Multiple sequence alignment - TraesCS5A01G299100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G299100 chr5A 100.000 4325 0 0 1 4325 507964637 507968961 0.000000e+00 7987.0
1 TraesCS5A01G299100 chr5A 92.470 332 23 2 3995 4325 170841400 170841070 1.410000e-129 473.0
2 TraesCS5A01G299100 chr5A 96.581 117 3 1 1743 1858 455465762 455465646 4.410000e-45 193.0
3 TraesCS5A01G299100 chr5D 96.700 1788 54 2 1854 3636 402202446 402204233 0.000000e+00 2970.0
4 TraesCS5A01G299100 chr5D 93.901 869 31 9 891 1751 402201594 402202448 0.000000e+00 1291.0
5 TraesCS5A01G299100 chr5D 93.559 590 31 3 3735 4323 402204233 402204816 0.000000e+00 872.0
6 TraesCS5A01G299100 chr5D 86.594 731 59 13 179 874 402200887 402201613 0.000000e+00 771.0
7 TraesCS5A01G299100 chr5D 90.374 187 13 2 1 182 402192178 402192364 1.550000e-59 241.0
8 TraesCS5A01G299100 chr5B 96.736 1624 49 1 1854 3473 481141797 481143420 0.000000e+00 2702.0
9 TraesCS5A01G299100 chr5B 93.960 1010 33 12 754 1751 481140806 481141799 0.000000e+00 1502.0
10 TraesCS5A01G299100 chr5B 92.598 689 49 2 3638 4325 481143775 481144462 0.000000e+00 989.0
11 TraesCS5A01G299100 chr5B 92.655 177 5 2 3459 3635 481143437 481143605 9.290000e-62 248.0
12 TraesCS5A01G299100 chr2D 81.235 858 146 12 2479 3324 366498268 366499122 0.000000e+00 678.0
13 TraesCS5A01G299100 chr2D 99.115 113 0 1 1744 1856 382457168 382457279 7.330000e-48 202.0
14 TraesCS5A01G299100 chr2B 80.980 857 150 10 2479 3324 435156422 435157276 0.000000e+00 667.0
15 TraesCS5A01G299100 chr2B 92.239 335 21 4 3995 4325 722461646 722461979 1.820000e-128 470.0
16 TraesCS5A01G299100 chr2A 80.747 857 152 10 2479 3324 495958007 495958861 0.000000e+00 656.0
17 TraesCS5A01G299100 chr2A 91.789 341 22 5 3989 4325 438524551 438524213 1.820000e-128 470.0
18 TraesCS5A01G299100 chr2A 95.935 123 3 2 1749 1869 75116433 75116555 9.490000e-47 198.0
19 TraesCS5A01G299100 chr2A 93.077 130 7 2 1749 1877 510433588 510433460 5.710000e-44 189.0
20 TraesCS5A01G299100 chr3D 92.771 332 22 2 3995 4325 329443871 329443541 3.030000e-131 479.0
21 TraesCS5A01G299100 chr3D 95.238 126 4 2 1746 1869 339050185 339050060 9.490000e-47 198.0
22 TraesCS5A01G299100 chr3D 74.580 476 91 20 82 532 464039545 464040015 9.550000e-42 182.0
23 TraesCS5A01G299100 chr3D 74.375 320 56 17 337 636 313937185 313937498 3.530000e-21 113.0
24 TraesCS5A01G299100 chr1D 92.470 332 23 2 3995 4325 124319912 124320242 1.410000e-129 473.0
25 TraesCS5A01G299100 chr6A 92.424 330 23 2 3995 4323 58016548 58016220 1.820000e-128 470.0
26 TraesCS5A01G299100 chr6A 77.650 349 77 1 90 437 277185212 277184864 1.220000e-50 211.0
27 TraesCS5A01G299100 chr6A 98.198 111 2 0 1749 1859 475435162 475435052 1.230000e-45 195.0
28 TraesCS5A01G299100 chr4A 92.169 332 24 2 3995 4325 222529110 222528780 6.550000e-128 468.0
29 TraesCS5A01G299100 chr4A 98.276 116 2 0 1746 1861 315236347 315236462 2.040000e-48 204.0
30 TraesCS5A01G299100 chr7B 83.596 445 68 3 82 522 94307855 94308298 3.110000e-111 412.0
31 TraesCS5A01G299100 chr6D 79.944 354 70 1 90 442 223926187 223925834 4.290000e-65 259.0
32 TraesCS5A01G299100 chr3A 96.183 131 3 2 1749 1878 550641945 550641816 3.390000e-51 213.0
33 TraesCS5A01G299100 chr3B 99.107 112 1 0 1748 1859 12156860 12156971 7.330000e-48 202.0
34 TraesCS5A01G299100 chr4B 77.439 164 22 13 374 528 387885841 387885684 2.770000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G299100 chr5A 507964637 507968961 4324 False 7987.00 7987 100.00000 1 4325 1 chr5A.!!$F1 4324
1 TraesCS5A01G299100 chr5D 402200887 402204816 3929 False 1476.00 2970 92.68850 179 4323 4 chr5D.!!$F2 4144
2 TraesCS5A01G299100 chr5B 481140806 481144462 3656 False 1360.25 2702 93.98725 754 4325 4 chr5B.!!$F1 3571
3 TraesCS5A01G299100 chr2D 366498268 366499122 854 False 678.00 678 81.23500 2479 3324 1 chr2D.!!$F1 845
4 TraesCS5A01G299100 chr2B 435156422 435157276 854 False 667.00 667 80.98000 2479 3324 1 chr2B.!!$F1 845
5 TraesCS5A01G299100 chr2A 495958007 495958861 854 False 656.00 656 80.74700 2479 3324 1 chr2A.!!$F2 845

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
709 739 0.109597 CTCAAGCGACCATTTGGCAC 60.110 55.000 0.00 0.00 39.32 5.01 F
1229 1269 1.129624 TCGCGAGCGTGCAAATAATTT 59.870 42.857 17.24 0.00 40.74 1.82 F
1522 1573 0.109458 GCATATGTCCCATGCATGCG 60.109 55.000 21.69 13.41 46.47 4.73 F
1525 1576 0.534877 TATGTCCCATGCATGCGTCC 60.535 55.000 21.69 8.71 0.00 4.79 F
1776 1827 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1517 1568 0.744414 AATTGGACCTCGGACGCATG 60.744 55.000 0.00 0.0 0.00 4.06 R
2334 2385 1.108776 TACGAAGCAGGTAAGGCGAT 58.891 50.000 0.00 0.0 36.08 4.58 R
2595 2646 1.384525 GTGGCGCAAATGGTGGTATA 58.615 50.000 10.83 0.0 0.00 1.47 R
2637 2688 1.768870 CGGGGTGTATCAGGAGGAATT 59.231 52.381 0.00 0.0 0.00 2.17 R
3650 3936 1.401931 CGGCTGAAATGCAACTTCTGG 60.402 52.381 15.80 9.4 34.04 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.372795 TCGCCGGTAATAAAGCCAG 57.627 52.632 1.90 0.00 0.00 4.85
19 20 0.812412 TCGCCGGTAATAAAGCCAGC 60.812 55.000 1.90 0.00 0.00 4.85
20 21 1.647084 GCCGGTAATAAAGCCAGCG 59.353 57.895 1.90 0.00 0.00 5.18
21 22 2.317230 CCGGTAATAAAGCCAGCGG 58.683 57.895 0.00 0.00 45.55 5.52
22 23 0.463116 CCGGTAATAAAGCCAGCGGT 60.463 55.000 0.00 0.00 45.67 5.68
23 24 0.935196 CGGTAATAAAGCCAGCGGTC 59.065 55.000 0.00 0.00 0.00 4.79
24 25 0.935196 GGTAATAAAGCCAGCGGTCG 59.065 55.000 0.00 0.00 0.00 4.79
25 26 0.935196 GTAATAAAGCCAGCGGTCGG 59.065 55.000 0.00 0.00 0.00 4.79
42 43 2.044650 GCATCCTTGCCAGCCTGA 60.045 61.111 0.00 0.00 43.38 3.86
43 44 1.679977 GCATCCTTGCCAGCCTGAA 60.680 57.895 0.00 0.00 43.38 3.02
44 45 1.252904 GCATCCTTGCCAGCCTGAAA 61.253 55.000 0.00 0.00 43.38 2.69
45 46 1.259609 CATCCTTGCCAGCCTGAAAA 58.740 50.000 0.00 0.00 0.00 2.29
46 47 1.619827 CATCCTTGCCAGCCTGAAAAA 59.380 47.619 0.00 0.00 0.00 1.94
47 48 1.331214 TCCTTGCCAGCCTGAAAAAG 58.669 50.000 0.00 0.00 0.00 2.27
48 49 1.133513 TCCTTGCCAGCCTGAAAAAGA 60.134 47.619 0.00 0.00 0.00 2.52
49 50 1.688197 CCTTGCCAGCCTGAAAAAGAA 59.312 47.619 0.00 0.00 0.00 2.52
50 51 2.546584 CCTTGCCAGCCTGAAAAAGAAC 60.547 50.000 0.00 0.00 0.00 3.01
51 52 1.039856 TGCCAGCCTGAAAAAGAACC 58.960 50.000 0.00 0.00 0.00 3.62
52 53 1.039856 GCCAGCCTGAAAAAGAACCA 58.960 50.000 0.00 0.00 0.00 3.67
53 54 1.269778 GCCAGCCTGAAAAAGAACCAC 60.270 52.381 0.00 0.00 0.00 4.16
54 55 1.341209 CCAGCCTGAAAAAGAACCACC 59.659 52.381 0.00 0.00 0.00 4.61
55 56 1.341209 CAGCCTGAAAAAGAACCACCC 59.659 52.381 0.00 0.00 0.00 4.61
56 57 1.217942 AGCCTGAAAAAGAACCACCCT 59.782 47.619 0.00 0.00 0.00 4.34
57 58 2.445525 AGCCTGAAAAAGAACCACCCTA 59.554 45.455 0.00 0.00 0.00 3.53
58 59 3.117284 AGCCTGAAAAAGAACCACCCTAA 60.117 43.478 0.00 0.00 0.00 2.69
59 60 3.639561 GCCTGAAAAAGAACCACCCTAAA 59.360 43.478 0.00 0.00 0.00 1.85
60 61 4.500887 GCCTGAAAAAGAACCACCCTAAAC 60.501 45.833 0.00 0.00 0.00 2.01
61 62 4.647399 CCTGAAAAAGAACCACCCTAAACA 59.353 41.667 0.00 0.00 0.00 2.83
62 63 5.304357 CCTGAAAAAGAACCACCCTAAACAT 59.696 40.000 0.00 0.00 0.00 2.71
63 64 6.155475 TGAAAAAGAACCACCCTAAACATG 57.845 37.500 0.00 0.00 0.00 3.21
64 65 4.600692 AAAAGAACCACCCTAAACATGC 57.399 40.909 0.00 0.00 0.00 4.06
65 66 2.969821 AGAACCACCCTAAACATGCA 57.030 45.000 0.00 0.00 0.00 3.96
66 67 3.237268 AGAACCACCCTAAACATGCAA 57.763 42.857 0.00 0.00 0.00 4.08
67 68 3.778265 AGAACCACCCTAAACATGCAAT 58.222 40.909 0.00 0.00 0.00 3.56
68 69 4.159557 AGAACCACCCTAAACATGCAATT 58.840 39.130 0.00 0.00 0.00 2.32
69 70 4.220602 AGAACCACCCTAAACATGCAATTC 59.779 41.667 0.00 0.00 0.00 2.17
70 71 2.831526 ACCACCCTAAACATGCAATTCC 59.168 45.455 0.00 0.00 0.00 3.01
71 72 2.159254 CCACCCTAAACATGCAATTCCG 60.159 50.000 0.00 0.00 0.00 4.30
72 73 2.099405 ACCCTAAACATGCAATTCCGG 58.901 47.619 0.00 0.00 0.00 5.14
73 74 1.408702 CCCTAAACATGCAATTCCGGG 59.591 52.381 0.00 0.00 0.00 5.73
74 75 2.099405 CCTAAACATGCAATTCCGGGT 58.901 47.619 0.00 0.00 0.00 5.28
75 76 2.495669 CCTAAACATGCAATTCCGGGTT 59.504 45.455 0.00 0.00 0.00 4.11
76 77 2.453983 AAACATGCAATTCCGGGTTG 57.546 45.000 13.96 13.96 0.00 3.77
77 78 1.337118 AACATGCAATTCCGGGTTGT 58.663 45.000 17.81 3.55 0.00 3.32
78 79 1.337118 ACATGCAATTCCGGGTTGTT 58.663 45.000 17.81 7.11 0.00 2.83
79 80 1.272212 ACATGCAATTCCGGGTTGTTC 59.728 47.619 17.81 6.72 0.00 3.18
80 81 0.894835 ATGCAATTCCGGGTTGTTCC 59.105 50.000 17.81 6.18 0.00 3.62
81 82 0.178975 TGCAATTCCGGGTTGTTCCT 60.179 50.000 17.81 0.00 36.25 3.36
82 83 0.966179 GCAATTCCGGGTTGTTCCTT 59.034 50.000 17.81 0.00 36.25 3.36
83 84 1.343142 GCAATTCCGGGTTGTTCCTTT 59.657 47.619 17.81 0.00 36.25 3.11
84 85 2.224185 GCAATTCCGGGTTGTTCCTTTT 60.224 45.455 17.81 0.00 36.25 2.27
85 86 3.389221 CAATTCCGGGTTGTTCCTTTTG 58.611 45.455 0.00 0.00 36.25 2.44
86 87 2.438800 TTCCGGGTTGTTCCTTTTGA 57.561 45.000 0.00 0.00 36.25 2.69
87 88 2.438800 TCCGGGTTGTTCCTTTTGAA 57.561 45.000 0.00 0.00 36.25 2.69
88 89 2.303175 TCCGGGTTGTTCCTTTTGAAG 58.697 47.619 0.00 0.00 32.37 3.02
98 99 2.162716 CTTTTGAAGGAGCCCGACG 58.837 57.895 0.00 0.00 0.00 5.12
99 100 0.320421 CTTTTGAAGGAGCCCGACGA 60.320 55.000 0.00 0.00 0.00 4.20
100 101 0.323629 TTTTGAAGGAGCCCGACGAT 59.676 50.000 0.00 0.00 0.00 3.73
101 102 0.323629 TTTGAAGGAGCCCGACGATT 59.676 50.000 0.00 0.00 0.00 3.34
102 103 0.391130 TTGAAGGAGCCCGACGATTG 60.391 55.000 0.00 0.00 0.00 2.67
103 104 1.521681 GAAGGAGCCCGACGATTGG 60.522 63.158 0.00 0.00 0.00 3.16
104 105 2.240162 GAAGGAGCCCGACGATTGGT 62.240 60.000 0.00 0.00 0.00 3.67
105 106 0.974010 AAGGAGCCCGACGATTGGTA 60.974 55.000 0.00 0.00 0.00 3.25
106 107 1.227176 GGAGCCCGACGATTGGTAC 60.227 63.158 0.00 0.00 0.00 3.34
107 108 1.673808 GGAGCCCGACGATTGGTACT 61.674 60.000 0.00 0.00 0.00 2.73
108 109 0.527817 GAGCCCGACGATTGGTACTG 60.528 60.000 0.00 0.00 0.00 2.74
109 110 2.171725 GCCCGACGATTGGTACTGC 61.172 63.158 0.00 0.00 0.00 4.40
110 111 1.876714 CCCGACGATTGGTACTGCG 60.877 63.158 0.00 0.00 0.00 5.18
111 112 1.876714 CCGACGATTGGTACTGCGG 60.877 63.158 0.00 0.00 0.00 5.69
112 113 1.138036 CGACGATTGGTACTGCGGA 59.862 57.895 0.00 0.00 0.00 5.54
113 114 0.866061 CGACGATTGGTACTGCGGAG 60.866 60.000 0.85 0.85 0.00 4.63
114 115 0.527817 GACGATTGGTACTGCGGAGG 60.528 60.000 9.36 0.00 0.00 4.30
115 116 1.227263 CGATTGGTACTGCGGAGGG 60.227 63.158 9.36 0.00 0.00 4.30
116 117 1.905512 GATTGGTACTGCGGAGGGT 59.094 57.895 9.36 0.00 0.00 4.34
117 118 0.462047 GATTGGTACTGCGGAGGGTG 60.462 60.000 9.36 0.00 0.00 4.61
118 119 0.907704 ATTGGTACTGCGGAGGGTGA 60.908 55.000 9.36 0.00 0.00 4.02
119 120 1.122632 TTGGTACTGCGGAGGGTGAA 61.123 55.000 9.36 0.00 0.00 3.18
120 121 1.079336 GGTACTGCGGAGGGTGAAC 60.079 63.158 9.36 0.00 0.00 3.18
121 122 1.445582 GTACTGCGGAGGGTGAACG 60.446 63.158 9.36 0.00 0.00 3.95
122 123 1.604308 TACTGCGGAGGGTGAACGA 60.604 57.895 9.36 0.00 0.00 3.85
123 124 1.870055 TACTGCGGAGGGTGAACGAC 61.870 60.000 9.36 0.00 0.00 4.34
124 125 3.934391 CTGCGGAGGGTGAACGACC 62.934 68.421 0.00 0.00 45.28 4.79
131 132 2.804090 GGTGAACGACCGACGAGC 60.804 66.667 0.00 1.79 45.77 5.03
132 133 2.804090 GTGAACGACCGACGAGCC 60.804 66.667 0.00 0.00 45.77 4.70
133 134 2.981909 TGAACGACCGACGAGCCT 60.982 61.111 0.00 0.00 45.77 4.58
134 135 2.257676 GAACGACCGACGAGCCTT 59.742 61.111 0.00 0.00 45.77 4.35
135 136 1.372623 GAACGACCGACGAGCCTTT 60.373 57.895 0.00 0.00 45.77 3.11
136 137 1.615107 GAACGACCGACGAGCCTTTG 61.615 60.000 0.00 0.00 45.77 2.77
137 138 3.479269 CGACCGACGAGCCTTTGC 61.479 66.667 0.00 0.00 45.77 3.68
166 167 4.408821 ATGGCTGCGGCGGAGAAA 62.409 61.111 32.74 18.72 39.81 2.52
167 168 3.918253 ATGGCTGCGGCGGAGAAAA 62.918 57.895 32.74 16.07 39.81 2.29
168 169 3.134127 GGCTGCGGCGGAGAAAAT 61.134 61.111 32.74 0.00 39.81 1.82
169 170 2.100991 GCTGCGGCGGAGAAAATG 59.899 61.111 32.74 5.56 0.00 2.32
170 171 2.793946 CTGCGGCGGAGAAAATGG 59.206 61.111 24.84 0.00 0.00 3.16
171 172 2.033448 TGCGGCGGAGAAAATGGT 59.967 55.556 9.78 0.00 0.00 3.55
172 173 1.586154 CTGCGGCGGAGAAAATGGTT 61.586 55.000 24.84 0.00 0.00 3.67
173 174 1.154035 GCGGCGGAGAAAATGGTTG 60.154 57.895 9.78 0.00 0.00 3.77
174 175 1.506262 CGGCGGAGAAAATGGTTGG 59.494 57.895 0.00 0.00 0.00 3.77
175 176 1.241315 CGGCGGAGAAAATGGTTGGT 61.241 55.000 0.00 0.00 0.00 3.67
176 177 0.243636 GGCGGAGAAAATGGTTGGTG 59.756 55.000 0.00 0.00 0.00 4.17
177 178 0.388520 GCGGAGAAAATGGTTGGTGC 60.389 55.000 0.00 0.00 0.00 5.01
183 184 0.757188 AAAATGGTTGGTGCGGGTCA 60.757 50.000 0.00 0.00 0.00 4.02
198 199 0.955919 GGTCAGCACAACCCTAGCAC 60.956 60.000 0.00 0.00 0.00 4.40
206 207 1.078710 AACCCTAGCACGAGGAGGT 59.921 57.895 0.00 0.00 39.15 3.85
217 221 3.664223 GAGGAGGTCGTGCGTCGTC 62.664 68.421 0.00 3.71 38.90 4.20
241 245 1.672030 CTGCATGACCTTGGCGACA 60.672 57.895 0.00 0.00 39.83 4.35
334 339 1.066143 TCTTCTTCGCCTGAATGGTCC 60.066 52.381 0.00 0.00 38.35 4.46
335 340 0.690192 TTCTTCGCCTGAATGGTCCA 59.310 50.000 0.00 0.00 38.35 4.02
336 341 0.911769 TCTTCGCCTGAATGGTCCAT 59.088 50.000 0.00 0.00 38.35 3.41
345 350 2.284515 GAATGGTCCATCGGGCCCTT 62.285 60.000 22.43 3.80 31.57 3.95
372 377 1.002684 GCCGATTCTATGTCGAGTCGT 60.003 52.381 13.12 0.00 40.26 4.34
375 380 2.037649 GATTCTATGTCGAGTCGTGCG 58.962 52.381 13.12 0.00 0.00 5.34
378 383 1.260825 TCTATGTCGAGTCGTGCGATC 59.739 52.381 13.12 0.00 40.19 3.69
419 424 0.179248 CGCGGTTTCTTCTTCTTCGC 60.179 55.000 0.00 0.00 38.56 4.70
420 425 0.166161 GCGGTTTCTTCTTCTTCGCC 59.834 55.000 0.00 0.00 36.35 5.54
444 449 4.715523 CGGGTGGTGGTGGCGATT 62.716 66.667 0.00 0.00 0.00 3.34
470 475 1.098129 GCAGATTTCTTCGGGGCTCC 61.098 60.000 0.00 0.00 0.00 4.70
510 515 3.431725 GAGCGCGGGAGGGTTTTG 61.432 66.667 8.83 0.00 45.69 2.44
523 528 2.310052 AGGGTTTTGGGGAATGAGAGAG 59.690 50.000 0.00 0.00 0.00 3.20
530 535 4.240881 TGGGGAATGAGAGAGAAAATGG 57.759 45.455 0.00 0.00 0.00 3.16
534 539 3.882288 GGAATGAGAGAGAAAATGGGAGC 59.118 47.826 0.00 0.00 0.00 4.70
535 540 4.521146 GAATGAGAGAGAAAATGGGAGCA 58.479 43.478 0.00 0.00 0.00 4.26
550 555 1.003355 AGCATTGTGTCCCCGACAG 60.003 57.895 0.00 0.00 43.57 3.51
552 557 1.676968 CATTGTGTCCCCGACAGGA 59.323 57.895 0.00 0.00 43.57 3.86
554 559 0.544357 ATTGTGTCCCCGACAGGAGA 60.544 55.000 0.00 0.00 43.57 3.71
555 560 0.761323 TTGTGTCCCCGACAGGAGAA 60.761 55.000 0.00 0.00 43.57 2.87
562 567 1.079543 CCGACAGGAGAAGCAGTGG 60.080 63.158 0.00 0.00 41.02 4.00
565 570 1.261480 GACAGGAGAAGCAGTGGAGA 58.739 55.000 0.00 0.00 0.00 3.71
572 577 2.037772 GAGAAGCAGTGGAGAACAAGGA 59.962 50.000 0.00 0.00 0.00 3.36
604 609 0.882042 CCATACAGGCGCTGTCCATC 60.882 60.000 7.64 0.00 41.21 3.51
607 612 2.004808 TACAGGCGCTGTCCATCTCG 62.005 60.000 7.64 0.00 41.21 4.04
644 649 5.355596 TCAAATTTGAGTTGGAAATGCGTT 58.644 33.333 16.91 0.00 32.50 4.84
645 650 5.233902 TCAAATTTGAGTTGGAAATGCGTTG 59.766 36.000 16.91 0.00 32.50 4.10
646 651 4.582701 ATTTGAGTTGGAAATGCGTTGA 57.417 36.364 0.00 0.00 0.00 3.18
649 654 1.529438 GAGTTGGAAATGCGTTGACGA 59.471 47.619 7.85 0.00 43.02 4.20
650 655 1.263217 AGTTGGAAATGCGTTGACGAC 59.737 47.619 7.85 0.00 43.02 4.34
664 669 1.000731 TGACGACGGATAAAAACGGGT 59.999 47.619 0.00 0.00 0.00 5.28
665 670 1.391144 GACGACGGATAAAAACGGGTG 59.609 52.381 0.00 0.00 0.00 4.61
677 682 0.744281 AACGGGTGTTTGGCTCTTTG 59.256 50.000 0.00 0.00 33.53 2.77
679 684 1.007387 GGGTGTTTGGCTCTTTGCG 60.007 57.895 0.00 0.00 44.05 4.85
680 685 1.661509 GGTGTTTGGCTCTTTGCGC 60.662 57.895 0.00 0.00 44.05 6.09
681 686 2.010817 GTGTTTGGCTCTTTGCGCG 61.011 57.895 0.00 0.00 44.05 6.86
708 738 0.250684 TCTCAAGCGACCATTTGGCA 60.251 50.000 0.00 0.00 39.32 4.92
709 739 0.109597 CTCAAGCGACCATTTGGCAC 60.110 55.000 0.00 0.00 39.32 5.01
898 933 2.768527 CCTACTCCAGCAATCTTCTCCA 59.231 50.000 0.00 0.00 0.00 3.86
902 937 1.492176 TCCAGCAATCTTCTCCATCCC 59.508 52.381 0.00 0.00 0.00 3.85
906 941 1.202867 GCAATCTTCTCCATCCCCCTC 60.203 57.143 0.00 0.00 0.00 4.30
957 997 1.395826 ATCTTCTTCCCCGCCTCTCG 61.396 60.000 0.00 0.00 38.08 4.04
983 1023 1.202592 GCCTCTGCTTTCTACCTAGCC 60.203 57.143 0.00 0.00 36.56 3.93
1041 1081 2.032528 CTTCTTCCTGTGGCGGCA 59.967 61.111 7.97 7.97 0.00 5.69
1113 1153 2.418910 CGACGAGCTGGATGGGAGT 61.419 63.158 1.44 0.00 0.00 3.85
1221 1261 3.478394 GTGAATCGCGAGCGTGCA 61.478 61.111 16.66 0.00 40.74 4.57
1229 1269 1.129624 TCGCGAGCGTGCAAATAATTT 59.870 42.857 17.24 0.00 40.74 1.82
1522 1573 0.109458 GCATATGTCCCATGCATGCG 60.109 55.000 21.69 13.41 46.47 4.73
1523 1574 1.241165 CATATGTCCCATGCATGCGT 58.759 50.000 21.69 10.53 0.00 5.24
1524 1575 1.198408 CATATGTCCCATGCATGCGTC 59.802 52.381 21.69 11.22 0.00 5.19
1525 1576 0.534877 TATGTCCCATGCATGCGTCC 60.535 55.000 21.69 8.71 0.00 4.79
1526 1577 3.576356 GTCCCATGCATGCGTCCG 61.576 66.667 21.69 7.04 0.00 4.79
1527 1578 3.780173 TCCCATGCATGCGTCCGA 61.780 61.111 21.69 5.36 0.00 4.55
1528 1579 3.274586 CCCATGCATGCGTCCGAG 61.275 66.667 21.69 5.54 0.00 4.63
1685 1736 2.919229 GTCGGTACACCATTAGTTGTCG 59.081 50.000 0.00 0.00 35.14 4.35
1703 1754 8.094798 AGTTGTCGTATGTACACATGATTTTT 57.905 30.769 0.00 0.00 37.15 1.94
1706 1757 6.092944 TGTCGTATGTACACATGATTTTTCCC 59.907 38.462 0.00 0.00 37.15 3.97
1707 1758 6.092944 GTCGTATGTACACATGATTTTTCCCA 59.907 38.462 0.00 0.00 37.15 4.37
1709 1760 6.128145 CGTATGTACACATGATTTTTCCCACA 60.128 38.462 0.00 0.00 37.15 4.17
1750 1801 6.047231 AGCCTGTTCGGTTCATTATAGTTAC 58.953 40.000 0.00 0.00 34.25 2.50
1751 1802 6.047231 GCCTGTTCGGTTCATTATAGTTACT 58.953 40.000 0.00 0.00 34.25 2.24
1752 1803 6.200475 GCCTGTTCGGTTCATTATAGTTACTC 59.800 42.308 0.00 0.00 34.25 2.59
1753 1804 6.700520 CCTGTTCGGTTCATTATAGTTACTCC 59.299 42.308 0.00 0.00 0.00 3.85
1754 1805 6.576185 TGTTCGGTTCATTATAGTTACTCCC 58.424 40.000 0.00 0.00 0.00 4.30
1755 1806 6.381994 TGTTCGGTTCATTATAGTTACTCCCT 59.618 38.462 0.00 0.00 0.00 4.20
1756 1807 6.645790 TCGGTTCATTATAGTTACTCCCTC 57.354 41.667 0.00 0.00 0.00 4.30
1757 1808 5.537674 TCGGTTCATTATAGTTACTCCCTCC 59.462 44.000 0.00 0.00 0.00 4.30
1758 1809 5.564259 CGGTTCATTATAGTTACTCCCTCCG 60.564 48.000 0.00 0.00 0.00 4.63
1759 1810 5.303845 GGTTCATTATAGTTACTCCCTCCGT 59.696 44.000 0.00 0.00 0.00 4.69
1760 1811 6.183360 GGTTCATTATAGTTACTCCCTCCGTT 60.183 42.308 0.00 0.00 0.00 4.44
1761 1812 6.645790 TCATTATAGTTACTCCCTCCGTTC 57.354 41.667 0.00 0.00 0.00 3.95
1762 1813 5.537674 TCATTATAGTTACTCCCTCCGTTCC 59.462 44.000 0.00 0.00 0.00 3.62
1763 1814 2.905415 TAGTTACTCCCTCCGTTCCA 57.095 50.000 0.00 0.00 0.00 3.53
1764 1815 2.019807 AGTTACTCCCTCCGTTCCAA 57.980 50.000 0.00 0.00 0.00 3.53
1765 1816 2.332117 AGTTACTCCCTCCGTTCCAAA 58.668 47.619 0.00 0.00 0.00 3.28
1766 1817 2.910977 AGTTACTCCCTCCGTTCCAAAT 59.089 45.455 0.00 0.00 0.00 2.32
1767 1818 3.329814 AGTTACTCCCTCCGTTCCAAATT 59.670 43.478 0.00 0.00 0.00 1.82
1768 1819 4.533311 AGTTACTCCCTCCGTTCCAAATTA 59.467 41.667 0.00 0.00 0.00 1.40
1769 1820 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
1770 1821 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
1771 1822 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
1772 1823 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
1773 1824 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
1774 1825 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
1775 1826 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
1776 1827 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
1777 1828 1.722464 CGTTCCAAATTACTCGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
1778 1829 2.222508 CGTTCCAAATTACTCGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
1779 1830 2.991190 GTTCCAAATTACTCGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
1780 1831 3.306917 TCCAAATTACTCGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
1781 1832 3.655486 TCCAAATTACTCGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
1782 1833 4.250464 TCCAAATTACTCGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
1783 1834 4.092821 TCCAAATTACTCGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
1784 1835 4.334443 CAAATTACTCGTCGCAGAAATGG 58.666 43.478 0.00 0.00 39.69 3.16
1785 1836 3.520290 ATTACTCGTCGCAGAAATGGA 57.480 42.857 0.00 0.00 39.69 3.41
1786 1837 3.520290 TTACTCGTCGCAGAAATGGAT 57.480 42.857 0.00 0.00 39.69 3.41
1787 1838 1.645034 ACTCGTCGCAGAAATGGATG 58.355 50.000 0.00 0.00 39.69 3.51
1788 1839 1.066858 ACTCGTCGCAGAAATGGATGT 60.067 47.619 0.00 0.00 39.69 3.06
1789 1840 2.165641 ACTCGTCGCAGAAATGGATGTA 59.834 45.455 0.00 0.00 39.69 2.29
1790 1841 3.181475 ACTCGTCGCAGAAATGGATGTAT 60.181 43.478 0.00 0.00 39.69 2.29
1791 1842 3.381045 TCGTCGCAGAAATGGATGTATC 58.619 45.455 0.00 0.00 39.69 2.24
1792 1843 3.068165 TCGTCGCAGAAATGGATGTATCT 59.932 43.478 0.00 0.00 39.69 1.98
1793 1844 4.277423 TCGTCGCAGAAATGGATGTATCTA 59.723 41.667 0.00 0.00 39.69 1.98
1794 1845 4.618912 CGTCGCAGAAATGGATGTATCTAG 59.381 45.833 0.00 0.00 39.69 2.43
1795 1846 5.562890 CGTCGCAGAAATGGATGTATCTAGA 60.563 44.000 0.00 0.00 39.69 2.43
1796 1847 6.216569 GTCGCAGAAATGGATGTATCTAGAA 58.783 40.000 0.00 0.00 39.69 2.10
1797 1848 6.144724 GTCGCAGAAATGGATGTATCTAGAAC 59.855 42.308 0.00 0.00 39.69 3.01
1798 1849 6.040955 TCGCAGAAATGGATGTATCTAGAACT 59.959 38.462 0.00 0.00 0.00 3.01
1799 1850 7.230712 TCGCAGAAATGGATGTATCTAGAACTA 59.769 37.037 0.00 0.00 0.00 2.24
1800 1851 7.867909 CGCAGAAATGGATGTATCTAGAACTAA 59.132 37.037 0.00 0.00 0.00 2.24
1801 1852 9.547753 GCAGAAATGGATGTATCTAGAACTAAA 57.452 33.333 0.00 0.00 0.00 1.85
1827 1878 6.537453 ACATCTAGATACATCCATACCTGC 57.463 41.667 4.54 0.00 0.00 4.85
1828 1879 5.126222 ACATCTAGATACATCCATACCTGCG 59.874 44.000 4.54 0.00 0.00 5.18
1829 1880 4.918588 TCTAGATACATCCATACCTGCGA 58.081 43.478 0.00 0.00 0.00 5.10
1830 1881 3.944055 AGATACATCCATACCTGCGAC 57.056 47.619 0.00 0.00 0.00 5.19
1831 1882 3.230976 AGATACATCCATACCTGCGACA 58.769 45.455 0.00 0.00 0.00 4.35
1832 1883 3.641436 AGATACATCCATACCTGCGACAA 59.359 43.478 0.00 0.00 0.00 3.18
1833 1884 2.315925 ACATCCATACCTGCGACAAG 57.684 50.000 0.00 0.00 0.00 3.16
1834 1885 1.555075 ACATCCATACCTGCGACAAGT 59.445 47.619 0.00 0.00 0.00 3.16
1835 1886 2.764010 ACATCCATACCTGCGACAAGTA 59.236 45.455 0.00 0.00 0.00 2.24
1836 1887 3.196901 ACATCCATACCTGCGACAAGTAA 59.803 43.478 0.00 0.00 0.00 2.24
1837 1888 4.141711 ACATCCATACCTGCGACAAGTAAT 60.142 41.667 0.00 0.00 0.00 1.89
1838 1889 4.481368 TCCATACCTGCGACAAGTAATT 57.519 40.909 0.00 0.00 0.00 1.40
1839 1890 4.439057 TCCATACCTGCGACAAGTAATTC 58.561 43.478 0.00 0.00 0.00 2.17
1840 1891 3.245284 CCATACCTGCGACAAGTAATTCG 59.755 47.826 0.00 0.00 38.31 3.34
1841 1892 1.722011 ACCTGCGACAAGTAATTCGG 58.278 50.000 0.00 0.00 35.73 4.30
1842 1893 1.274167 ACCTGCGACAAGTAATTCGGA 59.726 47.619 0.00 0.00 35.73 4.55
1843 1894 2.289195 ACCTGCGACAAGTAATTCGGAA 60.289 45.455 0.00 0.00 35.02 4.30
1844 1895 2.093783 CCTGCGACAAGTAATTCGGAAC 59.906 50.000 0.00 0.00 35.02 3.62
1845 1896 2.734606 CTGCGACAAGTAATTCGGAACA 59.265 45.455 0.00 0.00 35.02 3.18
1846 1897 2.734606 TGCGACAAGTAATTCGGAACAG 59.265 45.455 0.00 0.00 35.73 3.16
1847 1898 2.991190 GCGACAAGTAATTCGGAACAGA 59.009 45.455 0.00 0.00 35.73 3.41
1848 1899 3.060895 GCGACAAGTAATTCGGAACAGAG 59.939 47.826 0.00 0.00 35.73 3.35
1849 1900 3.612860 CGACAAGTAATTCGGAACAGAGG 59.387 47.826 0.00 0.00 0.00 3.69
1850 1901 3.933332 GACAAGTAATTCGGAACAGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
1851 1902 3.581332 ACAAGTAATTCGGAACAGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
1852 1903 4.184629 CAAGTAATTCGGAACAGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
1853 1904 3.442076 AGTAATTCGGAACAGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
1854 1905 4.607239 AGTAATTCGGAACAGAGGGAGTA 58.393 43.478 0.00 0.00 0.00 2.59
1879 1930 2.930826 TTGGTCTCCTCTGTTTGTCC 57.069 50.000 0.00 0.00 0.00 4.02
1903 1954 5.591099 GTTTCATGTGGAGATTGTTGTGTT 58.409 37.500 0.00 0.00 0.00 3.32
1926 1977 7.041167 TGTTCTTCTACTCAACCAACATCATTG 60.041 37.037 0.00 0.00 0.00 2.82
2140 2191 2.771943 TGAAGAGGCCGATTGGTTCTAT 59.228 45.455 0.00 0.00 37.67 1.98
2320 2371 1.462616 TTGCGGCATGCTTTCACTAT 58.537 45.000 18.92 0.00 46.63 2.12
2330 2381 4.487714 TGCTTTCACTATCAGGTAAGGG 57.512 45.455 0.00 0.00 0.00 3.95
2334 2385 6.842280 TGCTTTCACTATCAGGTAAGGGTATA 59.158 38.462 0.00 0.00 0.00 1.47
2343 2394 4.768968 TCAGGTAAGGGTATATCGCCTTAC 59.231 45.833 15.22 15.22 42.48 2.34
2350 2401 3.586892 GGTATATCGCCTTACCTGCTTC 58.413 50.000 0.00 0.00 35.89 3.86
2351 2402 2.440539 ATATCGCCTTACCTGCTTCG 57.559 50.000 0.00 0.00 0.00 3.79
2357 2408 1.066358 GCCTTACCTGCTTCGTACCTT 60.066 52.381 0.00 0.00 0.00 3.50
2360 2411 2.226962 TACCTGCTTCGTACCTTCCT 57.773 50.000 0.00 0.00 0.00 3.36
2364 2415 3.146847 CCTGCTTCGTACCTTCCTTTTT 58.853 45.455 0.00 0.00 0.00 1.94
2369 2420 4.320275 GCTTCGTACCTTCCTTTTTCTTGG 60.320 45.833 0.00 0.00 0.00 3.61
2370 2421 4.426736 TCGTACCTTCCTTTTTCTTGGT 57.573 40.909 0.00 0.00 0.00 3.67
2374 2425 6.267471 TCGTACCTTCCTTTTTCTTGGTACTA 59.733 38.462 15.22 4.87 44.35 1.82
2376 2427 6.511017 ACCTTCCTTTTTCTTGGTACTACT 57.489 37.500 0.00 0.00 0.00 2.57
2392 2443 3.090037 ACTACTACAGCTGGTCACGATT 58.910 45.455 19.93 0.00 0.00 3.34
2429 2480 5.064325 CAGTAAAACTTTGAGCCGGTATACC 59.936 44.000 12.27 12.27 0.00 2.73
2456 2507 2.294233 TCAGCAGCCATTTGTTCTGAAC 59.706 45.455 13.49 13.49 0.00 3.18
2466 2517 7.394359 AGCCATTTGTTCTGAACTTATATGTGT 59.606 33.333 20.18 6.31 0.00 3.72
2586 2637 3.831323 TCATGTTTGCTTGAAAGAGGGA 58.169 40.909 0.00 0.00 0.00 4.20
2595 2646 6.814954 TGCTTGAAAGAGGGATCTATTACT 57.185 37.500 0.00 0.00 0.00 2.24
2637 2688 3.503363 CACAGAAAATGCAGGCTCACTTA 59.497 43.478 0.00 0.00 0.00 2.24
2668 2719 3.262151 TGATACACCCCGTTCAATCTTCA 59.738 43.478 0.00 0.00 0.00 3.02
2747 2802 4.698575 GCAAGGTAAGAATACTCCCAGAG 58.301 47.826 0.00 0.00 35.52 3.35
2886 2974 4.265056 ACCGAACACCCTGCCACC 62.265 66.667 0.00 0.00 0.00 4.61
3099 3187 4.855388 CCAAAGCTTGATTCAATTCTCACG 59.145 41.667 0.00 0.00 0.00 4.35
3355 3443 3.418684 TCCTTGTAAGACCTGGCTTTC 57.581 47.619 8.33 5.08 0.00 2.62
3474 3593 9.645059 CTCTGATGTCACTCAACTAAAAATAGA 57.355 33.333 0.00 0.00 0.00 1.98
3697 3983 6.556495 TCCATCTCCTTAAGCTCATAGTTCAT 59.444 38.462 0.00 0.00 0.00 2.57
4045 4331 2.866762 GAGCACCGCTTAAGAAGTATGG 59.133 50.000 6.67 0.07 39.88 2.74
4061 4347 2.754946 ATGGCAAGCATGACCAAAAG 57.245 45.000 8.72 0.00 36.67 2.27
4091 4377 1.899437 TTCATGCCTGGGAGGTCGAC 61.899 60.000 7.13 7.13 37.80 4.20
4121 4407 5.365619 AGTCATTTTCTTGGTACGACAACT 58.634 37.500 0.00 0.00 0.00 3.16
4145 4431 5.604758 TGTGGAGAGATACATGGAGAAAG 57.395 43.478 0.00 0.00 0.00 2.62
4181 4468 4.389374 GTGTTCATTGACTTGGAGAAGGA 58.611 43.478 0.00 0.00 32.95 3.36
4214 4501 1.305219 CCGCGGAATGTCATGTGGTT 61.305 55.000 24.07 0.00 0.00 3.67
4220 4507 1.203052 GAATGTCATGTGGTTGGCCTG 59.797 52.381 3.32 0.00 35.27 4.85
4246 4533 0.746659 ACACAAAGTCCCAGCAAAGC 59.253 50.000 0.00 0.00 0.00 3.51
4271 4558 7.475015 CACATTACCCTCATTAAGAACATGTG 58.525 38.462 0.00 0.00 0.00 3.21
4272 4559 6.095440 ACATTACCCTCATTAAGAACATGTGC 59.905 38.462 0.00 0.00 0.00 4.57
4294 4581 5.212194 GCGATAATGTTGTGACAAGTGTTT 58.788 37.500 0.00 0.00 39.66 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.372795 CTGGCTTTATTACCGGCGA 57.627 52.632 9.30 0.00 0.00 5.54
3 4 0.463116 ACCGCTGGCTTTATTACCGG 60.463 55.000 0.00 0.00 40.01 5.28
4 5 0.935196 GACCGCTGGCTTTATTACCG 59.065 55.000 0.00 0.00 0.00 4.02
5 6 0.935196 CGACCGCTGGCTTTATTACC 59.065 55.000 0.00 0.00 0.00 2.85
6 7 0.935196 CCGACCGCTGGCTTTATTAC 59.065 55.000 0.00 0.00 0.00 1.89
7 8 3.372795 CCGACCGCTGGCTTTATTA 57.627 52.632 0.00 0.00 0.00 0.98
8 9 4.218722 CCGACCGCTGGCTTTATT 57.781 55.556 0.00 0.00 0.00 1.40
15 16 4.473520 AAGGATGCCGACCGCTGG 62.474 66.667 0.00 0.00 38.78 4.85
16 17 3.197790 CAAGGATGCCGACCGCTG 61.198 66.667 0.00 0.00 38.78 5.18
26 27 1.259609 TTTTCAGGCTGGCAAGGATG 58.740 50.000 15.73 0.00 0.00 3.51
27 28 1.897802 CTTTTTCAGGCTGGCAAGGAT 59.102 47.619 15.73 0.00 0.00 3.24
28 29 1.133513 TCTTTTTCAGGCTGGCAAGGA 60.134 47.619 15.73 10.55 0.00 3.36
29 30 1.331214 TCTTTTTCAGGCTGGCAAGG 58.669 50.000 15.73 8.36 0.00 3.61
30 31 2.546584 GGTTCTTTTTCAGGCTGGCAAG 60.547 50.000 15.73 13.67 0.00 4.01
31 32 1.412343 GGTTCTTTTTCAGGCTGGCAA 59.588 47.619 15.73 5.28 0.00 4.52
32 33 1.039856 GGTTCTTTTTCAGGCTGGCA 58.960 50.000 15.73 0.00 0.00 4.92
33 34 1.039856 TGGTTCTTTTTCAGGCTGGC 58.960 50.000 15.73 0.00 0.00 4.85
34 35 1.341209 GGTGGTTCTTTTTCAGGCTGG 59.659 52.381 15.73 0.00 0.00 4.85
35 36 1.341209 GGGTGGTTCTTTTTCAGGCTG 59.659 52.381 8.58 8.58 0.00 4.85
36 37 1.217942 AGGGTGGTTCTTTTTCAGGCT 59.782 47.619 0.00 0.00 0.00 4.58
37 38 1.704641 AGGGTGGTTCTTTTTCAGGC 58.295 50.000 0.00 0.00 0.00 4.85
38 39 4.647399 TGTTTAGGGTGGTTCTTTTTCAGG 59.353 41.667 0.00 0.00 0.00 3.86
39 40 5.845391 TGTTTAGGGTGGTTCTTTTTCAG 57.155 39.130 0.00 0.00 0.00 3.02
40 41 5.452636 GCATGTTTAGGGTGGTTCTTTTTCA 60.453 40.000 0.00 0.00 0.00 2.69
41 42 4.988540 GCATGTTTAGGGTGGTTCTTTTTC 59.011 41.667 0.00 0.00 0.00 2.29
42 43 4.407296 TGCATGTTTAGGGTGGTTCTTTTT 59.593 37.500 0.00 0.00 0.00 1.94
43 44 3.964031 TGCATGTTTAGGGTGGTTCTTTT 59.036 39.130 0.00 0.00 0.00 2.27
44 45 3.571590 TGCATGTTTAGGGTGGTTCTTT 58.428 40.909 0.00 0.00 0.00 2.52
45 46 3.237268 TGCATGTTTAGGGTGGTTCTT 57.763 42.857 0.00 0.00 0.00 2.52
46 47 2.969821 TGCATGTTTAGGGTGGTTCT 57.030 45.000 0.00 0.00 0.00 3.01
47 48 4.494484 GAATTGCATGTTTAGGGTGGTTC 58.506 43.478 0.00 0.00 0.00 3.62
48 49 3.260632 GGAATTGCATGTTTAGGGTGGTT 59.739 43.478 0.00 0.00 0.00 3.67
49 50 2.831526 GGAATTGCATGTTTAGGGTGGT 59.168 45.455 0.00 0.00 0.00 4.16
50 51 2.159254 CGGAATTGCATGTTTAGGGTGG 60.159 50.000 0.00 0.00 0.00 4.61
51 52 2.159254 CCGGAATTGCATGTTTAGGGTG 60.159 50.000 0.00 0.00 0.00 4.61
52 53 2.099405 CCGGAATTGCATGTTTAGGGT 58.901 47.619 0.00 0.00 0.00 4.34
53 54 1.408702 CCCGGAATTGCATGTTTAGGG 59.591 52.381 0.73 0.00 0.00 3.53
54 55 2.099405 ACCCGGAATTGCATGTTTAGG 58.901 47.619 0.73 0.00 0.00 2.69
55 56 3.056891 ACAACCCGGAATTGCATGTTTAG 60.057 43.478 15.93 0.00 0.00 1.85
56 57 2.894126 ACAACCCGGAATTGCATGTTTA 59.106 40.909 15.93 0.00 0.00 2.01
57 58 1.691434 ACAACCCGGAATTGCATGTTT 59.309 42.857 15.93 0.00 0.00 2.83
58 59 1.337118 ACAACCCGGAATTGCATGTT 58.663 45.000 15.93 0.96 0.00 2.71
59 60 1.272212 GAACAACCCGGAATTGCATGT 59.728 47.619 15.93 2.48 0.00 3.21
60 61 1.404047 GGAACAACCCGGAATTGCATG 60.404 52.381 15.93 0.00 0.00 4.06
61 62 0.894835 GGAACAACCCGGAATTGCAT 59.105 50.000 15.93 7.44 0.00 3.96
62 63 0.178975 AGGAACAACCCGGAATTGCA 60.179 50.000 15.93 0.00 40.05 4.08
63 64 0.966179 AAGGAACAACCCGGAATTGC 59.034 50.000 15.93 4.72 40.05 3.56
64 65 3.068873 TCAAAAGGAACAACCCGGAATTG 59.931 43.478 0.73 10.19 40.05 2.32
65 66 3.301274 TCAAAAGGAACAACCCGGAATT 58.699 40.909 0.73 0.00 40.05 2.17
66 67 2.952116 TCAAAAGGAACAACCCGGAAT 58.048 42.857 0.73 0.00 40.05 3.01
67 68 2.438800 TCAAAAGGAACAACCCGGAA 57.561 45.000 0.73 0.00 40.05 4.30
68 69 2.303175 CTTCAAAAGGAACAACCCGGA 58.697 47.619 0.73 0.00 40.05 5.14
69 70 2.793278 CTTCAAAAGGAACAACCCGG 57.207 50.000 0.00 0.00 40.05 5.73
80 81 0.320421 TCGTCGGGCTCCTTCAAAAG 60.320 55.000 0.00 0.00 0.00 2.27
81 82 0.323629 ATCGTCGGGCTCCTTCAAAA 59.676 50.000 0.00 0.00 0.00 2.44
82 83 0.323629 AATCGTCGGGCTCCTTCAAA 59.676 50.000 0.00 0.00 0.00 2.69
83 84 0.391130 CAATCGTCGGGCTCCTTCAA 60.391 55.000 0.00 0.00 0.00 2.69
84 85 1.218047 CAATCGTCGGGCTCCTTCA 59.782 57.895 0.00 0.00 0.00 3.02
85 86 1.521681 CCAATCGTCGGGCTCCTTC 60.522 63.158 0.00 0.00 0.00 3.46
86 87 0.974010 TACCAATCGTCGGGCTCCTT 60.974 55.000 0.00 0.00 0.00 3.36
87 88 1.380785 TACCAATCGTCGGGCTCCT 60.381 57.895 0.00 0.00 0.00 3.69
88 89 1.227176 GTACCAATCGTCGGGCTCC 60.227 63.158 0.00 0.00 0.00 4.70
89 90 0.527817 CAGTACCAATCGTCGGGCTC 60.528 60.000 0.00 0.00 0.00 4.70
90 91 1.515954 CAGTACCAATCGTCGGGCT 59.484 57.895 0.00 0.00 0.00 5.19
91 92 2.171725 GCAGTACCAATCGTCGGGC 61.172 63.158 0.00 0.00 0.00 6.13
92 93 1.876714 CGCAGTACCAATCGTCGGG 60.877 63.158 0.00 0.00 0.00 5.14
93 94 1.876714 CCGCAGTACCAATCGTCGG 60.877 63.158 0.00 0.00 0.00 4.79
94 95 0.866061 CTCCGCAGTACCAATCGTCG 60.866 60.000 0.00 0.00 0.00 5.12
95 96 0.527817 CCTCCGCAGTACCAATCGTC 60.528 60.000 0.00 0.00 0.00 4.20
96 97 1.515954 CCTCCGCAGTACCAATCGT 59.484 57.895 0.00 0.00 0.00 3.73
97 98 1.227263 CCCTCCGCAGTACCAATCG 60.227 63.158 0.00 0.00 0.00 3.34
98 99 0.462047 CACCCTCCGCAGTACCAATC 60.462 60.000 0.00 0.00 0.00 2.67
99 100 0.907704 TCACCCTCCGCAGTACCAAT 60.908 55.000 0.00 0.00 0.00 3.16
100 101 1.122632 TTCACCCTCCGCAGTACCAA 61.123 55.000 0.00 0.00 0.00 3.67
101 102 1.534476 TTCACCCTCCGCAGTACCA 60.534 57.895 0.00 0.00 0.00 3.25
102 103 1.079336 GTTCACCCTCCGCAGTACC 60.079 63.158 0.00 0.00 0.00 3.34
103 104 1.445582 CGTTCACCCTCCGCAGTAC 60.446 63.158 0.00 0.00 0.00 2.73
104 105 1.604308 TCGTTCACCCTCCGCAGTA 60.604 57.895 0.00 0.00 0.00 2.74
105 106 2.915659 TCGTTCACCCTCCGCAGT 60.916 61.111 0.00 0.00 0.00 4.40
106 107 2.432628 GTCGTTCACCCTCCGCAG 60.433 66.667 0.00 0.00 0.00 5.18
107 108 3.998672 GGTCGTTCACCCTCCGCA 61.999 66.667 0.00 0.00 39.69 5.69
109 110 3.367743 TCGGTCGTTCACCCTCCG 61.368 66.667 0.00 0.00 43.31 4.63
110 111 2.260743 GTCGGTCGTTCACCCTCC 59.739 66.667 0.00 0.00 43.31 4.30
111 112 2.126580 CGTCGGTCGTTCACCCTC 60.127 66.667 0.00 0.00 43.31 4.30
112 113 2.595463 TCGTCGGTCGTTCACCCT 60.595 61.111 0.00 0.00 43.31 4.34
113 114 2.126580 CTCGTCGGTCGTTCACCC 60.127 66.667 0.00 0.00 43.31 4.61
114 115 2.804090 GCTCGTCGGTCGTTCACC 60.804 66.667 0.00 0.00 42.69 4.02
115 116 2.744307 AAGGCTCGTCGGTCGTTCAC 62.744 60.000 0.00 0.00 40.80 3.18
116 117 2.079020 AAAGGCTCGTCGGTCGTTCA 62.079 55.000 0.00 0.00 40.80 3.18
117 118 1.372623 AAAGGCTCGTCGGTCGTTC 60.373 57.895 0.00 0.00 40.80 3.95
118 119 1.663702 CAAAGGCTCGTCGGTCGTT 60.664 57.895 0.00 0.00 40.80 3.85
119 120 2.049433 CAAAGGCTCGTCGGTCGT 60.049 61.111 0.00 0.00 40.80 4.34
120 121 3.479269 GCAAAGGCTCGTCGGTCG 61.479 66.667 0.00 0.00 41.41 4.79
149 150 3.918253 TTTTCTCCGCCGCAGCCAT 62.918 57.895 0.00 0.00 34.57 4.40
150 151 3.918253 ATTTTCTCCGCCGCAGCCA 62.918 57.895 0.00 0.00 34.57 4.75
151 152 3.134127 ATTTTCTCCGCCGCAGCC 61.134 61.111 0.00 0.00 34.57 4.85
152 153 2.100991 CATTTTCTCCGCCGCAGC 59.899 61.111 0.00 0.00 0.00 5.25
153 154 1.586154 AACCATTTTCTCCGCCGCAG 61.586 55.000 0.00 0.00 0.00 5.18
154 155 1.602323 AACCATTTTCTCCGCCGCA 60.602 52.632 0.00 0.00 0.00 5.69
155 156 1.154035 CAACCATTTTCTCCGCCGC 60.154 57.895 0.00 0.00 0.00 6.53
156 157 1.241315 ACCAACCATTTTCTCCGCCG 61.241 55.000 0.00 0.00 0.00 6.46
157 158 0.243636 CACCAACCATTTTCTCCGCC 59.756 55.000 0.00 0.00 0.00 6.13
158 159 0.388520 GCACCAACCATTTTCTCCGC 60.389 55.000 0.00 0.00 0.00 5.54
159 160 0.109781 CGCACCAACCATTTTCTCCG 60.110 55.000 0.00 0.00 0.00 4.63
160 161 0.243636 CCGCACCAACCATTTTCTCC 59.756 55.000 0.00 0.00 0.00 3.71
161 162 0.243636 CCCGCACCAACCATTTTCTC 59.756 55.000 0.00 0.00 0.00 2.87
162 163 0.469144 ACCCGCACCAACCATTTTCT 60.469 50.000 0.00 0.00 0.00 2.52
163 164 0.038618 GACCCGCACCAACCATTTTC 60.039 55.000 0.00 0.00 0.00 2.29
164 165 0.757188 TGACCCGCACCAACCATTTT 60.757 50.000 0.00 0.00 0.00 1.82
165 166 1.152652 TGACCCGCACCAACCATTT 60.153 52.632 0.00 0.00 0.00 2.32
166 167 1.603455 CTGACCCGCACCAACCATT 60.603 57.895 0.00 0.00 0.00 3.16
167 168 2.034066 CTGACCCGCACCAACCAT 59.966 61.111 0.00 0.00 0.00 3.55
168 169 4.947147 GCTGACCCGCACCAACCA 62.947 66.667 0.00 0.00 0.00 3.67
169 170 4.947147 TGCTGACCCGCACCAACC 62.947 66.667 0.00 0.00 34.44 3.77
175 176 4.947147 GGGTTGTGCTGACCCGCA 62.947 66.667 6.94 0.00 46.71 5.69
183 184 1.293498 CTCGTGCTAGGGTTGTGCT 59.707 57.895 0.00 0.00 0.00 4.40
227 231 1.315257 GCCATTGTCGCCAAGGTCAT 61.315 55.000 0.00 0.00 33.17 3.06
230 234 2.676471 GGCCATTGTCGCCAAGGT 60.676 61.111 0.00 0.00 46.27 3.50
297 302 1.912417 AGATAGCCGCTATCGACCTT 58.088 50.000 27.17 12.43 45.19 3.50
334 339 1.153086 CCAAGAGAAGGGCCCGATG 60.153 63.158 18.44 10.14 0.00 3.84
335 340 3.049080 GCCAAGAGAAGGGCCCGAT 62.049 63.158 18.44 10.01 44.53 4.18
336 341 3.717294 GCCAAGAGAAGGGCCCGA 61.717 66.667 18.44 0.00 44.53 5.14
345 350 2.034685 CGACATAGAATCGGCCAAGAGA 59.965 50.000 2.24 0.00 35.92 3.10
396 401 0.666577 AGAAGAAGAAACCGCGGTCG 60.667 55.000 34.29 4.99 0.00 4.79
442 447 2.369394 GAAGAAATCTGCCGACCCAAT 58.631 47.619 0.00 0.00 0.00 3.16
444 449 0.391130 CGAAGAAATCTGCCGACCCA 60.391 55.000 0.00 0.00 0.00 4.51
497 502 2.798445 ATTCCCCAAAACCCTCCCGC 62.798 60.000 0.00 0.00 0.00 6.13
510 515 3.203040 TCCCATTTTCTCTCTCATTCCCC 59.797 47.826 0.00 0.00 0.00 4.81
511 516 4.459330 CTCCCATTTTCTCTCTCATTCCC 58.541 47.826 0.00 0.00 0.00 3.97
523 528 2.094026 GGGACACAATGCTCCCATTTTC 60.094 50.000 10.83 0.00 45.22 2.29
530 535 1.745489 GTCGGGGACACAATGCTCC 60.745 63.158 0.00 0.00 32.09 4.70
534 539 0.391661 CTCCTGTCGGGGACACAATG 60.392 60.000 0.00 0.00 37.67 2.82
535 540 0.544357 TCTCCTGTCGGGGACACAAT 60.544 55.000 0.00 0.00 37.67 2.71
550 555 2.421619 CTTGTTCTCCACTGCTTCTCC 58.578 52.381 0.00 0.00 0.00 3.71
552 557 2.050144 TCCTTGTTCTCCACTGCTTCT 58.950 47.619 0.00 0.00 0.00 2.85
554 559 1.541233 CGTCCTTGTTCTCCACTGCTT 60.541 52.381 0.00 0.00 0.00 3.91
555 560 0.034059 CGTCCTTGTTCTCCACTGCT 59.966 55.000 0.00 0.00 0.00 4.24
562 567 2.142641 GACGCACGTCCTTGTTCTC 58.857 57.895 12.04 0.00 39.08 2.87
582 587 3.391665 GACAGCGCCTGTATGGGCT 62.392 63.158 2.29 0.00 45.44 5.19
591 596 2.755876 TCGAGATGGACAGCGCCT 60.756 61.111 2.29 0.00 0.00 5.52
621 626 4.942852 ACGCATTTCCAACTCAAATTTGA 58.057 34.783 19.45 19.45 35.57 2.69
633 638 1.856688 CGTCGTCAACGCATTTCCA 59.143 52.632 0.00 0.00 45.76 3.53
642 647 2.159801 CCCGTTTTTATCCGTCGTCAAC 60.160 50.000 0.00 0.00 0.00 3.18
644 649 1.000731 ACCCGTTTTTATCCGTCGTCA 59.999 47.619 0.00 0.00 0.00 4.35
645 650 1.391144 CACCCGTTTTTATCCGTCGTC 59.609 52.381 0.00 0.00 0.00 4.20
646 651 1.270252 ACACCCGTTTTTATCCGTCGT 60.270 47.619 0.00 0.00 0.00 4.34
649 654 2.293955 CCAAACACCCGTTTTTATCCGT 59.706 45.455 0.00 0.00 42.82 4.69
650 655 2.923181 GCCAAACACCCGTTTTTATCCG 60.923 50.000 0.00 0.00 42.82 4.18
664 669 2.331098 CGCGCAAAGAGCCAAACA 59.669 55.556 8.75 0.00 41.38 2.83
665 670 3.099574 GCGCGCAAAGAGCCAAAC 61.100 61.111 29.10 0.00 39.90 2.93
673 678 0.516524 GAGACTAAACGCGCGCAAAG 60.517 55.000 32.58 25.15 0.00 2.77
677 682 1.057361 CTTGAGACTAAACGCGCGC 59.943 57.895 32.58 23.91 0.00 6.86
679 684 1.057361 CGCTTGAGACTAAACGCGC 59.943 57.895 5.73 0.00 34.05 6.86
680 685 0.362512 GTCGCTTGAGACTAAACGCG 59.637 55.000 3.53 3.53 41.69 6.01
681 686 0.714439 GGTCGCTTGAGACTAAACGC 59.286 55.000 4.67 0.00 40.76 4.84
738 773 0.804933 GCAACTACGAGTTAGGCCGG 60.805 60.000 0.00 0.00 36.03 6.13
739 774 1.138047 CGCAACTACGAGTTAGGCCG 61.138 60.000 0.00 0.00 36.03 6.13
748 783 0.931702 CACAACAACCGCAACTACGA 59.068 50.000 0.00 0.00 34.06 3.43
749 784 0.041663 CCACAACAACCGCAACTACG 60.042 55.000 0.00 0.00 0.00 3.51
1041 1081 2.839098 CAGGTGGCCACAAGGAGT 59.161 61.111 35.78 10.93 36.89 3.85
1054 1094 0.118144 AAGAGAGGGGAGAAGCAGGT 59.882 55.000 0.00 0.00 0.00 4.00
1229 1269 7.255451 GGAACTGAATGACTCCACAATTTAACA 60.255 37.037 0.00 0.00 0.00 2.41
1410 1461 4.156008 GTGGCATTACTCAAGAATTTCCGT 59.844 41.667 0.00 0.00 0.00 4.69
1411 1462 4.396166 AGTGGCATTACTCAAGAATTTCCG 59.604 41.667 0.00 0.00 0.00 4.30
1517 1568 0.744414 AATTGGACCTCGGACGCATG 60.744 55.000 0.00 0.00 0.00 4.06
1685 1736 7.151999 TGTGGGAAAAATCATGTGTACATAC 57.848 36.000 0.00 0.00 34.26 2.39
1703 1754 8.154856 GGCTAATAAGTAACTAATGATGTGGGA 58.845 37.037 0.00 0.00 0.00 4.37
1706 1757 9.547753 ACAGGCTAATAAGTAACTAATGATGTG 57.452 33.333 0.00 0.00 0.00 3.21
1709 1760 9.477484 CGAACAGGCTAATAAGTAACTAATGAT 57.523 33.333 0.00 0.00 0.00 2.45
1750 1801 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
1751 1802 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
1752 1803 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
1753 1804 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
1754 1805 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
1755 1806 2.598589 CGACGAGTAATTTGGAACGGA 58.401 47.619 0.00 0.00 0.00 4.69
1756 1807 1.060122 GCGACGAGTAATTTGGAACGG 59.940 52.381 0.00 0.00 0.00 4.44
1757 1808 1.722464 TGCGACGAGTAATTTGGAACG 59.278 47.619 0.00 0.00 0.00 3.95
1758 1809 2.991190 TCTGCGACGAGTAATTTGGAAC 59.009 45.455 0.00 0.00 0.00 3.62
1759 1810 3.306917 TCTGCGACGAGTAATTTGGAA 57.693 42.857 0.00 0.00 0.00 3.53
1760 1811 3.306917 TTCTGCGACGAGTAATTTGGA 57.693 42.857 0.00 0.00 0.00 3.53
1761 1812 4.334443 CATTTCTGCGACGAGTAATTTGG 58.666 43.478 0.00 0.00 0.00 3.28
1762 1813 4.092821 TCCATTTCTGCGACGAGTAATTTG 59.907 41.667 0.00 0.00 0.00 2.32
1763 1814 4.250464 TCCATTTCTGCGACGAGTAATTT 58.750 39.130 0.00 0.00 0.00 1.82
1764 1815 3.857052 TCCATTTCTGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
1765 1816 3.520290 TCCATTTCTGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
1766 1817 3.186909 CATCCATTTCTGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
1767 1818 2.165641 ACATCCATTTCTGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
1768 1819 1.066858 ACATCCATTTCTGCGACGAGT 60.067 47.619 0.00 0.00 0.00 4.18
1769 1820 1.645034 ACATCCATTTCTGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
1770 1821 2.951457 TACATCCATTTCTGCGACGA 57.049 45.000 0.00 0.00 0.00 4.20
1771 1822 3.384668 AGATACATCCATTTCTGCGACG 58.615 45.455 0.00 0.00 0.00 5.12
1772 1823 5.773575 TCTAGATACATCCATTTCTGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
1773 1824 6.040955 AGTTCTAGATACATCCATTTCTGCGA 59.959 38.462 0.00 0.00 0.00 5.10
1774 1825 6.219473 AGTTCTAGATACATCCATTTCTGCG 58.781 40.000 0.00 0.00 0.00 5.18
1775 1826 9.547753 TTTAGTTCTAGATACATCCATTTCTGC 57.452 33.333 0.00 0.00 0.00 4.26
1801 1852 8.700051 GCAGGTATGGATGTATCTAGATGTATT 58.300 37.037 15.79 0.00 0.00 1.89
1802 1853 7.013750 CGCAGGTATGGATGTATCTAGATGTAT 59.986 40.741 15.79 9.11 0.00 2.29
1803 1854 6.318900 CGCAGGTATGGATGTATCTAGATGTA 59.681 42.308 15.79 4.44 0.00 2.29
1804 1855 5.126222 CGCAGGTATGGATGTATCTAGATGT 59.874 44.000 15.79 1.25 0.00 3.06
1805 1856 5.358160 TCGCAGGTATGGATGTATCTAGATG 59.642 44.000 15.79 0.00 0.00 2.90
1806 1857 5.358442 GTCGCAGGTATGGATGTATCTAGAT 59.642 44.000 10.73 10.73 0.00 1.98
1807 1858 4.700692 GTCGCAGGTATGGATGTATCTAGA 59.299 45.833 0.00 0.00 0.00 2.43
1808 1859 4.459337 TGTCGCAGGTATGGATGTATCTAG 59.541 45.833 0.00 0.00 0.00 2.43
1809 1860 4.403734 TGTCGCAGGTATGGATGTATCTA 58.596 43.478 0.00 0.00 0.00 1.98
1810 1861 3.230976 TGTCGCAGGTATGGATGTATCT 58.769 45.455 0.00 0.00 0.00 1.98
1811 1862 3.660501 TGTCGCAGGTATGGATGTATC 57.339 47.619 0.00 0.00 0.00 2.24
1812 1863 3.388024 ACTTGTCGCAGGTATGGATGTAT 59.612 43.478 0.00 0.00 0.00 2.29
1813 1864 2.764010 ACTTGTCGCAGGTATGGATGTA 59.236 45.455 0.00 0.00 0.00 2.29
1814 1865 1.555075 ACTTGTCGCAGGTATGGATGT 59.445 47.619 0.00 0.00 0.00 3.06
1815 1866 2.315925 ACTTGTCGCAGGTATGGATG 57.684 50.000 0.00 0.00 0.00 3.51
1816 1867 4.689612 ATTACTTGTCGCAGGTATGGAT 57.310 40.909 3.46 0.00 0.00 3.41
1817 1868 4.439057 GAATTACTTGTCGCAGGTATGGA 58.561 43.478 3.46 0.00 0.00 3.41
1818 1869 3.245284 CGAATTACTTGTCGCAGGTATGG 59.755 47.826 3.46 0.00 0.00 2.74
1819 1870 3.245284 CCGAATTACTTGTCGCAGGTATG 59.755 47.826 3.46 0.00 35.93 2.39
1820 1871 3.131577 TCCGAATTACTTGTCGCAGGTAT 59.868 43.478 3.46 0.00 35.93 2.73
1821 1872 2.492881 TCCGAATTACTTGTCGCAGGTA 59.507 45.455 0.00 0.00 35.93 3.08
1822 1873 1.274167 TCCGAATTACTTGTCGCAGGT 59.726 47.619 0.00 0.91 35.93 4.00
1823 1874 2.004583 TCCGAATTACTTGTCGCAGG 57.995 50.000 0.00 0.00 35.93 4.85
1824 1875 2.734606 TGTTCCGAATTACTTGTCGCAG 59.265 45.455 0.00 0.00 35.93 5.18
1825 1876 2.734606 CTGTTCCGAATTACTTGTCGCA 59.265 45.455 0.00 0.00 35.93 5.10
1826 1877 2.991190 TCTGTTCCGAATTACTTGTCGC 59.009 45.455 0.00 0.00 35.93 5.19
1827 1878 3.612860 CCTCTGTTCCGAATTACTTGTCG 59.387 47.826 0.00 0.00 37.01 4.35
1828 1879 3.933332 CCCTCTGTTCCGAATTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
1829 1880 3.581332 TCCCTCTGTTCCGAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
1830 1881 4.184629 CTCCCTCTGTTCCGAATTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
1831 1882 3.838903 ACTCCCTCTGTTCCGAATTACTT 59.161 43.478 0.00 0.00 0.00 2.24
1832 1883 3.442076 ACTCCCTCTGTTCCGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
1833 1884 3.889520 ACTCCCTCTGTTCCGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
1834 1885 4.346730 TGTACTCCCTCTGTTCCGAATTA 58.653 43.478 0.00 0.00 0.00 1.40
1835 1886 3.170717 TGTACTCCCTCTGTTCCGAATT 58.829 45.455 0.00 0.00 0.00 2.17
1836 1887 2.816411 TGTACTCCCTCTGTTCCGAAT 58.184 47.619 0.00 0.00 0.00 3.34
1837 1888 2.297698 TGTACTCCCTCTGTTCCGAA 57.702 50.000 0.00 0.00 0.00 4.30
1838 1889 2.100197 CATGTACTCCCTCTGTTCCGA 58.900 52.381 0.00 0.00 0.00 4.55
1839 1890 2.100197 TCATGTACTCCCTCTGTTCCG 58.900 52.381 0.00 0.00 0.00 4.30
1840 1891 4.446371 CAATCATGTACTCCCTCTGTTCC 58.554 47.826 0.00 0.00 0.00 3.62
1841 1892 4.080863 ACCAATCATGTACTCCCTCTGTTC 60.081 45.833 0.00 0.00 0.00 3.18
1842 1893 3.846588 ACCAATCATGTACTCCCTCTGTT 59.153 43.478 0.00 0.00 0.00 3.16
1843 1894 3.452627 GACCAATCATGTACTCCCTCTGT 59.547 47.826 0.00 0.00 0.00 3.41
1844 1895 3.708631 AGACCAATCATGTACTCCCTCTG 59.291 47.826 0.00 0.00 0.00 3.35
1845 1896 3.964031 GAGACCAATCATGTACTCCCTCT 59.036 47.826 0.00 0.00 0.00 3.69
1846 1897 3.070302 GGAGACCAATCATGTACTCCCTC 59.930 52.174 0.00 0.00 39.21 4.30
1847 1898 3.041946 GGAGACCAATCATGTACTCCCT 58.958 50.000 0.00 0.00 39.21 4.20
1848 1899 3.041946 AGGAGACCAATCATGTACTCCC 58.958 50.000 0.00 0.00 42.66 4.30
1849 1900 3.964031 AGAGGAGACCAATCATGTACTCC 59.036 47.826 0.00 0.00 42.32 3.85
1850 1901 4.404073 ACAGAGGAGACCAATCATGTACTC 59.596 45.833 0.00 0.00 0.00 2.59
1851 1902 4.357325 ACAGAGGAGACCAATCATGTACT 58.643 43.478 0.00 0.00 0.00 2.73
1852 1903 4.744795 ACAGAGGAGACCAATCATGTAC 57.255 45.455 0.00 0.00 0.00 2.90
1853 1904 5.013079 ACAAACAGAGGAGACCAATCATGTA 59.987 40.000 0.00 0.00 0.00 2.29
1854 1905 4.202503 ACAAACAGAGGAGACCAATCATGT 60.203 41.667 0.00 0.00 0.00 3.21
1879 1930 4.221342 CACAACAATCTCCACATGAAACG 58.779 43.478 0.00 0.00 0.00 3.60
1903 1954 6.650807 GTCAATGATGTTGGTTGAGTAGAAGA 59.349 38.462 0.00 0.00 32.98 2.87
2140 2191 4.377021 CACAAGTAGTGTAAACAGGAGCA 58.623 43.478 0.00 0.00 43.40 4.26
2320 2371 3.537795 AGGCGATATACCCTTACCTGA 57.462 47.619 0.00 0.00 0.00 3.86
2330 2381 3.243336 CGAAGCAGGTAAGGCGATATAC 58.757 50.000 0.00 0.00 36.08 1.47
2334 2385 1.108776 TACGAAGCAGGTAAGGCGAT 58.891 50.000 0.00 0.00 36.08 4.58
2343 2394 2.474410 AAAGGAAGGTACGAAGCAGG 57.526 50.000 0.00 0.00 0.00 4.85
2344 2395 4.065789 AGAAAAAGGAAGGTACGAAGCAG 58.934 43.478 0.00 0.00 0.00 4.24
2350 2401 5.602458 GTACCAAGAAAAAGGAAGGTACG 57.398 43.478 0.00 0.00 41.18 3.67
2357 2408 6.269307 AGCTGTAGTAGTACCAAGAAAAAGGA 59.731 38.462 5.26 0.00 0.00 3.36
2360 2411 6.183361 ACCAGCTGTAGTAGTACCAAGAAAAA 60.183 38.462 13.81 0.00 0.00 1.94
2364 2415 4.015084 GACCAGCTGTAGTAGTACCAAGA 58.985 47.826 13.81 0.00 0.00 3.02
2369 2420 3.005554 TCGTGACCAGCTGTAGTAGTAC 58.994 50.000 13.81 0.37 0.00 2.73
2370 2421 3.339253 TCGTGACCAGCTGTAGTAGTA 57.661 47.619 13.81 0.00 0.00 1.82
2374 2425 3.510360 ACTAAATCGTGACCAGCTGTAGT 59.490 43.478 13.81 7.45 0.00 2.73
2376 2427 4.530710 AACTAAATCGTGACCAGCTGTA 57.469 40.909 13.81 0.00 0.00 2.74
2448 2499 6.258068 GGCCACTACACATATAAGTTCAGAAC 59.742 42.308 5.00 5.00 0.00 3.01
2456 2507 6.767902 AGACAAATGGCCACTACACATATAAG 59.232 38.462 8.16 0.00 0.00 1.73
2466 2517 4.042311 TCCTACAAAGACAAATGGCCACTA 59.958 41.667 8.16 0.00 0.00 2.74
2468 2519 3.153919 TCCTACAAAGACAAATGGCCAC 58.846 45.455 8.16 0.00 0.00 5.01
2528 2579 2.264005 TTGAACCAATGTAGCACGGT 57.736 45.000 0.00 0.00 0.00 4.83
2586 2637 6.594159 GCGCAAATGGTGGTATAGTAATAGAT 59.406 38.462 0.30 0.00 0.00 1.98
2595 2646 1.384525 GTGGCGCAAATGGTGGTATA 58.615 50.000 10.83 0.00 0.00 1.47
2637 2688 1.768870 CGGGGTGTATCAGGAGGAATT 59.231 52.381 0.00 0.00 0.00 2.17
2668 2719 9.220767 GTCATAGAACAAACCTCTGAAGTAAAT 57.779 33.333 0.00 0.00 0.00 1.40
2886 2974 4.742417 AGCGCTGCATATCTTCATAGTAG 58.258 43.478 10.39 0.00 0.00 2.57
3341 3429 5.221925 ACAAGATCAAGAAAGCCAGGTCTTA 60.222 40.000 0.00 0.00 32.79 2.10
3355 3443 8.186821 AGAAACAGAACTTTTCACAAGATCAAG 58.813 33.333 0.00 0.00 35.72 3.02
3398 3486 6.739331 ATTCTATGGATCTTCGGACTTCTT 57.261 37.500 0.00 0.00 0.00 2.52
3474 3593 2.827921 ACAACCGGTTACGTAAGATCCT 59.172 45.455 21.79 0.00 43.62 3.24
3484 3603 5.590104 ATTACAACGTTACAACCGGTTAC 57.410 39.130 21.79 14.16 0.00 2.50
3488 3607 4.471157 ACAATTACAACGTTACAACCGG 57.529 40.909 0.00 0.00 0.00 5.28
3635 3754 6.430000 GCAACTTCTGGAGTAGGTGAAAAATA 59.570 38.462 2.73 0.00 37.72 1.40
3636 3755 5.241728 GCAACTTCTGGAGTAGGTGAAAAAT 59.758 40.000 2.73 0.00 37.72 1.82
3645 3931 4.142730 GCTGAAATGCAACTTCTGGAGTAG 60.143 45.833 15.80 5.94 37.72 2.57
3650 3936 1.401931 CGGCTGAAATGCAACTTCTGG 60.402 52.381 15.80 9.40 34.04 3.86
3697 3983 9.476202 CGTATCTCTTCAATGTGGAAATATGTA 57.524 33.333 0.00 0.00 0.00 2.29
3883 4169 6.208599 TCTCCACATTTTTACAGAATTCCCAC 59.791 38.462 0.65 0.00 0.00 4.61
4061 4347 2.288395 CCAGGCATGAAACCAAACTGAC 60.288 50.000 0.00 0.00 0.00 3.51
4075 4361 3.083997 GGTCGACCTCCCAGGCAT 61.084 66.667 27.64 0.00 39.63 4.40
4091 4377 2.884639 ACCAAGAAAATGACTTCCACGG 59.115 45.455 0.00 0.00 0.00 4.94
4093 4379 4.753107 TCGTACCAAGAAAATGACTTCCAC 59.247 41.667 0.00 0.00 0.00 4.02
4121 4407 6.373005 TTTCTCCATGTATCTCTCCACAAA 57.627 37.500 0.00 0.00 0.00 2.83
4145 4431 1.076044 AACACCATATGCAGGGCCC 60.076 57.895 16.46 16.46 0.00 5.80
4181 4468 2.771089 TCCGCGGTATCTTATCGTAGT 58.229 47.619 27.15 0.00 34.10 2.73
4214 4501 0.260230 TTTGTGTTTCTCCCAGGCCA 59.740 50.000 5.01 0.00 0.00 5.36
4220 4507 2.230660 CTGGGACTTTGTGTTTCTCCC 58.769 52.381 0.00 0.00 36.52 4.30
4246 4533 7.475015 CACATGTTCTTAATGAGGGTAATGTG 58.525 38.462 0.00 0.00 0.00 3.21
4271 4558 4.404507 ACACTTGTCACAACATTATCGC 57.595 40.909 0.00 0.00 34.73 4.58
4272 4559 6.426327 TCAAACACTTGTCACAACATTATCG 58.574 36.000 0.00 0.00 34.73 2.92
4294 4581 3.123050 CAGTGTCGTCATCACTTGTTCA 58.877 45.455 0.00 0.00 43.14 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.