Multiple sequence alignment - TraesCS5A01G299200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G299200 chr5A 100.000 6995 0 0 1 6995 508611663 508618657 0.000000e+00 12918.0
1 TraesCS5A01G299200 chr5A 100.000 2074 0 0 7338 9411 508619000 508621073 0.000000e+00 3831.0
2 TraesCS5A01G299200 chr5A 88.333 2160 209 24 4859 6991 508217642 508219785 0.000000e+00 2553.0
3 TraesCS5A01G299200 chr5A 93.052 1209 51 8 3 1192 508551961 508553155 0.000000e+00 1736.0
4 TraesCS5A01G299200 chr5A 93.100 1116 47 3 1 1098 508528092 508529195 0.000000e+00 1607.0
5 TraesCS5A01G299200 chr5A 87.978 1098 68 27 2386 3434 526283459 526284541 0.000000e+00 1238.0
6 TraesCS5A01G299200 chr5A 85.962 1097 79 29 2386 3434 525746042 525747111 0.000000e+00 1103.0
7 TraesCS5A01G299200 chr5A 85.858 1096 79 27 2387 3434 525748908 525749975 0.000000e+00 1096.0
8 TraesCS5A01G299200 chr5A 85.688 1097 80 26 2386 3434 525743177 525744244 0.000000e+00 1085.0
9 TraesCS5A01G299200 chr5A 83.612 897 81 27 6118 6995 508168626 508169475 0.000000e+00 782.0
10 TraesCS5A01G299200 chr5A 81.497 708 110 14 7943 8638 510707429 510706731 6.380000e-156 562.0
11 TraesCS5A01G299200 chr5A 79.043 439 77 9 3361 3796 506649778 506650204 4.300000e-73 287.0
12 TraesCS5A01G299200 chr5A 86.692 263 22 9 1212 1466 526283112 526283369 7.200000e-71 279.0
13 TraesCS5A01G299200 chr5A 91.453 117 6 1 2258 2374 525745950 525746062 3.520000e-34 158.0
14 TraesCS5A01G299200 chr5A 90.598 117 7 1 2258 2374 525743085 525743197 1.640000e-32 152.0
15 TraesCS5A01G299200 chr5A 94.681 94 5 0 7719 7812 454323962 454323869 7.620000e-31 147.0
16 TraesCS5A01G299200 chr5A 91.837 49 4 0 9056 9104 3472691 3472643 1.700000e-07 69.4
17 TraesCS5A01G299200 chr5A 91.837 49 4 0 9056 9104 541373641 541373593 1.700000e-07 69.4
18 TraesCS5A01G299200 chr5A 90.476 42 4 0 8993 9034 511098876 511098835 1.000000e-03 56.5
19 TraesCS5A01G299200 chr5B 95.688 4661 130 24 2384 6993 482171923 482176563 0.000000e+00 7428.0
20 TraesCS5A01G299200 chr5B 88.013 2169 213 34 4859 6995 481865886 481868039 0.000000e+00 2521.0
21 TraesCS5A01G299200 chr5B 87.847 2164 220 24 4859 6995 481205083 481207230 0.000000e+00 2499.0
22 TraesCS5A01G299200 chr5B 87.506 2169 228 31 4859 6995 481858631 481860788 0.000000e+00 2464.0
23 TraesCS5A01G299200 chr5B 90.270 1480 107 13 13 1476 482170342 482171800 0.000000e+00 1901.0
24 TraesCS5A01G299200 chr5B 96.424 839 21 4 8214 9052 482177450 482178279 0.000000e+00 1375.0
25 TraesCS5A01G299200 chr5B 87.876 1097 70 23 2386 3434 498789633 498790714 0.000000e+00 1230.0
26 TraesCS5A01G299200 chr5B 86.462 1108 81 26 2376 3434 498786241 498787328 0.000000e+00 1151.0
27 TraesCS5A01G299200 chr5B 86.025 1102 78 29 2386 3434 498276749 498277827 0.000000e+00 1112.0
28 TraesCS5A01G299200 chr5B 86.251 1091 70 25 2388 3434 498712688 498713742 0.000000e+00 1110.0
29 TraesCS5A01G299200 chr5B 86.349 945 58 27 2560 3434 498534577 498535520 0.000000e+00 965.0
30 TraesCS5A01G299200 chr5B 87.327 797 82 13 6214 6995 481833963 481834755 0.000000e+00 894.0
31 TraesCS5A01G299200 chr5B 86.413 736 49 16 2386 3088 498792997 498793714 0.000000e+00 758.0
32 TraesCS5A01G299200 chr5B 98.201 389 7 0 7811 8199 482176994 482177382 0.000000e+00 680.0
33 TraesCS5A01G299200 chr5B 97.698 391 9 0 7338 7728 482176605 482176995 0.000000e+00 673.0
34 TraesCS5A01G299200 chr5B 91.066 347 21 3 3098 3434 498794047 498794393 2.390000e-125 460.0
35 TraesCS5A01G299200 chr5B 87.978 366 33 4 6640 6995 481863824 481864188 1.130000e-113 422.0
36 TraesCS5A01G299200 chr5B 90.169 295 28 1 3 297 482170166 482170459 5.330000e-102 383.0
37 TraesCS5A01G299200 chr5B 97.608 209 3 2 9119 9326 482178292 482178499 3.230000e-94 357.0
38 TraesCS5A01G299200 chr5B 86.667 270 21 7 1212 1471 498534124 498534388 1.550000e-72 285.0
39 TraesCS5A01G299200 chr5B 84.892 278 38 4 4699 4975 481053931 481054205 2.590000e-70 278.0
40 TraesCS5A01G299200 chr5B 83.704 270 30 8 1212 1471 498792649 498792914 9.440000e-60 243.0
41 TraesCS5A01G299200 chr5B 91.270 126 11 0 3 128 482170499 482170624 1.260000e-38 172.0
42 TraesCS5A01G299200 chr5B 92.661 109 4 1 2259 2367 498792906 498793010 4.550000e-33 154.0
43 TraesCS5A01G299200 chr5B 90.598 117 7 1 2258 2374 498276657 498276769 1.640000e-32 152.0
44 TraesCS5A01G299200 chr5B 95.699 93 4 0 2386 2478 498534471 498534563 5.890000e-32 150.0
45 TraesCS5A01G299200 chr5B 91.818 110 5 1 2258 2367 498789541 498789646 5.890000e-32 150.0
46 TraesCS5A01G299200 chr5B 92.000 100 6 2 7727 7826 386542040 386541943 1.270000e-28 139.0
47 TraesCS5A01G299200 chr5B 88.793 116 10 1 2259 2374 498786160 498786272 1.270000e-28 139.0
48 TraesCS5A01G299200 chr5B 96.250 80 3 0 9332 9411 482178544 482178623 2.130000e-26 132.0
49 TraesCS5A01G299200 chr5B 81.481 135 24 1 305 438 268305271 268305405 9.990000e-20 110.0
50 TraesCS5A01G299200 chr5B 89.796 49 4 1 8879 8926 477555780 477555732 2.840000e-05 62.1
51 TraesCS5A01G299200 chr5B 100.000 31 0 0 8183 8213 482177399 482177429 3.670000e-04 58.4
52 TraesCS5A01G299200 chr5B 92.308 39 3 0 248 286 232369827 232369865 1.000000e-03 56.5
53 TraesCS5A01G299200 chr5D 95.552 4654 138 24 2384 6995 402707390 402712016 0.000000e+00 7384.0
54 TraesCS5A01G299200 chr5D 89.931 2165 173 26 4859 6995 402431314 402433461 0.000000e+00 2748.0
55 TraesCS5A01G299200 chr5D 89.649 2164 189 23 4859 6995 402419740 402421895 0.000000e+00 2723.0
56 TraesCS5A01G299200 chr5D 89.658 2166 176 25 4859 6994 402334447 402336594 0.000000e+00 2715.0
57 TraesCS5A01G299200 chr5D 89.309 2170 193 20 4859 6995 402427431 402429594 0.000000e+00 2686.0
58 TraesCS5A01G299200 chr5D 89.033 2161 197 25 4859 6995 402452289 402454433 0.000000e+00 2641.0
59 TraesCS5A01G299200 chr5D 95.182 1536 43 4 7811 9326 402712444 402713968 0.000000e+00 2398.0
60 TraesCS5A01G299200 chr5D 95.604 1365 50 5 1 1362 402705336 402706693 0.000000e+00 2180.0
61 TraesCS5A01G299200 chr5D 88.696 1097 59 24 2386 3434 413602929 413604008 0.000000e+00 1279.0
62 TraesCS5A01G299200 chr5D 88.016 993 79 9 3 993 402698459 402699413 0.000000e+00 1138.0
63 TraesCS5A01G299200 chr5D 86.144 1097 80 28 2386 3434 413467143 413468215 0.000000e+00 1118.0
64 TraesCS5A01G299200 chr5D 87.283 920 86 13 6102 6995 402417140 402418054 0.000000e+00 1022.0
65 TraesCS5A01G299200 chr5D 87.763 809 42 23 2386 3153 413573335 413574127 0.000000e+00 893.0
66 TraesCS5A01G299200 chr5D 99.488 391 2 0 7338 7728 402712055 402712445 0.000000e+00 712.0
67 TraesCS5A01G299200 chr5D 79.211 938 146 28 7943 8842 402736606 402737532 2.910000e-169 606.0
68 TraesCS5A01G299200 chr5D 93.898 295 18 0 3 297 402698292 402698586 6.700000e-121 446.0
69 TraesCS5A01G299200 chr5D 92.203 295 22 1 3 297 402705172 402705465 5.260000e-112 416.0
70 TraesCS5A01G299200 chr5D 90.508 295 27 1 3 297 402698126 402698419 1.150000e-103 388.0
71 TraesCS5A01G299200 chr5D 87.778 270 19 4 1212 1471 413584578 413584843 4.270000e-78 303.0
72 TraesCS5A01G299200 chr5D 87.037 270 21 8 1212 1471 413572986 413573251 9.240000e-75 292.0
73 TraesCS5A01G299200 chr5D 85.656 244 27 1 6760 6995 402360159 402360402 5.640000e-62 250.0
74 TraesCS5A01G299200 chr5D 95.312 128 6 0 3 130 402698626 402698753 4.460000e-48 204.0
75 TraesCS5A01G299200 chr5D 93.750 112 7 0 2386 2497 413584926 413585037 1.630000e-37 169.0
76 TraesCS5A01G299200 chr5D 93.162 117 5 1 2258 2374 413602836 413602949 1.630000e-37 169.0
77 TraesCS5A01G299200 chr5D 92.308 117 5 1 2258 2374 413584834 413584946 7.560000e-36 163.0
78 TraesCS5A01G299200 chr5D 91.453 117 6 1 2258 2374 413467051 413467163 3.520000e-34 158.0
79 TraesCS5A01G299200 chr5D 91.262 103 7 2 7712 7813 477403428 477403327 1.270000e-28 139.0
80 TraesCS5A01G299200 chr5D 89.091 110 11 1 7703 7812 255246721 255246829 1.650000e-27 135.0
81 TraesCS5A01G299200 chr5D 96.250 80 3 0 9332 9411 402714013 402714092 2.130000e-26 132.0
82 TraesCS5A01G299200 chr5D 90.476 42 4 0 8993 9034 402734939 402734980 1.000000e-03 56.5
83 TraesCS5A01G299200 chr6D 83.059 3400 383 88 3010 6283 75275517 75278849 0.000000e+00 2909.0
84 TraesCS5A01G299200 chr6D 94.681 94 5 0 7719 7812 456816200 456816293 7.620000e-31 147.0
85 TraesCS5A01G299200 chr6D 81.944 144 14 7 2101 2235 464342406 464342546 2.780000e-20 111.0
86 TraesCS5A01G299200 chr6D 84.932 73 5 2 1543 1615 467313053 467312987 1.700000e-07 69.4
87 TraesCS5A01G299200 chr6B 84.113 2927 330 62 3197 6036 149012196 149015074 0.000000e+00 2704.0
88 TraesCS5A01G299200 chr6B 81.633 147 19 4 2093 2235 708038628 708038770 2.150000e-21 115.0
89 TraesCS5A01G299200 chr6B 79.518 166 23 6 2078 2238 712662364 712662205 3.590000e-19 108.0
90 TraesCS5A01G299200 chr6B 100.000 32 0 0 1543 1574 712665930 712665899 1.020000e-04 60.2
91 TraesCS5A01G299200 chr6A 82.890 3156 348 97 3302 6342 91374966 91378044 0.000000e+00 2660.0
92 TraesCS5A01G299200 chr6A 87.129 404 38 6 7338 7727 91379493 91379896 6.700000e-121 446.0
93 TraesCS5A01G299200 chr6A 82.903 503 31 21 1611 2076 613764556 613764072 1.470000e-107 401.0
94 TraesCS5A01G299200 chr6A 84.694 98 8 4 1544 1634 613766761 613766664 3.620000e-14 91.6
95 TraesCS5A01G299200 chr7D 83.687 895 84 39 7811 8663 101393345 101394219 0.000000e+00 787.0
96 TraesCS5A01G299200 chr7D 93.862 391 24 0 7338 7728 101392956 101393346 2.930000e-164 590.0
97 TraesCS5A01G299200 chr7A 87.992 533 53 9 8152 8677 105932437 105932965 3.730000e-173 619.0
98 TraesCS5A01G299200 chr7A 93.095 391 27 0 7338 7728 105929973 105930363 2.950000e-159 573.0
99 TraesCS5A01G299200 chr7A 86.029 544 53 16 8152 8677 91020349 91020887 6.380000e-156 562.0
100 TraesCS5A01G299200 chr7A 91.392 395 33 1 7338 7731 91019621 91020015 2.990000e-149 540.0
101 TraesCS5A01G299200 chr7A 87.090 457 32 15 8152 8585 104801092 104801544 8.490000e-135 492.0
102 TraesCS5A01G299200 chr7A 83.235 340 27 14 7811 8120 104800753 104801092 1.550000e-72 285.0
103 TraesCS5A01G299200 chr7A 88.938 226 20 5 7889 8109 91020113 91020338 3.350000e-69 274.0
104 TraesCS5A01G299200 chr7A 92.381 105 4 4 7719 7820 462975512 462975615 7.620000e-31 147.0
105 TraesCS5A01G299200 chrUn 86.188 543 49 18 8152 8673 91483560 91483023 1.770000e-156 564.0
106 TraesCS5A01G299200 chrUn 91.816 391 32 0 7338 7728 91484288 91483898 6.430000e-151 545.0
107 TraesCS5A01G299200 chrUn 83.030 330 26 14 7811 8110 91483899 91483570 1.200000e-68 272.0
108 TraesCS5A01G299200 chr7B 89.485 447 39 5 8222 8662 57914341 57914785 8.250000e-155 558.0
109 TraesCS5A01G299200 chr7B 92.010 388 30 1 7338 7725 58243829 58244215 2.310000e-150 544.0
110 TraesCS5A01G299200 chr7B 88.121 463 45 8 8222 8677 58244676 58245135 8.310000e-150 542.0
111 TraesCS5A01G299200 chr7B 90.464 388 36 1 7338 7725 57913523 57913909 2.340000e-140 510.0
112 TraesCS5A01G299200 chr7B 86.053 337 20 11 7811 8120 58244217 58244553 4.210000e-88 337.0
113 TraesCS5A01G299200 chr7B 84.273 337 25 13 7811 8120 57913911 57914246 4.270000e-78 303.0
114 TraesCS5A01G299200 chr1D 94.681 94 5 0 7719 7812 198934913 198935006 7.620000e-31 147.0
115 TraesCS5A01G299200 chr1D 92.000 50 3 1 9060 9109 366687152 366687104 1.700000e-07 69.4
116 TraesCS5A01G299200 chr4B 88.496 113 11 2 7706 7818 500868131 500868021 1.650000e-27 135.0
117 TraesCS5A01G299200 chr4B 95.000 40 2 0 257 296 488039511 488039472 7.890000e-06 63.9
118 TraesCS5A01G299200 chr3D 89.720 107 9 2 7709 7813 609371461 609371567 1.650000e-27 135.0
119 TraesCS5A01G299200 chr2B 95.161 62 3 0 9184 9245 743205892 743205831 2.160000e-16 99.0
120 TraesCS5A01G299200 chr2B 93.651 63 4 0 9183 9245 743202389 743202327 2.800000e-15 95.3
121 TraesCS5A01G299200 chr2B 97.674 43 1 0 9060 9102 716814579 716814537 3.640000e-09 75.0
122 TraesCS5A01G299200 chr2B 93.750 48 3 0 9057 9104 396250866 396250913 1.310000e-08 73.1
123 TraesCS5A01G299200 chr2B 93.617 47 3 0 9056 9102 89311938 89311892 4.710000e-08 71.3
124 TraesCS5A01G299200 chr2B 92.857 42 3 0 8993 9034 743202489 743202448 2.840000e-05 62.1
125 TraesCS5A01G299200 chr3A 91.379 58 4 1 8909 8966 375772973 375772917 2.820000e-10 78.7
126 TraesCS5A01G299200 chr2D 79.646 113 17 4 8879 8990 154187141 154187248 1.010000e-09 76.8
127 TraesCS5A01G299200 chr2A 93.750 48 3 0 9051 9098 522506858 522506905 1.310000e-08 73.1
128 TraesCS5A01G299200 chr2A 93.478 46 3 0 9056 9101 31016574 31016529 1.700000e-07 69.4
129 TraesCS5A01G299200 chr2A 92.857 42 3 0 8993 9034 741014211 741014170 2.840000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G299200 chr5A 508611663 508621073 9410 False 8374.500000 12918 100.000000 1 9411 2 chr5A.!!$F6 9410
1 TraesCS5A01G299200 chr5A 508217642 508219785 2143 False 2553.000000 2553 88.333000 4859 6991 1 chr5A.!!$F3 2132
2 TraesCS5A01G299200 chr5A 508551961 508553155 1194 False 1736.000000 1736 93.052000 3 1192 1 chr5A.!!$F5 1189
3 TraesCS5A01G299200 chr5A 508528092 508529195 1103 False 1607.000000 1607 93.100000 1 1098 1 chr5A.!!$F4 1097
4 TraesCS5A01G299200 chr5A 508168626 508169475 849 False 782.000000 782 83.612000 6118 6995 1 chr5A.!!$F2 877
5 TraesCS5A01G299200 chr5A 526283112 526284541 1429 False 758.500000 1238 87.335000 1212 3434 2 chr5A.!!$F8 2222
6 TraesCS5A01G299200 chr5A 525743085 525749975 6890 False 718.800000 1103 87.911800 2258 3434 5 chr5A.!!$F7 1176
7 TraesCS5A01G299200 chr5A 510706731 510707429 698 True 562.000000 562 81.497000 7943 8638 1 chr5A.!!$R3 695
8 TraesCS5A01G299200 chr5B 481205083 481207230 2147 False 2499.000000 2499 87.847000 4859 6995 1 chr5B.!!$F4 2136
9 TraesCS5A01G299200 chr5B 481858631 481868039 9408 False 1802.333333 2521 87.832333 4859 6995 3 chr5B.!!$F7 2136
10 TraesCS5A01G299200 chr5B 482170166 482178623 8457 False 1315.940000 7428 95.357800 3 9411 10 chr5B.!!$F8 9408
11 TraesCS5A01G299200 chr5B 498712688 498713742 1054 False 1110.000000 1110 86.251000 2388 3434 1 chr5B.!!$F6 1046
12 TraesCS5A01G299200 chr5B 481833963 481834755 792 False 894.000000 894 87.327000 6214 6995 1 chr5B.!!$F5 781
13 TraesCS5A01G299200 chr5B 498276657 498277827 1170 False 632.000000 1112 88.311500 2258 3434 2 chr5B.!!$F9 1176
14 TraesCS5A01G299200 chr5B 498786160 498794393 8233 False 535.625000 1230 88.599125 1212 3434 8 chr5B.!!$F11 2222
15 TraesCS5A01G299200 chr5B 498534124 498535520 1396 False 466.666667 965 89.571667 1212 3434 3 chr5B.!!$F10 2222
16 TraesCS5A01G299200 chr5D 402427431 402433461 6030 False 2717.000000 2748 89.620000 4859 6995 2 chr5D.!!$F6 2136
17 TraesCS5A01G299200 chr5D 402334447 402336594 2147 False 2715.000000 2715 89.658000 4859 6994 1 chr5D.!!$F2 2135
18 TraesCS5A01G299200 chr5D 402452289 402454433 2144 False 2641.000000 2641 89.033000 4859 6995 1 chr5D.!!$F4 2136
19 TraesCS5A01G299200 chr5D 402705172 402714092 8920 False 2203.666667 7384 95.713167 1 9411 6 chr5D.!!$F8 9410
20 TraesCS5A01G299200 chr5D 402417140 402421895 4755 False 1872.500000 2723 88.466000 4859 6995 2 chr5D.!!$F5 2136
21 TraesCS5A01G299200 chr5D 413602836 413604008 1172 False 724.000000 1279 90.929000 2258 3434 2 chr5D.!!$F13 1176
22 TraesCS5A01G299200 chr5D 413467051 413468215 1164 False 638.000000 1118 88.798500 2258 3434 2 chr5D.!!$F10 1176
23 TraesCS5A01G299200 chr5D 413572986 413574127 1141 False 592.500000 893 87.400000 1212 3153 2 chr5D.!!$F11 1941
24 TraesCS5A01G299200 chr5D 402698126 402699413 1287 False 544.000000 1138 91.933500 3 993 4 chr5D.!!$F7 990
25 TraesCS5A01G299200 chr5D 402734939 402737532 2593 False 331.250000 606 84.843500 7943 9034 2 chr5D.!!$F9 1091
26 TraesCS5A01G299200 chr6D 75275517 75278849 3332 False 2909.000000 2909 83.059000 3010 6283 1 chr6D.!!$F1 3273
27 TraesCS5A01G299200 chr6B 149012196 149015074 2878 False 2704.000000 2704 84.113000 3197 6036 1 chr6B.!!$F1 2839
28 TraesCS5A01G299200 chr6A 91374966 91379896 4930 False 1553.000000 2660 85.009500 3302 7727 2 chr6A.!!$F1 4425
29 TraesCS5A01G299200 chr6A 613764072 613766761 2689 True 246.300000 401 83.798500 1544 2076 2 chr6A.!!$R1 532
30 TraesCS5A01G299200 chr7D 101392956 101394219 1263 False 688.500000 787 88.774500 7338 8663 2 chr7D.!!$F1 1325
31 TraesCS5A01G299200 chr7A 105929973 105932965 2992 False 596.000000 619 90.543500 7338 8677 2 chr7A.!!$F4 1339
32 TraesCS5A01G299200 chr7A 91019621 91020887 1266 False 458.666667 562 88.786333 7338 8677 3 chr7A.!!$F2 1339
33 TraesCS5A01G299200 chr7A 104800753 104801544 791 False 388.500000 492 85.162500 7811 8585 2 chr7A.!!$F3 774
34 TraesCS5A01G299200 chrUn 91483023 91484288 1265 True 460.333333 564 87.011333 7338 8673 3 chrUn.!!$R1 1335
35 TraesCS5A01G299200 chr7B 58243829 58245135 1306 False 474.333333 544 88.728000 7338 8677 3 chr7B.!!$F2 1339
36 TraesCS5A01G299200 chr7B 57913523 57914785 1262 False 457.000000 558 88.074000 7338 8662 3 chr7B.!!$F1 1324

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
449 949 1.159285 CAAGGATCAGAAGCGTGCAA 58.841 50.000 0.00 0.00 0.00 4.08 F
1349 1896 0.107017 CCTGATTTCCGGTGGATGCT 60.107 55.000 0.00 0.00 0.00 3.79 F
1394 1941 0.032130 CCGTACCATGTCCTCATCGG 59.968 60.000 0.00 0.00 33.64 4.18 F
1454 2001 0.032515 TAGGGGATCTCTGCGTCCAA 60.033 55.000 0.00 0.00 36.19 3.53 F
2193 4914 0.318441 GTCACCTCTACACTGCTGCA 59.682 55.000 0.88 0.88 0.00 4.41 F
2194 4915 1.066573 GTCACCTCTACACTGCTGCAT 60.067 52.381 1.31 0.00 0.00 3.96 F
3634 19811 0.109272 GATCGCTGGACAACTCGACA 60.109 55.000 0.00 0.00 33.59 4.35 F
4818 21015 2.354902 GCCAACCATGAAAGGCAGT 58.645 52.632 14.75 0.00 46.26 4.40 F
6531 30983 1.553690 AAGGCGGCACCACTGAGTAT 61.554 55.000 13.08 0.00 43.14 2.12 F
6979 31461 0.521735 GTCGGAACTGTGGCCAATTC 59.478 55.000 7.24 12.17 0.00 2.17 F
7755 32251 2.091588 CCGTTCCAAATTACTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1375 1922 0.032130 CCGATGAGGACATGGTACGG 59.968 60.000 0.00 0.00 45.00 4.02 R
2174 4895 0.318441 TGCAGCAGTGTAGAGGTGAC 59.682 55.000 0.00 0.00 35.37 3.67 R
2762 15191 0.734889 CTGCGGGATTAGCAACCAAG 59.265 55.000 0.00 0.00 44.67 3.61 R
2807 15236 1.204941 AGAGCGAAAACGGCTGATACT 59.795 47.619 0.00 0.00 41.72 2.12 R
3634 19811 2.839486 TCTGGAGAATGTTTGCTCGT 57.161 45.000 0.00 0.00 31.95 4.18 R
4292 20485 2.656947 AAAGCAAGGCAGAGGTACAA 57.343 45.000 0.00 0.00 0.00 2.41 R
5533 25683 1.770085 GCGGCTGCAGCTTCTGTATC 61.770 60.000 35.82 16.98 42.15 2.24 R
6832 31305 1.600636 ATGCCCACAGTGTTGACCG 60.601 57.895 0.00 0.00 0.00 4.79 R
7733 32229 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69 R
7780 32276 3.389925 TTCCAAATTACTCGTCGTGGT 57.610 42.857 0.00 0.00 0.00 4.16 R
9098 35486 2.232941 CGGTGCTCACTACTCCCTAAAA 59.767 50.000 0.00 0.00 0.00 1.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
187 686 8.391106 AGCGATATTTTTCATGTGTAGAAGAAC 58.609 33.333 0.00 0.00 0.00 3.01
200 699 6.070481 TGTGTAGAAGAACCAGGTGCAATATA 60.070 38.462 0.00 0.00 0.00 0.86
424 924 3.342377 TGATATCACGCCACCAAAAGA 57.658 42.857 0.00 0.00 0.00 2.52
449 949 1.159285 CAAGGATCAGAAGCGTGCAA 58.841 50.000 0.00 0.00 0.00 4.08
517 1017 1.597663 GAATCCGGTGTATGCGGAAAG 59.402 52.381 0.00 0.00 35.31 2.62
665 1166 8.892723 TCCAATTTTAGTGTGCTGTTATCTATG 58.107 33.333 0.00 0.00 0.00 2.23
909 1436 4.435970 CAGCCAGCCATCCAGCCA 62.436 66.667 0.00 0.00 0.00 4.75
910 1437 3.426836 AGCCAGCCATCCAGCCAT 61.427 61.111 0.00 0.00 0.00 4.40
1342 1889 3.739613 GGGGGCCTGATTTCCGGT 61.740 66.667 0.84 0.00 0.00 5.28
1343 1890 2.440247 GGGGCCTGATTTCCGGTG 60.440 66.667 0.84 0.00 0.00 4.94
1344 1891 2.440247 GGGCCTGATTTCCGGTGG 60.440 66.667 0.84 0.00 0.00 4.61
1345 1892 2.674754 GGCCTGATTTCCGGTGGA 59.325 61.111 0.00 0.00 0.00 4.02
1346 1893 1.227383 GGCCTGATTTCCGGTGGAT 59.773 57.895 0.00 0.00 0.00 3.41
1347 1894 1.103398 GGCCTGATTTCCGGTGGATG 61.103 60.000 0.00 0.00 0.00 3.51
1348 1895 1.728490 GCCTGATTTCCGGTGGATGC 61.728 60.000 0.00 0.00 0.00 3.91
1349 1896 0.107017 CCTGATTTCCGGTGGATGCT 60.107 55.000 0.00 0.00 0.00 3.79
1350 1897 1.683011 CCTGATTTCCGGTGGATGCTT 60.683 52.381 0.00 0.00 0.00 3.91
1351 1898 1.402968 CTGATTTCCGGTGGATGCTTG 59.597 52.381 0.00 0.00 0.00 4.01
1352 1899 0.740737 GATTTCCGGTGGATGCTTGG 59.259 55.000 0.00 0.00 0.00 3.61
1353 1900 0.684153 ATTTCCGGTGGATGCTTGGG 60.684 55.000 0.00 0.00 0.00 4.12
1354 1901 1.784301 TTTCCGGTGGATGCTTGGGA 61.784 55.000 0.00 0.00 0.00 4.37
1355 1902 1.784301 TTCCGGTGGATGCTTGGGAA 61.784 55.000 0.00 0.70 0.00 3.97
1356 1903 1.076777 CCGGTGGATGCTTGGGAAT 60.077 57.895 0.00 0.00 0.00 3.01
1357 1904 0.684153 CCGGTGGATGCTTGGGAATT 60.684 55.000 0.00 0.00 0.00 2.17
1358 1905 0.457035 CGGTGGATGCTTGGGAATTG 59.543 55.000 0.00 0.00 0.00 2.32
1359 1906 1.560505 GGTGGATGCTTGGGAATTGT 58.439 50.000 0.00 0.00 0.00 2.71
1360 1907 1.205417 GGTGGATGCTTGGGAATTGTG 59.795 52.381 0.00 0.00 0.00 3.33
1361 1908 2.170166 GTGGATGCTTGGGAATTGTGA 58.830 47.619 0.00 0.00 0.00 3.58
1362 1909 2.562298 GTGGATGCTTGGGAATTGTGAA 59.438 45.455 0.00 0.00 0.00 3.18
1363 1910 2.827322 TGGATGCTTGGGAATTGTGAAG 59.173 45.455 0.00 0.00 0.00 3.02
1364 1911 2.167075 GGATGCTTGGGAATTGTGAAGG 59.833 50.000 0.00 0.00 0.00 3.46
1365 1912 2.380064 TGCTTGGGAATTGTGAAGGT 57.620 45.000 0.00 0.00 0.00 3.50
1366 1913 2.676748 TGCTTGGGAATTGTGAAGGTT 58.323 42.857 0.00 0.00 0.00 3.50
1367 1914 2.364970 TGCTTGGGAATTGTGAAGGTTG 59.635 45.455 0.00 0.00 0.00 3.77
1368 1915 2.365293 GCTTGGGAATTGTGAAGGTTGT 59.635 45.455 0.00 0.00 0.00 3.32
1369 1916 3.799917 GCTTGGGAATTGTGAAGGTTGTG 60.800 47.826 0.00 0.00 0.00 3.33
1370 1917 2.315176 TGGGAATTGTGAAGGTTGTGG 58.685 47.619 0.00 0.00 0.00 4.17
1371 1918 2.316108 GGGAATTGTGAAGGTTGTGGT 58.684 47.619 0.00 0.00 0.00 4.16
1372 1919 2.035832 GGGAATTGTGAAGGTTGTGGTG 59.964 50.000 0.00 0.00 0.00 4.17
1373 1920 2.693074 GGAATTGTGAAGGTTGTGGTGT 59.307 45.455 0.00 0.00 0.00 4.16
1374 1921 3.490761 GGAATTGTGAAGGTTGTGGTGTG 60.491 47.826 0.00 0.00 0.00 3.82
1375 1922 0.814457 TTGTGAAGGTTGTGGTGTGC 59.186 50.000 0.00 0.00 0.00 4.57
1376 1923 1.034838 TGTGAAGGTTGTGGTGTGCC 61.035 55.000 0.00 0.00 0.00 5.01
1377 1924 1.821759 TGAAGGTTGTGGTGTGCCG 60.822 57.895 0.00 0.00 37.67 5.69
1378 1925 1.822186 GAAGGTTGTGGTGTGCCGT 60.822 57.895 0.00 0.00 37.67 5.68
1379 1926 0.533308 GAAGGTTGTGGTGTGCCGTA 60.533 55.000 0.00 0.00 37.67 4.02
1380 1927 0.816421 AAGGTTGTGGTGTGCCGTAC 60.816 55.000 0.00 0.00 37.67 3.67
1381 1928 2.255881 GGTTGTGGTGTGCCGTACC 61.256 63.158 0.00 0.00 37.67 3.34
1382 1929 1.524165 GTTGTGGTGTGCCGTACCA 60.524 57.895 0.00 0.00 45.52 3.25
1385 1932 3.152865 TGGTGTGCCGTACCATGT 58.847 55.556 0.00 0.00 43.00 3.21
1386 1933 1.004320 TGGTGTGCCGTACCATGTC 60.004 57.895 0.00 0.00 43.00 3.06
1387 1934 1.743995 GGTGTGCCGTACCATGTCC 60.744 63.158 0.00 0.00 38.12 4.02
1388 1935 1.295423 GTGTGCCGTACCATGTCCT 59.705 57.895 0.00 0.00 0.00 3.85
1389 1936 0.739813 GTGTGCCGTACCATGTCCTC 60.740 60.000 0.00 0.00 0.00 3.71
1390 1937 1.188871 TGTGCCGTACCATGTCCTCA 61.189 55.000 0.00 0.00 0.00 3.86
1391 1938 0.178068 GTGCCGTACCATGTCCTCAT 59.822 55.000 0.00 0.00 34.21 2.90
1392 1939 0.464036 TGCCGTACCATGTCCTCATC 59.536 55.000 0.00 0.00 31.15 2.92
1393 1940 0.597637 GCCGTACCATGTCCTCATCG 60.598 60.000 0.00 0.00 31.15 3.84
1394 1941 0.032130 CCGTACCATGTCCTCATCGG 59.968 60.000 0.00 0.00 33.64 4.18
1395 1942 0.744874 CGTACCATGTCCTCATCGGT 59.255 55.000 0.00 0.00 38.26 4.69
1396 1943 1.536072 CGTACCATGTCCTCATCGGTG 60.536 57.143 0.00 0.00 36.70 4.94
1397 1944 1.119684 TACCATGTCCTCATCGGTGG 58.880 55.000 0.00 0.00 36.70 4.61
1398 1945 1.524621 CCATGTCCTCATCGGTGGC 60.525 63.158 0.00 0.00 31.15 5.01
1399 1946 1.884464 CATGTCCTCATCGGTGGCG 60.884 63.158 0.00 0.00 31.15 5.69
1400 1947 3.094062 ATGTCCTCATCGGTGGCGG 62.094 63.158 0.00 0.00 0.00 6.13
1401 1948 4.530857 GTCCTCATCGGTGGCGGG 62.531 72.222 0.00 0.00 0.00 6.13
1403 1950 4.838152 CCTCATCGGTGGCGGGTG 62.838 72.222 0.00 0.00 0.00 4.61
1433 1980 3.973516 CGCCGCCCGTAGCAGATA 61.974 66.667 0.00 0.00 44.04 1.98
1434 1981 2.049063 GCCGCCCGTAGCAGATAG 60.049 66.667 0.00 0.00 44.04 2.08
1435 1982 2.857744 GCCGCCCGTAGCAGATAGT 61.858 63.158 0.00 0.00 44.04 2.12
1436 1983 1.521450 GCCGCCCGTAGCAGATAGTA 61.521 60.000 0.00 0.00 44.04 1.82
1437 1984 0.522180 CCGCCCGTAGCAGATAGTAG 59.478 60.000 0.00 0.00 44.04 2.57
1438 1985 0.522180 CGCCCGTAGCAGATAGTAGG 59.478 60.000 0.00 0.00 44.04 3.18
1439 1986 0.889306 GCCCGTAGCAGATAGTAGGG 59.111 60.000 0.00 0.00 42.97 3.53
1440 1987 1.546961 CCCGTAGCAGATAGTAGGGG 58.453 60.000 0.00 0.00 37.85 4.79
1441 1988 1.075050 CCCGTAGCAGATAGTAGGGGA 59.925 57.143 1.58 0.00 44.13 4.81
1442 1989 2.291670 CCCGTAGCAGATAGTAGGGGAT 60.292 54.545 1.58 0.00 44.13 3.85
1443 1990 3.018149 CCGTAGCAGATAGTAGGGGATC 58.982 54.545 0.00 0.00 0.00 3.36
1444 1991 3.308545 CCGTAGCAGATAGTAGGGGATCT 60.309 52.174 0.00 0.00 32.48 2.75
1445 1992 3.942748 CGTAGCAGATAGTAGGGGATCTC 59.057 52.174 0.00 0.00 29.73 2.75
1446 1993 4.323945 CGTAGCAGATAGTAGGGGATCTCT 60.324 50.000 0.00 0.00 29.73 3.10
1447 1994 4.046286 AGCAGATAGTAGGGGATCTCTG 57.954 50.000 0.00 0.00 34.61 3.35
1448 1995 2.495669 GCAGATAGTAGGGGATCTCTGC 59.504 54.545 11.95 11.95 45.90 4.26
1449 1996 2.752354 CAGATAGTAGGGGATCTCTGCG 59.248 54.545 0.00 0.00 29.73 5.18
1450 1997 2.377193 AGATAGTAGGGGATCTCTGCGT 59.623 50.000 0.00 0.00 0.00 5.24
1451 1998 2.273538 TAGTAGGGGATCTCTGCGTC 57.726 55.000 0.00 0.00 0.00 5.19
1452 1999 0.468400 AGTAGGGGATCTCTGCGTCC 60.468 60.000 0.00 0.00 0.00 4.79
1453 2000 0.755698 GTAGGGGATCTCTGCGTCCA 60.756 60.000 0.00 0.00 36.19 4.02
1454 2001 0.032515 TAGGGGATCTCTGCGTCCAA 60.033 55.000 0.00 0.00 36.19 3.53
1455 2002 1.153349 GGGGATCTCTGCGTCCAAC 60.153 63.158 0.00 0.00 36.19 3.77
1456 2003 1.153349 GGGATCTCTGCGTCCAACC 60.153 63.158 0.00 0.00 36.19 3.77
1457 2004 1.519455 GGATCTCTGCGTCCAACCG 60.519 63.158 0.00 0.00 34.57 4.44
1481 2028 2.436646 CGCGAGGGAATTGGCAGT 60.437 61.111 0.00 0.00 0.00 4.40
1482 2029 2.753966 CGCGAGGGAATTGGCAGTG 61.754 63.158 0.00 0.00 0.00 3.66
1483 2030 3.056313 GCGAGGGAATTGGCAGTGC 62.056 63.158 6.55 6.55 0.00 4.40
1484 2031 1.675310 CGAGGGAATTGGCAGTGCA 60.675 57.895 18.61 0.00 0.00 4.57
1485 2032 1.651240 CGAGGGAATTGGCAGTGCAG 61.651 60.000 18.61 0.00 0.00 4.41
1486 2033 1.304713 AGGGAATTGGCAGTGCAGG 60.305 57.895 18.61 0.00 0.00 4.85
1487 2034 2.353610 GGGAATTGGCAGTGCAGGG 61.354 63.158 18.61 0.00 0.00 4.45
1488 2035 2.353610 GGAATTGGCAGTGCAGGGG 61.354 63.158 18.61 0.00 0.00 4.79
1489 2036 2.284112 AATTGGCAGTGCAGGGGG 60.284 61.111 18.61 0.00 0.00 5.40
1495 2042 4.729918 CAGTGCAGGGGGCCTCAC 62.730 72.222 5.99 8.35 43.89 3.51
1519 2066 2.507324 GCCGACGCCTGTCTTCTC 60.507 66.667 0.00 0.00 43.21 2.87
1520 2067 2.182030 CCGACGCCTGTCTTCTCC 59.818 66.667 0.00 0.00 43.21 3.71
1521 2068 2.344203 CCGACGCCTGTCTTCTCCT 61.344 63.158 0.00 0.00 43.21 3.69
1522 2069 1.153939 CGACGCCTGTCTTCTCCTG 60.154 63.158 0.00 0.00 43.21 3.86
1523 2070 1.446966 GACGCCTGTCTTCTCCTGC 60.447 63.158 0.00 0.00 42.08 4.85
1524 2071 2.125350 CGCCTGTCTTCTCCTGCC 60.125 66.667 0.00 0.00 0.00 4.85
1525 2072 2.654079 CGCCTGTCTTCTCCTGCCT 61.654 63.158 0.00 0.00 0.00 4.75
1526 2073 1.220477 GCCTGTCTTCTCCTGCCTC 59.780 63.158 0.00 0.00 0.00 4.70
1527 2074 1.904032 CCTGTCTTCTCCTGCCTCC 59.096 63.158 0.00 0.00 0.00 4.30
1528 2075 1.621672 CCTGTCTTCTCCTGCCTCCC 61.622 65.000 0.00 0.00 0.00 4.30
1529 2076 1.954362 CTGTCTTCTCCTGCCTCCCG 61.954 65.000 0.00 0.00 0.00 5.14
1530 2077 3.077556 TCTTCTCCTGCCTCCCGC 61.078 66.667 0.00 0.00 38.31 6.13
1531 2078 4.168291 CTTCTCCTGCCTCCCGCC 62.168 72.222 0.00 0.00 36.24 6.13
1565 2112 4.670735 CGACTCACTCGTTTTGTTTGGTTT 60.671 41.667 0.00 0.00 37.64 3.27
1566 2113 5.128992 ACTCACTCGTTTTGTTTGGTTTT 57.871 34.783 0.00 0.00 0.00 2.43
1567 2114 5.158494 ACTCACTCGTTTTGTTTGGTTTTC 58.842 37.500 0.00 0.00 0.00 2.29
1569 2116 5.395642 TCACTCGTTTTGTTTGGTTTTCTC 58.604 37.500 0.00 0.00 0.00 2.87
1570 2117 4.561213 CACTCGTTTTGTTTGGTTTTCTCC 59.439 41.667 0.00 0.00 0.00 3.71
1574 2121 4.142249 CGTTTTGTTTGGTTTTCTCCCTCT 60.142 41.667 0.00 0.00 0.00 3.69
1575 2122 5.109210 GTTTTGTTTGGTTTTCTCCCTCTG 58.891 41.667 0.00 0.00 0.00 3.35
1576 2123 3.662759 TGTTTGGTTTTCTCCCTCTGT 57.337 42.857 0.00 0.00 0.00 3.41
1577 2124 3.976015 TGTTTGGTTTTCTCCCTCTGTT 58.024 40.909 0.00 0.00 0.00 3.16
1579 2126 4.775253 TGTTTGGTTTTCTCCCTCTGTTTT 59.225 37.500 0.00 0.00 0.00 2.43
1645 4330 1.004918 GGGTTCACCAGACCAGTCG 60.005 63.158 0.00 0.00 39.85 4.18
1701 4390 6.174049 GCCCAAGAACTTTCTTCATAGTAGT 58.826 40.000 1.04 0.00 45.23 2.73
1703 4392 7.822822 GCCCAAGAACTTTCTTCATAGTAGTAA 59.177 37.037 1.04 0.00 45.23 2.24
1704 4393 9.720769 CCCAAGAACTTTCTTCATAGTAGTAAA 57.279 33.333 1.04 0.00 45.23 2.01
1715 4404 9.174166 TCTTCATAGTAGTAAAAATTTCTGGCC 57.826 33.333 0.00 0.00 0.00 5.36
1716 4405 7.548196 TCATAGTAGTAAAAATTTCTGGCCG 57.452 36.000 0.00 0.00 0.00 6.13
1717 4406 7.332557 TCATAGTAGTAAAAATTTCTGGCCGA 58.667 34.615 0.00 0.00 0.00 5.54
1752 4441 2.162716 GCGACTGCTTTCGTTCCAT 58.837 52.632 8.92 0.00 41.26 3.41
1757 4446 4.671766 GCGACTGCTTTCGTTCCATTTTAT 60.672 41.667 8.92 0.00 41.26 1.40
1782 4471 4.435970 TCAGGTAGGCGAGGGCGA 62.436 66.667 0.00 0.00 41.24 5.54
1783 4472 3.905678 CAGGTAGGCGAGGGCGAG 61.906 72.222 0.00 0.00 41.24 5.03
1795 4484 2.709475 GGCGAGCCTGCATTAACG 59.291 61.111 6.90 0.00 36.28 3.18
1801 4490 1.468520 GAGCCTGCATTAACGCTCAAA 59.531 47.619 12.33 0.00 45.64 2.69
1802 4491 1.200020 AGCCTGCATTAACGCTCAAAC 59.800 47.619 0.00 0.00 0.00 2.93
1803 4492 1.200020 GCCTGCATTAACGCTCAAACT 59.800 47.619 0.00 0.00 0.00 2.66
1804 4493 2.351738 GCCTGCATTAACGCTCAAACTT 60.352 45.455 0.00 0.00 0.00 2.66
1805 4494 3.492313 CCTGCATTAACGCTCAAACTTC 58.508 45.455 0.00 0.00 0.00 3.01
1806 4495 3.058293 CCTGCATTAACGCTCAAACTTCA 60.058 43.478 0.00 0.00 0.00 3.02
1867 4561 1.683943 CATCACCATCATCCACCCAC 58.316 55.000 0.00 0.00 0.00 4.61
1950 4644 1.002888 CACTGCAGACATGTTCTCCCT 59.997 52.381 23.35 0.00 28.96 4.20
1966 4671 2.436646 CTGTTCCCGCGCCAGATT 60.437 61.111 0.00 0.00 0.00 2.40
1971 4676 1.971505 TTCCCGCGCCAGATTGAGAT 61.972 55.000 0.00 0.00 0.00 2.75
1973 4678 1.227350 CCGCGCCAGATTGAGATCA 60.227 57.895 0.00 0.00 34.60 2.92
1974 4679 0.811219 CCGCGCCAGATTGAGATCAA 60.811 55.000 0.00 0.00 40.51 2.57
1976 4681 0.942962 GCGCCAGATTGAGATCAAGG 59.057 55.000 0.00 0.00 39.47 3.61
1978 4683 1.139654 CGCCAGATTGAGATCAAGGGA 59.860 52.381 12.35 0.00 39.47 4.20
2003 4720 5.245531 TGGATCTACCAACAACATTGAGAC 58.754 41.667 0.00 0.00 46.75 3.36
2006 4723 2.746279 ACCAACAACATTGAGACCCA 57.254 45.000 0.00 0.00 0.00 4.51
2010 4727 2.958355 CAACAACATTGAGACCCAACCT 59.042 45.455 0.00 0.00 37.63 3.50
2072 4793 3.488778 TTCGGGCAAGGTTTACAGTAA 57.511 42.857 0.00 0.00 0.00 2.24
2076 4797 3.503827 GGCAAGGTTTACAGTAATGCC 57.496 47.619 16.44 16.44 44.24 4.40
2077 4798 2.159435 GGCAAGGTTTACAGTAATGCCG 60.159 50.000 16.44 3.64 41.97 5.69
2078 4799 2.159435 GCAAGGTTTACAGTAATGCCGG 60.159 50.000 0.00 0.00 0.00 6.13
2079 4800 3.078837 CAAGGTTTACAGTAATGCCGGT 58.921 45.455 1.90 0.00 0.00 5.28
2080 4801 3.428413 AGGTTTACAGTAATGCCGGTT 57.572 42.857 1.90 0.00 0.00 4.44
2081 4802 3.340928 AGGTTTACAGTAATGCCGGTTC 58.659 45.455 1.90 0.00 0.00 3.62
2082 4803 3.075884 GGTTTACAGTAATGCCGGTTCA 58.924 45.455 1.90 0.00 0.00 3.18
2083 4804 3.126343 GGTTTACAGTAATGCCGGTTCAG 59.874 47.826 1.90 0.00 0.00 3.02
2084 4805 2.018542 TACAGTAATGCCGGTTCAGC 57.981 50.000 1.90 0.00 0.00 4.26
2085 4806 1.019278 ACAGTAATGCCGGTTCAGCG 61.019 55.000 1.90 0.00 0.00 5.18
2086 4807 2.106683 AGTAATGCCGGTTCAGCGC 61.107 57.895 1.90 0.00 0.00 5.92
2087 4808 2.046796 TAATGCCGGTTCAGCGCA 60.047 55.556 11.47 0.00 36.84 6.09
2088 4809 2.395360 TAATGCCGGTTCAGCGCAC 61.395 57.895 11.47 0.00 34.87 5.34
2091 4812 4.389576 GCCGGTTCAGCGCACAAG 62.390 66.667 11.47 0.00 0.00 3.16
2092 4813 3.726517 CCGGTTCAGCGCACAAGG 61.727 66.667 11.47 2.86 0.00 3.61
2093 4814 3.726517 CGGTTCAGCGCACAAGGG 61.727 66.667 11.47 0.00 0.00 3.95
2101 4822 3.663176 CGCACAAGGGCCACACAG 61.663 66.667 6.18 0.00 0.00 3.66
2102 4823 3.982241 GCACAAGGGCCACACAGC 61.982 66.667 6.18 0.00 0.00 4.40
2111 4832 3.873781 GCCACACAGCCTGGTATAA 57.126 52.632 0.00 0.00 0.00 0.98
2112 4833 2.348411 GCCACACAGCCTGGTATAAT 57.652 50.000 0.00 0.00 0.00 1.28
2113 4834 3.485463 GCCACACAGCCTGGTATAATA 57.515 47.619 0.00 0.00 0.00 0.98
2114 4835 3.815809 GCCACACAGCCTGGTATAATAA 58.184 45.455 0.00 0.00 0.00 1.40
2115 4836 3.564225 GCCACACAGCCTGGTATAATAAC 59.436 47.826 0.00 0.00 0.00 1.89
2116 4837 4.686122 GCCACACAGCCTGGTATAATAACT 60.686 45.833 0.00 0.00 0.00 2.24
2117 4838 4.816385 CCACACAGCCTGGTATAATAACTG 59.184 45.833 0.00 0.00 0.00 3.16
2118 4839 5.428253 CACACAGCCTGGTATAATAACTGT 58.572 41.667 0.00 0.00 37.37 3.55
2119 4840 6.407639 CCACACAGCCTGGTATAATAACTGTA 60.408 42.308 0.00 0.00 35.27 2.74
2120 4841 6.479001 CACACAGCCTGGTATAATAACTGTAC 59.521 42.308 0.00 0.00 35.27 2.90
2121 4842 6.383147 ACACAGCCTGGTATAATAACTGTACT 59.617 38.462 0.00 0.00 35.27 2.73
2122 4843 7.562454 ACACAGCCTGGTATAATAACTGTACTA 59.438 37.037 0.00 0.00 35.27 1.82
2123 4844 8.585881 CACAGCCTGGTATAATAACTGTACTAT 58.414 37.037 0.00 0.00 35.27 2.12
2124 4845 9.818270 ACAGCCTGGTATAATAACTGTACTATA 57.182 33.333 0.00 0.00 35.27 1.31
2139 4860 8.709386 ACTGTACTATAAAATGCTGAGACAAG 57.291 34.615 0.00 0.00 0.00 3.16
2140 4861 7.278868 ACTGTACTATAAAATGCTGAGACAAGC 59.721 37.037 0.00 0.00 43.82 4.01
2149 4870 3.484334 GCTGAGACAAGCAAAATCCTC 57.516 47.619 0.00 0.00 43.01 3.71
2150 4871 2.163211 GCTGAGACAAGCAAAATCCTCC 59.837 50.000 0.00 0.00 43.01 4.30
2151 4872 3.683802 CTGAGACAAGCAAAATCCTCCT 58.316 45.455 0.00 0.00 0.00 3.69
2152 4873 4.077822 CTGAGACAAGCAAAATCCTCCTT 58.922 43.478 0.00 0.00 0.00 3.36
2153 4874 4.473444 TGAGACAAGCAAAATCCTCCTTT 58.527 39.130 0.00 0.00 0.00 3.11
2154 4875 4.279169 TGAGACAAGCAAAATCCTCCTTTG 59.721 41.667 0.00 0.00 36.94 2.77
2155 4876 4.218312 AGACAAGCAAAATCCTCCTTTGT 58.782 39.130 0.00 0.00 36.38 2.83
2156 4877 4.651045 AGACAAGCAAAATCCTCCTTTGTT 59.349 37.500 0.00 0.00 36.38 2.83
2157 4878 5.833131 AGACAAGCAAAATCCTCCTTTGTTA 59.167 36.000 0.00 0.00 36.38 2.41
2158 4879 6.494835 AGACAAGCAAAATCCTCCTTTGTTAT 59.505 34.615 0.00 0.00 36.38 1.89
2159 4880 7.015584 AGACAAGCAAAATCCTCCTTTGTTATT 59.984 33.333 0.00 0.00 36.38 1.40
2160 4881 7.154656 ACAAGCAAAATCCTCCTTTGTTATTC 58.845 34.615 0.00 0.00 36.38 1.75
2161 4882 6.916360 AGCAAAATCCTCCTTTGTTATTCA 57.084 33.333 0.00 0.00 36.38 2.57
2162 4883 7.486407 AGCAAAATCCTCCTTTGTTATTCAT 57.514 32.000 0.00 0.00 36.38 2.57
2163 4884 7.550712 AGCAAAATCCTCCTTTGTTATTCATC 58.449 34.615 0.00 0.00 36.38 2.92
2164 4885 7.178983 AGCAAAATCCTCCTTTGTTATTCATCA 59.821 33.333 0.00 0.00 36.38 3.07
2165 4886 7.983484 GCAAAATCCTCCTTTGTTATTCATCAT 59.017 33.333 0.00 0.00 36.38 2.45
2166 4887 9.880157 CAAAATCCTCCTTTGTTATTCATCATT 57.120 29.630 0.00 0.00 0.00 2.57
2170 4891 9.699410 ATCCTCCTTTGTTATTCATCATTAACA 57.301 29.630 0.00 0.00 36.73 2.41
2171 4892 8.956426 TCCTCCTTTGTTATTCATCATTAACAC 58.044 33.333 0.00 0.00 37.87 3.32
2172 4893 8.739039 CCTCCTTTGTTATTCATCATTAACACA 58.261 33.333 0.00 0.00 37.87 3.72
2175 4896 9.912634 CCTTTGTTATTCATCATTAACACAAGT 57.087 29.630 0.00 0.00 37.87 3.16
2178 4899 9.891828 TTGTTATTCATCATTAACACAAGTCAC 57.108 29.630 0.00 0.00 37.87 3.67
2179 4900 8.511321 TGTTATTCATCATTAACACAAGTCACC 58.489 33.333 0.00 0.00 34.33 4.02
2180 4901 8.730680 GTTATTCATCATTAACACAAGTCACCT 58.269 33.333 0.00 0.00 0.00 4.00
2181 4902 6.801539 TTCATCATTAACACAAGTCACCTC 57.198 37.500 0.00 0.00 0.00 3.85
2182 4903 6.114187 TCATCATTAACACAAGTCACCTCT 57.886 37.500 0.00 0.00 0.00 3.69
2183 4904 7.239763 TCATCATTAACACAAGTCACCTCTA 57.760 36.000 0.00 0.00 0.00 2.43
2184 4905 7.097192 TCATCATTAACACAAGTCACCTCTAC 58.903 38.462 0.00 0.00 0.00 2.59
2185 4906 6.413783 TCATTAACACAAGTCACCTCTACA 57.586 37.500 0.00 0.00 0.00 2.74
2186 4907 6.220930 TCATTAACACAAGTCACCTCTACAC 58.779 40.000 0.00 0.00 0.00 2.90
2187 4908 5.864418 TTAACACAAGTCACCTCTACACT 57.136 39.130 0.00 0.00 0.00 3.55
2188 4909 3.735237 ACACAAGTCACCTCTACACTG 57.265 47.619 0.00 0.00 0.00 3.66
2189 4910 2.224066 ACACAAGTCACCTCTACACTGC 60.224 50.000 0.00 0.00 0.00 4.40
2190 4911 2.036475 CACAAGTCACCTCTACACTGCT 59.964 50.000 0.00 0.00 0.00 4.24
2191 4912 2.036475 ACAAGTCACCTCTACACTGCTG 59.964 50.000 0.00 0.00 0.00 4.41
2192 4913 0.605589 AGTCACCTCTACACTGCTGC 59.394 55.000 0.00 0.00 0.00 5.25
2193 4914 0.318441 GTCACCTCTACACTGCTGCA 59.682 55.000 0.88 0.88 0.00 4.41
2194 4915 1.066573 GTCACCTCTACACTGCTGCAT 60.067 52.381 1.31 0.00 0.00 3.96
2195 4916 1.205655 TCACCTCTACACTGCTGCATC 59.794 52.381 1.31 0.00 0.00 3.91
2196 4917 1.066645 CACCTCTACACTGCTGCATCA 60.067 52.381 1.31 0.00 0.00 3.07
2197 4918 1.206610 ACCTCTACACTGCTGCATCAG 59.793 52.381 15.82 15.82 39.86 2.90
2199 4920 2.428530 CCTCTACACTGCTGCATCAGTA 59.571 50.000 21.92 7.84 44.81 2.74
2200 4921 3.069300 CCTCTACACTGCTGCATCAGTAT 59.931 47.826 21.92 14.56 44.81 2.12
2201 4922 4.442612 CCTCTACACTGCTGCATCAGTATT 60.443 45.833 21.92 14.45 44.81 1.89
2202 4923 5.221322 CCTCTACACTGCTGCATCAGTATTA 60.221 44.000 21.92 14.77 44.81 0.98
2203 4924 6.410942 TCTACACTGCTGCATCAGTATTAT 57.589 37.500 21.92 11.00 44.81 1.28
2204 4925 6.450545 TCTACACTGCTGCATCAGTATTATC 58.549 40.000 21.92 0.00 44.81 1.75
2205 4926 5.027293 ACACTGCTGCATCAGTATTATCA 57.973 39.130 21.92 0.00 44.81 2.15
2206 4927 5.618236 ACACTGCTGCATCAGTATTATCAT 58.382 37.500 21.92 0.00 44.81 2.45
2207 4928 5.469084 ACACTGCTGCATCAGTATTATCATG 59.531 40.000 21.92 10.31 44.81 3.07
2208 4929 5.001874 ACTGCTGCATCAGTATTATCATGG 58.998 41.667 21.13 0.00 44.77 3.66
2209 4930 4.976864 TGCTGCATCAGTATTATCATGGT 58.023 39.130 0.00 0.00 33.43 3.55
2210 4931 6.112927 TGCTGCATCAGTATTATCATGGTA 57.887 37.500 0.00 0.00 33.43 3.25
2211 4932 5.934043 TGCTGCATCAGTATTATCATGGTAC 59.066 40.000 0.00 0.00 33.43 3.34
2212 4933 6.169094 GCTGCATCAGTATTATCATGGTACT 58.831 40.000 0.00 0.00 33.43 2.73
2213 4934 7.039082 TGCTGCATCAGTATTATCATGGTACTA 60.039 37.037 0.00 0.00 33.43 1.82
2214 4935 7.490725 GCTGCATCAGTATTATCATGGTACTAG 59.509 40.741 0.00 0.00 33.43 2.57
2215 4936 8.422577 TGCATCAGTATTATCATGGTACTAGT 57.577 34.615 0.00 0.00 0.00 2.57
2216 4937 8.306761 TGCATCAGTATTATCATGGTACTAGTG 58.693 37.037 5.39 10.53 0.00 2.74
2217 4938 7.276658 GCATCAGTATTATCATGGTACTAGTGC 59.723 40.741 5.39 3.50 34.21 4.40
2218 4939 8.526978 CATCAGTATTATCATGGTACTAGTGCT 58.473 37.037 10.95 2.24 0.00 4.40
2219 4940 9.755122 ATCAGTATTATCATGGTACTAGTGCTA 57.245 33.333 10.95 5.10 0.00 3.49
2220 4941 9.011095 TCAGTATTATCATGGTACTAGTGCTAC 57.989 37.037 10.95 3.26 0.00 3.58
2221 4942 8.793592 CAGTATTATCATGGTACTAGTGCTACA 58.206 37.037 10.95 1.78 0.00 2.74
2222 4943 9.015367 AGTATTATCATGGTACTAGTGCTACAG 57.985 37.037 10.95 1.99 0.00 2.74
2223 4944 9.011095 GTATTATCATGGTACTAGTGCTACAGA 57.989 37.037 10.95 7.26 0.00 3.41
2224 4945 5.776173 ATCATGGTACTAGTGCTACAGAC 57.224 43.478 10.95 0.00 0.00 3.51
2225 4946 4.595986 TCATGGTACTAGTGCTACAGACA 58.404 43.478 10.95 0.00 0.00 3.41
2226 4947 4.640647 TCATGGTACTAGTGCTACAGACAG 59.359 45.833 10.95 0.00 0.00 3.51
2227 4948 3.353557 TGGTACTAGTGCTACAGACAGG 58.646 50.000 10.95 0.00 0.00 4.00
2228 4949 3.009805 TGGTACTAGTGCTACAGACAGGA 59.990 47.826 10.95 0.00 0.00 3.86
2229 4950 3.377798 GGTACTAGTGCTACAGACAGGAC 59.622 52.174 10.95 0.00 37.16 3.85
2230 4951 3.156288 ACTAGTGCTACAGACAGGACA 57.844 47.619 0.00 0.00 39.18 4.02
2231 4952 3.497332 ACTAGTGCTACAGACAGGACAA 58.503 45.455 0.00 0.00 39.18 3.18
2232 4953 3.508012 ACTAGTGCTACAGACAGGACAAG 59.492 47.826 0.00 0.00 39.18 3.16
2233 4954 2.598565 AGTGCTACAGACAGGACAAGA 58.401 47.619 0.00 0.00 39.18 3.02
2234 4955 2.965831 AGTGCTACAGACAGGACAAGAA 59.034 45.455 0.00 0.00 39.18 2.52
2235 4956 3.580458 AGTGCTACAGACAGGACAAGAAT 59.420 43.478 0.00 0.00 39.18 2.40
2236 4957 4.772624 AGTGCTACAGACAGGACAAGAATA 59.227 41.667 0.00 0.00 39.18 1.75
2237 4958 5.246203 AGTGCTACAGACAGGACAAGAATAA 59.754 40.000 0.00 0.00 39.18 1.40
2238 4959 5.348997 GTGCTACAGACAGGACAAGAATAAC 59.651 44.000 0.00 0.00 36.90 1.89
2239 4960 5.011635 TGCTACAGACAGGACAAGAATAACA 59.988 40.000 0.00 0.00 0.00 2.41
2240 4961 6.109359 GCTACAGACAGGACAAGAATAACAT 58.891 40.000 0.00 0.00 0.00 2.71
2241 4962 6.036517 GCTACAGACAGGACAAGAATAACATG 59.963 42.308 0.00 0.00 0.00 3.21
2242 4963 4.697352 ACAGACAGGACAAGAATAACATGC 59.303 41.667 0.00 0.00 0.00 4.06
2243 4964 4.696877 CAGACAGGACAAGAATAACATGCA 59.303 41.667 0.00 0.00 0.00 3.96
2244 4965 4.940046 AGACAGGACAAGAATAACATGCAG 59.060 41.667 0.00 0.00 0.00 4.41
2245 4966 4.655963 ACAGGACAAGAATAACATGCAGT 58.344 39.130 0.00 0.00 0.00 4.40
2246 4967 4.697352 ACAGGACAAGAATAACATGCAGTC 59.303 41.667 0.00 0.00 0.00 3.51
2247 4968 4.940046 CAGGACAAGAATAACATGCAGTCT 59.060 41.667 0.00 0.00 0.00 3.24
2248 4969 5.413833 CAGGACAAGAATAACATGCAGTCTT 59.586 40.000 5.13 5.13 30.90 3.01
2249 4970 5.645497 AGGACAAGAATAACATGCAGTCTTC 59.355 40.000 7.44 0.03 28.43 2.87
2250 4971 5.163713 GGACAAGAATAACATGCAGTCTTCC 60.164 44.000 7.44 4.65 28.43 3.46
2251 4972 5.564550 ACAAGAATAACATGCAGTCTTCCT 58.435 37.500 7.44 0.00 28.43 3.36
2252 4973 6.006449 ACAAGAATAACATGCAGTCTTCCTT 58.994 36.000 7.44 0.00 28.43 3.36
2253 4974 6.150140 ACAAGAATAACATGCAGTCTTCCTTC 59.850 38.462 7.44 0.00 28.43 3.46
2254 4975 5.189180 AGAATAACATGCAGTCTTCCTTCC 58.811 41.667 0.00 0.00 0.00 3.46
2255 4976 2.206576 AACATGCAGTCTTCCTTCCC 57.793 50.000 0.00 0.00 0.00 3.97
2256 4977 1.366319 ACATGCAGTCTTCCTTCCCT 58.634 50.000 0.00 0.00 0.00 4.20
2276 4997 2.496817 CGGCGAGGAAGGAGGAAG 59.503 66.667 0.00 0.00 0.00 3.46
2281 5002 3.724914 GAGGAAGGAGGAAGCGGCG 62.725 68.421 0.51 0.51 0.00 6.46
2291 5012 1.734137 GAAGCGGCGAGGAGTCATA 59.266 57.895 12.98 0.00 0.00 2.15
2361 8494 1.808945 GCGAGATGATGGGCCTTAATG 59.191 52.381 4.53 0.00 0.00 1.90
2365 8498 2.785269 AGATGATGGGCCTTAATGGTGA 59.215 45.455 4.53 0.00 38.35 4.02
2367 8500 3.686227 TGATGGGCCTTAATGGTGATT 57.314 42.857 4.53 0.00 38.35 2.57
2368 8501 3.992999 TGATGGGCCTTAATGGTGATTT 58.007 40.909 4.53 0.00 38.35 2.17
2371 8504 3.515562 TGGGCCTTAATGGTGATTTTGT 58.484 40.909 4.53 0.00 38.35 2.83
2372 8505 3.906846 TGGGCCTTAATGGTGATTTTGTT 59.093 39.130 4.53 0.00 38.35 2.83
2373 8506 4.349342 TGGGCCTTAATGGTGATTTTGTTT 59.651 37.500 4.53 0.00 38.35 2.83
2374 8507 5.163152 TGGGCCTTAATGGTGATTTTGTTTT 60.163 36.000 4.53 0.00 38.35 2.43
2375 8508 5.767665 GGGCCTTAATGGTGATTTTGTTTTT 59.232 36.000 0.84 0.00 38.35 1.94
2376 8509 6.293900 GGGCCTTAATGGTGATTTTGTTTTTG 60.294 38.462 0.84 0.00 38.35 2.44
2377 8510 6.484977 GGCCTTAATGGTGATTTTGTTTTTGA 59.515 34.615 0.00 0.00 38.35 2.69
2378 8511 7.307930 GGCCTTAATGGTGATTTTGTTTTTGAG 60.308 37.037 0.00 0.00 38.35 3.02
2379 8512 7.440856 GCCTTAATGGTGATTTTGTTTTTGAGA 59.559 33.333 0.00 0.00 38.35 3.27
2380 8513 8.764287 CCTTAATGGTGATTTTGTTTTTGAGAC 58.236 33.333 0.00 0.00 0.00 3.36
2381 8514 9.311916 CTTAATGGTGATTTTGTTTTTGAGACA 57.688 29.630 0.00 0.00 0.00 3.41
2382 8515 9.658799 TTAATGGTGATTTTGTTTTTGAGACAA 57.341 25.926 0.00 0.00 35.36 3.18
2383 8516 7.775397 ATGGTGATTTTGTTTTTGAGACAAG 57.225 32.000 0.00 0.00 38.17 3.16
2384 8517 6.105333 TGGTGATTTTGTTTTTGAGACAAGG 58.895 36.000 0.00 0.00 38.17 3.61
2402 8535 2.498441 AGGGCCTTAATGGTGATGGTA 58.502 47.619 0.00 0.00 38.35 3.25
2438 8571 3.694566 GTGGGCCTCTTAATTGTGTTAGG 59.305 47.826 4.53 0.00 0.00 2.69
2648 11641 2.680352 GGGAGGCGGAGTGACAGA 60.680 66.667 0.00 0.00 0.00 3.41
2762 15191 7.429340 CGTAGTTGTCAATAGAAATTGCCAATC 59.571 37.037 0.00 0.00 41.48 2.67
2818 15247 3.869246 CCGAAAAACATAGTATCAGCCGT 59.131 43.478 0.00 0.00 0.00 5.68
2822 15251 6.464834 CGAAAAACATAGTATCAGCCGTTTTC 59.535 38.462 8.09 0.00 35.99 2.29
2836 15265 3.185797 GCCGTTTTCGCTCTTCTTCTAAA 59.814 43.478 0.00 0.00 42.58 1.85
2949 15381 3.672511 CGACTGCTCCGTACAAATGTACT 60.673 47.826 18.57 1.55 46.43 2.73
3111 15567 5.125578 TGTGTGACATAGTAGCTAAGTGGAG 59.874 44.000 0.00 0.00 0.00 3.86
3125 15584 5.705905 GCTAAGTGGAGGTTTTTGTCTACAT 59.294 40.000 0.00 0.00 0.00 2.29
3134 15593 7.203255 AGGTTTTTGTCTACATAAAGACTGC 57.797 36.000 5.68 0.00 45.12 4.40
3180 19317 6.183347 CCATATCATCCTTACATTTCCCCTC 58.817 44.000 0.00 0.00 0.00 4.30
3195 19339 2.576191 TCCCCTCTCAGTTTACCATTGG 59.424 50.000 0.00 0.00 0.00 3.16
3231 19397 3.591196 TTTTCCTTGGAATTCATGGCG 57.409 42.857 7.93 0.00 39.70 5.69
3303 19469 9.265901 CTGTAATATGTTTCTGGGAGTCTATTG 57.734 37.037 0.00 0.00 0.00 1.90
3449 19626 5.307196 ACAACTACTACCACAGGAAGATGTT 59.693 40.000 0.00 0.00 29.02 2.71
3623 19800 1.145598 AGGCATGTGAGATCGCTGG 59.854 57.895 0.00 0.00 0.00 4.85
3634 19811 0.109272 GATCGCTGGACAACTCGACA 60.109 55.000 0.00 0.00 33.59 4.35
3693 19870 3.698029 TCAAAAGTTGCTGTGCTTCTC 57.302 42.857 0.00 0.00 0.00 2.87
3953 20132 7.664318 CGGCCCTTAATTTATATACCCATATCC 59.336 40.741 0.00 0.00 0.00 2.59
4292 20485 2.752903 GGTCCCAGAATGTACGCAAAAT 59.247 45.455 0.00 0.00 0.00 1.82
4719 20916 9.886132 GTCTTAATAGGTATGAAGGTCTCAAAA 57.114 33.333 0.00 0.00 37.67 2.44
4761 20958 4.081087 ACCTTGGCATACTCGTTGAGTAAT 60.081 41.667 10.42 0.00 46.28 1.89
4762 20959 5.128171 ACCTTGGCATACTCGTTGAGTAATA 59.872 40.000 10.42 0.00 46.28 0.98
4818 21015 2.354902 GCCAACCATGAAAGGCAGT 58.645 52.632 14.75 0.00 46.26 4.40
4873 21070 4.565028 GCAGGTTTGCCTTTACCTACTAGT 60.565 45.833 0.00 0.00 44.18 2.57
5272 25381 4.062991 ACGTAGACATGGAAAAGGTTCAC 58.937 43.478 0.00 0.00 35.25 3.18
5420 25555 7.465781 GCACAAGAAAAGCAGCAAAAGAAAATA 60.466 33.333 0.00 0.00 0.00 1.40
5533 25683 6.051717 CCAATACCCATGAGTAAGTCAAGAG 58.948 44.000 0.00 0.00 39.19 2.85
5567 25720 3.429141 CGCAGCAGCAAGTGGAGG 61.429 66.667 0.82 0.00 42.27 4.30
5753 25906 8.041323 TCTTTCCTACAGAGGTAAGCTAAATTG 58.959 37.037 5.69 0.00 45.44 2.32
5811 26014 3.559069 CATTAGGATCACATGCACCCTT 58.441 45.455 0.00 0.00 0.00 3.95
6531 30983 1.553690 AAGGCGGCACCACTGAGTAT 61.554 55.000 13.08 0.00 43.14 2.12
6832 31305 3.813529 ATCACGCTGTAGAAGTTTTGC 57.186 42.857 0.00 0.00 0.00 3.68
6877 31350 2.173356 TCTGGGAGCCATACATTTCCAG 59.827 50.000 0.00 0.00 40.99 3.86
6942 31424 1.463056 CAAATCGTCTGCCGCACTTTA 59.537 47.619 0.00 0.00 36.19 1.85
6979 31461 0.521735 GTCGGAACTGTGGCCAATTC 59.478 55.000 7.24 12.17 0.00 2.17
7736 32232 9.513727 GTTTACTTTTATCTCTTACTACCTCCG 57.486 37.037 0.00 0.00 0.00 4.63
7738 32234 7.715266 ACTTTTATCTCTTACTACCTCCGTT 57.285 36.000 0.00 0.00 0.00 4.44
7739 32235 7.770201 ACTTTTATCTCTTACTACCTCCGTTC 58.230 38.462 0.00 0.00 0.00 3.95
7740 32236 6.705863 TTTATCTCTTACTACCTCCGTTCC 57.294 41.667 0.00 0.00 0.00 3.62
7741 32237 3.726557 TCTCTTACTACCTCCGTTCCA 57.273 47.619 0.00 0.00 0.00 3.53
7742 32238 4.038271 TCTCTTACTACCTCCGTTCCAA 57.962 45.455 0.00 0.00 0.00 3.53
7743 32239 4.410099 TCTCTTACTACCTCCGTTCCAAA 58.590 43.478 0.00 0.00 0.00 3.28
7746 32242 6.664816 TCTCTTACTACCTCCGTTCCAAATTA 59.335 38.462 0.00 0.00 0.00 1.40
7747 32243 6.633856 TCTTACTACCTCCGTTCCAAATTAC 58.366 40.000 0.00 0.00 0.00 1.89
7748 32244 6.438425 TCTTACTACCTCCGTTCCAAATTACT 59.562 38.462 0.00 0.00 0.00 2.24
7750 32246 2.968675 ACCTCCGTTCCAAATTACTCG 58.031 47.619 0.00 0.00 0.00 4.18
7751 32247 2.301009 ACCTCCGTTCCAAATTACTCGT 59.699 45.455 0.00 0.00 0.00 4.18
7752 32248 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
7755 32251 2.091588 CCGTTCCAAATTACTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
7757 32253 3.062042 GTTCCAAATTACTCGTCGTGGT 58.938 45.455 0.00 0.00 0.00 4.16
7758 32254 3.389925 TCCAAATTACTCGTCGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
7759 32255 3.731089 TCCAAATTACTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
7762 32258 5.406175 TCCAAATTACTCGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 0.00 1.85
7763 32259 5.178067 CCAAATTACTCGTCGTGGTTTTAGT 59.822 40.000 0.00 0.00 0.00 2.24
7764 32260 6.293027 CCAAATTACTCGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
7765 32261 6.457851 AATTACTCGTCGTGGTTTTAGTTC 57.542 37.500 0.00 0.00 0.00 3.01
7766 32262 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
7767 32263 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
7769 32265 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
7770 32266 5.295045 ACTCGTCGTGGTTTTAGTTCAAATT 59.705 36.000 0.00 0.00 0.00 1.82
7771 32267 6.121613 TCGTCGTGGTTTTAGTTCAAATTT 57.878 33.333 0.00 0.00 0.00 1.82
7772 32268 5.966503 TCGTCGTGGTTTTAGTTCAAATTTG 59.033 36.000 12.15 12.15 0.00 2.32
7773 32269 5.966503 CGTCGTGGTTTTAGTTCAAATTTGA 59.033 36.000 16.91 16.91 34.92 2.69
7787 32283 7.743520 TTCAAATTTGAACTAAAACCACGAC 57.256 32.000 26.01 0.00 41.88 4.34
7788 32284 5.966503 TCAAATTTGAACTAAAACCACGACG 59.033 36.000 18.45 0.00 33.55 5.12
7789 32285 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
7790 32286 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
7792 32288 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
7793 32289 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
7794 32290 5.531634 TGAACTAAAACCACGACGAGTAAT 58.468 37.500 0.00 0.00 0.00 1.89
7795 32291 5.984926 TGAACTAAAACCACGACGAGTAATT 59.015 36.000 0.00 1.08 0.00 1.40
7797 32293 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
7798 32294 4.477302 AAAACCACGACGAGTAATTTGG 57.523 40.909 0.00 0.00 0.00 3.28
7799 32295 3.389925 AACCACGACGAGTAATTTGGA 57.610 42.857 0.00 0.00 0.00 3.53
7800 32296 3.389925 ACCACGACGAGTAATTTGGAA 57.610 42.857 0.00 0.00 0.00 3.53
7801 32297 3.934068 ACCACGACGAGTAATTTGGAAT 58.066 40.909 0.00 0.00 0.00 3.01
7805 32301 6.091713 ACCACGACGAGTAATTTGGAATTTAG 59.908 38.462 0.00 0.00 0.00 1.85
7806 32302 6.456449 CCACGACGAGTAATTTGGAATTTAGG 60.456 42.308 0.00 0.00 0.00 2.69
7807 32303 5.583457 ACGACGAGTAATTTGGAATTTAGGG 59.417 40.000 0.00 0.00 0.00 3.53
7808 32304 5.813672 CGACGAGTAATTTGGAATTTAGGGA 59.186 40.000 0.00 0.00 0.00 4.20
7809 32305 6.018994 CGACGAGTAATTTGGAATTTAGGGAG 60.019 42.308 0.00 0.00 0.00 4.30
8041 32573 6.016024 TGCTCTTTTGATGTCAAGTAGCAATT 60.016 34.615 18.25 0.00 40.41 2.32
8501 34859 6.974932 TGTTTAGCAATTGCAACTTTGAAA 57.025 29.167 30.89 15.31 45.16 2.69
8502 34860 7.551035 TGTTTAGCAATTGCAACTTTGAAAT 57.449 28.000 30.89 9.74 45.16 2.17
8854 35242 8.165428 GCATATGTGAGTAGCGATTCTTTATTC 58.835 37.037 4.29 0.00 0.00 1.75
8868 35256 5.116069 TCTTTATTCGGTTGGCAAGTTTC 57.884 39.130 0.00 0.00 0.00 2.78
9071 35459 0.033504 CATGTATTCCCTCCGTCCCG 59.966 60.000 0.00 0.00 0.00 5.14
9084 35472 2.165030 TCCGTCCCGAAATAAGTGACTC 59.835 50.000 0.00 0.00 0.00 3.36
9116 35504 6.869206 ACTAATTTTAGGGAGTAGTGAGCA 57.131 37.500 2.63 0.00 35.08 4.26
9117 35505 6.641474 ACTAATTTTAGGGAGTAGTGAGCAC 58.359 40.000 2.63 0.00 35.08 4.40
9153 35541 2.489971 TGTAGTTTTCTTCGGTGCCTG 58.510 47.619 0.00 0.00 0.00 4.85
9245 35633 9.638176 AGGAAATAAGCTTCAAATATGATGACT 57.362 29.630 0.00 0.00 34.96 3.41
9326 35714 4.552166 TTGCTGCGCTTTATTCTATTCC 57.448 40.909 9.73 0.00 0.00 3.01
9327 35715 2.878406 TGCTGCGCTTTATTCTATTCCC 59.122 45.455 9.73 0.00 0.00 3.97
9329 35717 3.187432 GCTGCGCTTTATTCTATTCCCTC 59.813 47.826 9.73 0.00 0.00 4.30
9330 35718 3.740115 TGCGCTTTATTCTATTCCCTCC 58.260 45.455 9.73 0.00 0.00 4.30
9348 35775 5.543405 TCCCTCCATCATTTGTCATTTGTTT 59.457 36.000 0.00 0.00 0.00 2.83
9377 35804 7.062371 CACGTAAATGTTTTGAAAAGTGGACAA 59.938 33.333 0.00 0.00 0.00 3.18
9404 35831 6.677076 ACACCCTTCTGTTAGGTATTAGGATT 59.323 38.462 0.00 0.00 33.17 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
187 686 2.358898 GCACAACCTATATTGCACCTGG 59.641 50.000 0.00 0.00 34.97 4.45
200 699 0.183492 TCTTCAAGCCAGCACAACCT 59.817 50.000 0.00 0.00 0.00 3.50
424 924 2.154462 CGCTTCTGATCCTTGTGGTTT 58.846 47.619 0.00 0.00 34.23 3.27
449 949 0.462581 CGCACATGCTACACCTCCAT 60.463 55.000 1.82 0.00 39.32 3.41
665 1166 9.505995 TTTCGTACAAAAATACAGGTTTTCTTC 57.494 29.630 0.00 0.00 31.29 2.87
1036 1580 2.283966 CACCACCTCCTCCTCCGT 60.284 66.667 0.00 0.00 0.00 4.69
1329 1876 1.728490 GCATCCACCGGAAATCAGGC 61.728 60.000 9.46 0.00 34.34 4.85
1330 1877 0.107017 AGCATCCACCGGAAATCAGG 60.107 55.000 9.46 0.00 34.34 3.86
1331 1878 1.402968 CAAGCATCCACCGGAAATCAG 59.597 52.381 9.46 0.00 34.34 2.90
1332 1879 1.462616 CAAGCATCCACCGGAAATCA 58.537 50.000 9.46 0.00 34.34 2.57
1333 1880 0.740737 CCAAGCATCCACCGGAAATC 59.259 55.000 9.46 0.00 34.34 2.17
1334 1881 0.684153 CCCAAGCATCCACCGGAAAT 60.684 55.000 9.46 0.00 34.34 2.17
1335 1882 1.304052 CCCAAGCATCCACCGGAAA 60.304 57.895 9.46 0.00 34.34 3.13
1336 1883 1.784301 TTCCCAAGCATCCACCGGAA 61.784 55.000 9.46 0.00 34.34 4.30
1337 1884 1.570857 ATTCCCAAGCATCCACCGGA 61.571 55.000 9.46 0.00 35.55 5.14
1338 1885 0.684153 AATTCCCAAGCATCCACCGG 60.684 55.000 0.00 0.00 0.00 5.28
1339 1886 0.457035 CAATTCCCAAGCATCCACCG 59.543 55.000 0.00 0.00 0.00 4.94
1340 1887 1.205417 CACAATTCCCAAGCATCCACC 59.795 52.381 0.00 0.00 0.00 4.61
1341 1888 2.170166 TCACAATTCCCAAGCATCCAC 58.830 47.619 0.00 0.00 0.00 4.02
1342 1889 2.601240 TCACAATTCCCAAGCATCCA 57.399 45.000 0.00 0.00 0.00 3.41
1343 1890 2.167075 CCTTCACAATTCCCAAGCATCC 59.833 50.000 0.00 0.00 0.00 3.51
1344 1891 2.827921 ACCTTCACAATTCCCAAGCATC 59.172 45.455 0.00 0.00 0.00 3.91
1345 1892 2.893424 ACCTTCACAATTCCCAAGCAT 58.107 42.857 0.00 0.00 0.00 3.79
1346 1893 2.364970 CAACCTTCACAATTCCCAAGCA 59.635 45.455 0.00 0.00 0.00 3.91
1347 1894 2.365293 ACAACCTTCACAATTCCCAAGC 59.635 45.455 0.00 0.00 0.00 4.01
1348 1895 3.243839 CCACAACCTTCACAATTCCCAAG 60.244 47.826 0.00 0.00 0.00 3.61
1349 1896 2.697751 CCACAACCTTCACAATTCCCAA 59.302 45.455 0.00 0.00 0.00 4.12
1350 1897 2.315176 CCACAACCTTCACAATTCCCA 58.685 47.619 0.00 0.00 0.00 4.37
1351 1898 2.035832 CACCACAACCTTCACAATTCCC 59.964 50.000 0.00 0.00 0.00 3.97
1352 1899 2.693074 ACACCACAACCTTCACAATTCC 59.307 45.455 0.00 0.00 0.00 3.01
1353 1900 3.705604 CACACCACAACCTTCACAATTC 58.294 45.455 0.00 0.00 0.00 2.17
1354 1901 2.159114 GCACACCACAACCTTCACAATT 60.159 45.455 0.00 0.00 0.00 2.32
1355 1902 1.408702 GCACACCACAACCTTCACAAT 59.591 47.619 0.00 0.00 0.00 2.71
1356 1903 0.814457 GCACACCACAACCTTCACAA 59.186 50.000 0.00 0.00 0.00 3.33
1357 1904 1.034838 GGCACACCACAACCTTCACA 61.035 55.000 0.00 0.00 35.26 3.58
1358 1905 1.733526 GGCACACCACAACCTTCAC 59.266 57.895 0.00 0.00 35.26 3.18
1359 1906 1.821759 CGGCACACCACAACCTTCA 60.822 57.895 0.00 0.00 34.57 3.02
1360 1907 0.533308 TACGGCACACCACAACCTTC 60.533 55.000 0.00 0.00 34.57 3.46
1361 1908 0.816421 GTACGGCACACCACAACCTT 60.816 55.000 0.00 0.00 34.57 3.50
1362 1909 1.227734 GTACGGCACACCACAACCT 60.228 57.895 0.00 0.00 34.57 3.50
1363 1910 2.255881 GGTACGGCACACCACAACC 61.256 63.158 0.00 0.00 36.01 3.77
1364 1911 1.524165 TGGTACGGCACACCACAAC 60.524 57.895 3.19 0.00 41.17 3.32
1365 1912 2.908796 TGGTACGGCACACCACAA 59.091 55.556 3.19 0.00 41.17 3.33
1369 1916 1.743995 GGACATGGTACGGCACACC 60.744 63.158 0.00 0.00 36.54 4.16
1370 1917 0.739813 GAGGACATGGTACGGCACAC 60.740 60.000 0.00 0.00 0.00 3.82
1371 1918 1.188871 TGAGGACATGGTACGGCACA 61.189 55.000 0.00 0.00 0.00 4.57
1372 1919 0.178068 ATGAGGACATGGTACGGCAC 59.822 55.000 0.00 0.00 35.21 5.01
1373 1920 0.464036 GATGAGGACATGGTACGGCA 59.536 55.000 0.00 0.00 36.82 5.69
1374 1921 0.597637 CGATGAGGACATGGTACGGC 60.598 60.000 0.00 0.00 36.82 5.68
1375 1922 0.032130 CCGATGAGGACATGGTACGG 59.968 60.000 0.00 0.00 45.00 4.02
1376 1923 0.744874 ACCGATGAGGACATGGTACG 59.255 55.000 0.00 0.00 45.00 3.67
1377 1924 1.202533 CCACCGATGAGGACATGGTAC 60.203 57.143 0.00 0.00 45.00 3.34
1378 1925 1.119684 CCACCGATGAGGACATGGTA 58.880 55.000 0.00 0.00 45.00 3.25
1379 1926 1.907739 CCACCGATGAGGACATGGT 59.092 57.895 0.00 0.00 45.00 3.55
1380 1927 1.524621 GCCACCGATGAGGACATGG 60.525 63.158 0.00 0.00 45.00 3.66
1381 1928 1.884464 CGCCACCGATGAGGACATG 60.884 63.158 0.00 0.00 45.00 3.21
1382 1929 2.501128 CGCCACCGATGAGGACAT 59.499 61.111 0.00 0.00 45.00 3.06
1383 1930 3.770040 CCGCCACCGATGAGGACA 61.770 66.667 0.00 0.00 45.00 4.02
1384 1931 4.530857 CCCGCCACCGATGAGGAC 62.531 72.222 0.00 0.00 45.00 3.85
1416 1963 3.898627 CTATCTGCTACGGGCGGCG 62.899 68.421 0.51 0.51 46.32 6.46
1417 1964 1.521450 TACTATCTGCTACGGGCGGC 61.521 60.000 0.00 0.00 46.32 6.53
1419 1966 0.522180 CCTACTATCTGCTACGGGCG 59.478 60.000 0.00 0.00 45.43 6.13
1420 1967 0.889306 CCCTACTATCTGCTACGGGC 59.111 60.000 0.00 0.00 42.22 6.13
1421 1968 1.075050 TCCCCTACTATCTGCTACGGG 59.925 57.143 0.00 0.00 0.00 5.28
1422 1969 2.581216 TCCCCTACTATCTGCTACGG 57.419 55.000 0.00 0.00 0.00 4.02
1423 1970 3.942748 GAGATCCCCTACTATCTGCTACG 59.057 52.174 0.00 0.00 32.60 3.51
1424 1971 4.947388 CAGAGATCCCCTACTATCTGCTAC 59.053 50.000 0.00 0.00 32.60 3.58
1425 1972 5.186256 CAGAGATCCCCTACTATCTGCTA 57.814 47.826 0.00 0.00 32.60 3.49
1426 1973 4.046286 CAGAGATCCCCTACTATCTGCT 57.954 50.000 0.00 0.00 32.60 4.24
1428 1975 2.752354 CGCAGAGATCCCCTACTATCTG 59.248 54.545 0.00 0.00 37.74 2.90
1429 1976 2.377193 ACGCAGAGATCCCCTACTATCT 59.623 50.000 0.00 0.00 35.15 1.98
1430 1977 2.750712 GACGCAGAGATCCCCTACTATC 59.249 54.545 0.00 0.00 0.00 2.08
1431 1978 2.555670 GGACGCAGAGATCCCCTACTAT 60.556 54.545 0.00 0.00 0.00 2.12
1432 1979 1.202903 GGACGCAGAGATCCCCTACTA 60.203 57.143 0.00 0.00 0.00 1.82
1433 1980 0.468400 GGACGCAGAGATCCCCTACT 60.468 60.000 0.00 0.00 0.00 2.57
1434 1981 0.755698 TGGACGCAGAGATCCCCTAC 60.756 60.000 0.00 0.00 33.69 3.18
1435 1982 0.032515 TTGGACGCAGAGATCCCCTA 60.033 55.000 0.00 0.00 33.69 3.53
1436 1983 1.306141 TTGGACGCAGAGATCCCCT 60.306 57.895 0.00 0.00 33.69 4.79
1437 1984 1.153349 GTTGGACGCAGAGATCCCC 60.153 63.158 0.00 0.00 33.69 4.81
1438 1985 1.153349 GGTTGGACGCAGAGATCCC 60.153 63.158 0.00 0.00 33.69 3.85
1439 1986 1.519455 CGGTTGGACGCAGAGATCC 60.519 63.158 0.00 0.00 35.37 3.36
1440 1987 4.094684 CGGTTGGACGCAGAGATC 57.905 61.111 0.00 0.00 0.00 2.75
1463 2010 3.204827 CTGCCAATTCCCTCGCGG 61.205 66.667 6.13 0.00 0.00 6.46
1464 2011 2.436646 ACTGCCAATTCCCTCGCG 60.437 61.111 0.00 0.00 0.00 5.87
1465 2012 3.056313 GCACTGCCAATTCCCTCGC 62.056 63.158 0.00 0.00 0.00 5.03
1466 2013 1.651240 CTGCACTGCCAATTCCCTCG 61.651 60.000 0.00 0.00 0.00 4.63
1467 2014 1.318158 CCTGCACTGCCAATTCCCTC 61.318 60.000 0.00 0.00 0.00 4.30
1468 2015 1.304713 CCTGCACTGCCAATTCCCT 60.305 57.895 0.00 0.00 0.00 4.20
1469 2016 2.353610 CCCTGCACTGCCAATTCCC 61.354 63.158 0.00 0.00 0.00 3.97
1470 2017 2.353610 CCCCTGCACTGCCAATTCC 61.354 63.158 0.00 0.00 0.00 3.01
1471 2018 2.353610 CCCCCTGCACTGCCAATTC 61.354 63.158 0.00 0.00 0.00 2.17
1472 2019 2.284112 CCCCCTGCACTGCCAATT 60.284 61.111 0.00 0.00 0.00 2.32
1478 2025 4.729918 GTGAGGCCCCCTGCACTG 62.730 72.222 0.00 0.00 43.89 3.66
1505 2052 1.446966 GCAGGAGAAGACAGGCGTC 60.447 63.158 1.99 1.99 42.95 5.19
1506 2053 2.659610 GCAGGAGAAGACAGGCGT 59.340 61.111 0.00 0.00 0.00 5.68
1507 2054 2.125350 GGCAGGAGAAGACAGGCG 60.125 66.667 0.00 0.00 0.00 5.52
1508 2055 1.220477 GAGGCAGGAGAAGACAGGC 59.780 63.158 0.00 0.00 0.00 4.85
1509 2056 1.621672 GGGAGGCAGGAGAAGACAGG 61.622 65.000 0.00 0.00 0.00 4.00
1510 2057 1.904032 GGGAGGCAGGAGAAGACAG 59.096 63.158 0.00 0.00 0.00 3.51
1511 2058 1.984570 CGGGAGGCAGGAGAAGACA 60.985 63.158 0.00 0.00 0.00 3.41
1512 2059 2.896443 CGGGAGGCAGGAGAAGAC 59.104 66.667 0.00 0.00 0.00 3.01
1513 2060 3.077556 GCGGGAGGCAGGAGAAGA 61.078 66.667 0.00 0.00 42.87 2.87
1530 2077 3.507009 GAGTCGAGTCGTCGGGGG 61.507 72.222 13.12 0.00 46.80 5.40
1531 2078 2.745100 TGAGTCGAGTCGTCGGGG 60.745 66.667 15.29 0.00 46.80 5.73
1532 2079 1.968703 GAGTGAGTCGAGTCGTCGGG 61.969 65.000 15.29 0.00 46.80 5.14
1533 2080 1.420702 GAGTGAGTCGAGTCGTCGG 59.579 63.158 15.29 0.00 46.80 4.79
1565 2112 5.545723 AGAGATGAAGAAAACAGAGGGAGAA 59.454 40.000 0.00 0.00 0.00 2.87
1566 2113 5.090139 AGAGATGAAGAAAACAGAGGGAGA 58.910 41.667 0.00 0.00 0.00 3.71
1567 2114 5.419239 AGAGATGAAGAAAACAGAGGGAG 57.581 43.478 0.00 0.00 0.00 4.30
1569 2116 4.940654 GGAAGAGATGAAGAAAACAGAGGG 59.059 45.833 0.00 0.00 0.00 4.30
1570 2117 5.555017 TGGAAGAGATGAAGAAAACAGAGG 58.445 41.667 0.00 0.00 0.00 3.69
1574 2121 6.298361 TCACATGGAAGAGATGAAGAAAACA 58.702 36.000 0.00 0.00 0.00 2.83
1575 2122 6.622462 GCTCACATGGAAGAGATGAAGAAAAC 60.622 42.308 14.03 0.00 33.74 2.43
1576 2123 5.413833 GCTCACATGGAAGAGATGAAGAAAA 59.586 40.000 14.03 0.00 33.74 2.29
1577 2124 4.940046 GCTCACATGGAAGAGATGAAGAAA 59.060 41.667 14.03 0.00 33.74 2.52
1579 2126 3.429960 CGCTCACATGGAAGAGATGAAGA 60.430 47.826 14.03 0.00 33.74 2.87
1617 4302 2.035783 GTGAACCCAAGGGAGGCC 59.964 66.667 13.15 0.00 38.96 5.19
1622 4307 1.074951 GGTCTGGTGAACCCAAGGG 59.925 63.158 2.91 2.91 44.65 3.95
1627 4312 1.004918 CGACTGGTCTGGTGAACCC 60.005 63.158 0.00 0.00 34.29 4.11
1672 4357 1.172812 AGAAAGTTCTTGGGCGTGGC 61.173 55.000 0.00 0.00 32.55 5.01
1676 4361 4.003648 ACTATGAAGAAAGTTCTTGGGCG 58.996 43.478 10.95 0.88 46.84 6.13
1677 4362 6.174049 ACTACTATGAAGAAAGTTCTTGGGC 58.826 40.000 10.95 0.00 46.84 5.36
1678 4363 9.720769 TTTACTACTATGAAGAAAGTTCTTGGG 57.279 33.333 10.95 1.90 46.84 4.12
1701 4390 4.981806 CCAGATCGGCCAGAAATTTTTA 57.018 40.909 2.24 0.00 0.00 1.52
1715 4404 2.152297 CTCTCATCCCCGCCAGATCG 62.152 65.000 0.00 0.00 0.00 3.69
1716 4405 1.670590 CTCTCATCCCCGCCAGATC 59.329 63.158 0.00 0.00 0.00 2.75
1717 4406 2.515071 GCTCTCATCCCCGCCAGAT 61.515 63.158 0.00 0.00 0.00 2.90
1742 4431 4.159857 CGCCGAAATAAAATGGAACGAAA 58.840 39.130 0.00 0.00 0.00 3.46
1744 4433 2.743126 ACGCCGAAATAAAATGGAACGA 59.257 40.909 0.00 0.00 0.00 3.85
1752 4441 3.264104 CCTACCTGACGCCGAAATAAAA 58.736 45.455 0.00 0.00 0.00 1.52
1757 4446 2.263540 GCCTACCTGACGCCGAAA 59.736 61.111 0.00 0.00 0.00 3.46
1778 4467 2.709475 CGTTAATGCAGGCTCGCC 59.291 61.111 0.00 0.00 0.00 5.54
1779 4468 2.023320 GCGTTAATGCAGGCTCGC 59.977 61.111 14.86 11.82 37.17 5.03
1780 4469 1.638467 GAGCGTTAATGCAGGCTCG 59.362 57.895 21.31 0.00 42.92 5.03
1782 4471 1.200020 GTTTGAGCGTTAATGCAGGCT 59.800 47.619 21.31 0.40 40.59 4.58
1783 4472 1.200020 AGTTTGAGCGTTAATGCAGGC 59.800 47.619 21.31 10.64 37.31 4.85
1784 4473 3.058293 TGAAGTTTGAGCGTTAATGCAGG 60.058 43.478 21.31 0.00 37.31 4.85
1795 4484 3.627577 TGGAACTGAACTGAAGTTTGAGC 59.372 43.478 0.00 0.00 37.98 4.26
1835 4529 1.146263 GTGATGGATGGGGTCGGAC 59.854 63.158 0.00 0.00 0.00 4.79
1837 4531 1.708993 ATGGTGATGGATGGGGTCGG 61.709 60.000 0.00 0.00 0.00 4.79
1838 4532 0.250467 GATGGTGATGGATGGGGTCG 60.250 60.000 0.00 0.00 0.00 4.79
1839 4533 0.846015 TGATGGTGATGGATGGGGTC 59.154 55.000 0.00 0.00 0.00 4.46
1840 4534 1.426598 GATGATGGTGATGGATGGGGT 59.573 52.381 0.00 0.00 0.00 4.95
1841 4535 1.272313 GGATGATGGTGATGGATGGGG 60.272 57.143 0.00 0.00 0.00 4.96
1846 4540 0.846015 GGGTGGATGATGGTGATGGA 59.154 55.000 0.00 0.00 0.00 3.41
1867 4561 0.665835 TGCTTGTGTTTAGCGTTGGG 59.334 50.000 0.00 0.00 41.54 4.12
1937 4631 1.676014 CGGGAACAGGGAGAACATGTC 60.676 57.143 0.00 0.00 0.00 3.06
1942 4636 2.434359 CGCGGGAACAGGGAGAAC 60.434 66.667 0.00 0.00 0.00 3.01
1950 4644 2.745884 CAATCTGGCGCGGGAACA 60.746 61.111 8.83 0.00 0.00 3.18
1966 4671 4.594920 GGTAGATCCAATCCCTTGATCTCA 59.405 45.833 4.64 0.00 34.26 3.27
2003 4720 1.749033 GGCTCGGAGATAGGTTGGG 59.251 63.158 9.69 0.00 33.89 4.12
2006 4723 1.327690 TTGCGGCTCGGAGATAGGTT 61.328 55.000 9.69 0.00 33.89 3.50
2010 4727 0.459585 GTTGTTGCGGCTCGGAGATA 60.460 55.000 9.69 0.00 33.89 1.98
2076 4797 3.726517 CCCTTGTGCGCTGAACCG 61.727 66.667 9.73 0.00 0.00 4.44
2077 4798 4.043200 GCCCTTGTGCGCTGAACC 62.043 66.667 9.73 0.00 0.00 3.62
2078 4799 4.043200 GGCCCTTGTGCGCTGAAC 62.043 66.667 9.73 0.00 0.00 3.18
2079 4800 4.577677 TGGCCCTTGTGCGCTGAA 62.578 61.111 9.73 0.00 0.00 3.02
2084 4805 3.663176 CTGTGTGGCCCTTGTGCG 61.663 66.667 0.00 0.00 0.00 5.34
2085 4806 3.982241 GCTGTGTGGCCCTTGTGC 61.982 66.667 0.00 0.00 0.00 4.57
2086 4807 3.297620 GGCTGTGTGGCCCTTGTG 61.298 66.667 0.00 0.00 45.92 3.33
2093 4814 2.348411 ATTATACCAGGCTGTGTGGC 57.652 50.000 14.43 0.00 38.83 5.01
2094 4815 4.816385 CAGTTATTATACCAGGCTGTGTGG 59.184 45.833 14.43 0.70 41.30 4.17
2095 4816 5.428253 ACAGTTATTATACCAGGCTGTGTG 58.572 41.667 14.43 0.23 34.87 3.82
2096 4817 5.693769 ACAGTTATTATACCAGGCTGTGT 57.306 39.130 14.43 13.16 34.87 3.72
2097 4818 6.817184 AGTACAGTTATTATACCAGGCTGTG 58.183 40.000 14.43 7.58 37.05 3.66
2098 4819 8.722622 ATAGTACAGTTATTATACCAGGCTGT 57.277 34.615 14.43 4.32 38.88 4.40
2113 4834 9.155975 CTTGTCTCAGCATTTTATAGTACAGTT 57.844 33.333 0.00 0.00 0.00 3.16
2114 4835 7.278868 GCTTGTCTCAGCATTTTATAGTACAGT 59.721 37.037 0.00 0.00 39.83 3.55
2115 4836 7.278646 TGCTTGTCTCAGCATTTTATAGTACAG 59.721 37.037 0.00 0.00 45.14 2.74
2116 4837 7.102993 TGCTTGTCTCAGCATTTTATAGTACA 58.897 34.615 0.00 0.00 45.14 2.90
2117 4838 7.539712 TGCTTGTCTCAGCATTTTATAGTAC 57.460 36.000 0.00 0.00 45.14 2.73
2129 4850 2.163211 GGAGGATTTTGCTTGTCTCAGC 59.837 50.000 0.00 0.00 40.55 4.26
2130 4851 3.683802 AGGAGGATTTTGCTTGTCTCAG 58.316 45.455 0.00 0.00 0.00 3.35
2131 4852 3.795688 AGGAGGATTTTGCTTGTCTCA 57.204 42.857 0.00 0.00 0.00 3.27
2132 4853 4.279420 ACAAAGGAGGATTTTGCTTGTCTC 59.721 41.667 0.00 0.00 38.72 3.36
2133 4854 4.218312 ACAAAGGAGGATTTTGCTTGTCT 58.782 39.130 0.00 0.00 38.72 3.41
2134 4855 4.590850 ACAAAGGAGGATTTTGCTTGTC 57.409 40.909 0.00 0.00 38.72 3.18
2135 4856 6.670695 ATAACAAAGGAGGATTTTGCTTGT 57.329 33.333 0.00 0.00 38.72 3.16
2136 4857 7.153985 TGAATAACAAAGGAGGATTTTGCTTG 58.846 34.615 0.00 0.00 38.72 4.01
2137 4858 7.301868 TGAATAACAAAGGAGGATTTTGCTT 57.698 32.000 0.00 0.00 38.72 3.91
2138 4859 6.916360 TGAATAACAAAGGAGGATTTTGCT 57.084 33.333 0.00 0.00 38.72 3.91
2139 4860 7.322664 TGATGAATAACAAAGGAGGATTTTGC 58.677 34.615 0.00 0.00 38.72 3.68
2140 4861 9.880157 AATGATGAATAACAAAGGAGGATTTTG 57.120 29.630 0.00 0.00 40.48 2.44
2144 4865 9.699410 TGTTAATGATGAATAACAAAGGAGGAT 57.301 29.630 0.00 0.00 38.64 3.24
2145 4866 8.956426 GTGTTAATGATGAATAACAAAGGAGGA 58.044 33.333 0.00 0.00 42.00 3.71
2146 4867 8.739039 TGTGTTAATGATGAATAACAAAGGAGG 58.261 33.333 0.00 0.00 42.00 4.30
2149 4870 9.912634 ACTTGTGTTAATGATGAATAACAAAGG 57.087 29.630 13.73 5.83 42.00 3.11
2152 4873 9.891828 GTGACTTGTGTTAATGATGAATAACAA 57.108 29.630 0.00 0.00 42.00 2.83
2153 4874 8.511321 GGTGACTTGTGTTAATGATGAATAACA 58.489 33.333 0.00 0.00 39.12 2.41
2154 4875 8.730680 AGGTGACTTGTGTTAATGATGAATAAC 58.269 33.333 0.00 0.00 37.44 1.89
2155 4876 8.862325 AGGTGACTTGTGTTAATGATGAATAA 57.138 30.769 0.00 0.00 37.44 1.40
2156 4877 8.321353 AGAGGTGACTTGTGTTAATGATGAATA 58.679 33.333 0.00 0.00 44.43 1.75
2157 4878 7.170965 AGAGGTGACTTGTGTTAATGATGAAT 58.829 34.615 0.00 0.00 44.43 2.57
2158 4879 6.533730 AGAGGTGACTTGTGTTAATGATGAA 58.466 36.000 0.00 0.00 44.43 2.57
2159 4880 6.114187 AGAGGTGACTTGTGTTAATGATGA 57.886 37.500 0.00 0.00 44.43 2.92
2160 4881 6.873605 TGTAGAGGTGACTTGTGTTAATGATG 59.126 38.462 0.00 0.00 44.43 3.07
2161 4882 6.874134 GTGTAGAGGTGACTTGTGTTAATGAT 59.126 38.462 0.00 0.00 44.43 2.45
2162 4883 6.041637 AGTGTAGAGGTGACTTGTGTTAATGA 59.958 38.462 0.00 0.00 44.43 2.57
2163 4884 6.146184 CAGTGTAGAGGTGACTTGTGTTAATG 59.854 42.308 0.00 0.00 44.43 1.90
2164 4885 6.223852 CAGTGTAGAGGTGACTTGTGTTAAT 58.776 40.000 0.00 0.00 44.43 1.40
2165 4886 5.597806 CAGTGTAGAGGTGACTTGTGTTAA 58.402 41.667 0.00 0.00 44.43 2.01
2166 4887 4.500887 GCAGTGTAGAGGTGACTTGTGTTA 60.501 45.833 0.00 0.00 44.43 2.41
2167 4888 3.741388 GCAGTGTAGAGGTGACTTGTGTT 60.741 47.826 0.00 0.00 44.43 3.32
2168 4889 2.224066 GCAGTGTAGAGGTGACTTGTGT 60.224 50.000 0.00 0.00 44.43 3.72
2169 4890 2.036475 AGCAGTGTAGAGGTGACTTGTG 59.964 50.000 0.00 0.00 44.43 3.33
2170 4891 2.036475 CAGCAGTGTAGAGGTGACTTGT 59.964 50.000 0.00 0.00 44.43 3.16
2171 4892 2.681706 CAGCAGTGTAGAGGTGACTTG 58.318 52.381 0.00 0.00 44.43 3.16
2172 4893 1.001406 GCAGCAGTGTAGAGGTGACTT 59.999 52.381 0.00 0.00 44.43 3.01
2174 4895 0.318441 TGCAGCAGTGTAGAGGTGAC 59.682 55.000 0.00 0.00 35.37 3.67
2175 4896 1.205655 GATGCAGCAGTGTAGAGGTGA 59.794 52.381 0.00 0.00 35.37 4.02
2176 4897 1.066645 TGATGCAGCAGTGTAGAGGTG 60.067 52.381 0.00 0.00 36.39 4.00
2177 4898 1.206610 CTGATGCAGCAGTGTAGAGGT 59.793 52.381 23.67 0.00 0.00 3.85
2178 4899 1.206610 ACTGATGCAGCAGTGTAGAGG 59.793 52.381 34.99 9.45 46.72 3.69
2179 4900 2.669300 ACTGATGCAGCAGTGTAGAG 57.331 50.000 34.99 10.24 46.72 2.43
2186 4907 5.001874 ACCATGATAATACTGATGCAGCAG 58.998 41.667 29.47 29.47 41.63 4.24
2187 4908 4.976864 ACCATGATAATACTGATGCAGCA 58.023 39.130 3.82 3.82 34.37 4.41
2188 4909 6.169094 AGTACCATGATAATACTGATGCAGC 58.831 40.000 0.00 0.00 34.37 5.25
2189 4910 8.526978 ACTAGTACCATGATAATACTGATGCAG 58.473 37.037 0.00 0.00 37.52 4.41
2190 4911 8.306761 CACTAGTACCATGATAATACTGATGCA 58.693 37.037 0.00 0.00 31.65 3.96
2191 4912 7.276658 GCACTAGTACCATGATAATACTGATGC 59.723 40.741 0.00 7.40 35.65 3.91
2192 4913 8.526978 AGCACTAGTACCATGATAATACTGATG 58.473 37.037 0.00 1.91 31.65 3.07
2193 4914 8.657387 AGCACTAGTACCATGATAATACTGAT 57.343 34.615 0.00 0.00 31.65 2.90
2194 4915 9.011095 GTAGCACTAGTACCATGATAATACTGA 57.989 37.037 0.00 0.00 31.65 3.41
2195 4916 8.793592 TGTAGCACTAGTACCATGATAATACTG 58.206 37.037 0.00 0.00 31.65 2.74
2196 4917 8.935614 TGTAGCACTAGTACCATGATAATACT 57.064 34.615 0.00 0.00 33.73 2.12
2197 4918 9.011095 TCTGTAGCACTAGTACCATGATAATAC 57.989 37.037 0.00 0.00 0.00 1.89
2198 4919 9.011095 GTCTGTAGCACTAGTACCATGATAATA 57.989 37.037 0.00 0.00 0.00 0.98
2199 4920 7.505923 TGTCTGTAGCACTAGTACCATGATAAT 59.494 37.037 0.00 0.00 0.00 1.28
2200 4921 6.831868 TGTCTGTAGCACTAGTACCATGATAA 59.168 38.462 0.00 0.00 0.00 1.75
2201 4922 6.362248 TGTCTGTAGCACTAGTACCATGATA 58.638 40.000 0.00 0.00 0.00 2.15
2202 4923 5.201243 TGTCTGTAGCACTAGTACCATGAT 58.799 41.667 0.00 0.00 0.00 2.45
2203 4924 4.595986 TGTCTGTAGCACTAGTACCATGA 58.404 43.478 0.00 0.00 0.00 3.07
2204 4925 4.202060 CCTGTCTGTAGCACTAGTACCATG 60.202 50.000 0.00 0.00 0.00 3.66
2205 4926 3.954904 CCTGTCTGTAGCACTAGTACCAT 59.045 47.826 0.00 0.00 0.00 3.55
2206 4927 3.009805 TCCTGTCTGTAGCACTAGTACCA 59.990 47.826 0.00 0.00 0.00 3.25
2207 4928 3.377798 GTCCTGTCTGTAGCACTAGTACC 59.622 52.174 0.00 0.00 0.00 3.34
2208 4929 4.008330 TGTCCTGTCTGTAGCACTAGTAC 58.992 47.826 0.00 0.00 0.00 2.73
2209 4930 4.296621 TGTCCTGTCTGTAGCACTAGTA 57.703 45.455 0.00 0.00 0.00 1.82
2210 4931 3.156288 TGTCCTGTCTGTAGCACTAGT 57.844 47.619 0.00 0.00 0.00 2.57
2211 4932 3.759086 TCTTGTCCTGTCTGTAGCACTAG 59.241 47.826 0.00 0.00 0.00 2.57
2212 4933 3.763057 TCTTGTCCTGTCTGTAGCACTA 58.237 45.455 0.00 0.00 0.00 2.74
2213 4934 2.598565 TCTTGTCCTGTCTGTAGCACT 58.401 47.619 0.00 0.00 0.00 4.40
2214 4935 3.386768 TTCTTGTCCTGTCTGTAGCAC 57.613 47.619 0.00 0.00 0.00 4.40
2215 4936 5.011635 TGTTATTCTTGTCCTGTCTGTAGCA 59.988 40.000 0.00 0.00 0.00 3.49
2216 4937 5.479306 TGTTATTCTTGTCCTGTCTGTAGC 58.521 41.667 0.00 0.00 0.00 3.58
2217 4938 6.036517 GCATGTTATTCTTGTCCTGTCTGTAG 59.963 42.308 0.00 0.00 0.00 2.74
2218 4939 5.874810 GCATGTTATTCTTGTCCTGTCTGTA 59.125 40.000 0.00 0.00 0.00 2.74
2219 4940 4.697352 GCATGTTATTCTTGTCCTGTCTGT 59.303 41.667 0.00 0.00 0.00 3.41
2220 4941 4.696877 TGCATGTTATTCTTGTCCTGTCTG 59.303 41.667 0.00 0.00 0.00 3.51
2221 4942 4.910195 TGCATGTTATTCTTGTCCTGTCT 58.090 39.130 0.00 0.00 0.00 3.41
2222 4943 4.697352 ACTGCATGTTATTCTTGTCCTGTC 59.303 41.667 0.00 0.00 0.00 3.51
2223 4944 4.655963 ACTGCATGTTATTCTTGTCCTGT 58.344 39.130 0.00 0.00 0.00 4.00
2224 4945 4.940046 AGACTGCATGTTATTCTTGTCCTG 59.060 41.667 0.00 0.00 0.00 3.86
2225 4946 5.171339 AGACTGCATGTTATTCTTGTCCT 57.829 39.130 0.00 0.00 0.00 3.85
2226 4947 5.163713 GGAAGACTGCATGTTATTCTTGTCC 60.164 44.000 8.62 3.46 0.00 4.02
2227 4948 5.645497 AGGAAGACTGCATGTTATTCTTGTC 59.355 40.000 8.62 0.00 0.00 3.18
2228 4949 5.564550 AGGAAGACTGCATGTTATTCTTGT 58.435 37.500 8.62 0.00 0.00 3.16
2229 4950 6.404074 GGAAGGAAGACTGCATGTTATTCTTG 60.404 42.308 8.62 0.00 0.00 3.02
2230 4951 5.649831 GGAAGGAAGACTGCATGTTATTCTT 59.350 40.000 0.00 0.00 0.00 2.52
2231 4952 5.189180 GGAAGGAAGACTGCATGTTATTCT 58.811 41.667 0.00 0.00 0.00 2.40
2232 4953 4.336713 GGGAAGGAAGACTGCATGTTATTC 59.663 45.833 0.00 0.00 0.00 1.75
2233 4954 4.018050 AGGGAAGGAAGACTGCATGTTATT 60.018 41.667 0.00 0.00 0.00 1.40
2234 4955 3.525199 AGGGAAGGAAGACTGCATGTTAT 59.475 43.478 0.00 0.00 0.00 1.89
2235 4956 2.912956 AGGGAAGGAAGACTGCATGTTA 59.087 45.455 0.00 0.00 0.00 2.41
2236 4957 1.707427 AGGGAAGGAAGACTGCATGTT 59.293 47.619 0.00 0.00 0.00 2.71
2237 4958 1.004044 CAGGGAAGGAAGACTGCATGT 59.996 52.381 0.00 0.00 0.00 3.21
2238 4959 1.747709 CAGGGAAGGAAGACTGCATG 58.252 55.000 0.00 0.00 0.00 4.06
2242 4963 1.078848 CGGCAGGGAAGGAAGACTG 60.079 63.158 0.00 0.00 0.00 3.51
2243 4964 2.294078 CCGGCAGGGAAGGAAGACT 61.294 63.158 0.00 0.00 38.47 3.24
2244 4965 2.269241 CCGGCAGGGAAGGAAGAC 59.731 66.667 0.00 0.00 38.47 3.01
2245 4966 3.717294 GCCGGCAGGGAAGGAAGA 61.717 66.667 24.80 0.00 38.47 2.87
2255 4976 4.521062 CTCCTTCCTCGCCGGCAG 62.521 72.222 28.98 21.57 0.00 4.85
2276 4997 1.583054 AAAATATGACTCCTCGCCGC 58.417 50.000 0.00 0.00 0.00 6.53
2361 8494 5.523552 CCCTTGTCTCAAAAACAAAATCACC 59.476 40.000 0.00 0.00 36.27 4.02
2365 8498 4.164030 AGGCCCTTGTCTCAAAAACAAAAT 59.836 37.500 0.00 0.00 36.27 1.82
2367 8500 3.103742 AGGCCCTTGTCTCAAAAACAAA 58.896 40.909 0.00 0.00 36.27 2.83
2368 8501 2.745968 AGGCCCTTGTCTCAAAAACAA 58.254 42.857 0.00 0.00 35.44 2.83
2371 8504 4.283212 CCATTAAGGCCCTTGTCTCAAAAA 59.717 41.667 6.16 0.00 0.00 1.94
2372 8505 3.831911 CCATTAAGGCCCTTGTCTCAAAA 59.168 43.478 6.16 0.00 0.00 2.44
2373 8506 3.181423 ACCATTAAGGCCCTTGTCTCAAA 60.181 43.478 6.16 0.00 43.14 2.69
2374 8507 2.378547 ACCATTAAGGCCCTTGTCTCAA 59.621 45.455 6.16 0.00 43.14 3.02
2375 8508 1.992557 ACCATTAAGGCCCTTGTCTCA 59.007 47.619 6.16 0.00 43.14 3.27
2376 8509 2.026262 TCACCATTAAGGCCCTTGTCTC 60.026 50.000 6.16 0.00 43.14 3.36
2377 8510 1.992557 TCACCATTAAGGCCCTTGTCT 59.007 47.619 6.16 0.00 43.14 3.41
2378 8511 2.507407 TCACCATTAAGGCCCTTGTC 57.493 50.000 6.16 0.00 43.14 3.18
2379 8512 2.624029 CCATCACCATTAAGGCCCTTGT 60.624 50.000 6.16 0.00 43.14 3.16
2380 8513 2.034124 CCATCACCATTAAGGCCCTTG 58.966 52.381 6.16 0.00 43.14 3.61
2381 8514 1.645919 ACCATCACCATTAAGGCCCTT 59.354 47.619 0.00 0.00 43.14 3.95
2382 8515 1.308877 ACCATCACCATTAAGGCCCT 58.691 50.000 0.00 0.00 43.14 5.19
2383 8516 3.525800 ATACCATCACCATTAAGGCCC 57.474 47.619 0.00 0.00 43.14 5.80
2384 8517 4.892934 TCAAATACCATCACCATTAAGGCC 59.107 41.667 0.00 0.00 43.14 5.19
2402 8535 1.272480 GGCCCACTACCAACCTCAAAT 60.272 52.381 0.00 0.00 0.00 2.32
2438 8571 1.542547 CCGGGCCTCCATAATGTACAC 60.543 57.143 0.84 0.00 0.00 2.90
2514 8651 3.295800 CCGTCGCCTAGAGGGTTT 58.704 61.111 0.00 0.00 46.81 3.27
2762 15191 0.734889 CTGCGGGATTAGCAACCAAG 59.265 55.000 0.00 0.00 44.67 3.61
2790 15219 6.511282 GCTGATACTATGTTTTTCGGCTTACC 60.511 42.308 0.00 0.00 36.12 2.85
2807 15236 1.204941 AGAGCGAAAACGGCTGATACT 59.795 47.619 0.00 0.00 41.72 2.12
2836 15265 5.878116 CACCATGGAAAGATGCATCATTTTT 59.122 36.000 27.81 18.91 35.11 1.94
2949 15381 2.441750 ACCCAACCTTTCTGCTTGAGTA 59.558 45.455 0.00 0.00 0.00 2.59
3111 15567 7.203255 AGCAGTCTTTATGTAGACAAAAACC 57.797 36.000 10.52 0.00 45.57 3.27
3125 15584 8.621532 ACTTGAATCAAACATAGCAGTCTTTA 57.378 30.769 0.00 0.00 0.00 1.85
3134 15593 6.623486 TGGCAATGACTTGAATCAAACATAG 58.377 36.000 12.92 0.00 34.04 2.23
3303 19469 5.814705 ACTGTCTTAAACATATCTGAGCAGC 59.185 40.000 0.00 0.00 37.23 5.25
3574 19751 8.353684 TGCTACTTTGTGAGTAATAGATAGCTC 58.646 37.037 0.00 0.00 40.25 4.09
3634 19811 2.839486 TCTGGAGAATGTTTGCTCGT 57.161 45.000 0.00 0.00 31.95 4.18
4292 20485 2.656947 AAAGCAAGGCAGAGGTACAA 57.343 45.000 0.00 0.00 0.00 2.41
4761 20958 3.518992 ACCTTGGTAGCTGCCTTTTTA 57.481 42.857 22.25 0.00 0.00 1.52
4762 20959 2.381752 ACCTTGGTAGCTGCCTTTTT 57.618 45.000 22.25 1.12 0.00 1.94
4818 21015 8.429237 AGTCTTCTAGAGAAATTTCCTCAAGA 57.571 34.615 14.61 16.06 35.79 3.02
4873 21070 8.885722 GGATGTAACCGAAAATCATACAACTAA 58.114 33.333 0.00 0.00 31.01 2.24
4889 21086 4.142469 GGTTGATCAAAAGGGATGTAACCG 60.142 45.833 10.35 0.00 34.33 4.44
5272 25381 6.258727 ACATTTTCATCTATTACGGAGTGCAG 59.741 38.462 0.00 0.00 45.73 4.41
5513 25663 7.123383 TGTATCTCTTGACTTACTCATGGGTA 58.877 38.462 0.00 0.00 0.00 3.69
5533 25683 1.770085 GCGGCTGCAGCTTCTGTATC 61.770 60.000 35.82 16.98 42.15 2.24
5567 25720 6.997239 AACCCGATTGTAGGATTTTAGTTC 57.003 37.500 0.00 0.00 0.00 3.01
5753 25906 7.816640 TGTAGTTTTCAATACTTCCAATCTGC 58.183 34.615 0.00 0.00 0.00 4.26
5811 26014 9.974980 GAAGTTTATTTTCTACAACCATTCCAA 57.025 29.630 0.00 0.00 0.00 3.53
5872 26076 7.402054 ACATTTGTATAGACAAGGATGGAACA 58.598 34.615 15.67 0.00 46.11 3.18
6531 30983 6.709018 TCATCTATCTGGTCATCAACGTTA 57.291 37.500 0.00 0.00 0.00 3.18
6832 31305 1.600636 ATGCCCACAGTGTTGACCG 60.601 57.895 0.00 0.00 0.00 4.79
6877 31350 5.123344 ACACCACAGTTTAACACAGAACTTC 59.877 40.000 0.00 0.00 34.04 3.01
6942 31424 3.113322 CGACGGACGATTTGTATGTCAT 58.887 45.455 0.00 0.00 45.77 3.06
7459 31942 5.574188 AGCAAGATGAATTGGTAACTTCCT 58.426 37.500 0.00 0.00 39.03 3.36
7729 32225 3.511146 ACGAGTAATTTGGAACGGAGGTA 59.489 43.478 0.00 0.00 0.00 3.08
7730 32226 2.301009 ACGAGTAATTTGGAACGGAGGT 59.699 45.455 0.00 0.00 0.00 3.85
7731 32227 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
7732 32228 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
7733 32229 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
7735 32231 2.091588 CCACGACGAGTAATTTGGAACG 59.908 50.000 0.00 0.00 0.00 3.95
7736 32232 3.062042 ACCACGACGAGTAATTTGGAAC 58.938 45.455 0.00 0.00 0.00 3.62
7738 32234 3.389925 AACCACGACGAGTAATTTGGA 57.610 42.857 0.00 0.00 0.00 3.53
7739 32235 4.477302 AAAACCACGACGAGTAATTTGG 57.523 40.909 0.00 0.00 0.00 3.28
7740 32236 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
7741 32237 6.479660 TGAACTAAAACCACGACGAGTAATTT 59.520 34.615 0.00 0.34 0.00 1.82
7742 32238 5.984926 TGAACTAAAACCACGACGAGTAATT 59.015 36.000 0.00 1.08 0.00 1.40
7743 32239 5.531634 TGAACTAAAACCACGACGAGTAAT 58.468 37.500 0.00 0.00 0.00 1.89
7746 32242 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
7747 32243 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
7748 32244 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
7750 32246 7.743520 TTCAAATTTGAACTAAAACCACGAC 57.256 32.000 26.01 0.00 41.88 4.34
7763 32259 6.469595 CGTCGTGGTTTTAGTTCAAATTTGAA 59.530 34.615 26.01 26.01 44.31 2.69
7764 32260 5.966503 CGTCGTGGTTTTAGTTCAAATTTGA 59.033 36.000 16.91 16.91 34.92 2.69
7765 32261 5.966503 TCGTCGTGGTTTTAGTTCAAATTTG 59.033 36.000 12.15 12.15 0.00 2.32
7766 32262 6.121613 TCGTCGTGGTTTTAGTTCAAATTT 57.878 33.333 0.00 0.00 0.00 1.82
7767 32263 5.295045 ACTCGTCGTGGTTTTAGTTCAAATT 59.705 36.000 0.00 0.00 0.00 1.82
7769 32265 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
7770 32266 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
7771 32267 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
7772 32268 6.457851 AATTACTCGTCGTGGTTTTAGTTC 57.542 37.500 0.00 0.00 0.00 3.01
7773 32269 6.293027 CCAAATTACTCGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
7775 32271 5.406175 TCCAAATTACTCGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 0.00 1.85
7776 32272 5.295950 TCCAAATTACTCGTCGTGGTTTTA 58.704 37.500 0.00 0.00 0.00 1.52
7777 32273 4.128643 TCCAAATTACTCGTCGTGGTTTT 58.871 39.130 0.00 0.00 0.00 2.43
7778 32274 3.731089 TCCAAATTACTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
7780 32276 3.389925 TTCCAAATTACTCGTCGTGGT 57.610 42.857 0.00 0.00 0.00 4.16
7781 32277 4.939509 AATTCCAAATTACTCGTCGTGG 57.060 40.909 0.00 0.00 0.00 4.94
7782 32278 6.456449 CCCTAAATTCCAAATTACTCGTCGTG 60.456 42.308 0.00 0.00 0.00 4.35
7784 32280 5.813672 TCCCTAAATTCCAAATTACTCGTCG 59.186 40.000 0.00 0.00 0.00 5.12
7786 32282 6.718294 ACTCCCTAAATTCCAAATTACTCGT 58.282 36.000 0.00 0.00 0.00 4.18
7787 32283 8.202137 TCTACTCCCTAAATTCCAAATTACTCG 58.798 37.037 0.00 0.00 0.00 4.18
7792 32288 9.634021 GAAGATCTACTCCCTAAATTCCAAATT 57.366 33.333 0.00 0.00 0.00 1.82
7793 32289 9.008584 AGAAGATCTACTCCCTAAATTCCAAAT 57.991 33.333 0.00 0.00 0.00 2.32
7794 32290 8.267894 CAGAAGATCTACTCCCTAAATTCCAAA 58.732 37.037 0.00 0.00 0.00 3.28
7795 32291 7.147479 CCAGAAGATCTACTCCCTAAATTCCAA 60.147 40.741 0.00 0.00 0.00 3.53
7797 32293 6.555360 TCCAGAAGATCTACTCCCTAAATTCC 59.445 42.308 0.00 0.00 0.00 3.01
7798 32294 7.604657 TCCAGAAGATCTACTCCCTAAATTC 57.395 40.000 0.00 0.00 0.00 2.17
7799 32295 9.320295 CTATCCAGAAGATCTACTCCCTAAATT 57.680 37.037 0.00 0.00 36.33 1.82
7800 32296 7.898636 CCTATCCAGAAGATCTACTCCCTAAAT 59.101 40.741 0.00 0.00 36.33 1.40
7801 32297 7.242359 CCTATCCAGAAGATCTACTCCCTAAA 58.758 42.308 0.00 0.00 36.33 1.85
7805 32301 3.767131 GCCTATCCAGAAGATCTACTCCC 59.233 52.174 0.00 0.00 36.33 4.30
7806 32302 4.411927 TGCCTATCCAGAAGATCTACTCC 58.588 47.826 0.00 0.00 36.33 3.85
7807 32303 5.538433 ACTTGCCTATCCAGAAGATCTACTC 59.462 44.000 0.00 0.00 36.33 2.59
7808 32304 5.463154 ACTTGCCTATCCAGAAGATCTACT 58.537 41.667 0.00 0.00 36.33 2.57
7809 32305 5.799827 ACTTGCCTATCCAGAAGATCTAC 57.200 43.478 0.00 0.00 36.33 2.59
8041 32573 6.376864 TGCTAATAAACAAGCAGCCTATTTGA 59.623 34.615 0.00 0.00 33.06 2.69
8477 34835 6.586868 TTCAAAGTTGCAATTGCTAAACAG 57.413 33.333 29.37 18.48 42.66 3.16
8502 34860 9.186837 ACGATTAGGTTTCTCAAGAAGTCTATA 57.813 33.333 0.00 0.00 35.21 1.31
8622 34987 5.470098 TCACAGAGTTTTGAAATAGCAGTCC 59.530 40.000 0.00 0.00 0.00 3.85
8868 35256 6.662414 ACACATCAACAAATACATCTACGG 57.338 37.500 0.00 0.00 0.00 4.02
9098 35486 2.232941 CGGTGCTCACTACTCCCTAAAA 59.767 50.000 0.00 0.00 0.00 1.52
9153 35541 3.753272 TCAAACTGAAACTATGCTCCTGC 59.247 43.478 0.00 0.00 40.20 4.85
9326 35714 5.121142 GCAAACAAATGACAAATGATGGAGG 59.879 40.000 0.00 0.00 0.00 4.30
9327 35715 5.121142 GGCAAACAAATGACAAATGATGGAG 59.879 40.000 0.00 0.00 0.00 3.86
9329 35717 4.755629 TGGCAAACAAATGACAAATGATGG 59.244 37.500 0.00 0.00 34.74 3.51
9330 35718 5.612925 CGTGGCAAACAAATGACAAATGATG 60.613 40.000 0.00 0.00 40.79 3.07
9348 35775 5.289675 CACTTTTCAAAACATTTACGTGGCA 59.710 36.000 0.00 0.00 0.00 4.92
9377 35804 5.189145 CCTAATACCTAACAGAAGGGTGTGT 59.811 44.000 0.00 0.00 41.32 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.