589 66.667 5.01 0.00 34.06 5.28
472 474 2.044053 CCATGACGGGGCAATGGT 60.044 61.111 0.00 0.00 0.00 3.55
485 487 0.599558 CAATGGTGCTGTCTTGGTGG 59.400 55.000 0.00 0.00 0.00 4.61
486 488 0.478072 AATGGTGCTGTCTTGGTGGA 59.522 50.000 0.00 0.00 0.00 4.02
487 489 0.250901 ATGGTGCTGTCTTGGTGGAC 60.251 55.000 0.00 0.00 36.81 4.02
488 490 1.600916 GGTGCTGTCTTGGTGGACC 60.601 63.158 0.00 0.00 35.54 4.46
489 491 1.451936 GTGCTGTCTTGGTGGACCT 59.548 57.895 0.00 0.00 35.54 3.85
490 492 0.179018 GTGCTGTCTTGGTGGACCTT 60.179 55.000 0.00 0.00 35.54 3.50
491 493 0.550914 TGCTGTCTTGGTGGACCTTT 59.449 50.000 0.00 0.00 35.54 3.11
492 494 1.771854 TGCTGTCTTGGTGGACCTTTA 59.228 47.619 0.00 0.00 35.54 1.85
493 495 2.152016 GCTGTCTTGGTGGACCTTTAC 58.848 52.381 0.00 0.00 35.54 2.01
494 496 2.486548 GCTGTCTTGGTGGACCTTTACA 60.487 50.000 0.00 0.00 35.54 2.41
495 497 3.815809 CTGTCTTGGTGGACCTTTACAA 58.184 45.455 0.00 0.00 35.54 2.41
496 498 3.547746 TGTCTTGGTGGACCTTTACAAC 58.452 45.455 0.00 0.00 35.54 3.32
497 499 3.054287 TGTCTTGGTGGACCTTTACAACA 60.054 43.478 0.00 0.00 35.54 3.33
500 502 3.935818 TGGTGGACCTTTACAACAAGA 57.064 42.857 0.00 0.00 36.82 3.02
501 503 4.447138 TGGTGGACCTTTACAACAAGAT 57.553 40.909 0.00 0.00 36.82 2.40
502 504 4.394729 TGGTGGACCTTTACAACAAGATC 58.605 43.478 0.00 0.00 36.82 2.75
503 505 3.756963 GGTGGACCTTTACAACAAGATCC 59.243 47.826 0.00 0.00 0.00 3.36
504 506 4.506802 GGTGGACCTTTACAACAAGATCCT 60.507 45.833 0.00 0.00 0.00 3.24
505 507 5.070685 GTGGACCTTTACAACAAGATCCTT 58.929 41.667 0.00 0.00 0.00 3.36
506 508 5.048713 GTGGACCTTTACAACAAGATCCTTG 60.049 44.000 5.26 5.26 0.00 3.61
507 509 5.070685 GGACCTTTACAACAAGATCCTTGT 58.929 41.667 6.53 6.53 34.89 3.16
508 510 5.535030 GGACCTTTACAACAAGATCCTTGTT 59.465 40.000 16.62 16.62 42.75 2.83
516 518 2.036346 ACAAGATCCTTGTTGCAAAGCC 59.964 45.455 0.00 0.00 29.38 4.35
517 519 1.999648 AGATCCTTGTTGCAAAGCCA 58.000 45.000 0.00 0.00 0.00 4.75
518 520 2.532843 AGATCCTTGTTGCAAAGCCAT 58.467 42.857 0.00 0.00 0.00 4.40
519 521 2.232941 AGATCCTTGTTGCAAAGCCATG 59.767 45.455 0.00 0.00 0.00 3.66
520 522 1.702182 TCCTTGTTGCAAAGCCATGA 58.298 45.000 0.00 0.00 0.00 3.07
524 526 1.401761 TGTTGCAAAGCCATGACTGT 58.598 45.000 0.00 0.00 0.00 3.55
525 527 2.580962 TGTTGCAAAGCCATGACTGTA 58.419 42.857 0.00 0.00 0.00 2.74
526 528 2.954989 TGTTGCAAAGCCATGACTGTAA 59.045 40.909 0.00 0.00 0.00 2.41
528 530 2.580962 TGCAAAGCCATGACTGTAACA 58.419 42.857 0.00 0.00 0.00 2.41
532 534 2.867109 AGCCATGACTGTAACAAGCT 57.133 45.000 0.00 0.00 0.00 3.74
533 535 3.981071 AGCCATGACTGTAACAAGCTA 57.019 42.857 0.00 0.00 32.15 3.32
535 537 4.848357 AGCCATGACTGTAACAAGCTAAT 58.152 39.130 0.00 0.00 32.15 1.73
536 538 5.256474 AGCCATGACTGTAACAAGCTAATT 58.744 37.500 0.00 0.00 32.15 1.40
537 539 5.124457 AGCCATGACTGTAACAAGCTAATTG 59.876 40.000 0.00 0.00 45.01 2.32
550 552 5.977731 CAAGCTAATTGTTGCAAAGGTTTC 58.022 37.500 0.00 0.00 33.95 2.78
551 553 4.631131 AGCTAATTGTTGCAAAGGTTTCC 58.369 39.130 0.00 0.00 0.00 3.13
552 554 4.100808 AGCTAATTGTTGCAAAGGTTTCCA 59.899 37.500 0.00 0.00 0.00 3.53
553 555 4.996758 GCTAATTGTTGCAAAGGTTTCCAT 59.003 37.500 0.00 0.00 0.00 3.41
554 556 5.469760 GCTAATTGTTGCAAAGGTTTCCATT 59.530 36.000 0.00 0.00 0.00 3.16
555 557 6.017192 GCTAATTGTTGCAAAGGTTTCCATTT 60.017 34.615 0.00 0.00 0.00 2.32
556 558 5.754543 ATTGTTGCAAAGGTTTCCATTTG 57.245 34.783 0.00 0.00 39.01 2.32
557 559 3.539604 TGTTGCAAAGGTTTCCATTTGG 58.460 40.909 0.00 0.00 36.99 3.28
558 560 2.252976 TGCAAAGGTTTCCATTTGGC 57.747 45.000 2.59 0.00 36.99 4.52
560 562 2.145536 GCAAAGGTTTCCATTTGGCTG 58.854 47.619 2.59 0.00 36.99 4.85
561 563 2.224257 GCAAAGGTTTCCATTTGGCTGA 60.224 45.455 2.59 0.00 36.99 4.26
562 564 3.656559 CAAAGGTTTCCATTTGGCTGAG 58.343 45.455 0.00 0.00 33.68 3.35
563 565 2.978156 AGGTTTCCATTTGGCTGAGA 57.022 45.000 0.00 0.00 34.44 3.27
564 566 2.519013 AGGTTTCCATTTGGCTGAGAC 58.481 47.619 0.00 0.00 34.44 3.36
565 567 1.200020 GGTTTCCATTTGGCTGAGACG 59.800 52.381 0.00 0.00 34.44 4.18
566 568 2.151202 GTTTCCATTTGGCTGAGACGA 58.849 47.619 0.00 0.00 34.44 4.20
567 569 2.749621 GTTTCCATTTGGCTGAGACGAT 59.250 45.455 0.00 0.00 34.44 3.73
569 571 3.459232 TCCATTTGGCTGAGACGATAG 57.541 47.619 0.00 0.00 37.32 2.08
570 572 3.031013 TCCATTTGGCTGAGACGATAGA 58.969 45.455 0.00 0.00 35.67 1.98
571 573 3.643320 TCCATTTGGCTGAGACGATAGAT 59.357 43.478 0.00 0.00 35.67 1.98
572 574 3.993081 CCATTTGGCTGAGACGATAGATC 59.007 47.826 0.00 0.00 41.38 2.75
573 575 7.507786 TCCATTTGGCTGAGACGATAGATCG 62.508 48.000 10.29 10.29 44.71 3.69
584 586 3.335786 CGATAGATCGGACGACTGTTT 57.664 47.619 3.95 0.00 45.93 2.83
585 587 3.289911 CGATAGATCGGACGACTGTTTC 58.710 50.000 3.95 0.00 45.93 2.78
593 595 2.355363 CGACTGTTTCGGACGGCA 60.355 61.111 0.00 0.00 44.60 5.69
594 596 1.736645 CGACTGTTTCGGACGGCAT 60.737 57.895 0.00 0.00 44.60 4.40
595 597 1.683790 CGACTGTTTCGGACGGCATC 61.684 60.000 0.00 0.00 44.60 3.91
596 598 1.359459 GACTGTTTCGGACGGCATCC 61.359 60.000 0.00 0.00 45.20 3.51
607 609 3.499737 GGCATCCGACGGTTGCTG 61.500 66.667 36.02 21.01 44.92 4.41
608 610 2.434185 GCATCCGACGGTTGCTGA 60.434 61.111 32.76 7.86 42.98 4.26
609 611 2.456119 GCATCCGACGGTTGCTGAG 61.456 63.158 32.76 8.43 42.98 3.35
610 612 1.811266 CATCCGACGGTTGCTGAGG 60.811 63.158 14.79 0.00 0.00 3.86
611 613 3.665675 ATCCGACGGTTGCTGAGGC 62.666 63.158 14.79 0.00 39.26 4.70
617 619 2.046314 GGTTGCTGAGGCGGCTTA 60.046 61.111 14.76 8.44 42.25 3.09
618 620 1.452108 GGTTGCTGAGGCGGCTTAT 60.452 57.895 14.76 0.00 42.25 1.73
620 622 0.462759 GTTGCTGAGGCGGCTTATCT 60.463 55.000 14.76 0.00 42.25 1.98
621 623 0.253044 TTGCTGAGGCGGCTTATCTT 59.747 50.000 14.76 0.00 42.25 2.40
622 624 1.119684 TGCTGAGGCGGCTTATCTTA 58.880 50.000 14.76 0.00 42.25 2.10
623 625 1.694150 TGCTGAGGCGGCTTATCTTAT 59.306 47.619 14.76 0.00 42.25 1.73
624 626 2.289072 TGCTGAGGCGGCTTATCTTATC 60.289 50.000 14.76 0.00 42.25 1.75
625 627 2.600731 CTGAGGCGGCTTATCTTATCG 58.399 52.381 14.76 0.00 0.00 2.92
628 630 3.258372 TGAGGCGGCTTATCTTATCGATT 59.742 43.478 14.76 0.00 33.48 3.34
629 631 4.246458 GAGGCGGCTTATCTTATCGATTT 58.754 43.478 14.76 0.00 33.48 2.17
630 632 5.047590 TGAGGCGGCTTATCTTATCGATTTA 60.048 40.000 14.76 0.00 33.48 1.40
633 635 5.810587 GGCGGCTTATCTTATCGATTTATCA 59.189 40.000 1.71 0.00 33.48 2.15
634 636 6.480320 GGCGGCTTATCTTATCGATTTATCAT 59.520 38.462 1.71 0.00 33.48 2.45
636 638 7.306866 GCGGCTTATCTTATCGATTTATCATCC 60.307 40.741 1.71 0.00 33.48 3.51
637 639 7.096436 CGGCTTATCTTATCGATTTATCATCCG 60.096 40.741 1.71 5.10 33.48 4.18
638 640 7.169982 GGCTTATCTTATCGATTTATCATCCGG 59.830 40.741 1.71 0.00 33.48 5.14
639 641 7.707035 GCTTATCTTATCGATTTATCATCCGGT 59.293 37.037 1.71 0.00 33.48 5.28
641 643 5.720202 TCTTATCGATTTATCATCCGGTGG 58.280 41.667 1.71 0.00 0.00 4.61
643 645 4.617253 ATCGATTTATCATCCGGTGGAA 57.383 40.909 0.00 0.00 34.34 3.53
644 646 4.409718 TCGATTTATCATCCGGTGGAAA 57.590 40.909 0.00 4.71 34.34 3.13
647 649 1.658994 TTATCATCCGGTGGAAACGC 58.341 50.000 0.00 0.00 34.34 4.84
648 650 0.537653 TATCATCCGGTGGAAACGCA 59.462 50.000 0.00 0.00 44.70 5.24
649 651 0.744414 ATCATCCGGTGGAAACGCAG 60.744 55.000 0.00 0.00 44.70 5.18
651 653 3.545124 ATCCGGTGGAAACGCAGCA 62.545 57.895 0.00 0.00 44.70 4.41
652 654 2.819984 ATCCGGTGGAAACGCAGCAT 62.820 55.000 0.00 0.00 44.70 3.79
653 655 2.625823 CCGGTGGAAACGCAGCATT 61.626 57.895 0.00 0.00 44.70 3.56
654 656 1.442520 CGGTGGAAACGCAGCATTG 60.443 57.895 0.00 0.00 44.70 2.82
715 1457 9.405587 TCAGCTAAGTTTAAATTTTGTATGCAC 57.594 29.630 0.94 0.00 0.00 4.57
724 1466 6.909550 AAATTTTGTATGCACCAGGAAGTA 57.090 33.333 0.00 0.00 0.00 2.24
750 1492 0.666577 GTCCGTACAGCAAACGCTCT 60.667 55.000 0.00 0.00 37.77 4.09
858 1605 2.833582 ATCGTCCGTCATCCGCCT 60.834 61.111 0.00 0.00 34.38 5.52
861 1608 2.264794 GTCCGTCATCCGCCTTGT 59.735 61.111 0.00 0.00 34.38 3.16
1262 2009 2.442272 CCCCGATGTCTCCGAGGT 60.442 66.667 0.00 0.00 0.00 3.85
1311 2058 1.745890 CGTGGACCAGGACTTCACA 59.254 57.895 8.56 0.00 0.00 3.58
1342 2089 2.060383 CCAGGCCTCGATGTCTCCA 61.060 63.158 0.00 0.00 0.00 3.86
1401 2148 4.373116 GAGCCGAGGGTTGCGTCA 62.373 66.667 0.00 0.00 0.00 4.35
1707 2454 0.674534 AGGAAGCTGTCGAGACGTTT 59.325 50.000 0.00 0.00 0.00 3.60
1741 2488 0.321122 CTTCGGGCTCAAAGCAGACT 60.321 55.000 0.86 0.00 44.75 3.24
1755 2502 9.107177 CTCAAAGCAGACTTATCAGATTACAAT 57.893 33.333 0.00 0.00 34.05 2.71
1767 2514 6.662414 TCAGATTACAATTGGTTGATCGAC 57.338 37.500 10.83 4.31 38.71 4.20
1863 2610 3.170717 TCCCGATTTGAAGACCTACACT 58.829 45.455 0.00 0.00 0.00 3.55
2235 2982 1.404391 CAGCATGCCTTCAAGATGGTC 59.596 52.381 15.66 0.00 0.00 4.02
2604 3351 6.206634 CACCTGGTCAGCTTTTCAGTAATTTA 59.793 38.462 0.00 0.00 0.00 1.40
2888 3644 2.289592 AGGGTGAGAGAGTTACGTGT 57.710 50.000 0.00 0.00 0.00 4.49
2895 3651 6.426025 GGGTGAGAGAGTTACGTGTTTAAATT 59.574 38.462 0.00 0.00 0.00 1.82
2933 3689 3.963374 AGCTCAGCTAAGATGGTGTGATA 59.037 43.478 0.00 0.00 36.99 2.15
2934 3690 4.054671 GCTCAGCTAAGATGGTGTGATAC 58.945 47.826 0.00 0.00 36.85 2.24
2935 3691 7.193717 AGCTCAGCTAAGATGGTGTGATACC 62.194 48.000 0.00 0.00 43.37 2.73
2957 3713 4.573261 TGGTAGAACCAGGGGTCC 57.427 61.111 0.00 0.00 44.79 4.46
2958 3714 1.873289 TGGTAGAACCAGGGGTCCT 59.127 57.895 0.00 0.00 44.79 3.85
2959 3715 1.095130 TGGTAGAACCAGGGGTCCTA 58.905 55.000 0.00 0.00 44.79 2.94
2960 3716 1.273438 TGGTAGAACCAGGGGTCCTAC 60.273 57.143 3.46 3.46 44.79 3.18
2961 3717 1.493861 GTAGAACCAGGGGTCCTACC 58.506 60.000 0.00 0.00 33.12 3.18
2962 3718 0.032813 TAGAACCAGGGGTCCTACCG 60.033 60.000 0.00 0.00 39.83 4.02
2963 3719 2.285144 AACCAGGGGTCCTACCGG 60.285 66.667 0.00 0.00 39.83 5.28
2964 3720 2.810488 GAACCAGGGGTCCTACCGGA 62.810 65.000 9.46 0.00 39.83 5.14
2965 3721 2.190904 AACCAGGGGTCCTACCGGAT 62.191 60.000 9.46 0.00 42.43 4.18
2966 3722 1.837499 CCAGGGGTCCTACCGGATC 60.837 68.421 9.46 0.00 42.43 3.36
2967 3723 1.233369 CAGGGGTCCTACCGGATCT 59.767 63.158 9.46 0.00 42.43 2.75
2968 3724 1.115930 CAGGGGTCCTACCGGATCTG 61.116 65.000 9.46 0.00 42.43 2.90
2969 3725 2.508751 GGGGTCCTACCGGATCTGC 61.509 68.421 9.46 0.00 42.43 4.26
2970 3726 1.457831 GGGTCCTACCGGATCTGCT 60.458 63.158 9.46 0.00 42.43 4.24
2971 3727 1.465200 GGGTCCTACCGGATCTGCTC 61.465 65.000 9.46 0.00 42.43 4.26
2972 3728 0.468400 GGTCCTACCGGATCTGCTCT 60.468 60.000 9.46 0.00 42.43 4.09
2973 3729 0.671251 GTCCTACCGGATCTGCTCTG 59.329 60.000 9.46 0.00 42.43 3.35
2978 3734 3.947173 CGGATCTGCTCTGGAGGT 58.053 61.111 0.00 0.00 0.00 3.85
2979 3735 2.206635 CGGATCTGCTCTGGAGGTT 58.793 57.895 0.00 0.00 0.00 3.50
2980 3736 0.179089 CGGATCTGCTCTGGAGGTTG 60.179 60.000 0.00 0.00 0.00 3.77
2981 3737 0.908198 GGATCTGCTCTGGAGGTTGT 59.092 55.000 0.00 0.00 0.00 3.32
2982 3738 2.111384 GGATCTGCTCTGGAGGTTGTA 58.889 52.381 0.00 0.00 0.00 2.41
2983 3739 2.102252 GGATCTGCTCTGGAGGTTGTAG 59.898 54.545 0.00 0.00 0.00 2.74
2984 3740 1.561643 TCTGCTCTGGAGGTTGTAGG 58.438 55.000 0.00 0.00 0.00 3.18
2985 3741 0.539051 CTGCTCTGGAGGTTGTAGGG 59.461 60.000 0.00 0.00 0.00 3.53
2986 3742 0.909610 TGCTCTGGAGGTTGTAGGGG 60.910 60.000 0.00 0.00 0.00 4.79
2987 3743 0.617820 GCTCTGGAGGTTGTAGGGGA 60.618 60.000 0.00 0.00 0.00 4.81
2988 3744 1.952621 CTCTGGAGGTTGTAGGGGAA 58.047 55.000 0.00 0.00 0.00 3.97
2989 3745 1.834263 CTCTGGAGGTTGTAGGGGAAG 59.166 57.143 0.00 0.00 0.00 3.46
2990 3746 0.912486 CTGGAGGTTGTAGGGGAAGG 59.088 60.000 0.00 0.00 0.00 3.46
2991 3747 0.494551 TGGAGGTTGTAGGGGAAGGA 59.505 55.000 0.00 0.00 0.00 3.36
2992 3748 1.082194 TGGAGGTTGTAGGGGAAGGAT 59.918 52.381 0.00 0.00 0.00 3.24
2993 3749 1.490910 GGAGGTTGTAGGGGAAGGATG 59.509 57.143 0.00 0.00 0.00 3.51
2994 3750 1.490910 GAGGTTGTAGGGGAAGGATGG 59.509 57.143 0.00 0.00 0.00 3.51
2995 3751 1.082194 AGGTTGTAGGGGAAGGATGGA 59.918 52.381 0.00 0.00 0.00 3.41
2996 3752 1.490910 GGTTGTAGGGGAAGGATGGAG 59.509 57.143 0.00 0.00 0.00 3.86
2997 3753 2.197465 GTTGTAGGGGAAGGATGGAGT 58.803 52.381 0.00 0.00 0.00 3.85
2998 3754 1.879575 TGTAGGGGAAGGATGGAGTG 58.120 55.000 0.00 0.00 0.00 3.51
2999 3755 1.132500 GTAGGGGAAGGATGGAGTGG 58.868 60.000 0.00 0.00 0.00 4.00
3000 3756 0.030092 TAGGGGAAGGATGGAGTGGG 60.030 60.000 0.00 0.00 0.00 4.61
3001 3757 1.307866 GGGGAAGGATGGAGTGGGA 60.308 63.158 0.00 0.00 0.00 4.37
3002 3758 1.636769 GGGGAAGGATGGAGTGGGAC 61.637 65.000 0.00 0.00 0.00 4.46
3003 3759 1.522569 GGAAGGATGGAGTGGGACG 59.477 63.158 0.00 0.00 0.00 4.79
3004 3760 1.522569 GAAGGATGGAGTGGGACGG 59.477 63.158 0.00 0.00 0.00 4.79
3005 3761 1.972660 GAAGGATGGAGTGGGACGGG 61.973 65.000 0.00 0.00 0.00 5.28
3006 3762 3.480133 GGATGGAGTGGGACGGGG 61.480 72.222 0.00 0.00 0.00 5.73
3007 3763 4.176752 GATGGAGTGGGACGGGGC 62.177 72.222 0.00 0.00 0.00 5.80
3011 3767 4.530857 GAGTGGGACGGGGCGATG 62.531 72.222 0.00 0.00 0.00 3.84
3013 3769 3.861797 GTGGGACGGGGCGATGAT 61.862 66.667 0.00 0.00 0.00 2.45
3014 3770 3.087253 TGGGACGGGGCGATGATT 61.087 61.111 0.00 0.00 0.00 2.57
3015 3771 2.591715 GGGACGGGGCGATGATTG 60.592 66.667 0.00 0.00 0.00 2.67
3016 3772 2.591715 GGACGGGGCGATGATTGG 60.592 66.667 0.00 0.00 0.00 3.16
3017 3773 2.591715 GACGGGGCGATGATTGGG 60.592 66.667 0.00 0.00 0.00 4.12
3018 3774 4.875713 ACGGGGCGATGATTGGGC 62.876 66.667 0.00 0.00 0.00 5.36
3019 3775 4.569180 CGGGGCGATGATTGGGCT 62.569 66.667 0.00 0.00 0.00 5.19
3020 3776 2.595754 GGGGCGATGATTGGGCTC 60.596 66.667 0.00 0.00 0.00 4.70
3021 3777 2.974698 GGGCGATGATTGGGCTCG 60.975 66.667 0.00 0.00 35.57 5.03
3024 3780 3.341043 CGATGATTGGGCTCGCCG 61.341 66.667 1.24 0.00 36.85 6.46
3025 3781 2.974698 GATGATTGGGCTCGCCGG 60.975 66.667 0.00 0.00 36.85 6.13
3056 3812 4.933064 GCGCGTCGGAGGGAGATG 62.933 72.222 8.43 0.00 0.00 2.90
3057 3813 4.271816 CGCGTCGGAGGGAGATGG 62.272 72.222 0.00 0.00 0.00 3.51
3058 3814 4.593864 GCGTCGGAGGGAGATGGC 62.594 72.222 0.00 0.00 0.00 4.40
3059 3815 4.271816 CGTCGGAGGGAGATGGCG 62.272 72.222 0.00 0.00 0.00 5.69
3060 3816 3.917760 GTCGGAGGGAGATGGCGG 61.918 72.222 0.00 0.00 0.00 6.13
3076 3832 4.603946 GGCGGCGGCTAGGGTTAG 62.604 72.222 27.22 0.00 39.81 2.34
3077 3833 3.534056 GCGGCGGCTAGGGTTAGA 61.534 66.667 9.78 0.00 35.83 2.10
3078 3834 2.728817 CGGCGGCTAGGGTTAGAG 59.271 66.667 7.61 0.00 0.00 2.43
3079 3835 2.857744 CGGCGGCTAGGGTTAGAGG 61.858 68.421 7.61 0.00 0.00 3.69
3080 3836 2.422165 GCGGCTAGGGTTAGAGGC 59.578 66.667 0.00 0.00 35.00 4.70
3082 3838 3.139565 GGCTAGGGTTAGAGGCGG 58.860 66.667 0.00 0.00 0.00 6.13
3083 3839 2.422165 GCTAGGGTTAGAGGCGGC 59.578 66.667 0.00 0.00 0.00 6.53
3084 3840 2.134933 GCTAGGGTTAGAGGCGGCT 61.135 63.158 13.09 13.09 0.00 5.52
3085 3841 0.826672 GCTAGGGTTAGAGGCGGCTA 60.827 60.000 13.24 0.00 0.00 3.93
3086 3842 1.249407 CTAGGGTTAGAGGCGGCTAG 58.751 60.000 13.24 0.00 0.00 3.42
3087 3843 0.178970 TAGGGTTAGAGGCGGCTAGG 60.179 60.000 13.24 0.00 0.00 3.02
3088 3844 2.508751 GGGTTAGAGGCGGCTAGGG 61.509 68.421 13.24 0.00 0.00 3.53
3089 3845 1.761271 GGTTAGAGGCGGCTAGGGT 60.761 63.158 13.24 0.00 0.00 4.34
3090 3846 1.335882 GGTTAGAGGCGGCTAGGGTT 61.336 60.000 13.24 0.00 0.00 4.11
3091 3847 0.104487 GTTAGAGGCGGCTAGGGTTC 59.896 60.000 13.24 0.00 0.00 3.62
3092 3848 1.047034 TTAGAGGCGGCTAGGGTTCC 61.047 60.000 13.24 0.00 0.00 3.62
3097 3853 4.222847 CGGCTAGGGTTCCGGCTC 62.223 72.222 0.00 0.00 41.82 4.70
3098 3854 3.862991 GGCTAGGGTTCCGGCTCC 61.863 72.222 0.00 0.53 0.00 4.70
3099 3855 2.764547 GCTAGGGTTCCGGCTCCT 60.765 66.667 13.24 13.24 34.85 3.69
3100 3856 2.798364 GCTAGGGTTCCGGCTCCTC 61.798 68.421 12.29 4.77 32.46 3.71
3101 3857 1.075896 CTAGGGTTCCGGCTCCTCT 60.076 63.158 12.29 10.56 32.46 3.69
3102 3858 1.381327 TAGGGTTCCGGCTCCTCTG 60.381 63.158 12.29 0.00 32.46 3.35
3103 3859 2.873557 TAGGGTTCCGGCTCCTCTGG 62.874 65.000 12.29 0.00 42.90 3.86
3104 3860 3.787001 GGTTCCGGCTCCTCTGGG 61.787 72.222 0.00 0.00 41.78 4.45
3105 3861 2.683933 GTTCCGGCTCCTCTGGGA 60.684 66.667 0.00 0.00 41.78 4.37
3106 3862 2.683933 TTCCGGCTCCTCTGGGAC 60.684 66.667 0.00 0.00 41.78 4.46
3107 3863 4.779733 TCCGGCTCCTCTGGGACC 62.780 72.222 0.00 0.00 41.78 4.46
3118 3874 3.754043 TGGGACCCAGGCAATAGG 58.246 61.111 9.95 0.00 0.00 2.57
3133 3889 9.927081 CCAGGCAATAGGGATAATAATATTCTT 57.073 33.333 0.00 0.00 0.00 2.52
3160 3916 9.914131 ATTGCTTAATTCCAAAAAGAGTCTTAC 57.086 29.630 5.65 0.00 0.00 2.34
3161 3917 8.458573 TGCTTAATTCCAAAAAGAGTCTTACA 57.541 30.769 5.65 0.00 0.00 2.41
3162 3918 8.908903 TGCTTAATTCCAAAAAGAGTCTTACAA 58.091 29.630 5.65 0.00 0.00 2.41
3163 3919 9.181805 GCTTAATTCCAAAAAGAGTCTTACAAC 57.818 33.333 5.65 0.00 0.00 3.32
3164 3920 9.678941 CTTAATTCCAAAAAGAGTCTTACAACC 57.321 33.333 5.65 0.00 0.00 3.77
3165 3921 7.898014 AATTCCAAAAAGAGTCTTACAACCT 57.102 32.000 5.65 0.00 0.00 3.50
3166 3922 8.990163 AATTCCAAAAAGAGTCTTACAACCTA 57.010 30.769 5.65 0.00 0.00 3.08
3167 3923 9.588096 AATTCCAAAAAGAGTCTTACAACCTAT 57.412 29.630 5.65 0.00 0.00 2.57
3219 3975 9.668497 AGAATTAACCTAAGATAACTTGTGGAC 57.332 33.333 11.58 0.00 37.53 4.02
3220 3976 9.668497 GAATTAACCTAAGATAACTTGTGGACT 57.332 33.333 11.58 3.88 37.53 3.85
3224 3980 8.431910 AACCTAAGATAACTTGTGGACTAAGA 57.568 34.615 11.58 0.00 37.53 2.10
3225 3981 8.611051 ACCTAAGATAACTTGTGGACTAAGAT 57.389 34.615 11.58 0.00 37.53 2.40
3226 3982 9.047947 ACCTAAGATAACTTGTGGACTAAGATT 57.952 33.333 11.58 0.00 37.53 2.40
3227 3983 9.319143 CCTAAGATAACTTGTGGACTAAGATTG 57.681 37.037 0.00 0.00 37.53 2.67
3228 3984 7.617041 AAGATAACTTGTGGACTAAGATTGC 57.383 36.000 0.00 0.00 34.80 3.56
3229 3985 6.116126 AGATAACTTGTGGACTAAGATTGCC 58.884 40.000 0.00 0.00 0.00 4.52
3230 3986 3.073274 ACTTGTGGACTAAGATTGCCC 57.927 47.619 0.00 0.00 0.00 5.36
3231 3987 2.009774 CTTGTGGACTAAGATTGCCCG 58.990 52.381 0.00 0.00 0.00 6.13
3232 3988 0.251916 TGTGGACTAAGATTGCCCGG 59.748 55.000 0.00 0.00 0.00 5.73
3233 3989 0.252197 GTGGACTAAGATTGCCCGGT 59.748 55.000 0.00 0.00 0.00 5.28
3234 3990 0.251916 TGGACTAAGATTGCCCGGTG 59.748 55.000 0.00 0.00 0.00 4.94
3235 3991 0.463833 GGACTAAGATTGCCCGGTGG 60.464 60.000 0.00 0.00 0.00 4.61
3245 4001 2.766651 CCCGGTGGGCCTAGCTAA 60.767 66.667 16.80 0.00 35.35 3.09
3246 4002 2.372074 CCCGGTGGGCCTAGCTAAA 61.372 63.158 16.80 0.00 35.35 1.85
3247 4003 1.153229 CCGGTGGGCCTAGCTAAAC 60.153 63.158 16.80 0.00 0.00 2.01
3248 4004 1.153229 CGGTGGGCCTAGCTAAACC 60.153 63.158 16.80 0.14 0.00 3.27
3249 4005 1.153229 GGTGGGCCTAGCTAAACCG 60.153 63.158 11.59 0.00 0.00 4.44
3250 4006 1.153229 GTGGGCCTAGCTAAACCGG 60.153 63.158 4.53 0.00 0.00 5.28
3251 4007 2.203167 GGGCCTAGCTAAACCGGC 60.203 66.667 12.25 12.25 41.75 6.13
3253 4009 2.587889 GCCTAGCTAAACCGGCCA 59.412 61.111 10.00 0.00 36.56 5.36
3254 4010 1.148498 GCCTAGCTAAACCGGCCAT 59.852 57.895 10.00 0.00 36.56 4.40
3255 4011 0.395312 GCCTAGCTAAACCGGCCATA 59.605 55.000 10.00 0.00 36.56 2.74
3256 4012 1.202722 GCCTAGCTAAACCGGCCATAA 60.203 52.381 10.00 0.00 36.56 1.90
3257 4013 2.490991 CCTAGCTAAACCGGCCATAAC 58.509 52.381 0.00 0.00 0.00 1.89
3258 4014 2.158871 CCTAGCTAAACCGGCCATAACA 60.159 50.000 0.00 0.00 0.00 2.41
3259 4015 2.038387 AGCTAAACCGGCCATAACAG 57.962 50.000 0.00 0.00 0.00 3.16
3351 4107 6.791867 AGCAACTACAACCATAGATAGACA 57.208 37.500 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.022849 GCACTTTCAGTTGCATAGAAACCT 60.023 41.667 5.05 0.00 0.00 3.50
10 11 4.136796 AGTTGCACTTTCAGTTGCATAGA 58.863 39.130 0.00 0.00 34.20 1.98
11 12 4.214971 AGAGTTGCACTTTCAGTTGCATAG 59.785 41.667 0.00 0.00 34.20 2.23
14 15 2.355756 GAGAGTTGCACTTTCAGTTGCA 59.644 45.455 0.00 0.00 33.01 4.08
40 41 4.901197 TGTTATCACTAAAGCCCACTCA 57.099 40.909 0.00 0.00 0.00 3.41
41 42 5.001232 TGTTGTTATCACTAAAGCCCACTC 58.999 41.667 0.00 0.00 0.00 3.51
42 43 4.980573 TGTTGTTATCACTAAAGCCCACT 58.019 39.130 0.00 0.00 0.00 4.00
103 104 5.127491 CAGTTTTGACTAACCCACCTTGTA 58.873 41.667 0.00 0.00 0.00 2.41
105 106 3.951680 ACAGTTTTGACTAACCCACCTTG 59.048 43.478 0.00 0.00 0.00 3.61
113 114 6.972328 TCTTTGCATCAACAGTTTTGACTAAC 59.028 34.615 0.00 0.00 0.00 2.34
153 154 3.252974 CTTACTAAGCTGACCACCTGG 57.747 52.381 0.00 0.00 42.17 4.45
164 165 9.065871 CAAATGTTTGTTGATAGCTTACTAAGC 57.934 33.333 12.25 12.25 42.64 3.09
165 166 9.065871 GCAAATGTTTGTTGATAGCTTACTAAG 57.934 33.333 7.26 0.00 40.24 2.18
166 167 8.572185 TGCAAATGTTTGTTGATAGCTTACTAA 58.428 29.630 7.26 0.00 40.24 2.24
167 168 8.105097 TGCAAATGTTTGTTGATAGCTTACTA 57.895 30.769 7.26 0.00 40.24 1.82
168 169 6.980593 TGCAAATGTTTGTTGATAGCTTACT 58.019 32.000 7.26 0.00 40.24 2.24
169 170 7.636259 TTGCAAATGTTTGTTGATAGCTTAC 57.364 32.000 0.00 0.00 40.24 2.34
170 171 8.087136 TGATTGCAAATGTTTGTTGATAGCTTA 58.913 29.630 1.71 0.00 40.24 3.09
171 172 6.930164 TGATTGCAAATGTTTGTTGATAGCTT 59.070 30.769 1.71 0.00 40.24 3.74
172 173 6.457355 TGATTGCAAATGTTTGTTGATAGCT 58.543 32.000 1.71 0.00 40.24 3.32
173 174 6.709145 TGATTGCAAATGTTTGTTGATAGC 57.291 33.333 1.71 0.00 40.24 2.97
174 175 8.980610 TCTTTGATTGCAAATGTTTGTTGATAG 58.019 29.630 1.71 0.00 42.66 2.08
175 176 8.883954 TCTTTGATTGCAAATGTTTGTTGATA 57.116 26.923 1.71 0.00 42.66 2.15
176 177 7.789273 TCTTTGATTGCAAATGTTTGTTGAT 57.211 28.000 1.71 0.28 42.66 2.57
177 178 7.254829 CCATCTTTGATTGCAAATGTTTGTTGA 60.255 33.333 1.71 0.00 42.66 3.18
178 179 6.853872 CCATCTTTGATTGCAAATGTTTGTTG 59.146 34.615 1.71 0.00 42.66 3.33
179 180 6.766944 TCCATCTTTGATTGCAAATGTTTGTT 59.233 30.769 1.71 0.00 42.66 2.83
180 181 6.289834 TCCATCTTTGATTGCAAATGTTTGT 58.710 32.000 1.71 0.00 42.66 2.83
181 182 6.788684 TCCATCTTTGATTGCAAATGTTTG 57.211 33.333 1.71 1.19 42.66 2.93
182 183 7.767198 CCTATCCATCTTTGATTGCAAATGTTT 59.233 33.333 1.71 0.00 42.66 2.83
183 184 7.270047 CCTATCCATCTTTGATTGCAAATGTT 58.730 34.615 1.71 0.00 42.66 2.71
184 185 6.183360 CCCTATCCATCTTTGATTGCAAATGT 60.183 38.462 1.71 0.00 42.66 2.71
185 186 6.041182 TCCCTATCCATCTTTGATTGCAAATG 59.959 38.462 1.71 0.92 42.66 2.32
186 187 6.041296 GTCCCTATCCATCTTTGATTGCAAAT 59.959 38.462 1.71 0.00 42.66 2.32
187 188 5.360714 GTCCCTATCCATCTTTGATTGCAAA 59.639 40.000 1.71 0.00 41.47 3.68
188 189 4.889409 GTCCCTATCCATCTTTGATTGCAA 59.111 41.667 0.00 0.00 0.00 4.08
189 190 4.464008 GTCCCTATCCATCTTTGATTGCA 58.536 43.478 0.00 0.00 0.00 4.08
190 191 3.823304 GGTCCCTATCCATCTTTGATTGC 59.177 47.826 0.00 0.00 0.00 3.56
191 192 5.316158 AGGTCCCTATCCATCTTTGATTG 57.684 43.478 0.00 0.00 0.00 2.67
192 193 7.527868 CGATAAGGTCCCTATCCATCTTTGATT 60.528 40.741 2.42 0.00 0.00 2.57
193 194 6.070538 CGATAAGGTCCCTATCCATCTTTGAT 60.071 42.308 2.42 0.00 0.00 2.57
194 195 5.246203 CGATAAGGTCCCTATCCATCTTTGA 59.754 44.000 2.42 0.00 0.00 2.69
195 196 5.482908 CGATAAGGTCCCTATCCATCTTTG 58.517 45.833 2.42 0.00 0.00 2.77
196 197 4.020128 GCGATAAGGTCCCTATCCATCTTT 60.020 45.833 2.42 0.00 0.00 2.52
197 198 3.515901 GCGATAAGGTCCCTATCCATCTT 59.484 47.826 2.42 0.00 0.00 2.40
198 199 3.100671 GCGATAAGGTCCCTATCCATCT 58.899 50.000 2.42 0.00 0.00 2.90
199 200 2.832129 TGCGATAAGGTCCCTATCCATC 59.168 50.000 2.42 0.00 0.00 3.51
200 201 2.902608 TGCGATAAGGTCCCTATCCAT 58.097 47.619 2.42 0.00 0.00 3.41
201 202 2.391926 TGCGATAAGGTCCCTATCCA 57.608 50.000 2.42 0.00 0.00 3.41
202 203 3.764237 TTTGCGATAAGGTCCCTATCC 57.236 47.619 2.42 0.00 0.00 2.59
223 224 4.132122 AGGGGTCCACATTCATCTTTTT 57.868 40.909 0.00 0.00 0.00 1.94
224 225 3.833559 AGGGGTCCACATTCATCTTTT 57.166 42.857 0.00 0.00 0.00 2.27
225 226 4.946160 TTAGGGGTCCACATTCATCTTT 57.054 40.909 0.00 0.00 0.00 2.52
226 227 5.472301 AATTAGGGGTCCACATTCATCTT 57.528 39.130 0.00 0.00 0.00 2.40
227 228 5.472301 AAATTAGGGGTCCACATTCATCT 57.528 39.130 0.00 0.00 0.00 2.90
228 229 7.839680 AATAAATTAGGGGTCCACATTCATC 57.160 36.000 0.00 0.00 0.00 2.92
229 230 9.722317 TTTAATAAATTAGGGGTCCACATTCAT 57.278 29.630 0.00 0.00 0.00 2.57
230 231 9.196139 CTTTAATAAATTAGGGGTCCACATTCA 57.804 33.333 0.00 0.00 0.00 2.57
231 232 9.416284 TCTTTAATAAATTAGGGGTCCACATTC 57.584 33.333 0.00 0.00 0.00 2.67
232 233 9.421399 CTCTTTAATAAATTAGGGGTCCACATT 57.579 33.333 0.00 0.00 0.00 2.71
252 253 9.201989 TGAGTATATTGCCTTCTTCTCTCTTTA 57.798 33.333 0.00 0.00 0.00 1.85
258 259 9.771534 ATAAACTGAGTATATTGCCTTCTTCTC 57.228 33.333 0.00 0.00 0.00 2.87
303 304 7.297936 TGAGTGACCAACTTTCTTATACTCA 57.702 36.000 0.00 0.00 40.07 3.41
311 312 6.966534 ATTTCATTGAGTGACCAACTTTCT 57.033 33.333 0.00 0.00 40.07 2.52
322 323 7.175641 AGAGTTCCACCTTAATTTCATTGAGTG 59.824 37.037 0.00 0.00 0.00 3.51
376 378 7.094634 GCATATATGATAGAGTTTGGGGTTGTG 60.095 40.741 17.10 0.00 0.00 3.33
430 432 1.553248 AGCGCCTCGGCCAATATATTA 59.447 47.619 2.29 0.00 37.98 0.98
432 434 0.324943 AAGCGCCTCGGCCAATATAT 59.675 50.000 2.29 0.00 37.98 0.86
437 439 4.467084 CCTAAGCGCCTCGGCCAA 62.467 66.667 2.29 0.00 37.98 4.52
446 448 3.272334 CCGTCATGGCCTAAGCGC 61.272 66.667 3.32 0.00 41.24 5.92
447 449 2.588877 CCCGTCATGGCCTAAGCG 60.589 66.667 3.32 3.72 41.24 4.68
448 450 2.203209 CCCCGTCATGGCCTAAGC 60.203 66.667 3.32 0.00 35.87 3.09
449 451 2.203209 GCCCCGTCATGGCCTAAG 60.203 66.667 3.32 0.00 43.33 2.18
455 457 2.044053 ACCATTGCCCCGTCATGG 60.044 61.111 0.00 0.00 38.31 3.66
456 458 3.067480 GCACCATTGCCCCGTCATG 62.067 63.158 0.00 0.00 43.66 3.07
457 459 2.755469 GCACCATTGCCCCGTCAT 60.755 61.111 0.00 0.00 43.66 3.06
466 468 0.599558 CCACCAAGACAGCACCATTG 59.400 55.000 0.00 0.00 0.00 2.82
469 471 1.148273 GTCCACCAAGACAGCACCA 59.852 57.895 0.00 0.00 36.73 4.17
470 472 1.600916 GGTCCACCAAGACAGCACC 60.601 63.158 0.00 0.00 38.59 5.01
471 473 0.179018 AAGGTCCACCAAGACAGCAC 60.179 55.000 0.00 0.00 38.59 4.40
472 474 0.550914 AAAGGTCCACCAAGACAGCA 59.449 50.000 0.00 0.00 38.59 4.41
474 476 3.485463 TGTAAAGGTCCACCAAGACAG 57.515 47.619 0.00 0.00 38.59 3.51
475 477 3.054287 TGTTGTAAAGGTCCACCAAGACA 60.054 43.478 0.00 0.00 38.59 3.41
476 478 3.547746 TGTTGTAAAGGTCCACCAAGAC 58.452 45.455 0.00 0.00 38.89 3.01
477 479 3.935818 TGTTGTAAAGGTCCACCAAGA 57.064 42.857 0.00 0.00 38.89 3.02
478 480 4.204012 TCTTGTTGTAAAGGTCCACCAAG 58.796 43.478 0.00 0.00 38.89 3.61
479 481 4.237976 TCTTGTTGTAAAGGTCCACCAA 57.762 40.909 0.00 0.00 38.89 3.67
480 482 3.935818 TCTTGTTGTAAAGGTCCACCA 57.064 42.857 0.00 0.00 38.89 4.17
485 487 6.635030 AACAAGGATCTTGTTGTAAAGGTC 57.365 37.500 20.81 0.00 40.70 3.85
494 496 3.493176 GGCTTTGCAACAAGGATCTTGTT 60.493 43.478 17.23 17.23 42.75 2.83
495 497 2.036346 GGCTTTGCAACAAGGATCTTGT 59.964 45.455 0.00 7.41 0.00 3.16
496 498 2.036217 TGGCTTTGCAACAAGGATCTTG 59.964 45.455 0.00 6.15 0.00 3.02
497 499 2.318908 TGGCTTTGCAACAAGGATCTT 58.681 42.857 0.00 0.00 0.00 2.40
499 501 2.231964 TCATGGCTTTGCAACAAGGATC 59.768 45.455 0.00 0.00 0.00 3.36
500 502 2.028748 GTCATGGCTTTGCAACAAGGAT 60.029 45.455 0.00 0.00 0.00 3.24
501 503 1.340889 GTCATGGCTTTGCAACAAGGA 59.659 47.619 0.00 0.00 0.00 3.36
502 504 1.342174 AGTCATGGCTTTGCAACAAGG 59.658 47.619 0.00 0.00 0.00 3.61
503 505 2.223876 ACAGTCATGGCTTTGCAACAAG 60.224 45.455 0.00 0.00 0.00 3.16
504 506 1.755959 ACAGTCATGGCTTTGCAACAA 59.244 42.857 0.00 0.00 0.00 2.83
505 507 1.401761 ACAGTCATGGCTTTGCAACA 58.598 45.000 0.00 0.00 0.00 3.33
506 508 3.243367 TGTTACAGTCATGGCTTTGCAAC 60.243 43.478 0.00 0.00 0.00 4.17
507 509 2.954989 TGTTACAGTCATGGCTTTGCAA 59.045 40.909 0.00 0.00 0.00 4.08
508 510 2.580962 TGTTACAGTCATGGCTTTGCA 58.419 42.857 0.00 0.00 0.00 4.08
509 511 3.568538 CTTGTTACAGTCATGGCTTTGC 58.431 45.455 0.00 0.00 0.00 3.68
510 512 3.254166 AGCTTGTTACAGTCATGGCTTTG 59.746 43.478 0.00 0.00 0.00 2.77
511 513 3.490348 AGCTTGTTACAGTCATGGCTTT 58.510 40.909 0.00 0.00 0.00 3.51
514 516 5.106157 ACAATTAGCTTGTTACAGTCATGGC 60.106 40.000 0.00 0.00 45.98 4.40
528 530 5.056480 GGAAACCTTTGCAACAATTAGCTT 58.944 37.500 0.00 0.00 0.00 3.74
532 534 6.261826 CCAAATGGAAACCTTTGCAACAATTA 59.738 34.615 0.00 0.00 41.79 1.40
533 535 5.067544 CCAAATGGAAACCTTTGCAACAATT 59.932 36.000 0.00 0.00 41.79 2.32
535 537 3.944015 CCAAATGGAAACCTTTGCAACAA 59.056 39.130 0.00 0.00 41.79 2.83
536 538 3.539604 CCAAATGGAAACCTTTGCAACA 58.460 40.909 0.00 0.00 41.79 3.33
537 539 2.290367 GCCAAATGGAAACCTTTGCAAC 59.710 45.455 0.00 0.00 41.79 4.17
540 542 2.145536 CAGCCAAATGGAAACCTTTGC 58.854 47.619 2.98 0.00 37.39 3.68
541 543 3.321682 TCTCAGCCAAATGGAAACCTTTG 59.678 43.478 2.98 0.00 37.39 2.77
542 544 3.321968 GTCTCAGCCAAATGGAAACCTTT 59.678 43.478 2.98 0.00 37.39 3.11
543 545 2.893489 GTCTCAGCCAAATGGAAACCTT 59.107 45.455 2.98 0.00 37.39 3.50
544 546 2.519013 GTCTCAGCCAAATGGAAACCT 58.481 47.619 2.98 0.00 37.39 3.50
545 547 1.200020 CGTCTCAGCCAAATGGAAACC 59.800 52.381 2.98 0.00 37.39 3.27
546 548 2.151202 TCGTCTCAGCCAAATGGAAAC 58.849 47.619 2.98 0.00 37.39 2.78
547 549 2.559698 TCGTCTCAGCCAAATGGAAA 57.440 45.000 2.98 0.00 37.39 3.13
548 550 2.787473 ATCGTCTCAGCCAAATGGAA 57.213 45.000 2.98 0.00 37.39 3.53
550 552 3.459232 TCTATCGTCTCAGCCAAATGG 57.541 47.619 0.00 0.00 38.53 3.16
551 553 3.672397 CGATCTATCGTCTCAGCCAAATG 59.328 47.826 4.20 0.00 44.74 2.32
552 554 3.906998 CGATCTATCGTCTCAGCCAAAT 58.093 45.455 4.20 0.00 44.74 2.32
553 555 3.355626 CGATCTATCGTCTCAGCCAAA 57.644 47.619 4.20 0.00 44.74 3.28
563 565 6.529051 CGAAACAGTCGTCCGATCTATCGT 62.529 50.000 11.12 0.00 45.36 3.73
564 566 4.139571 CGAAACAGTCGTCCGATCTATCG 61.140 52.174 5.38 5.38 45.85 2.92
565 567 3.289911 CGAAACAGTCGTCCGATCTATC 58.710 50.000 0.00 0.00 45.09 2.08
566 568 3.335786 CGAAACAGTCGTCCGATCTAT 57.664 47.619 0.00 0.00 45.09 1.98
567 569 2.819422 CGAAACAGTCGTCCGATCTA 57.181 50.000 0.00 0.00 45.09 1.98
577 579 1.359459 GGATGCCGTCCGAAACAGTC 61.359 60.000 0.00 0.00 37.23 3.51
592 594 1.811266 CCTCAGCAACCGTCGGATG 60.811 63.158 20.51 18.36 0.00 3.51
593 595 2.579201 CCTCAGCAACCGTCGGAT 59.421 61.111 20.51 2.18 0.00 4.18
594 596 4.373116 GCCTCAGCAACCGTCGGA 62.373 66.667 20.51 0.00 39.53 4.55
599 601 3.950794 TAAGCCGCCTCAGCAACCG 62.951 63.158 0.00 0.00 39.83 4.44
600 602 1.440145 GATAAGCCGCCTCAGCAACC 61.440 60.000 0.00 0.00 39.83 3.77
601 603 0.462759 AGATAAGCCGCCTCAGCAAC 60.463 55.000 0.00 0.00 39.83 4.17
602 604 0.253044 AAGATAAGCCGCCTCAGCAA 59.747 50.000 0.00 0.00 39.83 3.91
603 605 1.119684 TAAGATAAGCCGCCTCAGCA 58.880 50.000 0.00 0.00 39.83 4.41
604 606 2.342179 GATAAGATAAGCCGCCTCAGC 58.658 52.381 0.00 0.00 0.00 4.26
605 607 2.229062 TCGATAAGATAAGCCGCCTCAG 59.771 50.000 0.00 0.00 0.00 3.35
606 608 2.235891 TCGATAAGATAAGCCGCCTCA 58.764 47.619 0.00 0.00 0.00 3.86
607 609 3.512033 ATCGATAAGATAAGCCGCCTC 57.488 47.619 0.00 0.00 37.93 4.70
608 610 3.963428 AATCGATAAGATAAGCCGCCT 57.037 42.857 0.00 0.00 38.98 5.52
609 611 5.810587 TGATAAATCGATAAGATAAGCCGCC 59.189 40.000 0.00 0.00 38.98 6.13
610 612 6.887376 TGATAAATCGATAAGATAAGCCGC 57.113 37.500 0.00 0.00 38.98 6.53
611 613 7.096436 CGGATGATAAATCGATAAGATAAGCCG 60.096 40.741 11.56 11.56 38.98 5.52
613 615 7.707035 ACCGGATGATAAATCGATAAGATAAGC 59.293 37.037 9.46 0.00 38.98 3.09
614 616 9.025020 CACCGGATGATAAATCGATAAGATAAG 57.975 37.037 9.46 0.00 38.98 1.73
616 618 7.340999 TCCACCGGATGATAAATCGATAAGATA 59.659 37.037 9.46 0.00 38.98 1.98
617 619 6.154534 TCCACCGGATGATAAATCGATAAGAT 59.845 38.462 9.46 0.00 42.43 2.40
618 620 5.479027 TCCACCGGATGATAAATCGATAAGA 59.521 40.000 9.46 0.00 0.00 2.10
620 622 5.731957 TCCACCGGATGATAAATCGATAA 57.268 39.130 9.46 0.00 0.00 1.75
621 623 5.731957 TTCCACCGGATGATAAATCGATA 57.268 39.130 9.46 0.00 0.00 2.92
622 624 4.617253 TTCCACCGGATGATAAATCGAT 57.383 40.909 9.46 0.00 0.00 3.59
623 625 4.124238 GTTTCCACCGGATGATAAATCGA 58.876 43.478 9.46 0.00 0.00 3.59
624 626 3.059868 CGTTTCCACCGGATGATAAATCG 60.060 47.826 9.46 9.32 0.00 3.34
625 627 3.303791 GCGTTTCCACCGGATGATAAATC 60.304 47.826 9.46 1.37 0.00 2.17
628 630 1.066071 TGCGTTTCCACCGGATGATAA 60.066 47.619 9.46 0.00 0.00 1.75
629 631 0.537653 TGCGTTTCCACCGGATGATA 59.462 50.000 9.46 0.00 0.00 2.15
630 632 0.744414 CTGCGTTTCCACCGGATGAT 60.744 55.000 9.46 0.00 0.00 2.45
633 635 2.746277 GCTGCGTTTCCACCGGAT 60.746 61.111 9.46 0.00 0.00 4.18
634 636 3.545124 ATGCTGCGTTTCCACCGGA 62.545 57.895 9.46 0.00 0.00 5.14
636 638 1.442520 CAATGCTGCGTTTCCACCG 60.443 57.895 3.96 0.00 0.00 4.94
637 639 1.734117 GCAATGCTGCGTTTCCACC 60.734 57.895 3.96 0.00 39.20 4.61
638 640 3.846754 GCAATGCTGCGTTTCCAC 58.153 55.556 3.96 0.00 39.20 4.02
647 649 5.663456 ACTATTTTAATGTGGGCAATGCTG 58.337 37.500 4.82 0.00 0.00 4.41
648 650 5.937975 ACTATTTTAATGTGGGCAATGCT 57.062 34.783 4.82 0.00 0.00 3.79
649 651 6.983474 AAACTATTTTAATGTGGGCAATGC 57.017 33.333 0.00 0.00 0.00 3.56
651 653 7.759433 CGAGAAAACTATTTTAATGTGGGCAAT 59.241 33.333 0.00 0.00 31.94 3.56
652 654 7.040340 TCGAGAAAACTATTTTAATGTGGGCAA 60.040 33.333 0.00 0.00 31.94 4.52
653 655 6.431543 TCGAGAAAACTATTTTAATGTGGGCA 59.568 34.615 0.00 0.00 31.94 5.36
654 656 6.848451 TCGAGAAAACTATTTTAATGTGGGC 58.152 36.000 0.00 0.00 31.94 5.36
689 1410 9.405587 GTGCATACAAAATTTAAACTTAGCTGA 57.594 29.630 0.00 0.00 0.00 4.26
690 1411 8.647226 GGTGCATACAAAATTTAAACTTAGCTG 58.353 33.333 0.00 0.00 0.00 4.24
708 1436 4.631813 CAGACTTTACTTCCTGGTGCATAC 59.368 45.833 0.00 0.00 0.00 2.39
709 1437 4.286032 ACAGACTTTACTTCCTGGTGCATA 59.714 41.667 0.00 0.00 0.00 3.14
715 1457 2.299297 ACGGACAGACTTTACTTCCTGG 59.701 50.000 0.00 0.00 0.00 4.45
750 1492 1.731433 GCCCGTCGAGGTGTATGCTA 61.731 60.000 4.18 0.00 38.74 3.49
839 1586 2.411701 GCGGATGACGGACGATGA 59.588 61.111 0.00 0.00 44.51 2.92
865 1612 4.803426 GAGGTCTGTGCTCCCGCG 62.803 72.222 0.00 0.00 39.65 6.46
873 1620 1.197721 GATGTTTTGGCGAGGTCTGTG 59.802 52.381 0.00 0.00 0.00 3.66
1247 1994 2.808315 CCACCTCGGAGACATCGG 59.192 66.667 6.58 0.00 36.56 4.18
1326 2073 1.333636 CCTTGGAGACATCGAGGCCT 61.334 60.000 3.86 3.86 42.32 5.19
1342 2089 2.364448 GACCCTCTCCGCCTCCTT 60.364 66.667 0.00 0.00 0.00 3.36
1425 2172 3.295273 ACGAGCTGAGGCGACACA 61.295 61.111 0.00 0.00 44.37 3.72
1707 2454 1.221840 GAAGCCGGCCATCTTCTCA 59.778 57.895 26.15 0.00 36.63 3.27
1741 2488 8.826710 GTCGATCAACCAATTGTAATCTGATAA 58.173 33.333 4.43 0.00 37.11 1.75
1755 2502 0.032815 TCAGCACGTCGATCAACCAA 59.967 50.000 0.00 0.00 0.00 3.67
1767 2514 0.455633 GCTTGGATTTGCTCAGCACG 60.456 55.000 0.00 0.00 38.71 5.34
1863 2610 1.565390 CCCAGCCTTCCATGAGGACA 61.565 60.000 4.64 0.00 45.73 4.02
2235 2982 4.645762 TCCACTCTTTCTCATCTCATCG 57.354 45.455 0.00 0.00 0.00 3.84
2604 3351 4.080072 CCTCCCTCAATAAGAGCTTCCTTT 60.080 45.833 0.00 0.00 43.31 3.11
2743 3490 6.145535 CCACAATTTTGACTGAGCTTCTAAC 58.854 40.000 0.00 0.00 0.00 2.34
2842 3598 9.013229 ACATTGATGCTACTGAAACTAAATTGA 57.987 29.630 0.00 0.00 0.00 2.57
2888 3644 8.838365 AGCTTGTTCAATGCAAATGAATTTAAA 58.162 25.926 17.93 11.13 38.89 1.52
2895 3651 4.552355 CTGAGCTTGTTCAATGCAAATGA 58.448 39.130 0.00 0.00 0.00 2.57
2941 3697 4.912897 AGGACCCCTGGTTCTACC 57.087 61.111 0.00 0.00 40.28 3.18
2943 3699 0.032813 CGGTAGGACCCCTGGTTCTA 60.033 60.000 0.00 0.00 40.28 2.10
2944 3700 1.305887 CGGTAGGACCCCTGGTTCT 60.306 63.158 0.00 0.00 44.90 3.01
2945 3701 2.364780 CCGGTAGGACCCCTGGTTC 61.365 68.421 0.00 0.00 41.02 3.62
2946 3702 2.285144 CCGGTAGGACCCCTGGTT 60.285 66.667 0.00 0.00 41.02 3.67
2947 3703 3.278519 TCCGGTAGGACCCCTGGT 61.279 66.667 0.00 0.00 42.75 4.00
2956 3712 0.468214 TCCAGAGCAGATCCGGTAGG 60.468 60.000 0.00 0.00 39.46 3.18
2957 3713 0.958091 CTCCAGAGCAGATCCGGTAG 59.042 60.000 0.00 0.00 0.00 3.18
2958 3714 0.468214 CCTCCAGAGCAGATCCGGTA 60.468 60.000 0.00 0.00 0.00 4.02
2959 3715 1.760086 CCTCCAGAGCAGATCCGGT 60.760 63.158 0.00 0.00 0.00 5.28
2960 3716 1.333636 AACCTCCAGAGCAGATCCGG 61.334 60.000 0.00 0.00 0.00 5.14
2961 3717 0.179089 CAACCTCCAGAGCAGATCCG 60.179 60.000 0.00 0.00 0.00 4.18
2962 3718 0.908198 ACAACCTCCAGAGCAGATCC 59.092 55.000 0.00 0.00 0.00 3.36
2963 3719 2.102252 CCTACAACCTCCAGAGCAGATC 59.898 54.545 0.00 0.00 0.00 2.75
2964 3720 2.114616 CCTACAACCTCCAGAGCAGAT 58.885 52.381 0.00 0.00 0.00 2.90
2965 3721 1.561643 CCTACAACCTCCAGAGCAGA 58.438 55.000 0.00 0.00 0.00 4.26
2966 3722 0.539051 CCCTACAACCTCCAGAGCAG 59.461 60.000 0.00 0.00 0.00 4.24
2967 3723 0.909610 CCCCTACAACCTCCAGAGCA 60.910 60.000 0.00 0.00 0.00 4.26
2968 3724 0.617820 TCCCCTACAACCTCCAGAGC 60.618 60.000 0.00 0.00 0.00 4.09
2969 3725 1.834263 CTTCCCCTACAACCTCCAGAG 59.166 57.143 0.00 0.00 0.00 3.35
2970 3726 1.554822 CCTTCCCCTACAACCTCCAGA 60.555 57.143 0.00 0.00 0.00 3.86
2971 3727 0.912486 CCTTCCCCTACAACCTCCAG 59.088 60.000 0.00 0.00 0.00 3.86
2972 3728 0.494551 TCCTTCCCCTACAACCTCCA 59.505 55.000 0.00 0.00 0.00 3.86
2973 3729 1.490910 CATCCTTCCCCTACAACCTCC 59.509 57.143 0.00 0.00 0.00 4.30
2974 3730 1.490910 CCATCCTTCCCCTACAACCTC 59.509 57.143 0.00 0.00 0.00 3.85
2975 3731 1.082194 TCCATCCTTCCCCTACAACCT 59.918 52.381 0.00 0.00 0.00 3.50
2976 3732 1.490910 CTCCATCCTTCCCCTACAACC 59.509 57.143 0.00 0.00 0.00 3.77
2977 3733 2.092914 CACTCCATCCTTCCCCTACAAC 60.093 54.545 0.00 0.00 0.00 3.32
2978 3734 2.196595 CACTCCATCCTTCCCCTACAA 58.803 52.381 0.00 0.00 0.00 2.41
2979 3735 1.625228 CCACTCCATCCTTCCCCTACA 60.625 57.143 0.00 0.00 0.00 2.74
2980 3736 1.132500 CCACTCCATCCTTCCCCTAC 58.868 60.000 0.00 0.00 0.00 3.18
2981 3737 0.030092 CCCACTCCATCCTTCCCCTA 60.030 60.000 0.00 0.00 0.00 3.53
2982 3738 1.308216 CCCACTCCATCCTTCCCCT 60.308 63.158 0.00 0.00 0.00 4.79
2983 3739 1.307866 TCCCACTCCATCCTTCCCC 60.308 63.158 0.00 0.00 0.00 4.81
2984 3740 1.915983 GTCCCACTCCATCCTTCCC 59.084 63.158 0.00 0.00 0.00 3.97
2985 3741 1.522569 CGTCCCACTCCATCCTTCC 59.477 63.158 0.00 0.00 0.00 3.46
2986 3742 1.522569 CCGTCCCACTCCATCCTTC 59.477 63.158 0.00 0.00 0.00 3.46
2987 3743 1.995626 CCCGTCCCACTCCATCCTT 60.996 63.158 0.00 0.00 0.00 3.36
2988 3744 2.365635 CCCGTCCCACTCCATCCT 60.366 66.667 0.00 0.00 0.00 3.24
2989 3745 3.480133 CCCCGTCCCACTCCATCC 61.480 72.222 0.00 0.00 0.00 3.51
2990 3746 4.176752 GCCCCGTCCCACTCCATC 62.177 72.222 0.00 0.00 0.00 3.51
2994 3750 4.530857 CATCGCCCCGTCCCACTC 62.531 72.222 0.00 0.00 0.00 3.51
2996 3752 3.400599 AATCATCGCCCCGTCCCAC 62.401 63.158 0.00 0.00 0.00 4.61
2997 3753 3.087253 AATCATCGCCCCGTCCCA 61.087 61.111 0.00 0.00 0.00 4.37
2998 3754 2.591715 CAATCATCGCCCCGTCCC 60.592 66.667 0.00 0.00 0.00 4.46
2999 3755 2.591715 CCAATCATCGCCCCGTCC 60.592 66.667 0.00 0.00 0.00 4.79
3000 3756 2.591715 CCCAATCATCGCCCCGTC 60.592 66.667 0.00 0.00 0.00 4.79
3001 3757 4.875713 GCCCAATCATCGCCCCGT 62.876 66.667 0.00 0.00 0.00 5.28
3002 3758 4.569180 AGCCCAATCATCGCCCCG 62.569 66.667 0.00 0.00 0.00 5.73
3003 3759 2.595754 GAGCCCAATCATCGCCCC 60.596 66.667 0.00 0.00 0.00 5.80
3004 3760 2.974698 CGAGCCCAATCATCGCCC 60.975 66.667 0.00 0.00 0.00 6.13
3007 3763 3.341043 CGGCGAGCCCAATCATCG 61.341 66.667 0.00 0.00 39.40 3.84
3008 3764 2.974698 CCGGCGAGCCCAATCATC 60.975 66.667 9.30 0.00 0.00 2.92
3039 3795 4.933064 CATCTCCCTCCGACGCGC 62.933 72.222 5.73 0.00 0.00 6.86
3040 3796 4.271816 CCATCTCCCTCCGACGCG 62.272 72.222 3.53 3.53 0.00 6.01
3041 3797 4.593864 GCCATCTCCCTCCGACGC 62.594 72.222 0.00 0.00 0.00 5.19
3042 3798 4.271816 CGCCATCTCCCTCCGACG 62.272 72.222 0.00 0.00 0.00 5.12
3043 3799 3.917760 CCGCCATCTCCCTCCGAC 61.918 72.222 0.00 0.00 0.00 4.79
3059 3815 4.603946 CTAACCCTAGCCGCCGCC 62.604 72.222 0.00 0.00 34.57 6.13
3060 3816 3.501458 CTCTAACCCTAGCCGCCGC 62.501 68.421 0.00 0.00 0.00 6.53
3061 3817 2.728817 CTCTAACCCTAGCCGCCG 59.271 66.667 0.00 0.00 0.00 6.46
3062 3818 3.139565 CCTCTAACCCTAGCCGCC 58.860 66.667 0.00 0.00 0.00 6.13
3063 3819 2.422165 GCCTCTAACCCTAGCCGC 59.578 66.667 0.00 0.00 0.00 6.53
3064 3820 2.728817 CGCCTCTAACCCTAGCCG 59.271 66.667 0.00 0.00 0.00 5.52
3065 3821 3.139565 CCGCCTCTAACCCTAGCC 58.860 66.667 0.00 0.00 0.00 3.93
3066 3822 0.826672 TAGCCGCCTCTAACCCTAGC 60.827 60.000 0.00 0.00 0.00 3.42
3067 3823 1.249407 CTAGCCGCCTCTAACCCTAG 58.751 60.000 0.00 0.00 0.00 3.02
3068 3824 0.178970 CCTAGCCGCCTCTAACCCTA 60.179 60.000 0.00 0.00 0.00 3.53
3069 3825 1.457831 CCTAGCCGCCTCTAACCCT 60.458 63.158 0.00 0.00 0.00 4.34
3070 3826 2.508751 CCCTAGCCGCCTCTAACCC 61.509 68.421 0.00 0.00 0.00 4.11
3071 3827 1.335882 AACCCTAGCCGCCTCTAACC 61.336 60.000 0.00 0.00 0.00 2.85
3072 3828 0.104487 GAACCCTAGCCGCCTCTAAC 59.896 60.000 0.00 0.00 0.00 2.34
3073 3829 1.047034 GGAACCCTAGCCGCCTCTAA 61.047 60.000 0.00 0.00 0.00 2.10
3074 3830 1.457079 GGAACCCTAGCCGCCTCTA 60.457 63.158 0.00 0.00 0.00 2.43
3075 3831 2.764547 GGAACCCTAGCCGCCTCT 60.765 66.667 0.00 0.00 0.00 3.69
3076 3832 4.222847 CGGAACCCTAGCCGCCTC 62.223 72.222 0.00 0.00 41.17 4.70
3080 3836 4.222847 GAGCCGGAACCCTAGCCG 62.223 72.222 5.05 0.00 46.80 5.52
3081 3837 3.862991 GGAGCCGGAACCCTAGCC 61.863 72.222 5.05 0.00 0.00 3.93
3082 3838 2.764547 AGGAGCCGGAACCCTAGC 60.765 66.667 5.05 0.00 0.00 3.42
3083 3839 1.075896 AGAGGAGCCGGAACCCTAG 60.076 63.158 5.05 0.00 0.00 3.02
3084 3840 1.381327 CAGAGGAGCCGGAACCCTA 60.381 63.158 5.05 0.00 0.00 3.53
3085 3841 2.685380 CAGAGGAGCCGGAACCCT 60.685 66.667 5.05 7.67 0.00 4.34
3086 3842 3.787001 CCAGAGGAGCCGGAACCC 61.787 72.222 5.05 1.57 0.00 4.11
3087 3843 3.787001 CCCAGAGGAGCCGGAACC 61.787 72.222 5.05 7.56 33.47 3.62
3088 3844 2.683933 TCCCAGAGGAGCCGGAAC 60.684 66.667 5.05 0.00 37.19 3.62
3089 3845 2.683933 GTCCCAGAGGAGCCGGAA 60.684 66.667 5.05 0.00 45.21 4.30
3101 3857 2.006415 CCCTATTGCCTGGGTCCCA 61.006 63.158 11.11 11.11 38.65 4.37
3102 3858 1.068352 ATCCCTATTGCCTGGGTCCC 61.068 60.000 0.00 0.00 43.74 4.46
3103 3859 1.742308 TATCCCTATTGCCTGGGTCC 58.258 55.000 0.00 0.00 43.74 4.46
3104 3860 5.514500 TTATTATCCCTATTGCCTGGGTC 57.486 43.478 0.00 0.00 43.74 4.46
3105 3861 7.787517 ATATTATTATCCCTATTGCCTGGGT 57.212 36.000 0.00 0.00 43.74 4.51
3106 3862 8.506083 AGAATATTATTATCCCTATTGCCTGGG 58.494 37.037 0.00 0.00 44.66 4.45
3107 3863 9.927081 AAGAATATTATTATCCCTATTGCCTGG 57.073 33.333 0.00 0.00 0.00 4.45
3134 3890 9.914131 GTAAGACTCTTTTTGGAATTAAGCAAT 57.086 29.630 0.00 0.00 0.00 3.56
3135 3891 8.908903 TGTAAGACTCTTTTTGGAATTAAGCAA 58.091 29.630 0.00 0.00 0.00 3.91
3136 3892 8.458573 TGTAAGACTCTTTTTGGAATTAAGCA 57.541 30.769 0.00 0.00 0.00 3.91
3137 3893 9.181805 GTTGTAAGACTCTTTTTGGAATTAAGC 57.818 33.333 0.00 0.00 0.00 3.09
3138 3894 9.678941 GGTTGTAAGACTCTTTTTGGAATTAAG 57.321 33.333 0.00 0.00 0.00 1.85
3139 3895 9.416284 AGGTTGTAAGACTCTTTTTGGAATTAA 57.584 29.630 0.00 0.00 0.00 1.40
3140 3896 8.990163 AGGTTGTAAGACTCTTTTTGGAATTA 57.010 30.769 0.00 0.00 0.00 1.40
3141 3897 7.898014 AGGTTGTAAGACTCTTTTTGGAATT 57.102 32.000 0.00 0.00 0.00 2.17
3193 3949 9.668497 GTCCACAAGTTATCTTAGGTTAATTCT 57.332 33.333 0.00 0.00 32.99 2.40
3194 3950 9.668497 AGTCCACAAGTTATCTTAGGTTAATTC 57.332 33.333 0.00 0.00 32.99 2.17
3198 3954 9.537852 TCTTAGTCCACAAGTTATCTTAGGTTA 57.462 33.333 4.86 0.00 32.99 2.85
3199 3955 8.431910 TCTTAGTCCACAAGTTATCTTAGGTT 57.568 34.615 4.86 0.25 32.99 3.50
3200 3956 8.611051 ATCTTAGTCCACAAGTTATCTTAGGT 57.389 34.615 4.86 0.00 32.99 3.08
3201 3957 9.319143 CAATCTTAGTCCACAAGTTATCTTAGG 57.681 37.037 0.00 0.00 32.07 2.69
3202 3958 8.821894 GCAATCTTAGTCCACAAGTTATCTTAG 58.178 37.037 0.00 0.00 32.07 2.18
3203 3959 7.769044 GGCAATCTTAGTCCACAAGTTATCTTA 59.231 37.037 0.00 0.00 32.07 2.10
3204 3960 6.599638 GGCAATCTTAGTCCACAAGTTATCTT 59.400 38.462 0.00 0.00 0.00 2.40
3205 3961 6.116126 GGCAATCTTAGTCCACAAGTTATCT 58.884 40.000 0.00 0.00 0.00 1.98
3206 3962 5.297029 GGGCAATCTTAGTCCACAAGTTATC 59.703 44.000 0.00 0.00 0.00 1.75
3207 3963 5.193679 GGGCAATCTTAGTCCACAAGTTAT 58.806 41.667 0.00 0.00 0.00 1.89
3208 3964 4.585879 GGGCAATCTTAGTCCACAAGTTA 58.414 43.478 0.00 0.00 0.00 2.24
3209 3965 3.421844 GGGCAATCTTAGTCCACAAGTT 58.578 45.455 0.00 0.00 0.00 2.66
3210 3966 2.615493 CGGGCAATCTTAGTCCACAAGT 60.615 50.000 0.00 0.00 0.00 3.16
3211 3967 2.009774 CGGGCAATCTTAGTCCACAAG 58.990 52.381 0.00 0.00 0.00 3.16
3212 3968 1.339631 CCGGGCAATCTTAGTCCACAA 60.340 52.381 0.00 0.00 0.00 3.33
3213 3969 0.251916 CCGGGCAATCTTAGTCCACA 59.748 55.000 0.00 0.00 0.00 4.17
3214 3970 0.252197 ACCGGGCAATCTTAGTCCAC 59.748 55.000 6.32 0.00 0.00 4.02
3215 3971 0.251916 CACCGGGCAATCTTAGTCCA 59.748 55.000 6.32 0.00 0.00 4.02
3216 3972 0.463833 CCACCGGGCAATCTTAGTCC 60.464 60.000 6.32 0.00 0.00 3.85
3217 3973 0.463833 CCCACCGGGCAATCTTAGTC 60.464 60.000 6.32 0.00 35.35 2.59
3218 3974 1.607612 CCCACCGGGCAATCTTAGT 59.392 57.895 6.32 0.00 35.35 2.24
3219 3975 4.559502 CCCACCGGGCAATCTTAG 57.440 61.111 6.32 0.00 35.35 2.18
3229 3985 1.153229 GTTTAGCTAGGCCCACCGG 60.153 63.158 0.00 0.00 42.76 5.28
3230 3986 1.153229 GGTTTAGCTAGGCCCACCG 60.153 63.158 0.00 0.00 42.76 4.94
3231 3987 1.153229 CGGTTTAGCTAGGCCCACC 60.153 63.158 0.00 4.71 0.00 4.61
3232 3988 1.153229 CCGGTTTAGCTAGGCCCAC 60.153 63.158 0.00 0.00 0.00 4.61
3233 3989 3.038945 GCCGGTTTAGCTAGGCCCA 62.039 63.158 10.00 0.00 43.54 5.36
3234 3990 2.203167 GCCGGTTTAGCTAGGCCC 60.203 66.667 10.00 3.43 43.54 5.80
3237 3993 2.158871 TGTTATGGCCGGTTTAGCTAGG 60.159 50.000 1.90 0.00 0.00 3.02
3238 3994 3.131396 CTGTTATGGCCGGTTTAGCTAG 58.869 50.000 1.90 0.00 0.00 3.42
3239 3995 2.767394 TCTGTTATGGCCGGTTTAGCTA 59.233 45.455 1.90 0.00 0.00 3.32
3240 3996 1.557832 TCTGTTATGGCCGGTTTAGCT 59.442 47.619 1.90 0.00 0.00 3.32
3241 3997 2.032680 TCTGTTATGGCCGGTTTAGC 57.967 50.000 1.90 0.00 0.00 3.09
3242 3998 3.804036 TCATCTGTTATGGCCGGTTTAG 58.196 45.455 1.90 0.00 0.00 1.85
3243 3999 3.452990 TCTCATCTGTTATGGCCGGTTTA 59.547 43.478 1.90 0.00 0.00 2.01
3244 4000 2.238646 TCTCATCTGTTATGGCCGGTTT 59.761 45.455 1.90 0.00 0.00 3.27
3245 4001 1.837439 TCTCATCTGTTATGGCCGGTT 59.163 47.619 1.90 0.00 0.00 4.44
3246 4002 1.496060 TCTCATCTGTTATGGCCGGT 58.504 50.000 1.90 0.00 0.00 5.28
3247 4003 2.847327 ATCTCATCTGTTATGGCCGG 57.153 50.000 0.00 0.00 0.00 6.13
3248 4004 3.997021 GGTTATCTCATCTGTTATGGCCG 59.003 47.826 0.00 0.00 0.00 6.13
3249 4005 4.973168 TGGTTATCTCATCTGTTATGGCC 58.027 43.478 0.00 0.00 0.00 5.36
3250 4006 6.942532 TTTGGTTATCTCATCTGTTATGGC 57.057 37.500 0.00 0.00 0.00 4.40
3251 4007 7.941238 AGGATTTGGTTATCTCATCTGTTATGG 59.059 37.037 0.00 0.00 0.00 2.74
3252 4008 8.915057 AGGATTTGGTTATCTCATCTGTTATG 57.085 34.615 0.00 0.00 0.00 1.90
3253 4009 9.927081 AAAGGATTTGGTTATCTCATCTGTTAT 57.073 29.630 0.00 0.00 36.60 1.89
3255 4011 9.178758 GTAAAGGATTTGGTTATCTCATCTGTT 57.821 33.333 0.00 0.00 39.63 3.16
3256 4012 8.328758 TGTAAAGGATTTGGTTATCTCATCTGT 58.671 33.333 0.00 0.00 39.63 3.41
3257 4013 8.737168 TGTAAAGGATTTGGTTATCTCATCTG 57.263 34.615 0.00 0.00 39.63 2.90
3258 4014 9.753674 TTTGTAAAGGATTTGGTTATCTCATCT 57.246 29.630 0.00 0.00 39.63 2.90
3313 4069 9.974750 GTTGTAGTTGCTAATGAGAAGAATAAC 57.025 33.333 0.00 0.00 0.00 1.89
3372 4128 2.365293 GAGCAATCCCAACCTGTTGTTT 59.635 45.455 9.03 0.00 38.85 2.83
3570 4326 5.968848 GTGTACGTGAAGCTGAAATGAAAAA 59.031 36.000 0.00 0.00 0.00 1.94
3588 4344 3.562557 ACCAAGCAAAAGTAAGGTGTACG 59.437 43.478 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.