Multiple sequence alignment - TraesCS5A01G299500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G299500 chr5A 100.000 2531 0 0 1 2531 509042606 509045136 0.000000e+00 4674
1 TraesCS5A01G299500 chr5A 87.921 712 79 4 2 713 556389182 556389886 0.000000e+00 832
2 TraesCS5A01G299500 chr5A 87.781 712 80 4 2 713 556240834 556241538 0.000000e+00 826
3 TraesCS5A01G299500 chr5A 87.798 713 76 8 2 713 556268657 556269359 0.000000e+00 824
4 TraesCS5A01G299500 chr5A 86.975 714 81 9 2 713 556399668 556400371 0.000000e+00 793
5 TraesCS5A01G299500 chr5A 94.805 77 3 1 1775 1851 509044336 509044411 4.420000e-23 119
6 TraesCS5A01G299500 chr5A 94.805 77 3 1 1731 1806 509044380 509044456 4.420000e-23 119
7 TraesCS5A01G299500 chr5D 88.115 1077 91 20 739 1790 405335028 405333964 0.000000e+00 1245
8 TraesCS5A01G299500 chr5D 88.337 463 41 11 1782 2239 405334018 405333564 6.160000e-151 544
9 TraesCS5A01G299500 chr5D 95.950 321 12 1 1061 1380 331842146 331841826 1.040000e-143 520
10 TraesCS5A01G299500 chr5B 87.324 994 77 27 724 1682 486283601 486282622 0.000000e+00 1092
11 TraesCS5A01G299500 chr5B 95.611 319 14 0 1061 1379 535715415 535715097 1.740000e-141 512
12 TraesCS5A01G299500 chr5B 87.940 398 33 7 1876 2259 486282578 486282182 2.970000e-124 455
13 TraesCS5A01G299500 chr3B 86.197 710 89 6 2 709 790786750 790787452 0.000000e+00 760
14 TraesCS5A01G299500 chr3B 84.396 737 77 19 2 713 390908366 390909089 0.000000e+00 689
15 TraesCS5A01G299500 chr7A 92.126 381 18 2 298 670 688944532 688944156 6.200000e-146 527
16 TraesCS5A01G299500 chr7A 97.004 267 6 2 2266 2531 9210717 9210452 4.970000e-122 448
17 TraesCS5A01G299500 chr1A 96.486 313 11 0 1065 1377 541460785 541460473 3.730000e-143 518
18 TraesCS5A01G299500 chr1A 96.190 315 12 0 1065 1379 543928365 543928679 1.340000e-142 516
19 TraesCS5A01G299500 chr1A 96.166 313 12 0 1065 1377 541343823 541344135 1.740000e-141 512
20 TraesCS5A01G299500 chr1A 98.077 260 4 1 2272 2531 358543553 358543295 3.840000e-123 451
21 TraesCS5A01G299500 chr1A 95.290 276 11 2 2257 2531 13709822 13709548 1.080000e-118 436
22 TraesCS5A01G299500 chr1A 96.923 260 8 0 2272 2531 142959512 142959253 1.080000e-118 436
23 TraesCS5A01G299500 chr4A 95.356 323 15 0 1056 1378 66148194 66147872 4.830000e-142 514
24 TraesCS5A01G299500 chr4A 97.692 260 5 1 2272 2531 13331168 13331426 1.790000e-121 446
25 TraesCS5A01G299500 chr1D 95.370 324 13 2 1065 1386 445366814 445366491 4.830000e-142 514
26 TraesCS5A01G299500 chr1D 87.766 376 42 4 2 376 413199319 413199691 1.080000e-118 436
27 TraesCS5A01G299500 chr3A 97.692 260 6 0 2272 2531 394385384 394385125 4.970000e-122 448
28 TraesCS5A01G299500 chr3A 97.692 260 5 1 2272 2531 58275074 58274816 1.790000e-121 446
29 TraesCS5A01G299500 chr6A 96.981 265 6 2 2267 2531 517573625 517573363 6.420000e-121 444
30 TraesCS5A01G299500 chr6A 96.269 268 8 2 2265 2531 97632378 97632112 2.990000e-119 438


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G299500 chr5A 509042606 509045136 2530 False 1637.333333 4674 96.536667 1 2531 3 chr5A.!!$F5 2530
1 TraesCS5A01G299500 chr5A 556389182 556389886 704 False 832.000000 832 87.921000 2 713 1 chr5A.!!$F3 711
2 TraesCS5A01G299500 chr5A 556240834 556241538 704 False 826.000000 826 87.781000 2 713 1 chr5A.!!$F1 711
3 TraesCS5A01G299500 chr5A 556268657 556269359 702 False 824.000000 824 87.798000 2 713 1 chr5A.!!$F2 711
4 TraesCS5A01G299500 chr5A 556399668 556400371 703 False 793.000000 793 86.975000 2 713 1 chr5A.!!$F4 711
5 TraesCS5A01G299500 chr5D 405333564 405335028 1464 True 894.500000 1245 88.226000 739 2239 2 chr5D.!!$R2 1500
6 TraesCS5A01G299500 chr5B 486282182 486283601 1419 True 773.500000 1092 87.632000 724 2259 2 chr5B.!!$R2 1535
7 TraesCS5A01G299500 chr3B 790786750 790787452 702 False 760.000000 760 86.197000 2 709 1 chr3B.!!$F2 707
8 TraesCS5A01G299500 chr3B 390908366 390909089 723 False 689.000000 689 84.396000 2 713 1 chr3B.!!$F1 711

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
822 856 0.252558 CCTACCCCACACTACACCCT 60.253 60.0 0.0 0.0 0.0 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1823 1886 0.034896 TCACTTCCTCGGAGGCAAAC 59.965 55.0 19.48 0.0 34.61 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 1.685491 GGTAGAGGGATCGGTGACACT 60.685 57.143 5.39 0.00 0.00 3.55
100 101 1.009829 CACTGGAGCACTTAATCGCC 58.990 55.000 0.00 0.00 0.00 5.54
156 157 4.142381 GCAAATAGCACTAAAGGACCCTTG 60.142 45.833 1.50 0.00 44.79 3.61
161 162 3.117663 AGCACTAAAGGACCCTTGAAACA 60.118 43.478 1.50 0.00 36.26 2.83
175 176 1.262950 TGAAACAATTCACGAGCCACG 59.737 47.619 0.00 0.00 40.59 4.94
210 211 7.335422 CACTCAAATTTTAGCTACTCCATCAGT 59.665 37.037 0.00 0.00 39.41 3.41
214 215 2.730934 TAGCTACTCCATCAGTCGGT 57.269 50.000 0.00 0.00 36.43 4.69
227 228 2.693591 TCAGTCGGTGGGATACATCTTC 59.306 50.000 0.00 0.00 39.74 2.87
228 229 2.695666 CAGTCGGTGGGATACATCTTCT 59.304 50.000 0.00 0.00 39.74 2.85
229 230 3.889538 CAGTCGGTGGGATACATCTTCTA 59.110 47.826 0.00 0.00 39.74 2.10
230 231 4.022762 CAGTCGGTGGGATACATCTTCTAG 60.023 50.000 0.00 0.00 39.74 2.43
231 232 2.891580 TCGGTGGGATACATCTTCTAGC 59.108 50.000 0.00 0.00 39.74 3.42
232 233 2.028930 CGGTGGGATACATCTTCTAGCC 60.029 54.545 0.00 0.00 39.74 3.93
314 339 9.838339 AGTTCCATTATATACCTCTTGACAAAG 57.162 33.333 0.00 0.00 34.45 2.77
316 341 7.801104 TCCATTATATACCTCTTGACAAAGCA 58.199 34.615 0.00 0.00 33.06 3.91
369 394 4.871513 CTCATGTAGAGCCTTTATGCGTA 58.128 43.478 0.00 0.00 37.59 4.42
370 395 5.270893 TCATGTAGAGCCTTTATGCGTAA 57.729 39.130 0.00 0.00 36.02 3.18
378 403 2.477863 GCCTTTATGCGTAAGTGCCAAG 60.478 50.000 9.28 0.00 41.68 3.61
394 419 1.688197 CCAAGTTGCCCAAAGTGTCAT 59.312 47.619 0.00 0.00 0.00 3.06
395 420 2.288395 CCAAGTTGCCCAAAGTGTCATC 60.288 50.000 0.00 0.00 0.00 2.92
414 439 6.070824 TGTCATCAGTAGCTTGGTGAAATCTA 60.071 38.462 2.90 0.00 39.73 1.98
451 476 7.667219 GGCCTCCATGAGAGAAAATATAAATCA 59.333 37.037 11.48 0.00 46.50 2.57
470 495 7.406031 AAATCACTTCGTATCAGGTTCTCTA 57.594 36.000 0.00 0.00 0.00 2.43
473 498 7.406031 TCACTTCGTATCAGGTTCTCTATTT 57.594 36.000 0.00 0.00 0.00 1.40
475 500 7.974501 TCACTTCGTATCAGGTTCTCTATTTTC 59.025 37.037 0.00 0.00 0.00 2.29
486 511 9.401058 CAGGTTCTCTATTTTCCATCATTACTT 57.599 33.333 0.00 0.00 0.00 2.24
487 512 9.620259 AGGTTCTCTATTTTCCATCATTACTTC 57.380 33.333 0.00 0.00 0.00 3.01
488 513 8.841300 GGTTCTCTATTTTCCATCATTACTTCC 58.159 37.037 0.00 0.00 0.00 3.46
489 514 9.396022 GTTCTCTATTTTCCATCATTACTTCCA 57.604 33.333 0.00 0.00 0.00 3.53
512 537 2.289694 CCACCAAGTCTTCGTCCTCAAT 60.290 50.000 0.00 0.00 0.00 2.57
522 549 0.953471 CGTCCTCAATCGCCCAAACA 60.953 55.000 0.00 0.00 0.00 2.83
526 553 1.339610 CCTCAATCGCCCAAACACAAA 59.660 47.619 0.00 0.00 0.00 2.83
548 575 4.005650 AGTGCCATGTTACACTCAATCAG 58.994 43.478 7.29 0.00 43.55 2.90
576 603 1.077716 CCAAGAATCCGGTGTCCCC 60.078 63.158 0.00 0.00 0.00 4.81
607 634 0.952497 CACTGCTTGAGTCGCCATGT 60.952 55.000 0.00 0.00 29.75 3.21
611 638 1.680735 TGCTTGAGTCGCCATGTTTTT 59.319 42.857 0.00 0.00 0.00 1.94
663 690 2.906458 CCGAGCAAGCCTCCAGAT 59.094 61.111 0.00 0.00 37.27 2.90
709 736 6.372981 GGACATCAATTTTCCACATTTTTGC 58.627 36.000 0.00 0.00 0.00 3.68
713 740 4.820716 TCAATTTTCCACATTTTTGCCCAG 59.179 37.500 0.00 0.00 0.00 4.45
714 741 2.252976 TTTCCACATTTTTGCCCAGC 57.747 45.000 0.00 0.00 0.00 4.85
715 742 0.396060 TTCCACATTTTTGCCCAGCC 59.604 50.000 0.00 0.00 0.00 4.85
716 743 1.003476 CCACATTTTTGCCCAGCCC 60.003 57.895 0.00 0.00 0.00 5.19
717 744 1.003476 CACATTTTTGCCCAGCCCC 60.003 57.895 0.00 0.00 0.00 5.80
718 745 1.152052 ACATTTTTGCCCAGCCCCT 60.152 52.632 0.00 0.00 0.00 4.79
719 746 0.767833 ACATTTTTGCCCAGCCCCTT 60.768 50.000 0.00 0.00 0.00 3.95
720 747 0.321830 CATTTTTGCCCAGCCCCTTG 60.322 55.000 0.00 0.00 0.00 3.61
721 748 2.128290 ATTTTTGCCCAGCCCCTTGC 62.128 55.000 0.00 0.00 41.71 4.01
734 761 4.047059 CTTGCCGCCCTTGCACAG 62.047 66.667 0.00 0.00 38.72 3.66
735 762 4.892965 TTGCCGCCCTTGCACAGT 62.893 61.111 0.00 0.00 38.72 3.55
743 770 2.519063 CTTGCACAGTGGCCACCA 60.519 61.111 32.29 19.82 0.00 4.17
796 830 2.696759 CCCCGGCATCGAAAACCAC 61.697 63.158 0.00 0.00 39.00 4.16
805 839 2.668550 GAAAACCACTCCGCGCCT 60.669 61.111 0.00 0.00 0.00 5.52
822 856 0.252558 CCTACCCCACACTACACCCT 60.253 60.000 0.00 0.00 0.00 4.34
834 868 4.082523 CACCCTCCGCCACGTCAT 62.083 66.667 0.00 0.00 0.00 3.06
842 876 2.104331 GCCACGTCATCGATCCGT 59.896 61.111 12.53 12.53 40.62 4.69
846 880 2.413351 CGTCATCGATCCGTGGCT 59.587 61.111 0.00 0.00 39.71 4.75
854 889 2.041265 ATCCGTGGCTCCCTCCTT 59.959 61.111 0.00 0.00 0.00 3.36
863 898 1.614824 CTCCCTCCTTGCCCACTCT 60.615 63.158 0.00 0.00 0.00 3.24
872 907 2.184020 TTGCCCACTCTCCACCATCG 62.184 60.000 0.00 0.00 0.00 3.84
878 913 1.006805 CTCTCCACCATCGATCCGC 60.007 63.158 0.00 0.00 0.00 5.54
969 1005 1.770749 TTAACCCACCTCACCCCACG 61.771 60.000 0.00 0.00 0.00 4.94
987 1023 2.300967 GCTCCACCACCATCCTCCA 61.301 63.158 0.00 0.00 0.00 3.86
1016 1052 1.455383 CCACCACTCCCAACACAAGC 61.455 60.000 0.00 0.00 0.00 4.01
1036 1072 0.613260 CAATCCCACCGGAGAGACAA 59.387 55.000 9.46 0.00 43.12 3.18
1037 1073 0.613777 AATCCCACCGGAGAGACAAC 59.386 55.000 9.46 0.00 43.12 3.32
1039 1075 1.185618 TCCCACCGGAGAGACAACAG 61.186 60.000 9.46 0.00 32.86 3.16
1040 1076 1.185618 CCCACCGGAGAGACAACAGA 61.186 60.000 9.46 0.00 0.00 3.41
1041 1077 0.244994 CCACCGGAGAGACAACAGAG 59.755 60.000 9.46 0.00 0.00 3.35
1043 1079 1.613925 CACCGGAGAGACAACAGAGAA 59.386 52.381 9.46 0.00 0.00 2.87
1044 1080 1.889829 ACCGGAGAGACAACAGAGAAG 59.110 52.381 9.46 0.00 0.00 2.85
1045 1081 1.403514 CCGGAGAGACAACAGAGAAGC 60.404 57.143 0.00 0.00 0.00 3.86
1047 1083 1.542030 GGAGAGACAACAGAGAAGCGA 59.458 52.381 0.00 0.00 0.00 4.93
1048 1084 2.029828 GGAGAGACAACAGAGAAGCGAA 60.030 50.000 0.00 0.00 0.00 4.70
1049 1085 3.367910 GGAGAGACAACAGAGAAGCGAAT 60.368 47.826 0.00 0.00 0.00 3.34
1050 1086 3.843999 AGAGACAACAGAGAAGCGAATC 58.156 45.455 0.00 0.00 0.00 2.52
1051 1087 3.256879 AGAGACAACAGAGAAGCGAATCA 59.743 43.478 0.00 0.00 0.00 2.57
1401 1437 2.125147 CGCCGGGATCTTCAAGCA 60.125 61.111 2.18 0.00 0.00 3.91
1407 1443 1.541147 CGGGATCTTCAAGCAAGCAAA 59.459 47.619 0.00 0.00 31.26 3.68
1433 1487 8.005388 AGAGATTAGCAGTATTTGTCTAGGGTA 58.995 37.037 0.00 0.00 0.00 3.69
1481 1536 2.302733 TGCTCTGTTCCTGCTTGATGTA 59.697 45.455 0.00 0.00 0.00 2.29
1482 1537 3.054875 TGCTCTGTTCCTGCTTGATGTAT 60.055 43.478 0.00 0.00 0.00 2.29
1483 1538 3.559242 GCTCTGTTCCTGCTTGATGTATC 59.441 47.826 0.00 0.00 0.00 2.24
1488 1543 1.412710 TCCTGCTTGATGTATCGGGAC 59.587 52.381 0.00 0.00 0.00 4.46
1518 1573 8.812972 TGTACTAGTACCAAGACTGAATGAAAT 58.187 33.333 26.41 0.00 35.26 2.17
1519 1574 9.088512 GTACTAGTACCAAGACTGAATGAAATG 57.911 37.037 20.47 0.00 0.00 2.32
1555 1614 1.601166 GTGCCGTTTACCCTTGAGTT 58.399 50.000 0.00 0.00 0.00 3.01
1558 1617 2.224670 TGCCGTTTACCCTTGAGTTCAT 60.225 45.455 0.00 0.00 0.00 2.57
1564 1623 2.191128 ACCCTTGAGTTCATCTGCAC 57.809 50.000 0.00 0.00 0.00 4.57
1571 1630 2.027745 TGAGTTCATCTGCACTCCCTTC 60.028 50.000 7.38 0.00 37.48 3.46
1575 1634 2.370445 ATCTGCACTCCCTTCCCCG 61.370 63.158 0.00 0.00 0.00 5.73
1582 1641 1.683365 CTCCCTTCCCCGGTTCGTA 60.683 63.158 0.00 0.00 0.00 3.43
1622 1682 0.389391 AATCTATCAGTGCGTCCCCG 59.611 55.000 0.00 0.00 37.07 5.73
1623 1683 0.467474 ATCTATCAGTGCGTCCCCGA 60.467 55.000 0.00 0.00 35.63 5.14
1628 1688 2.683933 AGTGCGTCCCCGATTCCT 60.684 61.111 0.00 0.00 35.63 3.36
1664 1724 1.185315 ATCAAACTGCCCCCAAATCG 58.815 50.000 0.00 0.00 0.00 3.34
1670 1730 2.044946 GCCCCCAAATCGAGCTGT 60.045 61.111 0.00 0.00 0.00 4.40
1682 1742 2.602878 TCGAGCTGTCCGTGTTTATTC 58.397 47.619 0.00 0.00 0.00 1.75
1696 1756 4.700692 GTGTTTATTCCTGAAACCTCCCTC 59.299 45.833 0.00 0.00 36.20 4.30
1704 1764 4.355588 TCCTGAAACCTCCCTCCATTTTTA 59.644 41.667 0.00 0.00 0.00 1.52
1712 1772 4.889995 CCTCCCTCCATTTTTATTCCTCAC 59.110 45.833 0.00 0.00 0.00 3.51
1714 1774 5.509498 TCCCTCCATTTTTATTCCTCACAG 58.491 41.667 0.00 0.00 0.00 3.66
1718 1780 6.884295 CCTCCATTTTTATTCCTCACAGTACA 59.116 38.462 0.00 0.00 0.00 2.90
1732 1794 5.620206 TCACAGTACAATTTCACATCCTGT 58.380 37.500 0.00 0.00 32.48 4.00
1748 1810 2.642311 TCCTGTGTTTGCCTATGAGGAA 59.358 45.455 0.00 0.00 37.67 3.36
1755 1817 3.350219 TTGCCTATGAGGAAGTGAACC 57.650 47.619 0.00 0.00 37.67 3.62
1762 1825 4.828072 ATGAGGAAGTGAACCTAGTTCC 57.172 45.455 5.09 4.57 46.18 3.62
1780 1843 1.250154 CCGCCCATTCATGTGTGGTT 61.250 55.000 14.91 0.00 32.22 3.67
1784 1847 1.338011 CCCATTCATGTGTGGTTTGCC 60.338 52.381 14.91 0.00 33.55 4.52
1790 1853 1.538512 CATGTGTGGTTTGCCTCTGAG 59.461 52.381 0.00 0.00 35.27 3.35
1793 1856 0.843309 TGTGGTTTGCCTCTGAGGAA 59.157 50.000 27.53 15.04 37.67 3.36
1796 1859 1.202806 TGGTTTGCCTCTGAGGAAGTG 60.203 52.381 27.53 0.46 37.67 3.16
1797 1860 1.072331 GGTTTGCCTCTGAGGAAGTGA 59.928 52.381 27.53 4.21 37.67 3.41
1799 1862 0.322975 TTGCCTCTGAGGAAGTGAGC 59.677 55.000 27.53 10.13 37.67 4.26
1800 1863 1.220477 GCCTCTGAGGAAGTGAGCC 59.780 63.158 27.53 2.91 37.67 4.70
1801 1864 1.264045 GCCTCTGAGGAAGTGAGCCT 61.264 60.000 27.53 0.00 37.67 4.58
1802 1865 1.962402 GCCTCTGAGGAAGTGAGCCTA 60.962 57.143 27.53 0.00 37.67 3.93
1804 1867 2.622977 CCTCTGAGGAAGTGAGCCTAGT 60.623 54.545 19.13 0.00 37.67 2.57
1805 1868 3.096092 CTCTGAGGAAGTGAGCCTAGTT 58.904 50.000 0.00 0.00 35.44 2.24
1806 1869 3.093057 TCTGAGGAAGTGAGCCTAGTTC 58.907 50.000 0.00 0.00 35.44 3.01
1807 1870 2.167487 CTGAGGAAGTGAGCCTAGTTCC 59.833 54.545 13.84 13.84 46.18 3.62
1808 1871 3.742983 GGAAGTGAGCCTAGTTCCG 57.257 57.895 8.24 0.00 39.60 4.30
1809 1872 0.460459 GGAAGTGAGCCTAGTTCCGC 60.460 60.000 8.24 0.00 39.60 5.54
1810 1873 0.460459 GAAGTGAGCCTAGTTCCGCC 60.460 60.000 0.00 0.00 0.00 6.13
1811 1874 1.900545 AAGTGAGCCTAGTTCCGCCC 61.901 60.000 0.00 0.00 0.00 6.13
1812 1875 2.284331 TGAGCCTAGTTCCGCCCA 60.284 61.111 0.00 0.00 0.00 5.36
1813 1876 1.689233 TGAGCCTAGTTCCGCCCAT 60.689 57.895 0.00 0.00 0.00 4.00
1814 1877 1.271840 TGAGCCTAGTTCCGCCCATT 61.272 55.000 0.00 0.00 0.00 3.16
1815 1878 0.533085 GAGCCTAGTTCCGCCCATTC 60.533 60.000 0.00 0.00 0.00 2.67
1816 1879 1.223487 GCCTAGTTCCGCCCATTCA 59.777 57.895 0.00 0.00 0.00 2.57
1817 1880 0.179018 GCCTAGTTCCGCCCATTCAT 60.179 55.000 0.00 0.00 0.00 2.57
1818 1881 1.597742 CCTAGTTCCGCCCATTCATG 58.402 55.000 0.00 0.00 0.00 3.07
1819 1882 1.134098 CCTAGTTCCGCCCATTCATGT 60.134 52.381 0.00 0.00 0.00 3.21
1820 1883 1.942657 CTAGTTCCGCCCATTCATGTG 59.057 52.381 0.00 0.00 0.00 3.21
1821 1884 0.038166 AGTTCCGCCCATTCATGTGT 59.962 50.000 0.00 0.00 0.00 3.72
1822 1885 0.171007 GTTCCGCCCATTCATGTGTG 59.829 55.000 0.00 0.00 0.00 3.82
1823 1886 0.964860 TTCCGCCCATTCATGTGTGG 60.965 55.000 10.85 10.85 37.20 4.17
1824 1887 1.678635 CCGCCCATTCATGTGTGGT 60.679 57.895 14.91 0.00 32.22 4.16
1825 1888 1.250154 CCGCCCATTCATGTGTGGTT 61.250 55.000 14.91 0.00 32.22 3.67
1826 1889 0.602562 CGCCCATTCATGTGTGGTTT 59.397 50.000 14.91 0.00 33.55 3.27
1827 1890 1.669502 CGCCCATTCATGTGTGGTTTG 60.670 52.381 14.91 4.72 33.55 2.93
1828 1891 1.940752 GCCCATTCATGTGTGGTTTGC 60.941 52.381 14.91 9.44 33.55 3.68
1829 1892 1.338011 CCCATTCATGTGTGGTTTGCC 60.338 52.381 14.91 0.00 33.55 4.52
1830 1893 1.619827 CCATTCATGTGTGGTTTGCCT 59.380 47.619 9.93 0.00 35.27 4.75
1831 1894 2.353011 CCATTCATGTGTGGTTTGCCTC 60.353 50.000 9.93 0.00 35.27 4.70
1832 1895 1.327303 TTCATGTGTGGTTTGCCTCC 58.673 50.000 0.00 0.00 35.27 4.30
1833 1896 0.888736 TCATGTGTGGTTTGCCTCCG 60.889 55.000 0.00 0.00 35.27 4.63
1834 1897 0.888736 CATGTGTGGTTTGCCTCCGA 60.889 55.000 0.00 0.00 35.27 4.55
1835 1898 0.606401 ATGTGTGGTTTGCCTCCGAG 60.606 55.000 0.00 0.00 35.27 4.63
1836 1899 1.966451 GTGTGGTTTGCCTCCGAGG 60.966 63.158 10.41 10.41 38.80 4.63
1837 1900 2.144078 TGTGGTTTGCCTCCGAGGA 61.144 57.895 19.33 0.50 37.67 3.71
1838 1901 1.072505 GTGGTTTGCCTCCGAGGAA 59.927 57.895 19.33 4.41 37.67 3.36
1839 1902 0.955919 GTGGTTTGCCTCCGAGGAAG 60.956 60.000 19.33 0.00 37.67 3.46
1840 1903 1.375326 GGTTTGCCTCCGAGGAAGT 59.625 57.895 19.33 0.00 37.67 3.01
1841 1904 0.955919 GGTTTGCCTCCGAGGAAGTG 60.956 60.000 19.33 0.00 37.67 3.16
1842 1905 0.034896 GTTTGCCTCCGAGGAAGTGA 59.965 55.000 19.33 0.00 37.67 3.41
1843 1906 0.321671 TTTGCCTCCGAGGAAGTGAG 59.678 55.000 19.33 0.00 37.67 3.51
1844 1907 2.172483 TTGCCTCCGAGGAAGTGAGC 62.172 60.000 19.33 1.11 37.67 4.26
1845 1908 2.896443 CCTCCGAGGAAGTGAGCC 59.104 66.667 9.01 0.00 37.67 4.70
1846 1909 1.684049 CCTCCGAGGAAGTGAGCCT 60.684 63.158 9.01 0.00 37.67 4.58
1847 1910 0.395862 CCTCCGAGGAAGTGAGCCTA 60.396 60.000 9.01 0.00 37.67 3.93
1851 1914 1.550976 CCGAGGAAGTGAGCCTAGTTT 59.449 52.381 0.00 0.00 35.44 2.66
1860 1923 3.521126 AGTGAGCCTAGTTTCATCCATGT 59.479 43.478 0.00 0.00 0.00 3.21
1861 1924 4.716784 AGTGAGCCTAGTTTCATCCATGTA 59.283 41.667 0.00 0.00 0.00 2.29
1862 1925 5.367937 AGTGAGCCTAGTTTCATCCATGTAT 59.632 40.000 0.00 0.00 0.00 2.29
1865 1928 7.715249 GTGAGCCTAGTTTCATCCATGTATTTA 59.285 37.037 0.00 0.00 0.00 1.40
1867 1930 8.854614 AGCCTAGTTTCATCCATGTATTTATC 57.145 34.615 0.00 0.00 0.00 1.75
1868 1931 8.439971 AGCCTAGTTTCATCCATGTATTTATCA 58.560 33.333 0.00 0.00 0.00 2.15
1869 1932 8.725148 GCCTAGTTTCATCCATGTATTTATCAG 58.275 37.037 0.00 0.00 0.00 2.90
1870 1933 8.725148 CCTAGTTTCATCCATGTATTTATCAGC 58.275 37.037 0.00 0.00 0.00 4.26
1882 1947 9.935682 CATGTATTTATCAGCGTGAAAATACTT 57.064 29.630 23.00 19.36 38.80 2.24
1888 1953 5.103290 TCAGCGTGAAAATACTTTTGGAC 57.897 39.130 0.00 0.00 31.94 4.02
1890 1955 4.911610 CAGCGTGAAAATACTTTTGGACAG 59.088 41.667 0.00 0.00 31.94 3.51
1894 1959 6.622896 GCGTGAAAATACTTTTGGACAGCTAT 60.623 38.462 0.00 0.00 31.94 2.97
1976 2048 2.133641 GCAGTGTGGTTTGCCCCTT 61.134 57.895 0.00 0.00 34.28 3.95
2003 2075 3.683822 CACCTTCAATCTCTTGCTCAGTC 59.316 47.826 0.00 0.00 32.11 3.51
2020 2092 5.063944 GCTCAGTCGATTTCTATTTCTGCAA 59.936 40.000 0.00 0.00 0.00 4.08
2066 2145 2.572556 TCAATTACCCTTTCCGTGGCTA 59.427 45.455 0.00 0.00 0.00 3.93
2104 2183 4.443315 CCCAAATCAAGCTGTCTGGTTTTT 60.443 41.667 0.00 0.00 33.63 1.94
2129 2208 5.245531 CCTTTACCTGCTCTTGTGTAATGA 58.754 41.667 0.00 0.00 0.00 2.57
2161 2240 2.630580 CCATAGAGTTCAGGTAGCCCTC 59.369 54.545 0.00 0.00 39.89 4.30
2167 2246 0.970937 TTCAGGTAGCCCTCTGACCG 60.971 60.000 0.00 0.00 39.89 4.79
2201 2280 1.135286 GTTTGCCTCTGGTATTGCTGC 60.135 52.381 0.00 0.00 0.00 5.25
2259 2338 2.030451 GGGAGTTCTGCAAGCTTTTCTG 60.030 50.000 0.00 0.00 0.00 3.02
2260 2339 2.620585 GGAGTTCTGCAAGCTTTTCTGT 59.379 45.455 0.00 0.00 0.00 3.41
2261 2340 3.815401 GGAGTTCTGCAAGCTTTTCTGTA 59.185 43.478 0.00 0.00 0.00 2.74
2262 2341 4.319839 GGAGTTCTGCAAGCTTTTCTGTAC 60.320 45.833 0.00 0.55 0.00 2.90
2263 2342 4.455606 AGTTCTGCAAGCTTTTCTGTACT 58.544 39.130 0.00 2.86 0.00 2.73
2264 2343 4.274459 AGTTCTGCAAGCTTTTCTGTACTG 59.726 41.667 0.00 0.00 0.00 2.74
2265 2344 3.808728 TCTGCAAGCTTTTCTGTACTGT 58.191 40.909 0.00 0.00 0.00 3.55
2266 2345 4.956085 TCTGCAAGCTTTTCTGTACTGTA 58.044 39.130 0.00 0.00 0.00 2.74
2267 2346 4.750098 TCTGCAAGCTTTTCTGTACTGTAC 59.250 41.667 10.98 10.98 0.00 2.90
2268 2347 4.447290 TGCAAGCTTTTCTGTACTGTACA 58.553 39.130 18.77 18.77 37.13 2.90
2269 2348 5.063204 TGCAAGCTTTTCTGTACTGTACAT 58.937 37.500 19.99 1.88 38.15 2.29
2270 2349 6.227522 TGCAAGCTTTTCTGTACTGTACATA 58.772 36.000 19.99 11.15 38.15 2.29
2271 2350 6.878923 TGCAAGCTTTTCTGTACTGTACATAT 59.121 34.615 19.99 0.00 38.15 1.78
2272 2351 8.038351 TGCAAGCTTTTCTGTACTGTACATATA 58.962 33.333 19.99 6.73 38.15 0.86
2273 2352 8.328864 GCAAGCTTTTCTGTACTGTACATATAC 58.671 37.037 19.99 8.83 38.15 1.47
2274 2353 9.587772 CAAGCTTTTCTGTACTGTACATATACT 57.412 33.333 19.99 10.67 38.15 2.12
2275 2354 9.804758 AAGCTTTTCTGTACTGTACATATACTC 57.195 33.333 19.99 9.39 38.15 2.59
2276 2355 8.414778 AGCTTTTCTGTACTGTACATATACTCC 58.585 37.037 19.99 7.52 38.15 3.85
2277 2356 7.652507 GCTTTTCTGTACTGTACATATACTCCC 59.347 40.741 19.99 3.30 38.15 4.30
2278 2357 7.592885 TTTCTGTACTGTACATATACTCCCC 57.407 40.000 19.99 0.00 38.15 4.81
2279 2358 5.638133 TCTGTACTGTACATATACTCCCCC 58.362 45.833 19.99 0.00 38.15 5.40
2294 2373 3.564262 CCCCCGGTCCTTTTTACTC 57.436 57.895 0.00 0.00 0.00 2.59
2295 2374 0.989602 CCCCCGGTCCTTTTTACTCT 59.010 55.000 0.00 0.00 0.00 3.24
2296 2375 1.339727 CCCCCGGTCCTTTTTACTCTG 60.340 57.143 0.00 0.00 0.00 3.35
2297 2376 1.450025 CCCGGTCCTTTTTACTCTGC 58.550 55.000 0.00 0.00 0.00 4.26
2298 2377 1.271163 CCCGGTCCTTTTTACTCTGCA 60.271 52.381 0.00 0.00 0.00 4.41
2299 2378 1.804748 CCGGTCCTTTTTACTCTGCAC 59.195 52.381 0.00 0.00 0.00 4.57
2300 2379 2.489971 CGGTCCTTTTTACTCTGCACA 58.510 47.619 0.00 0.00 0.00 4.57
2301 2380 3.074412 CGGTCCTTTTTACTCTGCACAT 58.926 45.455 0.00 0.00 0.00 3.21
2302 2381 3.502211 CGGTCCTTTTTACTCTGCACATT 59.498 43.478 0.00 0.00 0.00 2.71
2303 2382 4.613622 CGGTCCTTTTTACTCTGCACATTG 60.614 45.833 0.00 0.00 0.00 2.82
2304 2383 4.321230 GGTCCTTTTTACTCTGCACATTGG 60.321 45.833 0.00 0.00 0.00 3.16
2305 2384 4.518970 GTCCTTTTTACTCTGCACATTGGA 59.481 41.667 0.00 0.00 0.00 3.53
2306 2385 5.183904 GTCCTTTTTACTCTGCACATTGGAT 59.816 40.000 0.00 0.00 0.00 3.41
2307 2386 5.774690 TCCTTTTTACTCTGCACATTGGATT 59.225 36.000 0.00 0.00 0.00 3.01
2308 2387 6.267471 TCCTTTTTACTCTGCACATTGGATTT 59.733 34.615 0.00 0.00 0.00 2.17
2309 2388 6.366877 CCTTTTTACTCTGCACATTGGATTTG 59.633 38.462 0.00 0.00 0.00 2.32
2310 2389 4.439305 TTACTCTGCACATTGGATTTGC 57.561 40.909 0.00 0.00 36.76 3.68
2311 2390 1.547372 ACTCTGCACATTGGATTTGCC 59.453 47.619 0.00 0.00 35.26 4.52
2312 2391 0.527113 TCTGCACATTGGATTTGCCG 59.473 50.000 0.00 0.00 40.66 5.69
2313 2392 0.527113 CTGCACATTGGATTTGCCGA 59.473 50.000 0.00 0.00 40.66 5.54
2314 2393 0.964700 TGCACATTGGATTTGCCGAA 59.035 45.000 0.00 0.00 40.66 4.30
2315 2394 1.342496 TGCACATTGGATTTGCCGAAA 59.658 42.857 0.00 0.00 40.66 3.46
2316 2395 1.994779 GCACATTGGATTTGCCGAAAG 59.005 47.619 0.00 0.00 40.66 2.62
2317 2396 2.610232 GCACATTGGATTTGCCGAAAGT 60.610 45.455 0.00 0.00 40.66 2.66
2318 2397 3.244976 CACATTGGATTTGCCGAAAGTC 58.755 45.455 0.00 0.00 40.66 3.01
2319 2398 2.890311 ACATTGGATTTGCCGAAAGTCA 59.110 40.909 0.00 0.00 40.66 3.41
2320 2399 3.320541 ACATTGGATTTGCCGAAAGTCAA 59.679 39.130 0.00 0.00 40.66 3.18
2321 2400 4.202202 ACATTGGATTTGCCGAAAGTCAAA 60.202 37.500 0.00 0.00 40.66 2.69
2322 2401 3.363341 TGGATTTGCCGAAAGTCAAAC 57.637 42.857 0.00 0.00 40.66 2.93
2323 2402 2.955660 TGGATTTGCCGAAAGTCAAACT 59.044 40.909 0.00 0.00 40.66 2.66
2324 2403 3.383185 TGGATTTGCCGAAAGTCAAACTT 59.617 39.130 0.00 0.00 38.90 2.66
2325 2404 4.142049 TGGATTTGCCGAAAGTCAAACTTT 60.142 37.500 4.82 4.82 41.99 2.66
2326 2405 6.190408 TGGATTTGCCGAAAGTCAAACTTTG 61.190 40.000 9.65 0.00 42.50 2.77
2426 2505 9.428097 TCGAAGATGAATCTAATGATATTGGTG 57.572 33.333 0.00 0.00 35.76 4.17
2427 2506 9.212641 CGAAGATGAATCTAATGATATTGGTGT 57.787 33.333 0.00 0.00 35.76 4.16
2430 2509 9.857656 AGATGAATCTAATGATATTGGTGTTGT 57.142 29.630 0.00 0.00 34.85 3.32
2437 2516 9.898152 TCTAATGATATTGGTGTTGTTATGTGA 57.102 29.630 0.00 0.00 0.00 3.58
2440 2519 9.806203 AATGATATTGGTGTTGTTATGTGAATG 57.194 29.630 0.00 0.00 0.00 2.67
2441 2520 8.347004 TGATATTGGTGTTGTTATGTGAATGT 57.653 30.769 0.00 0.00 0.00 2.71
2442 2521 8.458052 TGATATTGGTGTTGTTATGTGAATGTC 58.542 33.333 0.00 0.00 0.00 3.06
2443 2522 6.899393 ATTGGTGTTGTTATGTGAATGTCT 57.101 33.333 0.00 0.00 0.00 3.41
2444 2523 6.707440 TTGGTGTTGTTATGTGAATGTCTT 57.293 33.333 0.00 0.00 0.00 3.01
2445 2524 6.707440 TGGTGTTGTTATGTGAATGTCTTT 57.293 33.333 0.00 0.00 0.00 2.52
2446 2525 7.809546 TGGTGTTGTTATGTGAATGTCTTTA 57.190 32.000 0.00 0.00 0.00 1.85
2447 2526 8.226819 TGGTGTTGTTATGTGAATGTCTTTAA 57.773 30.769 0.00 0.00 0.00 1.52
2448 2527 8.855110 TGGTGTTGTTATGTGAATGTCTTTAAT 58.145 29.630 0.00 0.00 0.00 1.40
2449 2528 9.691362 GGTGTTGTTATGTGAATGTCTTTAATT 57.309 29.630 0.00 0.00 0.00 1.40
2484 2563 5.972107 CTTGGTCAAAGTTGGATGAGATT 57.028 39.130 0.00 0.00 0.00 2.40
2485 2564 5.706916 CTTGGTCAAAGTTGGATGAGATTG 58.293 41.667 0.00 0.00 0.00 2.67
2486 2565 4.984295 TGGTCAAAGTTGGATGAGATTGA 58.016 39.130 0.00 0.00 0.00 2.57
2487 2566 4.761739 TGGTCAAAGTTGGATGAGATTGAC 59.238 41.667 7.68 7.68 43.51 3.18
2488 2567 5.006386 GGTCAAAGTTGGATGAGATTGACT 58.994 41.667 13.97 0.00 43.66 3.41
2489 2568 5.474876 GGTCAAAGTTGGATGAGATTGACTT 59.525 40.000 13.97 0.00 43.66 3.01
2490 2569 6.348868 GGTCAAAGTTGGATGAGATTGACTTC 60.349 42.308 13.97 0.00 43.66 3.01
2491 2570 5.409520 TCAAAGTTGGATGAGATTGACTTCG 59.590 40.000 0.00 0.00 0.00 3.79
2492 2571 3.866651 AGTTGGATGAGATTGACTTCGG 58.133 45.455 0.00 0.00 0.00 4.30
2493 2572 3.515502 AGTTGGATGAGATTGACTTCGGA 59.484 43.478 0.00 0.00 0.00 4.55
2494 2573 3.526931 TGGATGAGATTGACTTCGGAC 57.473 47.619 0.00 0.00 0.00 4.79
2495 2574 2.831526 TGGATGAGATTGACTTCGGACA 59.168 45.455 0.00 0.00 0.00 4.02
2496 2575 3.260632 TGGATGAGATTGACTTCGGACAA 59.739 43.478 0.00 0.00 34.59 3.18
2497 2576 4.253685 GGATGAGATTGACTTCGGACAAA 58.746 43.478 0.00 0.00 33.90 2.83
2498 2577 4.093556 GGATGAGATTGACTTCGGACAAAC 59.906 45.833 0.00 0.00 33.90 2.93
2499 2578 3.399330 TGAGATTGACTTCGGACAAACC 58.601 45.455 0.00 0.00 33.90 3.27
2500 2579 3.071023 TGAGATTGACTTCGGACAAACCT 59.929 43.478 0.00 0.00 33.90 3.50
2501 2580 4.282449 TGAGATTGACTTCGGACAAACCTA 59.718 41.667 0.00 0.00 33.90 3.08
2502 2581 5.221561 TGAGATTGACTTCGGACAAACCTAA 60.222 40.000 0.00 0.00 33.90 2.69
2503 2582 5.805728 AGATTGACTTCGGACAAACCTAAT 58.194 37.500 0.00 0.00 33.90 1.73
2504 2583 6.942976 AGATTGACTTCGGACAAACCTAATA 58.057 36.000 0.00 0.00 33.90 0.98
2505 2584 7.565680 AGATTGACTTCGGACAAACCTAATAT 58.434 34.615 0.00 0.00 33.90 1.28
2506 2585 6.978343 TTGACTTCGGACAAACCTAATATG 57.022 37.500 0.00 0.00 36.31 1.78
2507 2586 4.873827 TGACTTCGGACAAACCTAATATGC 59.126 41.667 0.00 0.00 36.31 3.14
2508 2587 4.839121 ACTTCGGACAAACCTAATATGCA 58.161 39.130 0.00 0.00 36.31 3.96
2509 2588 4.876107 ACTTCGGACAAACCTAATATGCAG 59.124 41.667 0.00 0.00 36.31 4.41
2510 2589 4.746535 TCGGACAAACCTAATATGCAGA 57.253 40.909 0.00 0.00 36.31 4.26
2511 2590 4.693283 TCGGACAAACCTAATATGCAGAG 58.307 43.478 0.00 0.00 36.31 3.35
2512 2591 4.161565 TCGGACAAACCTAATATGCAGAGT 59.838 41.667 0.00 0.00 36.31 3.24
2513 2592 5.361571 TCGGACAAACCTAATATGCAGAGTA 59.638 40.000 0.00 0.00 36.31 2.59
2514 2593 6.046593 CGGACAAACCTAATATGCAGAGTAA 58.953 40.000 0.00 0.00 36.31 2.24
2515 2594 6.537301 CGGACAAACCTAATATGCAGAGTAAA 59.463 38.462 0.00 0.00 36.31 2.01
2516 2595 7.065324 CGGACAAACCTAATATGCAGAGTAAAA 59.935 37.037 0.00 0.00 36.31 1.52
2517 2596 8.736244 GGACAAACCTAATATGCAGAGTAAAAA 58.264 33.333 0.00 0.00 35.41 1.94
2518 2597 9.774742 GACAAACCTAATATGCAGAGTAAAAAG 57.225 33.333 0.00 0.00 0.00 2.27
2519 2598 8.739972 ACAAACCTAATATGCAGAGTAAAAAGG 58.260 33.333 0.00 0.00 0.00 3.11
2520 2599 8.956426 CAAACCTAATATGCAGAGTAAAAAGGA 58.044 33.333 2.56 0.00 0.00 3.36
2521 2600 8.507524 AACCTAATATGCAGAGTAAAAAGGAC 57.492 34.615 2.56 0.00 0.00 3.85
2522 2601 7.054751 ACCTAATATGCAGAGTAAAAAGGACC 58.945 38.462 2.56 0.00 0.00 4.46
2523 2602 6.202954 CCTAATATGCAGAGTAAAAAGGACCG 59.797 42.308 0.00 0.00 0.00 4.79
2524 2603 3.695830 ATGCAGAGTAAAAAGGACCGA 57.304 42.857 0.00 0.00 0.00 4.69
2525 2604 3.478857 TGCAGAGTAAAAAGGACCGAA 57.521 42.857 0.00 0.00 0.00 4.30
2526 2605 3.399330 TGCAGAGTAAAAAGGACCGAAG 58.601 45.455 0.00 0.00 0.00 3.79
2527 2606 3.070446 TGCAGAGTAAAAAGGACCGAAGA 59.930 43.478 0.00 0.00 0.00 2.87
2528 2607 3.680458 GCAGAGTAAAAAGGACCGAAGAG 59.320 47.826 0.00 0.00 0.00 2.85
2529 2608 4.560919 GCAGAGTAAAAAGGACCGAAGAGA 60.561 45.833 0.00 0.00 0.00 3.10
2530 2609 5.164954 CAGAGTAAAAAGGACCGAAGAGAG 58.835 45.833 0.00 0.00 0.00 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.877178 CTCTAGACCTTTCTGTAACAAATGTAT 57.123 33.333 0.00 0.00 32.75 2.29
46 47 1.675310 CTTGGAGGCGTTGGCATGA 60.675 57.895 0.00 0.00 42.47 3.07
84 85 0.248012 TTCGGCGATTAAGTGCTCCA 59.752 50.000 11.76 0.00 0.00 3.86
100 101 1.135402 GGCAAGTATTTGGGTGCTTCG 60.135 52.381 0.00 0.00 37.17 3.79
156 157 1.529438 TCGTGGCTCGTGAATTGTTTC 59.471 47.619 8.94 0.00 40.80 2.78
161 162 0.949105 GGTGTCGTGGCTCGTGAATT 60.949 55.000 8.94 0.00 40.80 2.17
175 176 5.183904 AGCTAAAATTTGAGTGGATGGTGTC 59.816 40.000 4.42 0.00 0.00 3.67
210 211 2.891580 GCTAGAAGATGTATCCCACCGA 59.108 50.000 0.00 0.00 0.00 4.69
214 215 4.556697 TCAAGGCTAGAAGATGTATCCCA 58.443 43.478 0.00 0.00 0.00 4.37
227 228 4.128925 TGTAGCTCATGTTCAAGGCTAG 57.871 45.455 0.00 0.00 36.39 3.42
228 229 4.445453 CATGTAGCTCATGTTCAAGGCTA 58.555 43.478 14.42 0.00 46.18 3.93
229 230 3.276857 CATGTAGCTCATGTTCAAGGCT 58.723 45.455 14.42 0.00 46.18 4.58
230 231 3.687572 CATGTAGCTCATGTTCAAGGC 57.312 47.619 14.42 0.00 46.18 4.35
314 339 2.890371 CCTTTGGCCATGAGCTGC 59.110 61.111 6.09 0.00 43.05 5.25
363 388 0.240945 GCAACTTGGCACTTACGCAT 59.759 50.000 0.00 0.00 0.00 4.73
369 394 0.465287 CTTTGGGCAACTTGGCACTT 59.535 50.000 16.53 0.00 45.76 3.16
370 395 0.687427 ACTTTGGGCAACTTGGCACT 60.687 50.000 16.53 0.00 45.76 4.40
378 403 1.956477 ACTGATGACACTTTGGGCAAC 59.044 47.619 0.00 0.00 0.00 4.17
414 439 1.064463 CATGGAGGCCTTACCACATGT 60.064 52.381 15.21 0.00 44.64 3.21
470 495 6.324770 GGTGGATGGAAGTAATGATGGAAAAT 59.675 38.462 0.00 0.00 0.00 1.82
473 498 4.229353 TGGTGGATGGAAGTAATGATGGAA 59.771 41.667 0.00 0.00 0.00 3.53
475 500 4.169059 TGGTGGATGGAAGTAATGATGG 57.831 45.455 0.00 0.00 0.00 3.51
486 511 1.275291 GACGAAGACTTGGTGGATGGA 59.725 52.381 7.66 0.00 0.00 3.41
487 512 1.676014 GGACGAAGACTTGGTGGATGG 60.676 57.143 7.66 0.00 0.00 3.51
488 513 1.276421 AGGACGAAGACTTGGTGGATG 59.724 52.381 7.66 0.00 0.00 3.51
489 514 1.550976 GAGGACGAAGACTTGGTGGAT 59.449 52.381 7.66 0.00 0.00 3.41
512 537 1.435515 GCACTTTGTGTTTGGGCGA 59.564 52.632 0.00 0.00 35.75 5.54
522 549 3.550820 TGAGTGTAACATGGCACTTTGT 58.449 40.909 16.95 0.00 44.89 2.83
556 583 1.002624 GGACACCGGATTCTTGGCA 60.003 57.895 9.46 0.00 0.00 4.92
576 603 3.434319 GCAGTGTGCGGACCATGG 61.434 66.667 11.19 11.19 31.71 3.66
607 634 7.032580 CGGCAGATTTATTACATCACCAAAAA 58.967 34.615 0.00 0.00 0.00 1.94
611 638 4.776349 ACGGCAGATTTATTACATCACCA 58.224 39.130 0.00 0.00 0.00 4.17
647 674 2.159043 TCTTTATCTGGAGGCTTGCTCG 60.159 50.000 0.00 0.00 0.00 5.03
674 701 9.540538 TGGAAAATTGATGTCCCTTTTAAGATA 57.459 29.630 0.00 0.00 0.00 1.98
680 707 5.885449 TGTGGAAAATTGATGTCCCTTTT 57.115 34.783 0.00 0.00 0.00 2.27
717 744 4.047059 CTGTGCAAGGGCGGCAAG 62.047 66.667 12.47 0.03 43.91 4.01
718 745 4.892965 ACTGTGCAAGGGCGGCAA 62.893 61.111 12.47 0.00 43.91 4.52
724 751 3.297620 GTGGCCACTGTGCAAGGG 61.298 66.667 29.12 0.00 0.00 3.95
725 752 3.297620 GGTGGCCACTGTGCAAGG 61.298 66.667 33.91 0.00 0.00 3.61
726 753 2.519063 TGGTGGCCACTGTGCAAG 60.519 61.111 33.91 0.00 0.00 4.01
727 754 2.519063 CTGGTGGCCACTGTGCAA 60.519 61.111 33.91 12.71 0.00 4.08
783 817 1.134694 GCGGAGTGGTTTTCGATGC 59.865 57.895 0.00 0.00 0.00 3.91
805 839 0.252375 GGAGGGTGTAGTGTGGGGTA 60.252 60.000 0.00 0.00 0.00 3.69
811 845 2.203728 TGGCGGAGGGTGTAGTGT 60.204 61.111 0.00 0.00 0.00 3.55
822 856 2.411701 GATCGATGACGTGGCGGA 59.588 61.111 0.54 0.00 40.69 5.54
834 868 2.833582 GAGGGAGCCACGGATCGA 60.834 66.667 0.00 0.00 0.00 3.59
846 880 1.613630 GAGAGTGGGCAAGGAGGGA 60.614 63.158 0.00 0.00 0.00 4.20
854 889 2.659063 CGATGGTGGAGAGTGGGCA 61.659 63.158 0.00 0.00 0.00 5.36
863 898 2.099652 GATGGCGGATCGATGGTGGA 62.100 60.000 0.54 0.00 0.00 4.02
878 913 1.029408 TGATTTCCGCCGTTGGATGG 61.029 55.000 0.00 0.00 38.00 3.51
942 977 3.556423 GGTGAGGTGGGTTAATATAGCCG 60.556 52.174 0.00 0.00 38.54 5.52
969 1005 2.300967 TGGAGGATGGTGGTGGAGC 61.301 63.158 0.00 0.00 0.00 4.70
987 1023 1.536662 GAGTGGTGGAGGTGGAGGT 60.537 63.158 0.00 0.00 0.00 3.85
1016 1052 1.264749 TGTCTCTCCGGTGGGATTGG 61.265 60.000 9.74 0.00 42.83 3.16
1036 1072 0.459237 CCGCTGATTCGCTTCTCTGT 60.459 55.000 0.00 0.00 0.00 3.41
1037 1073 1.760268 GCCGCTGATTCGCTTCTCTG 61.760 60.000 0.00 0.00 0.00 3.35
1039 1075 2.864931 CGCCGCTGATTCGCTTCTC 61.865 63.158 0.00 0.00 0.00 2.87
1040 1076 2.887568 CGCCGCTGATTCGCTTCT 60.888 61.111 0.00 0.00 0.00 2.85
1041 1077 3.929948 CCGCCGCTGATTCGCTTC 61.930 66.667 0.00 0.00 0.00 3.86
1047 1083 3.740128 ATCTTCGCCGCCGCTGATT 62.740 57.895 0.00 0.00 0.00 2.57
1048 1084 4.227134 ATCTTCGCCGCCGCTGAT 62.227 61.111 0.00 0.00 0.00 2.90
1129 1165 1.811266 CTGGATGTTGTCGCGGAGG 60.811 63.158 6.13 0.00 0.00 4.30
1382 1418 2.174319 GCTTGAAGATCCCGGCGTC 61.174 63.158 6.01 0.00 0.00 5.19
1391 1427 5.979288 AATCTCTTTGCTTGCTTGAAGAT 57.021 34.783 0.00 0.00 32.82 2.40
1394 1430 4.520111 TGCTAATCTCTTTGCTTGCTTGAA 59.480 37.500 0.00 0.00 34.69 2.69
1397 1433 4.077822 ACTGCTAATCTCTTTGCTTGCTT 58.922 39.130 0.00 0.00 34.69 3.91
1401 1437 7.609532 AGACAAATACTGCTAATCTCTTTGCTT 59.390 33.333 0.00 0.00 34.69 3.91
1407 1443 6.841755 ACCCTAGACAAATACTGCTAATCTCT 59.158 38.462 0.00 0.00 0.00 3.10
1433 1487 0.249322 CAACACCGAAGAGACCACGT 60.249 55.000 0.00 0.00 0.00 4.49
1482 1537 2.485479 GGTACTAGTACATCGGTCCCGA 60.485 54.545 29.38 11.33 41.39 5.14
1483 1538 1.876156 GGTACTAGTACATCGGTCCCG 59.124 57.143 29.38 0.00 37.78 5.14
1488 1543 4.880120 TCAGTCTTGGTACTAGTACATCGG 59.120 45.833 29.38 17.58 37.78 4.18
1518 1573 3.056465 GGCACCGTAATTTCCAAATTCCA 60.056 43.478 0.45 0.00 39.24 3.53
1519 1574 3.517602 GGCACCGTAATTTCCAAATTCC 58.482 45.455 0.45 0.00 39.24 3.01
1535 1591 0.250597 ACTCAAGGGTAAACGGCACC 60.251 55.000 0.00 0.00 35.15 5.01
1555 1614 1.274703 GGGGAAGGGAGTGCAGATGA 61.275 60.000 0.00 0.00 0.00 2.92
1558 1617 3.003173 CGGGGAAGGGAGTGCAGA 61.003 66.667 0.00 0.00 0.00 4.26
1564 1623 1.047034 ATACGAACCGGGGAAGGGAG 61.047 60.000 6.32 0.00 35.02 4.30
1571 1630 2.096819 CACAAATCAATACGAACCGGGG 59.903 50.000 6.32 0.00 0.00 5.73
1575 1634 3.120477 TCGTGCACAAATCAATACGAACC 60.120 43.478 18.64 0.00 37.58 3.62
1664 1724 2.673368 CAGGAATAAACACGGACAGCTC 59.327 50.000 0.00 0.00 0.00 4.09
1670 1730 4.320870 GAGGTTTCAGGAATAAACACGGA 58.679 43.478 0.00 0.00 38.34 4.69
1682 1742 2.907458 AAATGGAGGGAGGTTTCAGG 57.093 50.000 0.00 0.00 0.00 3.86
1696 1756 9.927668 AAATTGTACTGTGAGGAATAAAAATGG 57.072 29.630 0.00 0.00 0.00 3.16
1704 1764 6.375455 GGATGTGAAATTGTACTGTGAGGAAT 59.625 38.462 0.00 0.00 0.00 3.01
1724 1786 5.856445 TCCTCATAGGCAAACACAGGATGT 61.856 45.833 0.00 0.00 43.56 3.06
1732 1794 4.072131 GTTCACTTCCTCATAGGCAAACA 58.928 43.478 0.00 0.00 34.61 2.83
1735 1797 2.912956 AGGTTCACTTCCTCATAGGCAA 59.087 45.455 0.00 0.00 34.61 4.52
1741 1803 3.195825 CGGAACTAGGTTCACTTCCTCAT 59.804 47.826 11.67 0.00 43.54 2.90
1748 1810 0.834687 TGGGCGGAACTAGGTTCACT 60.835 55.000 11.67 0.00 43.54 3.41
1755 1817 1.942657 CACATGAATGGGCGGAACTAG 59.057 52.381 0.00 0.00 0.00 2.57
1762 1825 0.602562 AAACCACACATGAATGGGCG 59.397 50.000 19.68 0.35 40.59 6.13
1780 1843 0.322975 GCTCACTTCCTCAGAGGCAA 59.677 55.000 12.26 6.40 34.61 4.52
1784 1847 2.733956 ACTAGGCTCACTTCCTCAGAG 58.266 52.381 0.00 0.00 35.21 3.35
1790 1853 0.460459 GCGGAACTAGGCTCACTTCC 60.460 60.000 0.00 0.00 0.00 3.46
1793 1856 2.359967 GGGCGGAACTAGGCTCACT 61.360 63.158 0.00 0.00 0.00 3.41
1796 1859 0.533085 GAATGGGCGGAACTAGGCTC 60.533 60.000 0.00 0.00 0.00 4.70
1797 1860 1.271840 TGAATGGGCGGAACTAGGCT 61.272 55.000 0.00 0.00 0.00 4.58
1799 1862 1.134098 ACATGAATGGGCGGAACTAGG 60.134 52.381 0.00 0.00 0.00 3.02
1800 1863 1.942657 CACATGAATGGGCGGAACTAG 59.057 52.381 0.00 0.00 0.00 2.57
1801 1864 1.280710 ACACATGAATGGGCGGAACTA 59.719 47.619 0.00 0.00 33.50 2.24
1802 1865 0.038166 ACACATGAATGGGCGGAACT 59.962 50.000 0.00 0.00 33.50 3.01
1804 1867 0.964860 CCACACATGAATGGGCGGAA 60.965 55.000 0.00 0.00 35.41 4.30
1805 1868 1.378382 CCACACATGAATGGGCGGA 60.378 57.895 0.00 0.00 35.41 5.54
1806 1869 1.250154 AACCACACATGAATGGGCGG 61.250 55.000 19.68 0.00 39.29 6.13
1807 1870 0.602562 AAACCACACATGAATGGGCG 59.397 50.000 19.68 0.35 40.59 6.13
1808 1871 1.940752 GCAAACCACACATGAATGGGC 60.941 52.381 19.68 12.08 40.59 5.36
1809 1872 1.338011 GGCAAACCACACATGAATGGG 60.338 52.381 19.68 9.55 40.59 4.00
1810 1873 1.619827 AGGCAAACCACACATGAATGG 59.380 47.619 15.66 15.66 42.13 3.16
1811 1874 2.353011 GGAGGCAAACCACACATGAATG 60.353 50.000 0.00 0.00 39.06 2.67
1812 1875 1.895131 GGAGGCAAACCACACATGAAT 59.105 47.619 0.00 0.00 39.06 2.57
1813 1876 1.327303 GGAGGCAAACCACACATGAA 58.673 50.000 0.00 0.00 39.06 2.57
1814 1877 0.888736 CGGAGGCAAACCACACATGA 60.889 55.000 0.00 0.00 39.06 3.07
1815 1878 0.888736 TCGGAGGCAAACCACACATG 60.889 55.000 0.00 0.00 39.06 3.21
1816 1879 0.606401 CTCGGAGGCAAACCACACAT 60.606 55.000 0.00 0.00 39.06 3.21
1817 1880 1.227823 CTCGGAGGCAAACCACACA 60.228 57.895 0.00 0.00 39.06 3.72
1818 1881 1.966451 CCTCGGAGGCAAACCACAC 60.966 63.158 11.83 0.00 39.06 3.82
1819 1882 1.701031 TTCCTCGGAGGCAAACCACA 61.701 55.000 19.48 0.00 39.06 4.17
1820 1883 0.955919 CTTCCTCGGAGGCAAACCAC 60.956 60.000 19.48 0.00 39.06 4.16
1821 1884 1.374947 CTTCCTCGGAGGCAAACCA 59.625 57.895 19.48 0.00 39.06 3.67
1822 1885 0.955919 CACTTCCTCGGAGGCAAACC 60.956 60.000 19.48 0.00 34.61 3.27
1823 1886 0.034896 TCACTTCCTCGGAGGCAAAC 59.965 55.000 19.48 0.00 34.61 2.93
1824 1887 0.321671 CTCACTTCCTCGGAGGCAAA 59.678 55.000 19.48 8.49 34.61 3.68
1825 1888 1.975327 CTCACTTCCTCGGAGGCAA 59.025 57.895 19.48 12.77 34.61 4.52
1826 1889 2.650116 GCTCACTTCCTCGGAGGCA 61.650 63.158 19.48 7.79 34.61 4.75
1827 1890 2.185608 GCTCACTTCCTCGGAGGC 59.814 66.667 19.48 1.75 34.61 4.70
1828 1891 0.395862 TAGGCTCACTTCCTCGGAGG 60.396 60.000 18.25 18.25 35.21 4.30
1829 1892 1.028905 CTAGGCTCACTTCCTCGGAG 58.971 60.000 0.00 0.00 35.21 4.63
1830 1893 0.331954 ACTAGGCTCACTTCCTCGGA 59.668 55.000 0.00 0.00 35.21 4.55
1831 1894 1.187087 AACTAGGCTCACTTCCTCGG 58.813 55.000 0.00 0.00 35.21 4.63
1832 1895 2.231478 TGAAACTAGGCTCACTTCCTCG 59.769 50.000 0.00 0.00 35.21 4.63
1833 1896 3.963428 TGAAACTAGGCTCACTTCCTC 57.037 47.619 0.00 0.00 35.21 3.71
1834 1897 3.198853 GGATGAAACTAGGCTCACTTCCT 59.801 47.826 0.00 0.00 37.72 3.36
1835 1898 3.055094 TGGATGAAACTAGGCTCACTTCC 60.055 47.826 0.00 2.34 0.00 3.46
1836 1899 4.207891 TGGATGAAACTAGGCTCACTTC 57.792 45.455 0.00 0.00 0.00 3.01
1837 1900 4.018960 ACATGGATGAAACTAGGCTCACTT 60.019 41.667 0.00 0.00 0.00 3.16
1838 1901 3.521126 ACATGGATGAAACTAGGCTCACT 59.479 43.478 0.00 0.00 0.00 3.41
1839 1902 3.878778 ACATGGATGAAACTAGGCTCAC 58.121 45.455 0.00 0.00 0.00 3.51
1840 1903 5.894298 ATACATGGATGAAACTAGGCTCA 57.106 39.130 0.00 0.00 0.00 4.26
1841 1904 8.854614 ATAAATACATGGATGAAACTAGGCTC 57.145 34.615 0.00 0.00 0.00 4.70
1842 1905 8.439971 TGATAAATACATGGATGAAACTAGGCT 58.560 33.333 0.00 0.00 0.00 4.58
1843 1906 8.621532 TGATAAATACATGGATGAAACTAGGC 57.378 34.615 0.00 0.00 0.00 3.93
1844 1907 8.725148 GCTGATAAATACATGGATGAAACTAGG 58.275 37.037 0.00 0.00 0.00 3.02
1845 1908 8.438513 CGCTGATAAATACATGGATGAAACTAG 58.561 37.037 0.00 0.00 0.00 2.57
1846 1909 7.931407 ACGCTGATAAATACATGGATGAAACTA 59.069 33.333 0.00 0.00 0.00 2.24
1847 1910 6.767902 ACGCTGATAAATACATGGATGAAACT 59.232 34.615 0.00 0.00 0.00 2.66
1851 1914 5.852827 TCACGCTGATAAATACATGGATGA 58.147 37.500 0.00 0.00 0.00 2.92
1890 1955 6.129393 CGCATTTTGACATGTACAGTATAGC 58.871 40.000 0.00 0.00 0.00 2.97
1894 1959 4.752604 ACACGCATTTTGACATGTACAGTA 59.247 37.500 0.00 0.00 0.00 2.74
1976 2048 6.475504 TGAGCAAGAGATTGAAGGTGAATTA 58.524 36.000 0.00 0.00 0.00 1.40
2020 2092 5.911752 ACGAACTGATAAGATTCAGCATCT 58.088 37.500 1.51 0.00 45.75 2.90
2066 2145 3.883830 TTTGGGCGCAATTTGATACAT 57.116 38.095 17.68 0.00 0.00 2.29
2104 2183 1.142870 ACACAAGAGCAGGTAAAGGCA 59.857 47.619 0.00 0.00 0.00 4.75
2129 2208 0.105453 ACTCTATGGGAGGCGATGGT 60.105 55.000 0.00 0.00 45.83 3.55
2161 2240 0.609131 ACAAAATCCAGGCCGGTCAG 60.609 55.000 9.71 0.00 35.57 3.51
2167 2246 1.511850 GCAAACACAAAATCCAGGCC 58.488 50.000 0.00 0.00 0.00 5.19
2173 2252 3.733443 ACCAGAGGCAAACACAAAATC 57.267 42.857 0.00 0.00 0.00 2.17
2201 2280 5.107109 TCTGAAAACACATGGATGAAACG 57.893 39.130 0.00 0.00 0.00 3.60
2276 2355 0.989602 AGAGTAAAAAGGACCGGGGG 59.010 55.000 6.32 0.00 0.00 5.40
2277 2356 1.949079 GCAGAGTAAAAAGGACCGGGG 60.949 57.143 6.32 0.00 0.00 5.73
2278 2357 1.271163 TGCAGAGTAAAAAGGACCGGG 60.271 52.381 6.32 0.00 0.00 5.73
2279 2358 1.804748 GTGCAGAGTAAAAAGGACCGG 59.195 52.381 0.00 0.00 0.00 5.28
2280 2359 2.489971 TGTGCAGAGTAAAAAGGACCG 58.510 47.619 0.00 0.00 0.00 4.79
2281 2360 4.321230 CCAATGTGCAGAGTAAAAAGGACC 60.321 45.833 0.00 0.00 0.00 4.46
2282 2361 4.518970 TCCAATGTGCAGAGTAAAAAGGAC 59.481 41.667 0.00 0.00 0.00 3.85
2283 2362 4.724399 TCCAATGTGCAGAGTAAAAAGGA 58.276 39.130 0.00 0.00 0.00 3.36
2284 2363 5.649782 ATCCAATGTGCAGAGTAAAAAGG 57.350 39.130 0.00 0.00 0.00 3.11
2285 2364 6.128742 GCAAATCCAATGTGCAGAGTAAAAAG 60.129 38.462 0.00 0.00 38.19 2.27
2286 2365 5.695816 GCAAATCCAATGTGCAGAGTAAAAA 59.304 36.000 0.00 0.00 38.19 1.94
2287 2366 5.229423 GCAAATCCAATGTGCAGAGTAAAA 58.771 37.500 0.00 0.00 38.19 1.52
2288 2367 4.321899 GGCAAATCCAATGTGCAGAGTAAA 60.322 41.667 4.59 0.00 40.12 2.01
2289 2368 3.193267 GGCAAATCCAATGTGCAGAGTAA 59.807 43.478 4.59 0.00 40.12 2.24
2290 2369 2.754552 GGCAAATCCAATGTGCAGAGTA 59.245 45.455 4.59 0.00 40.12 2.59
2291 2370 1.547372 GGCAAATCCAATGTGCAGAGT 59.453 47.619 4.59 0.00 40.12 3.24
2292 2371 1.468565 CGGCAAATCCAATGTGCAGAG 60.469 52.381 4.59 0.00 40.12 3.35
2293 2372 0.527113 CGGCAAATCCAATGTGCAGA 59.473 50.000 4.59 0.00 40.12 4.26
2294 2373 0.527113 TCGGCAAATCCAATGTGCAG 59.473 50.000 4.59 0.65 40.12 4.41
2295 2374 0.964700 TTCGGCAAATCCAATGTGCA 59.035 45.000 4.59 0.00 40.12 4.57
2296 2375 1.994779 CTTTCGGCAAATCCAATGTGC 59.005 47.619 0.00 0.00 37.55 4.57
2297 2376 3.244976 GACTTTCGGCAAATCCAATGTG 58.755 45.455 0.00 0.00 34.01 3.21
2298 2377 2.890311 TGACTTTCGGCAAATCCAATGT 59.110 40.909 0.00 0.00 34.01 2.71
2299 2378 3.574284 TGACTTTCGGCAAATCCAATG 57.426 42.857 0.00 0.00 34.01 2.82
2300 2379 4.039124 AGTTTGACTTTCGGCAAATCCAAT 59.961 37.500 0.00 0.00 36.51 3.16
2301 2380 3.383185 AGTTTGACTTTCGGCAAATCCAA 59.617 39.130 0.00 0.00 36.51 3.53
2302 2381 2.955660 AGTTTGACTTTCGGCAAATCCA 59.044 40.909 0.00 0.00 36.51 3.41
2303 2382 3.643159 AGTTTGACTTTCGGCAAATCC 57.357 42.857 0.00 0.00 36.51 3.01
2304 2383 4.318050 GCAAAGTTTGACTTTCGGCAAATC 60.318 41.667 19.82 0.00 44.47 2.17
2305 2384 3.555547 GCAAAGTTTGACTTTCGGCAAAT 59.444 39.130 19.82 0.00 44.47 2.32
2306 2385 2.926838 GCAAAGTTTGACTTTCGGCAAA 59.073 40.909 19.82 0.00 44.47 3.68
2307 2386 2.165437 AGCAAAGTTTGACTTTCGGCAA 59.835 40.909 19.82 0.00 44.47 4.52
2308 2387 1.748493 AGCAAAGTTTGACTTTCGGCA 59.252 42.857 19.82 0.00 44.47 5.69
2309 2388 2.492019 AGCAAAGTTTGACTTTCGGC 57.508 45.000 19.82 5.65 44.47 5.54
2310 2389 5.169836 ACTTAGCAAAGTTTGACTTTCGG 57.830 39.130 19.82 8.79 44.47 4.30
2400 2479 9.428097 CACCAATATCATTAGATTCATCTTCGA 57.572 33.333 0.00 0.00 38.32 3.71
2401 2480 9.212641 ACACCAATATCATTAGATTCATCTTCG 57.787 33.333 0.00 0.00 38.32 3.79
2404 2483 9.857656 ACAACACCAATATCATTAGATTCATCT 57.142 29.630 0.00 0.00 40.86 2.90
2411 2490 9.898152 TCACATAACAACACCAATATCATTAGA 57.102 29.630 0.00 0.00 0.00 2.10
2414 2493 9.806203 CATTCACATAACAACACCAATATCATT 57.194 29.630 0.00 0.00 0.00 2.57
2415 2494 8.970020 ACATTCACATAACAACACCAATATCAT 58.030 29.630 0.00 0.00 0.00 2.45
2416 2495 8.347004 ACATTCACATAACAACACCAATATCA 57.653 30.769 0.00 0.00 0.00 2.15
2417 2496 8.677300 AGACATTCACATAACAACACCAATATC 58.323 33.333 0.00 0.00 0.00 1.63
2418 2497 8.579850 AGACATTCACATAACAACACCAATAT 57.420 30.769 0.00 0.00 0.00 1.28
2419 2498 7.994425 AGACATTCACATAACAACACCAATA 57.006 32.000 0.00 0.00 0.00 1.90
2420 2499 6.899393 AGACATTCACATAACAACACCAAT 57.101 33.333 0.00 0.00 0.00 3.16
2421 2500 6.707440 AAGACATTCACATAACAACACCAA 57.293 33.333 0.00 0.00 0.00 3.67
2422 2501 6.707440 AAAGACATTCACATAACAACACCA 57.293 33.333 0.00 0.00 0.00 4.17
2423 2502 9.691362 AATTAAAGACATTCACATAACAACACC 57.309 29.630 0.00 0.00 0.00 4.16
2462 2541 5.474532 TCAATCTCATCCAACTTTGACCAAG 59.525 40.000 0.00 0.00 38.64 3.61
2463 2542 5.241506 GTCAATCTCATCCAACTTTGACCAA 59.758 40.000 0.00 0.00 37.86 3.67
2464 2543 4.761739 GTCAATCTCATCCAACTTTGACCA 59.238 41.667 0.00 0.00 37.86 4.02
2465 2544 5.006386 AGTCAATCTCATCCAACTTTGACC 58.994 41.667 9.31 0.00 42.29 4.02
2466 2545 6.566197 AAGTCAATCTCATCCAACTTTGAC 57.434 37.500 5.67 5.67 41.88 3.18
2467 2546 5.409520 CGAAGTCAATCTCATCCAACTTTGA 59.590 40.000 0.00 0.00 32.33 2.69
2468 2547 5.391310 CCGAAGTCAATCTCATCCAACTTTG 60.391 44.000 0.00 0.00 0.00 2.77
2469 2548 4.697352 CCGAAGTCAATCTCATCCAACTTT 59.303 41.667 0.00 0.00 0.00 2.66
2470 2549 4.020218 TCCGAAGTCAATCTCATCCAACTT 60.020 41.667 0.00 0.00 0.00 2.66
2471 2550 3.515502 TCCGAAGTCAATCTCATCCAACT 59.484 43.478 0.00 0.00 0.00 3.16
2472 2551 3.619038 GTCCGAAGTCAATCTCATCCAAC 59.381 47.826 0.00 0.00 0.00 3.77
2473 2552 3.260632 TGTCCGAAGTCAATCTCATCCAA 59.739 43.478 0.00 0.00 0.00 3.53
2474 2553 2.831526 TGTCCGAAGTCAATCTCATCCA 59.168 45.455 0.00 0.00 0.00 3.41
2475 2554 3.526931 TGTCCGAAGTCAATCTCATCC 57.473 47.619 0.00 0.00 0.00 3.51
2476 2555 4.093556 GGTTTGTCCGAAGTCAATCTCATC 59.906 45.833 0.00 0.00 0.00 2.92
2477 2556 4.003648 GGTTTGTCCGAAGTCAATCTCAT 58.996 43.478 0.00 0.00 0.00 2.90
2478 2557 3.071023 AGGTTTGTCCGAAGTCAATCTCA 59.929 43.478 0.00 0.00 41.99 3.27
2479 2558 3.665190 AGGTTTGTCCGAAGTCAATCTC 58.335 45.455 0.00 0.00 41.99 2.75
2480 2559 3.771577 AGGTTTGTCCGAAGTCAATCT 57.228 42.857 0.00 0.00 41.99 2.40
2481 2560 7.630924 CATATTAGGTTTGTCCGAAGTCAATC 58.369 38.462 0.00 0.00 41.99 2.67
2482 2561 6.038271 GCATATTAGGTTTGTCCGAAGTCAAT 59.962 38.462 0.00 0.00 41.99 2.57
2483 2562 5.353123 GCATATTAGGTTTGTCCGAAGTCAA 59.647 40.000 0.00 0.00 41.99 3.18
2484 2563 4.873827 GCATATTAGGTTTGTCCGAAGTCA 59.126 41.667 0.00 0.00 41.99 3.41
2485 2564 4.873827 TGCATATTAGGTTTGTCCGAAGTC 59.126 41.667 0.00 0.00 41.99 3.01
2486 2565 4.839121 TGCATATTAGGTTTGTCCGAAGT 58.161 39.130 0.00 0.00 41.99 3.01
2487 2566 5.116180 TCTGCATATTAGGTTTGTCCGAAG 58.884 41.667 0.00 0.00 41.99 3.79
2488 2567 5.092554 TCTGCATATTAGGTTTGTCCGAA 57.907 39.130 0.00 0.00 41.99 4.30
2489 2568 4.161565 ACTCTGCATATTAGGTTTGTCCGA 59.838 41.667 0.00 0.00 41.99 4.55
2490 2569 4.442706 ACTCTGCATATTAGGTTTGTCCG 58.557 43.478 0.00 0.00 41.99 4.79
2491 2570 7.859325 TTTACTCTGCATATTAGGTTTGTCC 57.141 36.000 0.00 0.00 0.00 4.02
2492 2571 9.774742 CTTTTTACTCTGCATATTAGGTTTGTC 57.225 33.333 0.00 0.00 0.00 3.18
2493 2572 8.739972 CCTTTTTACTCTGCATATTAGGTTTGT 58.260 33.333 0.00 0.00 0.00 2.83
2494 2573 8.956426 TCCTTTTTACTCTGCATATTAGGTTTG 58.044 33.333 0.00 0.00 0.00 2.93
2495 2574 8.957466 GTCCTTTTTACTCTGCATATTAGGTTT 58.043 33.333 0.00 0.00 0.00 3.27
2496 2575 7.556635 GGTCCTTTTTACTCTGCATATTAGGTT 59.443 37.037 0.00 0.00 0.00 3.50
2497 2576 7.054751 GGTCCTTTTTACTCTGCATATTAGGT 58.945 38.462 0.00 0.00 0.00 3.08
2498 2577 6.202954 CGGTCCTTTTTACTCTGCATATTAGG 59.797 42.308 0.00 0.00 0.00 2.69
2499 2578 6.984474 TCGGTCCTTTTTACTCTGCATATTAG 59.016 38.462 0.00 0.00 0.00 1.73
2500 2579 6.880484 TCGGTCCTTTTTACTCTGCATATTA 58.120 36.000 0.00 0.00 0.00 0.98
2501 2580 5.741011 TCGGTCCTTTTTACTCTGCATATT 58.259 37.500 0.00 0.00 0.00 1.28
2502 2581 5.353394 TCGGTCCTTTTTACTCTGCATAT 57.647 39.130 0.00 0.00 0.00 1.78
2503 2582 4.811969 TCGGTCCTTTTTACTCTGCATA 57.188 40.909 0.00 0.00 0.00 3.14
2504 2583 3.695830 TCGGTCCTTTTTACTCTGCAT 57.304 42.857 0.00 0.00 0.00 3.96
2505 2584 3.070446 TCTTCGGTCCTTTTTACTCTGCA 59.930 43.478 0.00 0.00 0.00 4.41
2506 2585 3.660865 TCTTCGGTCCTTTTTACTCTGC 58.339 45.455 0.00 0.00 0.00 4.26
2507 2586 5.135508 TCTCTTCGGTCCTTTTTACTCTG 57.864 43.478 0.00 0.00 0.00 3.35
2508 2587 5.394224 CTCTCTTCGGTCCTTTTTACTCT 57.606 43.478 0.00 0.00 0.00 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.