Multiple sequence alignment - TraesCS5A01G298600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G298600 chr5A 100.000 2494 0 0 1 2494 505623255 505625748 0.000000e+00 4606
1 TraesCS5A01G298600 chr5B 91.954 1914 101 23 1 1910 480297915 480299779 0.000000e+00 2632
2 TraesCS5A01G298600 chr5B 86.387 382 25 10 1923 2291 480299763 480300130 2.330000e-105 392
3 TraesCS5A01G298600 chr5D 93.067 1125 52 8 1 1116 400292748 400293855 0.000000e+00 1622
4 TraesCS5A01G298600 chr5D 94.301 386 21 1 1170 1554 400293848 400294233 7.680000e-165 590
5 TraesCS5A01G298600 chr5D 85.766 555 32 17 1924 2461 400294508 400295032 6.070000e-151 544
6 TraesCS5A01G298600 chr5D 89.381 226 16 6 1685 1910 400294306 400294523 6.790000e-71 278
7 TraesCS5A01G298600 chr1A 80.459 1438 139 57 270 1617 560313559 560314944 0.000000e+00 968
8 TraesCS5A01G298600 chr1D 82.739 1066 100 34 602 1637 467626590 467625579 0.000000e+00 872
9 TraesCS5A01G298600 chr1D 83.133 332 31 7 270 595 467627652 467627340 1.890000e-71 279
10 TraesCS5A01G298600 chr1B 81.879 1054 105 39 270 1280 645520610 645519600 0.000000e+00 809
11 TraesCS5A01G298600 chr4D 83.755 277 33 8 1322 1597 432433841 432434106 4.120000e-63 252


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G298600 chr5A 505623255 505625748 2493 False 4606.0 4606 100.00000 1 2494 1 chr5A.!!$F1 2493
1 TraesCS5A01G298600 chr5B 480297915 480300130 2215 False 1512.0 2632 89.17050 1 2291 2 chr5B.!!$F1 2290
2 TraesCS5A01G298600 chr5D 400292748 400295032 2284 False 758.5 1622 90.62875 1 2461 4 chr5D.!!$F1 2460
3 TraesCS5A01G298600 chr1A 560313559 560314944 1385 False 968.0 968 80.45900 270 1617 1 chr1A.!!$F1 1347
4 TraesCS5A01G298600 chr1D 467625579 467627652 2073 True 575.5 872 82.93600 270 1637 2 chr1D.!!$R1 1367
5 TraesCS5A01G298600 chr1B 645519600 645520610 1010 True 809.0 809 81.87900 270 1280 1 chr1B.!!$R1 1010

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
439 447 0.392336 CTGAGGCCACTATGAGCTCC 59.608 60.0 12.15 0.0 0.0 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2271 3142 0.098728 CGGCGGAAAGTAGGCAAATG 59.901 55.0 0.0 0.0 0.0 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
143 144 4.685169 AAATAAACACAGCTCATCACGG 57.315 40.909 0.00 0.00 0.00 4.94
148 149 2.343426 ACAGCTCATCACGGCTCGA 61.343 57.895 1.50 0.00 36.59 4.04
180 181 3.435186 GACCAAGGCCGCTTGAGC 61.435 66.667 6.30 0.00 36.50 4.26
331 332 3.064931 GTCGAGGTTCAACTGGGTAAAG 58.935 50.000 0.00 0.00 0.00 1.85
424 431 6.754209 CACAAACTATCTACCTAAGTGCTGAG 59.246 42.308 0.00 0.00 0.00 3.35
439 447 0.392336 CTGAGGCCACTATGAGCTCC 59.608 60.000 12.15 0.00 0.00 4.70
449 458 4.276926 CCACTATGAGCTCCAAATAAAGGC 59.723 45.833 12.15 0.00 0.00 4.35
453 462 3.347216 TGAGCTCCAAATAAAGGCACTC 58.653 45.455 12.15 0.00 38.49 3.51
454 463 3.244875 TGAGCTCCAAATAAAGGCACTCA 60.245 43.478 12.15 0.00 38.49 3.41
455 464 3.758554 GAGCTCCAAATAAAGGCACTCAA 59.241 43.478 0.87 0.00 38.49 3.02
456 465 3.507622 AGCTCCAAATAAAGGCACTCAAC 59.492 43.478 0.00 0.00 38.49 3.18
457 466 3.255642 GCTCCAAATAAAGGCACTCAACA 59.744 43.478 0.00 0.00 38.49 3.33
515 534 4.765856 GGCTGCATTGATCAGGATAAGAAT 59.234 41.667 0.50 0.00 32.41 2.40
541 572 3.423749 GGTACCGGATTGGAAGGAAAAA 58.576 45.455 9.46 0.00 42.00 1.94
591 629 8.217111 TGTCACCATCCTATATGCAAGAAATTA 58.783 33.333 0.00 0.00 0.00 1.40
632 1415 5.047377 TCTGCTTTAATTTTACCCCTTGCAG 60.047 40.000 0.00 0.00 43.53 4.41
687 1484 2.796617 CTTTTCGCGTGCTTGCCG 60.797 61.111 5.77 0.00 0.00 5.69
1023 1847 2.439701 AGATTGCCTGCGCTGCAT 60.440 55.556 22.42 13.99 38.13 3.96
1080 1904 2.718073 CCATGCTTCAAGGGCTGCC 61.718 63.158 11.05 11.05 0.00 4.85
1103 1927 5.591472 CCATTTCATTCTCAGCTGGTAATCA 59.409 40.000 15.13 0.00 0.00 2.57
1145 1988 9.193806 AGATTTTGTTATATTGTTCTGCCTGAT 57.806 29.630 0.00 0.00 0.00 2.90
1174 2024 5.473504 AGGACGATTTTATTCCCATATGCAC 59.526 40.000 0.00 0.00 0.00 4.57
1258 2108 5.808366 TGGTCAGGTGATGATAGTATTCC 57.192 43.478 0.00 0.00 40.92 3.01
1265 2115 7.123397 TCAGGTGATGATAGTATTCCAGCTATC 59.877 40.741 9.95 0.00 42.18 2.08
1280 2130 2.681848 AGCTATCTGTGTTCATGCAAGC 59.318 45.455 0.00 0.00 0.00 4.01
1286 2136 1.536766 TGTGTTCATGCAAGCAGCTAC 59.463 47.619 0.00 0.00 45.94 3.58
1326 2176 5.165961 ACTATGTCAGGTGCAAACTGTAT 57.834 39.130 16.56 14.37 37.25 2.29
1330 2180 4.203226 TGTCAGGTGCAAACTGTATTTGA 58.797 39.130 16.56 0.00 37.25 2.69
1379 2233 0.463295 CTGTCGTAGCGGGAGAGGTA 60.463 60.000 0.00 0.00 0.00 3.08
1647 2506 7.768120 AGAGCATCATATATAAAAGCACTAGCC 59.232 37.037 0.00 0.00 38.88 3.93
1648 2507 6.825721 AGCATCATATATAAAAGCACTAGCCC 59.174 38.462 0.00 0.00 43.56 5.19
1792 2651 3.135994 ACGGCTGATTTCGTTAAGTGTT 58.864 40.909 0.00 0.00 36.04 3.32
1816 2675 6.763355 TGCTGGATCCAGAATTTATAGACTC 58.237 40.000 40.29 20.17 46.30 3.36
1844 2703 4.361451 GTTGCACTGGAATGGAACATAG 57.639 45.455 5.41 0.00 46.74 2.23
1869 2728 6.656632 TGGTTGCACCAGTATATTCAAAAA 57.343 33.333 4.16 0.00 44.79 1.94
1871 2730 7.319646 TGGTTGCACCAGTATATTCAAAAATC 58.680 34.615 4.16 0.00 44.79 2.17
1872 2731 7.039434 TGGTTGCACCAGTATATTCAAAAATCA 60.039 33.333 4.16 0.00 44.79 2.57
1874 2733 9.202273 GTTGCACCAGTATATTCAAAAATCAAA 57.798 29.630 0.00 0.00 0.00 2.69
1875 2734 9.770097 TTGCACCAGTATATTCAAAAATCAAAA 57.230 25.926 0.00 0.00 0.00 2.44
1876 2735 9.421806 TGCACCAGTATATTCAAAAATCAAAAG 57.578 29.630 0.00 0.00 0.00 2.27
1886 2745 6.890663 TCAAAAATCAAAAGACTGCACTTG 57.109 33.333 0.00 0.00 0.00 3.16
1960 2819 0.324368 TAGCACACCACGGGAGAGAT 60.324 55.000 0.00 0.00 0.00 2.75
1983 2842 5.849510 TCGAGAGAGTTTAACACAATCCAA 58.150 37.500 0.00 0.00 34.84 3.53
2032 2891 7.715265 TTCAAGAAGTCAAGTCATACTGAAC 57.285 36.000 0.00 0.00 0.00 3.18
2058 2917 9.273016 CTGTCCATAGAAAAAGTTACTTTGAGA 57.727 33.333 11.35 0.70 33.64 3.27
2059 2918 9.273016 TGTCCATAGAAAAAGTTACTTTGAGAG 57.727 33.333 11.35 0.63 33.64 3.20
2060 2919 9.274206 GTCCATAGAAAAAGTTACTTTGAGAGT 57.726 33.333 11.35 0.00 42.55 3.24
2061 2920 9.847224 TCCATAGAAAAAGTTACTTTGAGAGTT 57.153 29.630 11.35 1.36 39.86 3.01
2063 2922 9.798885 CATAGAAAAAGTTACTTTGAGAGTTCG 57.201 33.333 11.35 0.00 39.86 3.95
2064 2923 9.760077 ATAGAAAAAGTTACTTTGAGAGTTCGA 57.240 29.630 11.35 7.60 39.86 3.71
2087 2946 3.367630 GTGCCAAAAGTTGTTGTGACAAG 59.632 43.478 0.00 0.00 45.86 3.16
2233 3094 3.988379 ACATCAGCATCACACGTTTTT 57.012 38.095 0.00 0.00 0.00 1.94
2234 3095 3.888934 ACATCAGCATCACACGTTTTTC 58.111 40.909 0.00 0.00 0.00 2.29
2254 3125 3.347216 TCTGCTAAGGATGGAAAAGTGC 58.653 45.455 0.00 0.00 0.00 4.40
2288 3159 3.329114 GCATTTGCCTACTTTCCGC 57.671 52.632 0.00 0.00 34.31 5.54
2308 3181 0.311165 CGGCCTAGAGACGGTGTATG 59.689 60.000 0.00 0.00 0.00 2.39
2326 3199 6.596888 GGTGTATGCAATATCATGCTATCTGT 59.403 38.462 0.00 0.00 46.54 3.41
2332 3205 7.170277 TGCAATATCATGCTATCTGTAACCAT 58.830 34.615 1.32 0.00 46.54 3.55
2337 3210 6.484364 TCATGCTATCTGTAACCATCTCAA 57.516 37.500 0.00 0.00 0.00 3.02
2395 3268 1.780503 ATATGCTTGTTTGGAGGGGC 58.219 50.000 0.00 0.00 0.00 5.80
2420 3293 6.708054 CCATAGGCTAAAAGTGTCCAATCTAG 59.292 42.308 0.00 0.00 0.00 2.43
2425 3298 0.919710 AAGTGTCCAATCTAGGCCCC 59.080 55.000 0.00 0.00 0.00 5.80
2427 3300 0.988678 GTGTCCAATCTAGGCCCCCT 60.989 60.000 0.00 0.00 37.71 4.79
2461 3336 4.970662 TTGAGATAAATGCACCAGAAGC 57.029 40.909 0.00 0.00 0.00 3.86
2462 3337 3.282021 TGAGATAAATGCACCAGAAGCC 58.718 45.455 0.00 0.00 0.00 4.35
2463 3338 3.282021 GAGATAAATGCACCAGAAGCCA 58.718 45.455 0.00 0.00 0.00 4.75
2464 3339 3.019564 AGATAAATGCACCAGAAGCCAC 58.980 45.455 0.00 0.00 0.00 5.01
2465 3340 2.284754 TAAATGCACCAGAAGCCACA 57.715 45.000 0.00 0.00 0.00 4.17
2466 3341 1.412079 AAATGCACCAGAAGCCACAA 58.588 45.000 0.00 0.00 0.00 3.33
2467 3342 1.412079 AATGCACCAGAAGCCACAAA 58.588 45.000 0.00 0.00 0.00 2.83
2468 3343 1.412079 ATGCACCAGAAGCCACAAAA 58.588 45.000 0.00 0.00 0.00 2.44
2469 3344 0.459489 TGCACCAGAAGCCACAAAAC 59.541 50.000 0.00 0.00 0.00 2.43
2470 3345 0.746659 GCACCAGAAGCCACAAAACT 59.253 50.000 0.00 0.00 0.00 2.66
2471 3346 1.269257 GCACCAGAAGCCACAAAACTC 60.269 52.381 0.00 0.00 0.00 3.01
2472 3347 2.301346 CACCAGAAGCCACAAAACTCT 58.699 47.619 0.00 0.00 0.00 3.24
2473 3348 2.291741 CACCAGAAGCCACAAAACTCTC 59.708 50.000 0.00 0.00 0.00 3.20
2474 3349 1.532868 CCAGAAGCCACAAAACTCTCG 59.467 52.381 0.00 0.00 0.00 4.04
2475 3350 1.069636 CAGAAGCCACAAAACTCTCGC 60.070 52.381 0.00 0.00 0.00 5.03
2476 3351 0.110644 GAAGCCACAAAACTCTCGCG 60.111 55.000 0.00 0.00 0.00 5.87
2477 3352 0.531974 AAGCCACAAAACTCTCGCGA 60.532 50.000 9.26 9.26 0.00 5.87
2478 3353 0.946221 AGCCACAAAACTCTCGCGAG 60.946 55.000 30.03 30.03 43.10 5.03
2479 3354 0.944311 GCCACAAAACTCTCGCGAGA 60.944 55.000 34.65 34.65 39.74 4.04
2480 3355 1.714794 CCACAAAACTCTCGCGAGAT 58.285 50.000 36.70 22.18 39.74 2.75
2481 3356 1.391485 CCACAAAACTCTCGCGAGATG 59.609 52.381 36.70 31.44 39.74 2.90
2482 3357 2.328473 CACAAAACTCTCGCGAGATGA 58.672 47.619 36.70 17.41 39.74 2.92
2483 3358 2.343843 CACAAAACTCTCGCGAGATGAG 59.656 50.000 36.70 27.16 39.74 2.90
2484 3359 2.029828 ACAAAACTCTCGCGAGATGAGT 60.030 45.455 36.70 27.82 44.61 3.41
2485 3360 3.190744 ACAAAACTCTCGCGAGATGAGTA 59.809 43.478 36.70 15.67 43.12 2.59
2486 3361 3.408288 AAACTCTCGCGAGATGAGTAC 57.592 47.619 36.70 0.00 43.12 2.73
2487 3362 2.319136 ACTCTCGCGAGATGAGTACT 57.681 50.000 36.70 13.09 42.57 2.73
2488 3363 2.634600 ACTCTCGCGAGATGAGTACTT 58.365 47.619 36.70 12.46 42.57 2.24
2489 3364 3.011119 ACTCTCGCGAGATGAGTACTTT 58.989 45.455 36.70 11.83 42.57 2.66
2490 3365 3.181505 ACTCTCGCGAGATGAGTACTTTG 60.182 47.826 36.70 23.04 42.57 2.77
2491 3366 2.097629 TCTCGCGAGATGAGTACTTTGG 59.902 50.000 33.84 5.25 40.84 3.28
2492 3367 1.816835 TCGCGAGATGAGTACTTTGGT 59.183 47.619 3.71 0.00 33.31 3.67
2493 3368 2.159421 TCGCGAGATGAGTACTTTGGTC 60.159 50.000 3.71 0.00 33.31 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
180 181 6.017192 TCTAAGTTATATACAGGCCTGAGGG 58.983 44.000 39.19 13.58 0.00 4.30
187 188 8.321650 ACTACTCGTCTAAGTTATATACAGGC 57.678 38.462 0.00 0.00 0.00 4.85
188 189 8.934825 GGACTACTCGTCTAAGTTATATACAGG 58.065 40.741 0.00 0.00 42.44 4.00
331 332 3.005155 ACTCAAAAGCTCATCAAGTTGGC 59.995 43.478 2.34 0.00 0.00 4.52
424 431 2.355010 ATTTGGAGCTCATAGTGGCC 57.645 50.000 17.19 0.00 0.00 5.36
439 447 7.538303 AAAGTTTGTTGAGTGCCTTTATTTG 57.462 32.000 0.00 0.00 0.00 2.32
449 458 9.834628 TTCAAGTAAACTAAAGTTTGTTGAGTG 57.165 29.630 21.72 12.07 46.56 3.51
550 581 0.393402 TGACATGGTGCAGATGGCTC 60.393 55.000 11.84 2.38 45.15 4.70
551 582 0.679002 GTGACATGGTGCAGATGGCT 60.679 55.000 11.84 0.00 45.15 4.75
552 583 1.660560 GGTGACATGGTGCAGATGGC 61.661 60.000 9.82 7.43 45.13 4.40
553 584 0.322726 TGGTGACATGGTGCAGATGG 60.323 55.000 9.82 0.00 33.40 3.51
617 1400 3.688049 ATAGGCTGCAAGGGGTAAAAT 57.312 42.857 0.50 0.00 0.00 1.82
687 1484 1.196808 TGAAAACTCGGCGAATTGCTC 59.803 47.619 12.13 8.69 45.43 4.26
1023 1847 2.052779 CAGAGACACCACTGCCAGA 58.947 57.895 0.00 0.00 0.00 3.86
1080 1904 6.688637 TGATTACCAGCTGAGAATGAAATG 57.311 37.500 17.39 0.00 0.00 2.32
1103 1927 6.839454 ACAAAATCTCTAGATGGCATGAGAT 58.161 36.000 18.19 18.19 45.00 2.75
1145 1988 5.429681 TGGGAATAAAATCGTCCTCTCAA 57.570 39.130 0.00 0.00 0.00 3.02
1265 2115 0.596577 AGCTGCTTGCATGAACACAG 59.403 50.000 3.33 0.00 45.94 3.66
1280 2130 2.072298 GTCTGAAACTGCCAGTAGCTG 58.928 52.381 0.00 0.00 44.23 4.24
1286 2136 3.340814 AGTATGGTCTGAAACTGCCAG 57.659 47.619 0.00 0.00 34.18 4.85
1647 2506 2.919666 ATTTGATGACGCTTTTCGGG 57.080 45.000 0.00 0.00 43.86 5.14
1648 2507 4.969816 ACTAATTTGATGACGCTTTTCGG 58.030 39.130 0.00 0.00 43.86 4.30
1785 2644 4.574674 ATTCTGGATCCAGCAACACTTA 57.425 40.909 33.39 13.65 43.31 2.24
1792 2651 6.327365 TGAGTCTATAAATTCTGGATCCAGCA 59.673 38.462 33.39 25.70 43.31 4.41
1816 2675 1.000060 CATTCCAGTGCAACCCAACTG 60.000 52.381 0.00 0.00 37.80 3.16
1869 2728 3.484407 AGCTCAAGTGCAGTCTTTTGAT 58.516 40.909 0.00 0.00 34.99 2.57
1871 2730 6.486253 TTATAGCTCAAGTGCAGTCTTTTG 57.514 37.500 0.00 0.00 34.99 2.44
1872 2731 7.693969 AATTATAGCTCAAGTGCAGTCTTTT 57.306 32.000 0.00 0.00 34.99 2.27
1874 2733 6.881065 TGAAATTATAGCTCAAGTGCAGTCTT 59.119 34.615 0.00 0.00 34.99 3.01
1875 2734 6.409704 TGAAATTATAGCTCAAGTGCAGTCT 58.590 36.000 0.00 0.00 34.99 3.24
1876 2735 6.668541 TGAAATTATAGCTCAAGTGCAGTC 57.331 37.500 0.00 0.00 34.99 3.51
1929 2788 4.154015 CGTGGTGTGCTATCAAAATCTTGA 59.846 41.667 0.00 0.00 45.53 3.02
1930 2789 4.406069 CGTGGTGTGCTATCAAAATCTTG 58.594 43.478 0.00 0.00 0.00 3.02
1931 2790 3.440173 CCGTGGTGTGCTATCAAAATCTT 59.560 43.478 0.00 0.00 0.00 2.40
1932 2791 3.009723 CCGTGGTGTGCTATCAAAATCT 58.990 45.455 0.00 0.00 0.00 2.40
1933 2792 2.097466 CCCGTGGTGTGCTATCAAAATC 59.903 50.000 0.00 0.00 0.00 2.17
1934 2793 2.091541 CCCGTGGTGTGCTATCAAAAT 58.908 47.619 0.00 0.00 0.00 1.82
1935 2794 1.072489 TCCCGTGGTGTGCTATCAAAA 59.928 47.619 0.00 0.00 0.00 2.44
1936 2795 0.687920 TCCCGTGGTGTGCTATCAAA 59.312 50.000 0.00 0.00 0.00 2.69
1937 2796 0.249120 CTCCCGTGGTGTGCTATCAA 59.751 55.000 0.00 0.00 0.00 2.57
1938 2797 0.613572 TCTCCCGTGGTGTGCTATCA 60.614 55.000 0.00 0.00 0.00 2.15
1960 2819 5.462530 TGGATTGTGTTAAACTCTCTCGA 57.537 39.130 0.00 0.00 0.00 4.04
1983 2842 4.798882 TGTTCAAACTACACCCCAGATTT 58.201 39.130 0.00 0.00 0.00 2.17
2032 2891 9.273016 TCTCAAAGTAACTTTTTCTATGGACAG 57.727 33.333 0.00 0.00 30.60 3.51
2058 2917 2.365582 ACAACTTTTGGCACTCGAACT 58.634 42.857 0.00 0.00 34.12 3.01
2059 2918 2.844122 ACAACTTTTGGCACTCGAAC 57.156 45.000 0.00 0.00 34.12 3.95
2060 2919 2.490115 ACAACAACTTTTGGCACTCGAA 59.510 40.909 0.00 0.00 34.12 3.71
2061 2920 2.088423 ACAACAACTTTTGGCACTCGA 58.912 42.857 0.00 0.00 34.12 4.04
2062 2921 2.159448 TCACAACAACTTTTGGCACTCG 60.159 45.455 0.00 0.00 34.12 4.18
2063 2922 3.179048 GTCACAACAACTTTTGGCACTC 58.821 45.455 0.00 0.00 34.12 3.51
2064 2923 2.560542 TGTCACAACAACTTTTGGCACT 59.439 40.909 0.00 0.00 30.70 4.40
2176 3036 8.397906 TGATCAAGTAAACAGAAAACAAGTGAG 58.602 33.333 0.00 0.00 0.00 3.51
2177 3037 8.275015 TGATCAAGTAAACAGAAAACAAGTGA 57.725 30.769 0.00 0.00 0.00 3.41
2178 3038 8.961092 CATGATCAAGTAAACAGAAAACAAGTG 58.039 33.333 0.00 0.00 0.00 3.16
2179 3039 7.649306 GCATGATCAAGTAAACAGAAAACAAGT 59.351 33.333 0.00 0.00 0.00 3.16
2180 3040 7.648908 TGCATGATCAAGTAAACAGAAAACAAG 59.351 33.333 0.00 0.00 0.00 3.16
2185 3045 6.265196 ACCTTGCATGATCAAGTAAACAGAAA 59.735 34.615 0.00 0.00 41.29 2.52
2186 3046 5.769662 ACCTTGCATGATCAAGTAAACAGAA 59.230 36.000 0.00 0.00 41.29 3.02
2187 3047 5.316167 ACCTTGCATGATCAAGTAAACAGA 58.684 37.500 0.00 0.00 41.29 3.41
2188 3048 5.633830 ACCTTGCATGATCAAGTAAACAG 57.366 39.130 0.00 0.00 41.29 3.16
2233 3094 3.347216 GCACTTTTCCATCCTTAGCAGA 58.653 45.455 0.00 0.00 0.00 4.26
2234 3095 2.096496 CGCACTTTTCCATCCTTAGCAG 59.904 50.000 0.00 0.00 0.00 4.24
2271 3142 0.098728 CGGCGGAAAGTAGGCAAATG 59.901 55.000 0.00 0.00 0.00 2.32
2278 3149 1.067582 CTAGGCCGGCGGAAAGTAG 59.932 63.158 33.44 18.66 0.00 2.57
2288 3159 0.822532 ATACACCGTCTCTAGGCCGG 60.823 60.000 0.00 0.00 46.93 6.13
2308 3181 7.551974 AGATGGTTACAGATAGCATGATATTGC 59.448 37.037 4.72 0.00 43.09 3.56
2326 3199 8.642935 TGATTTTATGGTTGTTGAGATGGTTA 57.357 30.769 0.00 0.00 0.00 2.85
2395 3268 5.440610 AGATTGGACACTTTTAGCCTATGG 58.559 41.667 0.00 0.00 0.00 2.74
2401 3274 3.628032 GGCCTAGATTGGACACTTTTAGC 59.372 47.826 0.00 0.00 34.56 3.09
2442 3315 3.065925 GTGGCTTCTGGTGCATTTATCTC 59.934 47.826 0.00 0.00 0.00 2.75
2470 3345 2.097629 CCAAAGTACTCATCTCGCGAGA 59.902 50.000 38.22 38.22 42.37 4.04
2471 3346 2.159366 ACCAAAGTACTCATCTCGCGAG 60.159 50.000 30.03 30.03 36.53 5.03
2472 3347 1.816835 ACCAAAGTACTCATCTCGCGA 59.183 47.619 9.26 9.26 0.00 5.87
2473 3348 2.186076 GACCAAAGTACTCATCTCGCG 58.814 52.381 0.00 0.00 0.00 5.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.