Multiple sequence alignment - TraesCS5A01G298400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G298400 chr5A 100.000 7451 0 0 1 7451 505605201 505612651 0.000000e+00 13760.0
1 TraesCS5A01G298400 chr5A 98.837 86 1 0 4395 4480 215479501 215479586 3.600000e-33 154.0
2 TraesCS5A01G298400 chr5D 93.241 2027 93 25 5465 7451 400278908 400280930 0.000000e+00 2944.0
3 TraesCS5A01G298400 chr5D 93.377 1691 53 17 2715 4397 400275978 400277617 0.000000e+00 2447.0
4 TraesCS5A01G298400 chr5D 89.428 1608 76 42 769 2346 400269534 400271077 0.000000e+00 1941.0
5 TraesCS5A01G298400 chr5D 93.148 1080 45 10 4530 5580 400277852 400278931 0.000000e+00 1557.0
6 TraesCS5A01G298400 chr5D 93.668 379 17 5 2343 2718 400275235 400275609 1.820000e-155 560.0
7 TraesCS5A01G298400 chr5D 82.673 404 60 5 243 639 539695409 539695809 4.280000e-92 350.0
8 TraesCS5A01G298400 chr5B 92.607 2002 86 26 739 2718 480287285 480289246 0.000000e+00 2820.0
9 TraesCS5A01G298400 chr5B 93.728 1690 48 17 2719 4397 480289623 480291265 0.000000e+00 2481.0
10 TraesCS5A01G298400 chr5B 92.622 1613 68 16 4530 6101 480291500 480293102 0.000000e+00 2272.0
11 TraesCS5A01G298400 chr5B 92.182 1100 45 23 6383 7451 480293095 480294184 0.000000e+00 1517.0
12 TraesCS5A01G298400 chr5B 78.797 349 68 5 113 460 600652449 600652106 5.810000e-56 230.0
13 TraesCS5A01G298400 chr5B 94.000 100 3 3 4381 4480 664024330 664024234 1.670000e-31 148.0
14 TraesCS5A01G298400 chr5B 96.364 55 2 0 4479 4533 480291264 480291318 2.860000e-14 91.6
15 TraesCS5A01G298400 chr4A 80.665 481 84 6 23 502 631375131 631374659 1.530000e-96 364.0
16 TraesCS5A01G298400 chr4A 78.676 544 103 9 22 559 175415934 175416470 4.280000e-92 350.0
17 TraesCS5A01G298400 chr4A 88.235 119 11 3 4363 4480 107422600 107422484 1.010000e-28 139.0
18 TraesCS5A01G298400 chr4A 87.395 119 12 3 4363 4480 107368963 107368847 4.690000e-27 134.0
19 TraesCS5A01G298400 chr3D 80.335 478 83 7 26 502 72243018 72243485 1.190000e-92 351.0
20 TraesCS5A01G298400 chr3D 88.889 54 6 0 1 54 47338900 47338847 4.820000e-07 67.6
21 TraesCS5A01G298400 chr3B 78.230 565 102 10 93 642 468001892 468001334 7.160000e-90 342.0
22 TraesCS5A01G298400 chr3B 92.941 85 6 0 550 634 182440368 182440284 2.820000e-24 124.0
23 TraesCS5A01G298400 chr3B 90.909 44 4 0 2091 2134 304556945 304556902 8.070000e-05 60.2
24 TraesCS5A01G298400 chr2D 79.141 489 85 13 28 514 83812084 83811611 9.330000e-84 322.0
25 TraesCS5A01G298400 chr1D 76.898 619 109 23 26 638 32222050 32221460 3.350000e-83 320.0
26 TraesCS5A01G298400 chr1D 100.000 31 0 0 1 31 201653013 201653043 2.900000e-04 58.4
27 TraesCS5A01G298400 chr6D 81.419 296 50 3 191 486 388158587 388158877 3.480000e-58 237.0
28 TraesCS5A01G298400 chr6D 96.703 91 2 1 4395 4484 17316626 17316716 4.660000e-32 150.0
29 TraesCS5A01G298400 chr6D 81.383 188 27 5 7266 7449 472358230 472358413 6.020000e-31 147.0
30 TraesCS5A01G298400 chr6B 77.404 416 81 10 96 508 514668885 514668480 1.250000e-57 235.0
31 TraesCS5A01G298400 chr6B 83.784 185 28 2 7266 7449 717076142 717076325 2.760000e-39 174.0
32 TraesCS5A01G298400 chr6B 100.000 29 0 0 1 29 458011110 458011082 4.000000e-03 54.7
33 TraesCS5A01G298400 chr6A 80.186 323 55 7 178 499 603604209 603603895 4.500000e-57 233.0
34 TraesCS5A01G298400 chr6A 82.703 185 30 2 7266 7449 617657784 617657601 5.980000e-36 163.0
35 TraesCS5A01G298400 chr6A 97.059 34 1 0 6 39 88101933 88101900 2.900000e-04 58.4
36 TraesCS5A01G298400 chr6A 100.000 29 0 0 1 29 436118781 436118809 4.000000e-03 54.7
37 TraesCS5A01G298400 chr7D 82.703 185 32 0 7265 7449 251374464 251374648 1.660000e-36 165.0
38 TraesCS5A01G298400 chr7D 97.753 89 2 0 4395 4483 177106945 177106857 3.600000e-33 154.0
39 TraesCS5A01G298400 chr7D 97.727 88 2 0 4393 4480 49381985 49381898 1.290000e-32 152.0
40 TraesCS5A01G298400 chr7D 92.079 101 7 1 4386 4485 185552775 185552875 2.800000e-29 141.0
41 TraesCS5A01G298400 chr7D 97.260 73 2 0 7379 7451 77075437 77075365 2.820000e-24 124.0
42 TraesCS5A01G298400 chr7B 82.703 185 32 0 7265 7449 228363203 228363387 1.660000e-36 165.0
43 TraesCS5A01G298400 chr7B 96.875 32 1 0 1 32 642836874 642836843 4.000000e-03 54.7
44 TraesCS5A01G298400 chr7A 82.703 185 32 0 7265 7449 270043206 270043022 1.660000e-36 165.0
45 TraesCS5A01G298400 chr7A 100.000 29 0 0 1 29 256889988 256890016 4.000000e-03 54.7
46 TraesCS5A01G298400 chr4D 84.507 142 22 0 7266 7407 12410896 12410755 2.800000e-29 141.0
47 TraesCS5A01G298400 chr4B 90.566 106 9 1 4378 4482 491017744 491017639 1.010000e-28 139.0
48 TraesCS5A01G298400 chr2B 90.909 44 4 0 2091 2134 128052196 128052153 8.070000e-05 60.2
49 TraesCS5A01G298400 chr2B 96.970 33 1 0 1 33 21957006 21957038 1.000000e-03 56.5
50 TraesCS5A01G298400 chr3A 100.000 29 0 0 1 29 95879170 95879198 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G298400 chr5A 505605201 505612651 7450 False 13760.00 13760 100.0000 1 7451 1 chr5A.!!$F2 7450
1 TraesCS5A01G298400 chr5D 400269534 400271077 1543 False 1941.00 1941 89.4280 769 2346 1 chr5D.!!$F1 1577
2 TraesCS5A01G298400 chr5D 400275235 400280930 5695 False 1877.00 2944 93.3585 2343 7451 4 chr5D.!!$F3 5108
3 TraesCS5A01G298400 chr5B 480287285 480294184 6899 False 1836.32 2820 93.5006 739 7451 5 chr5B.!!$F1 6712
4 TraesCS5A01G298400 chr4A 175415934 175416470 536 False 350.00 350 78.6760 22 559 1 chr4A.!!$F1 537
5 TraesCS5A01G298400 chr3B 468001334 468001892 558 True 342.00 342 78.2300 93 642 1 chr3B.!!$R3 549
6 TraesCS5A01G298400 chr1D 32221460 32222050 590 True 320.00 320 76.8980 26 638 1 chr1D.!!$R1 612

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
219 234 0.031994 CCAAACCCGCTTTTGACTGG 59.968 55.000 8.18 0.00 38.54 4.00 F
651 681 0.388006 CTCCGCGACACATACACACA 60.388 55.000 8.23 0.00 0.00 3.72 F
652 682 0.665068 TCCGCGACACATACACACAC 60.665 55.000 8.23 0.00 0.00 3.82 F
653 683 0.666274 CCGCGACACATACACACACT 60.666 55.000 8.23 0.00 0.00 3.55 F
2049 2145 1.045407 TAGAACCCGCACTCTGTGTT 58.955 50.000 0.00 0.00 35.75 3.32 F
3458 3933 1.000396 GCCTGATGGGAAGCCAGTT 60.000 57.895 0.00 0.00 37.23 3.16 F
4410 4897 0.635009 ATTCTACTCCCTCCGTCCCA 59.365 55.000 0.00 0.00 0.00 4.37 F
4668 5343 0.038343 TGCTCCTTTTGGCAATTCGC 60.038 50.000 0.00 0.76 40.12 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2049 2145 0.113972 TGGCACCACCATCATTTCCA 59.886 50.000 0.00 0.0 46.36 3.53 R
2340 2436 2.461300 TCCAGTAGCCTGATAGCTGT 57.539 50.000 0.00 0.0 44.67 4.40 R
2438 2534 3.019564 AGAAGAATGGAAATGGCTTCGG 58.980 45.455 0.00 0.0 39.79 4.30 R
2606 2702 5.677319 TCCAGTGTAGAATTTGGTCCTAG 57.323 43.478 0.00 0.0 32.51 3.02 R
3827 4305 0.919981 CAAAAAGAAAGCAACGCGCA 59.080 45.000 5.73 0.0 46.13 6.09 R
4459 4946 0.042131 ACTCCCTCCGTCCCACAATA 59.958 55.000 0.00 0.0 0.00 1.90 R
5689 6493 0.610232 GCCCAGATGAGCAAGTGGTT 60.610 55.000 0.00 0.0 0.00 3.67 R
6554 7360 1.198178 TCGTTGCCAAGAATTTACCGC 59.802 47.619 0.00 0.0 0.00 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.739922 ATGAGTCGCCCCATTGGA 58.260 55.556 3.62 0.00 35.39 3.53
18 19 1.528824 ATGAGTCGCCCCATTGGAG 59.471 57.895 3.62 0.00 35.39 3.86
19 20 1.274703 ATGAGTCGCCCCATTGGAGT 61.275 55.000 3.62 0.00 35.07 3.85
20 21 1.299976 GAGTCGCCCCATTGGAGTT 59.700 57.895 3.62 0.00 35.07 3.01
23 24 2.361610 CGCCCCATTGGAGTTGCT 60.362 61.111 3.62 0.00 35.39 3.91
54 55 2.081462 CTTCAAGGCGAACCCGTAAAT 58.919 47.619 0.00 0.00 39.21 1.40
59 60 0.177373 GGCGAACCCGTAAATCTCCT 59.823 55.000 0.00 0.00 38.24 3.69
60 61 1.410153 GGCGAACCCGTAAATCTCCTA 59.590 52.381 0.00 0.00 38.24 2.94
62 63 2.724349 CGAACCCGTAAATCTCCTACG 58.276 52.381 0.00 0.00 41.39 3.51
64 65 3.700154 GAACCCGTAAATCTCCTACGAC 58.300 50.000 4.07 0.00 43.80 4.34
65 66 2.027385 ACCCGTAAATCTCCTACGACC 58.973 52.381 4.07 0.00 43.80 4.79
66 67 1.002033 CCCGTAAATCTCCTACGACCG 60.002 57.143 4.07 0.00 43.80 4.79
67 68 1.672881 CCGTAAATCTCCTACGACCGT 59.327 52.381 4.07 0.00 43.80 4.83
68 69 2.098117 CCGTAAATCTCCTACGACCGTT 59.902 50.000 0.00 0.00 43.80 4.44
69 70 3.357897 CGTAAATCTCCTACGACCGTTC 58.642 50.000 0.00 0.00 43.80 3.95
70 71 3.181507 CGTAAATCTCCTACGACCGTTCA 60.182 47.826 0.00 0.00 43.80 3.18
71 72 3.505464 AAATCTCCTACGACCGTTCAG 57.495 47.619 0.00 0.00 0.00 3.02
72 73 2.414994 ATCTCCTACGACCGTTCAGA 57.585 50.000 0.00 0.81 0.00 3.27
73 74 1.446907 TCTCCTACGACCGTTCAGAC 58.553 55.000 0.00 0.00 0.00 3.51
74 75 1.002888 TCTCCTACGACCGTTCAGACT 59.997 52.381 0.00 0.00 0.00 3.24
75 76 1.130749 CTCCTACGACCGTTCAGACTG 59.869 57.143 0.00 0.00 0.00 3.51
76 77 0.456312 CCTACGACCGTTCAGACTGC 60.456 60.000 0.00 0.00 0.00 4.40
77 78 0.793478 CTACGACCGTTCAGACTGCG 60.793 60.000 0.00 0.00 0.00 5.18
88 89 2.049063 GACTGCGCTGTCCGAACT 60.049 61.111 30.57 3.62 40.02 3.01
96 111 2.132762 CGCTGTCCGAACTACAAAAGT 58.867 47.619 0.00 0.00 41.49 2.66
123 138 1.262417 TGCTGACTTGTATCGGTCCA 58.738 50.000 0.00 0.00 0.00 4.02
159 174 1.497991 CGGTTTCTCTCGCAAACTGA 58.502 50.000 0.27 0.00 41.02 3.41
167 182 4.188462 TCTCTCGCAAACTGAAGACAAAA 58.812 39.130 0.00 0.00 0.00 2.44
170 185 5.113383 TCTCGCAAACTGAAGACAAAAGTA 58.887 37.500 0.00 0.00 0.00 2.24
171 186 5.583061 TCTCGCAAACTGAAGACAAAAGTAA 59.417 36.000 0.00 0.00 0.00 2.24
173 188 5.583061 TCGCAAACTGAAGACAAAAGTAAGA 59.417 36.000 0.00 0.00 0.00 2.10
174 189 6.092944 TCGCAAACTGAAGACAAAAGTAAGAA 59.907 34.615 0.00 0.00 0.00 2.52
176 191 7.272515 CGCAAACTGAAGACAAAAGTAAGAAAA 59.727 33.333 0.00 0.00 0.00 2.29
183 198 8.303876 TGAAGACAAAAGTAAGAAAAGTTTGCT 58.696 29.630 0.00 0.00 33.46 3.91
186 201 6.106003 ACAAAAGTAAGAAAAGTTTGCTGGG 58.894 36.000 0.00 0.00 33.46 4.45
204 219 2.662070 GGTCCGGACCGATCCCAAA 61.662 63.158 36.87 0.00 42.83 3.28
212 227 1.677633 CCGATCCCAAACCCGCTTT 60.678 57.895 0.00 0.00 0.00 3.51
217 232 0.106419 TCCCAAACCCGCTTTTGACT 60.106 50.000 8.18 0.00 38.54 3.41
219 234 0.031994 CCAAACCCGCTTTTGACTGG 59.968 55.000 8.18 0.00 38.54 4.00
226 241 1.905354 GCTTTTGACTGGCCTGGCT 60.905 57.895 19.68 0.00 0.00 4.75
238 253 1.260544 GCCTGGCTCATCAAAAACCT 58.739 50.000 12.43 0.00 0.00 3.50
240 255 1.067354 CCTGGCTCATCAAAAACCTGC 60.067 52.381 0.00 0.00 0.00 4.85
249 264 1.075301 AAAAACCTGCCACCTGCCT 60.075 52.632 0.00 0.00 40.16 4.75
258 273 3.314331 CACCTGCCTCTCCCGTGT 61.314 66.667 0.00 0.00 0.00 4.49
262 277 0.537371 CCTGCCTCTCCCGTGTTTTT 60.537 55.000 0.00 0.00 0.00 1.94
267 282 2.031069 GCCTCTCCCGTGTTTTTCTTTC 60.031 50.000 0.00 0.00 0.00 2.62
279 294 1.565156 TTTCTTTCGATGCACGCGCT 61.565 50.000 5.73 0.00 42.26 5.92
300 315 3.908213 TGCTTATAGCGTCGCATTCATA 58.092 40.909 21.09 8.21 46.26 2.15
438 457 0.828762 TCCCGAGGAACCAACTTCGA 60.829 55.000 0.00 0.00 40.80 3.71
448 467 3.698463 AACTTCGACCGTTGCGCG 61.698 61.111 0.00 0.00 40.95 6.86
466 485 0.588233 CGCGCATTAAAGCTGCTGAG 60.588 55.000 8.75 0.00 37.48 3.35
489 508 1.745141 GCTCTTCGCATGGTCCTCATT 60.745 52.381 0.00 0.00 38.92 2.57
502 521 3.630312 GGTCCTCATTGCGGCTATTTAAA 59.370 43.478 0.00 0.00 0.00 1.52
506 525 4.351192 CTCATTGCGGCTATTTAAACCAC 58.649 43.478 0.00 0.00 0.00 4.16
518 537 0.678395 TAAACCACGTGCCGGAGTTA 59.322 50.000 10.91 0.00 0.00 2.24
523 542 0.669318 CACGTGCCGGAGTTACACAT 60.669 55.000 5.05 0.00 33.89 3.21
536 559 3.118261 AGTTACACATAGATGCACCCCTG 60.118 47.826 0.00 0.00 0.00 4.45
570 598 4.862823 CTCCCCTCCCCCGTCTCC 62.863 77.778 0.00 0.00 0.00 3.71
599 629 2.787866 CCTCCCTCCCCCTCTTCA 59.212 66.667 0.00 0.00 0.00 3.02
603 633 1.541368 CCCTCCCCCTCTTCAACCA 60.541 63.158 0.00 0.00 0.00 3.67
639 669 2.933878 AAAGTTGTGGTGCTCCGCGA 62.934 55.000 8.23 8.98 46.30 5.87
642 672 4.961511 TGTGGTGCTCCGCGACAC 62.962 66.667 8.23 13.13 46.30 3.67
643 673 4.961511 GTGGTGCTCCGCGACACA 62.962 66.667 22.28 9.44 38.57 3.72
644 674 4.002506 TGGTGCTCCGCGACACAT 62.003 61.111 22.28 0.00 38.57 3.21
645 675 2.183300 GGTGCTCCGCGACACATA 59.817 61.111 22.28 0.00 38.57 2.29
646 676 2.165301 GGTGCTCCGCGACACATAC 61.165 63.158 22.28 8.77 38.57 2.39
647 677 1.445410 GTGCTCCGCGACACATACA 60.445 57.895 8.23 0.00 36.77 2.29
648 678 1.445410 TGCTCCGCGACACATACAC 60.445 57.895 8.23 0.00 0.00 2.90
649 679 1.445410 GCTCCGCGACACATACACA 60.445 57.895 8.23 0.00 0.00 3.72
650 680 1.683790 GCTCCGCGACACATACACAC 61.684 60.000 8.23 0.00 0.00 3.82
651 681 0.388006 CTCCGCGACACATACACACA 60.388 55.000 8.23 0.00 0.00 3.72
652 682 0.665068 TCCGCGACACATACACACAC 60.665 55.000 8.23 0.00 0.00 3.82
653 683 0.666274 CCGCGACACATACACACACT 60.666 55.000 8.23 0.00 0.00 3.55
654 684 1.401800 CCGCGACACATACACACACTA 60.402 52.381 8.23 0.00 0.00 2.74
655 685 2.526077 CGCGACACATACACACACTAT 58.474 47.619 0.00 0.00 0.00 2.12
656 686 2.921121 CGCGACACATACACACACTATT 59.079 45.455 0.00 0.00 0.00 1.73
657 687 3.366724 CGCGACACATACACACACTATTT 59.633 43.478 0.00 0.00 0.00 1.40
658 688 4.143200 CGCGACACATACACACACTATTTT 60.143 41.667 0.00 0.00 0.00 1.82
659 689 5.613795 CGCGACACATACACACACTATTTTT 60.614 40.000 0.00 0.00 0.00 1.94
682 712 6.875948 TTTTGAGTAATGCATACACACACT 57.124 33.333 0.00 0.00 35.25 3.55
683 713 7.971183 TTTTGAGTAATGCATACACACACTA 57.029 32.000 0.00 0.00 35.25 2.74
684 714 7.595311 TTTGAGTAATGCATACACACACTAG 57.405 36.000 0.00 0.00 35.25 2.57
685 715 6.524101 TGAGTAATGCATACACACACTAGA 57.476 37.500 0.00 0.00 36.94 2.43
686 716 6.930731 TGAGTAATGCATACACACACTAGAA 58.069 36.000 0.00 0.00 36.94 2.10
687 717 7.382898 TGAGTAATGCATACACACACTAGAAA 58.617 34.615 0.00 0.00 36.94 2.52
688 718 7.875554 TGAGTAATGCATACACACACTAGAAAA 59.124 33.333 0.00 0.00 36.94 2.29
689 719 8.792830 AGTAATGCATACACACACTAGAAAAT 57.207 30.769 0.00 0.00 36.94 1.82
690 720 9.231297 AGTAATGCATACACACACTAGAAAATT 57.769 29.630 0.00 0.00 36.94 1.82
691 721 9.277565 GTAATGCATACACACACTAGAAAATTG 57.722 33.333 0.00 0.00 34.46 2.32
692 722 7.686438 ATGCATACACACACTAGAAAATTGA 57.314 32.000 0.00 0.00 0.00 2.57
693 723 6.898041 TGCATACACACACTAGAAAATTGAC 58.102 36.000 0.00 0.00 0.00 3.18
694 724 6.484977 TGCATACACACACTAGAAAATTGACA 59.515 34.615 0.00 0.00 0.00 3.58
695 725 7.174772 TGCATACACACACTAGAAAATTGACAT 59.825 33.333 0.00 0.00 0.00 3.06
696 726 7.482743 GCATACACACACTAGAAAATTGACATG 59.517 37.037 0.00 0.00 0.00 3.21
697 727 6.942532 ACACACACTAGAAAATTGACATGT 57.057 33.333 0.00 0.00 0.00 3.21
698 728 6.959361 ACACACACTAGAAAATTGACATGTC 58.041 36.000 19.27 19.27 0.00 3.06
699 729 6.767902 ACACACACTAGAAAATTGACATGTCT 59.232 34.615 25.55 5.81 0.00 3.41
700 730 7.073883 CACACACTAGAAAATTGACATGTCTG 58.926 38.462 25.55 13.83 0.00 3.51
701 731 6.992123 ACACACTAGAAAATTGACATGTCTGA 59.008 34.615 25.55 14.99 0.00 3.27
702 732 7.041780 ACACACTAGAAAATTGACATGTCTGAC 60.042 37.037 25.55 11.39 0.00 3.51
703 733 6.992123 ACACTAGAAAATTGACATGTCTGACA 59.008 34.615 25.55 13.60 0.00 3.58
704 734 7.663081 ACACTAGAAAATTGACATGTCTGACAT 59.337 33.333 25.55 17.24 39.91 3.06
720 750 7.095270 TGTCTGACATGATCATAGATACATGC 58.905 38.462 8.15 0.00 42.28 4.06
721 751 7.095270 GTCTGACATGATCATAGATACATGCA 58.905 38.462 8.15 0.00 42.28 3.96
722 752 7.063191 GTCTGACATGATCATAGATACATGCAC 59.937 40.741 8.15 0.00 42.28 4.57
723 753 6.761312 TGACATGATCATAGATACATGCACA 58.239 36.000 8.15 0.00 42.28 4.57
724 754 6.647895 TGACATGATCATAGATACATGCACAC 59.352 38.462 8.15 0.00 42.28 3.82
725 755 6.527423 ACATGATCATAGATACATGCACACA 58.473 36.000 8.15 0.00 42.28 3.72
726 756 6.649557 ACATGATCATAGATACATGCACACAG 59.350 38.462 8.15 0.00 42.28 3.66
727 757 6.165700 TGATCATAGATACATGCACACAGT 57.834 37.500 0.00 0.00 0.00 3.55
728 758 7.288810 TGATCATAGATACATGCACACAGTA 57.711 36.000 0.00 0.00 0.00 2.74
729 759 7.373493 TGATCATAGATACATGCACACAGTAG 58.627 38.462 0.00 0.00 0.00 2.57
730 760 6.089249 TCATAGATACATGCACACAGTAGG 57.911 41.667 0.00 0.00 0.00 3.18
731 761 5.598417 TCATAGATACATGCACACAGTAGGT 59.402 40.000 0.00 0.00 0.00 3.08
741 771 2.568623 CACAGTAGGTGGGAGCTTTT 57.431 50.000 0.00 0.00 44.04 2.27
742 772 2.863809 CACAGTAGGTGGGAGCTTTTT 58.136 47.619 0.00 0.00 44.04 1.94
788 818 4.566759 CCTTAAGTGTACACATGATGACCG 59.433 45.833 27.06 1.00 0.00 4.79
795 825 2.903855 CATGATGACCGGCCCAGC 60.904 66.667 0.00 3.04 0.00 4.85
814 844 2.579684 CTAGCCTGGGCCACGAAGAC 62.580 65.000 0.00 0.00 43.17 3.01
850 881 3.910767 CGATACGAATACGGCCTACTTTC 59.089 47.826 0.00 0.00 44.46 2.62
851 882 4.555313 CGATACGAATACGGCCTACTTTCA 60.555 45.833 0.00 0.00 44.46 2.69
934 976 3.465403 CTGCCACTCCCTCCTCCG 61.465 72.222 0.00 0.00 0.00 4.63
947 989 2.266055 CTCCGGGGAAGCTCACAC 59.734 66.667 0.00 0.00 0.00 3.82
952 994 2.358737 GGGAAGCTCACACCCACG 60.359 66.667 11.63 0.00 42.81 4.94
1031 1079 3.075005 CTTCTCCCCCGCTCCGAA 61.075 66.667 0.00 0.00 0.00 4.30
1300 1360 2.204090 CAGGTACCCACACCCCCT 60.204 66.667 8.74 0.00 39.62 4.79
1301 1361 2.124312 AGGTACCCACACCCCCTC 59.876 66.667 8.74 0.00 39.62 4.30
1302 1362 3.013327 GGTACCCACACCCCCTCC 61.013 72.222 0.00 0.00 31.91 4.30
1303 1363 2.124312 GTACCCACACCCCCTCCT 59.876 66.667 0.00 0.00 0.00 3.69
1304 1364 1.993948 GTACCCACACCCCCTCCTC 60.994 68.421 0.00 0.00 0.00 3.71
1305 1365 3.612115 TACCCACACCCCCTCCTCG 62.612 68.421 0.00 0.00 0.00 4.63
1561 1621 6.370526 GGTAAAGCCATGTGACAGTTGTCG 62.371 50.000 7.68 0.00 41.60 4.35
1601 1662 5.584649 TGATCGAATTGCGGATTAACTTCTT 59.415 36.000 0.00 0.00 41.33 2.52
1602 1663 5.873179 TCGAATTGCGGATTAACTTCTTT 57.127 34.783 0.00 0.00 41.33 2.52
1603 1664 5.864986 TCGAATTGCGGATTAACTTCTTTC 58.135 37.500 0.00 0.00 41.33 2.62
1604 1665 5.642063 TCGAATTGCGGATTAACTTCTTTCT 59.358 36.000 0.00 0.00 41.33 2.52
1605 1666 6.814644 TCGAATTGCGGATTAACTTCTTTCTA 59.185 34.615 0.00 0.00 41.33 2.10
1617 1678 6.713731 AACTTCTTTCTACCCCCTCAAATA 57.286 37.500 0.00 0.00 0.00 1.40
1618 1679 6.063496 ACTTCTTTCTACCCCCTCAAATAC 57.937 41.667 0.00 0.00 0.00 1.89
1619 1680 5.791141 ACTTCTTTCTACCCCCTCAAATACT 59.209 40.000 0.00 0.00 0.00 2.12
1620 1681 6.964086 ACTTCTTTCTACCCCCTCAAATACTA 59.036 38.462 0.00 0.00 0.00 1.82
1621 1682 7.125963 ACTTCTTTCTACCCCCTCAAATACTAG 59.874 40.741 0.00 0.00 0.00 2.57
1622 1683 6.509386 TCTTTCTACCCCCTCAAATACTAGT 58.491 40.000 0.00 0.00 0.00 2.57
1623 1684 6.610425 TCTTTCTACCCCCTCAAATACTAGTC 59.390 42.308 0.00 0.00 0.00 2.59
1624 1685 5.476950 TCTACCCCCTCAAATACTAGTCA 57.523 43.478 0.00 0.00 0.00 3.41
1625 1686 5.455872 TCTACCCCCTCAAATACTAGTCAG 58.544 45.833 0.00 0.00 0.00 3.51
1626 1687 4.076175 ACCCCCTCAAATACTAGTCAGT 57.924 45.455 0.00 0.00 38.91 3.41
1627 1688 3.775316 ACCCCCTCAAATACTAGTCAGTG 59.225 47.826 0.00 0.00 36.14 3.66
1628 1689 3.134804 CCCCCTCAAATACTAGTCAGTGG 59.865 52.174 0.00 0.00 36.14 4.00
1629 1690 4.030913 CCCCTCAAATACTAGTCAGTGGA 58.969 47.826 0.00 0.00 36.14 4.02
1630 1691 4.469945 CCCCTCAAATACTAGTCAGTGGAA 59.530 45.833 0.00 0.00 36.14 3.53
1631 1692 5.131142 CCCCTCAAATACTAGTCAGTGGAAT 59.869 44.000 0.00 0.00 36.14 3.01
1632 1693 6.326583 CCCCTCAAATACTAGTCAGTGGAATA 59.673 42.308 0.00 0.00 36.14 1.75
1633 1694 7.147549 CCCCTCAAATACTAGTCAGTGGAATAA 60.148 40.741 0.00 0.00 36.14 1.40
1634 1695 7.711339 CCCTCAAATACTAGTCAGTGGAATAAC 59.289 40.741 0.00 0.00 36.14 1.89
1635 1696 8.478877 CCTCAAATACTAGTCAGTGGAATAACT 58.521 37.037 0.00 0.00 36.14 2.24
1676 1761 5.679734 ATATTTAGCTCGAAATGGCAGTG 57.320 39.130 4.95 0.00 31.51 3.66
1683 1768 2.151202 TCGAAATGGCAGTGAAAGGTC 58.849 47.619 0.00 0.00 0.00 3.85
1686 1771 3.642705 GAAATGGCAGTGAAAGGTCAAC 58.357 45.455 0.00 0.00 34.87 3.18
1782 1877 5.078411 GCTATGTGCAGCTATATGGTACT 57.922 43.478 0.00 0.00 42.31 2.73
1783 1878 5.482908 GCTATGTGCAGCTATATGGTACTT 58.517 41.667 0.00 0.00 42.31 2.24
1784 1879 5.349817 GCTATGTGCAGCTATATGGTACTTG 59.650 44.000 0.00 0.00 42.31 3.16
1785 1880 5.551305 ATGTGCAGCTATATGGTACTTGA 57.449 39.130 0.00 0.00 0.00 3.02
1786 1881 5.351948 TGTGCAGCTATATGGTACTTGAA 57.648 39.130 0.00 0.00 0.00 2.69
1787 1882 5.739959 TGTGCAGCTATATGGTACTTGAAA 58.260 37.500 0.00 0.00 0.00 2.69
1812 1907 5.783111 TGAAATGACTCACTTCTTCGATGA 58.217 37.500 2.16 0.00 0.00 2.92
1890 1986 3.589988 GGCGAGAGAGATTGAACAGAAA 58.410 45.455 0.00 0.00 0.00 2.52
1909 2005 6.091169 ACAGAAAGTGAAATGCTTGTTTTGTG 59.909 34.615 0.00 0.00 0.00 3.33
1938 2034 5.746284 AGCTTATTAGTTGGAAGAACCTCC 58.254 41.667 0.00 0.00 39.86 4.30
2049 2145 1.045407 TAGAACCCGCACTCTGTGTT 58.955 50.000 0.00 0.00 35.75 3.32
2067 2163 1.066929 GTTGGAAATGATGGTGGTGCC 60.067 52.381 0.00 0.00 37.90 5.01
2134 2230 7.035004 TGTGTCTTTGATTGAAAAGGTTTCTG 58.965 34.615 2.68 0.00 37.67 3.02
2146 2242 8.980481 TGAAAAGGTTTCTGATCTAGAACTTT 57.020 30.769 0.00 10.25 44.84 2.66
2184 2280 5.568620 AGTGTGGTTAGAAGAATCCTTGT 57.431 39.130 0.00 0.00 31.62 3.16
2340 2436 2.423185 CTGTTGGTGAACACAAGAGCAA 59.577 45.455 7.25 0.00 37.15 3.91
2428 2524 1.559682 TCACCCTGTTAGGATGCCTTC 59.440 52.381 0.00 0.00 37.67 3.46
2438 2534 7.040823 CCTGTTAGGATGCCTTCTCATTTATTC 60.041 40.741 0.00 0.00 37.67 1.75
2469 2565 8.632679 GCCATTTCCATTCTTCTGTATTATTGA 58.367 33.333 0.00 0.00 0.00 2.57
2575 2671 2.003301 GCTACTGTAGTTGCTTCTGGC 58.997 52.381 15.71 0.00 42.12 4.85
2606 2702 4.448210 TCGGTCCTTATTGCATAGTTTCC 58.552 43.478 0.00 0.00 0.00 3.13
2720 3192 9.942850 AAATATTTCGATTGATTTTCCTGGTTT 57.057 25.926 0.00 0.00 0.00 3.27
2885 3357 5.973651 ATTCACATAGCATACACTTGTCG 57.026 39.130 0.00 0.00 0.00 4.35
2898 3370 3.250762 ACACTTGTCGTCAACATCCAATG 59.749 43.478 0.00 0.00 37.82 2.82
2987 3459 9.535878 GTTTTAGGTGATCTATAGAGTCCAAAG 57.464 37.037 8.70 0.00 0.00 2.77
3069 3541 6.475504 TGGATGAGTAGATCAAGCTTTTTCA 58.524 36.000 0.00 0.00 42.53 2.69
3143 3617 8.514136 TTTTTCGCCAACTATGTTAGAAAATG 57.486 30.769 14.67 0.00 34.44 2.32
3151 3625 8.960591 CCAACTATGTTAGAAAATGTGAATCCT 58.039 33.333 0.00 0.00 0.00 3.24
3272 3747 4.648307 GGAGAATTCTTTCCTGCCATCAAT 59.352 41.667 9.87 0.00 31.84 2.57
3377 3852 8.353423 ACAACAAAATAGTGCCTCAAAGATAT 57.647 30.769 0.00 0.00 0.00 1.63
3458 3933 1.000396 GCCTGATGGGAAGCCAGTT 60.000 57.895 0.00 0.00 37.23 3.16
3540 4015 2.736144 TGCTTTGGTAAGTCGATCGT 57.264 45.000 15.94 0.00 33.74 3.73
3569 4044 4.321974 CCTGCTCCAGTTAATGTTTTTCCC 60.322 45.833 0.00 0.00 0.00 3.97
3574 4049 6.570571 GCTCCAGTTAATGTTTTTCCCTCTTC 60.571 42.308 0.00 0.00 0.00 2.87
3631 4106 2.496899 TTTCCATGCTCCTGGAGAAC 57.503 50.000 27.53 10.95 45.80 3.01
3659 4134 1.068127 GCAGCAAAGATAGCCCCATTG 59.932 52.381 0.00 0.00 0.00 2.82
3698 4173 4.202050 GGAGTGTTCCCATTCATTGCATAC 60.202 45.833 0.00 0.00 37.53 2.39
3704 4179 7.436080 GTGTTCCCATTCATTGCATACAATTAG 59.564 37.037 0.00 0.00 44.21 1.73
3799 4277 3.119849 GCATGCGGGTATCATATTCCAAC 60.120 47.826 0.00 0.00 0.00 3.77
3827 4305 8.200024 AGATAGAGTAAACCATATGTCAGCAT 57.800 34.615 1.24 0.00 39.03 3.79
3857 4335 4.586001 TGCTTTCTTTTTGAGCCTCTTCAT 59.414 37.500 0.00 0.00 35.59 2.57
4001 4479 1.814394 GTTGTGCATGATCAAGCTCCA 59.186 47.619 22.26 15.86 0.00 3.86
4034 4512 8.718102 AGATAATGTGTCGTTTACTTGCTAAT 57.282 30.769 0.00 0.00 0.00 1.73
4035 4513 9.811995 AGATAATGTGTCGTTTACTTGCTAATA 57.188 29.630 0.00 0.00 0.00 0.98
4039 4517 7.067532 TGTGTCGTTTACTTGCTAATATTGG 57.932 36.000 0.00 0.00 0.00 3.16
4040 4518 5.963586 GTGTCGTTTACTTGCTAATATTGGC 59.036 40.000 16.27 16.27 34.98 4.52
4041 4519 5.644206 TGTCGTTTACTTGCTAATATTGGCA 59.356 36.000 21.19 21.19 43.14 4.92
4042 4520 6.317642 TGTCGTTTACTTGCTAATATTGGCAT 59.682 34.615 24.82 14.77 44.25 4.40
4043 4521 7.148154 TGTCGTTTACTTGCTAATATTGGCATT 60.148 33.333 24.82 17.46 44.25 3.56
4044 4522 7.376072 GTCGTTTACTTGCTAATATTGGCATTC 59.624 37.037 24.82 11.79 44.25 2.67
4045 4523 7.282224 TCGTTTACTTGCTAATATTGGCATTCT 59.718 33.333 24.82 13.50 44.25 2.40
4046 4524 7.376866 CGTTTACTTGCTAATATTGGCATTCTG 59.623 37.037 24.82 17.17 44.25 3.02
4047 4525 8.405531 GTTTACTTGCTAATATTGGCATTCTGA 58.594 33.333 24.82 10.53 44.25 3.27
4048 4526 8.518430 TTACTTGCTAATATTGGCATTCTGAA 57.482 30.769 24.82 13.05 44.25 3.02
4049 4527 6.799512 ACTTGCTAATATTGGCATTCTGAAC 58.200 36.000 24.82 0.00 44.25 3.18
4050 4528 5.772825 TGCTAATATTGGCATTCTGAACC 57.227 39.130 21.19 0.00 39.85 3.62
4051 4529 4.584325 TGCTAATATTGGCATTCTGAACCC 59.416 41.667 21.19 0.00 39.85 4.11
4052 4530 4.584325 GCTAATATTGGCATTCTGAACCCA 59.416 41.667 17.98 7.35 34.50 4.51
4053 4531 5.244626 GCTAATATTGGCATTCTGAACCCAT 59.755 40.000 17.98 1.89 34.50 4.00
4054 4532 5.796424 AATATTGGCATTCTGAACCCATC 57.204 39.130 11.12 0.00 0.00 3.51
4055 4533 2.905415 TTGGCATTCTGAACCCATCT 57.095 45.000 11.12 0.00 0.00 2.90
4056 4534 4.524802 ATTGGCATTCTGAACCCATCTA 57.475 40.909 11.12 0.18 0.00 1.98
4057 4535 3.281727 TGGCATTCTGAACCCATCTAC 57.718 47.619 7.35 0.00 0.00 2.59
4058 4536 2.092429 TGGCATTCTGAACCCATCTACC 60.092 50.000 7.35 0.00 0.00 3.18
4174 4661 4.144297 ACACACAGTTGCTTGATATGGTT 58.856 39.130 0.00 0.00 0.00 3.67
4320 4807 1.732259 GGTACTGCTGAAATGGTGACG 59.268 52.381 0.00 0.00 0.00 4.35
4321 4808 2.611971 GGTACTGCTGAAATGGTGACGA 60.612 50.000 0.00 0.00 0.00 4.20
4402 4889 7.757242 AGATTTTCAGGTAATTCTACTCCCT 57.243 36.000 0.00 0.00 0.00 4.20
4403 4890 7.797062 AGATTTTCAGGTAATTCTACTCCCTC 58.203 38.462 0.00 0.00 0.00 4.30
4404 4891 5.952347 TTTCAGGTAATTCTACTCCCTCC 57.048 43.478 0.00 0.00 0.00 4.30
4405 4892 3.563223 TCAGGTAATTCTACTCCCTCCG 58.437 50.000 0.00 0.00 0.00 4.63
4406 4893 3.053095 TCAGGTAATTCTACTCCCTCCGT 60.053 47.826 0.00 0.00 0.00 4.69
4407 4894 3.318557 CAGGTAATTCTACTCCCTCCGTC 59.681 52.174 0.00 0.00 0.00 4.79
4408 4895 2.627221 GGTAATTCTACTCCCTCCGTCC 59.373 54.545 0.00 0.00 0.00 4.79
4409 4896 1.790818 AATTCTACTCCCTCCGTCCC 58.209 55.000 0.00 0.00 0.00 4.46
4410 4897 0.635009 ATTCTACTCCCTCCGTCCCA 59.365 55.000 0.00 0.00 0.00 4.37
4411 4898 0.635009 TTCTACTCCCTCCGTCCCAT 59.365 55.000 0.00 0.00 0.00 4.00
4412 4899 1.526315 TCTACTCCCTCCGTCCCATA 58.474 55.000 0.00 0.00 0.00 2.74
4413 4900 1.854939 TCTACTCCCTCCGTCCCATAA 59.145 52.381 0.00 0.00 0.00 1.90
4414 4901 2.449730 TCTACTCCCTCCGTCCCATAAT 59.550 50.000 0.00 0.00 0.00 1.28
4415 4902 3.659195 TCTACTCCCTCCGTCCCATAATA 59.341 47.826 0.00 0.00 0.00 0.98
4416 4903 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
4417 4904 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
4418 4905 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
4419 4906 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
4420 4907 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
4421 4908 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
4422 4909 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
4423 4910 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
4424 4911 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
4425 4912 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
4426 4913 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
4427 4914 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
4428 4915 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
4453 4940 3.303406 ACTACAGTAGTGTCGAAAACGC 58.697 45.455 12.75 0.00 37.69 4.84
4455 4942 2.391879 ACAGTAGTGTCGAAAACGCTC 58.608 47.619 0.00 0.00 45.69 5.03
4456 4943 2.034305 ACAGTAGTGTCGAAAACGCTCT 59.966 45.455 0.00 0.00 45.69 4.09
4457 4944 3.050619 CAGTAGTGTCGAAAACGCTCTT 58.949 45.455 0.00 0.00 45.69 2.85
4458 4945 4.224433 CAGTAGTGTCGAAAACGCTCTTA 58.776 43.478 0.00 0.00 45.69 2.10
4459 4946 4.857588 CAGTAGTGTCGAAAACGCTCTTAT 59.142 41.667 0.00 0.00 45.69 1.73
4460 4947 6.025896 CAGTAGTGTCGAAAACGCTCTTATA 58.974 40.000 0.00 0.00 45.69 0.98
4461 4948 6.691818 CAGTAGTGTCGAAAACGCTCTTATAT 59.308 38.462 0.00 0.00 45.69 0.86
4462 4949 7.220300 CAGTAGTGTCGAAAACGCTCTTATATT 59.780 37.037 0.00 0.00 45.69 1.28
4463 4950 6.332504 AGTGTCGAAAACGCTCTTATATTG 57.667 37.500 0.00 0.00 45.69 1.90
4464 4951 5.867716 AGTGTCGAAAACGCTCTTATATTGT 59.132 36.000 0.00 0.00 45.69 2.71
4465 4952 5.952064 GTGTCGAAAACGCTCTTATATTGTG 59.048 40.000 0.00 0.00 35.42 3.33
4466 4953 5.062934 TGTCGAAAACGCTCTTATATTGTGG 59.937 40.000 0.00 0.00 0.00 4.17
4467 4954 4.569162 TCGAAAACGCTCTTATATTGTGGG 59.431 41.667 0.00 0.00 0.00 4.61
4468 4955 4.569162 CGAAAACGCTCTTATATTGTGGGA 59.431 41.667 0.00 0.00 0.00 4.37
4469 4956 5.501897 CGAAAACGCTCTTATATTGTGGGAC 60.502 44.000 0.00 0.00 0.00 4.46
4470 4957 3.093717 ACGCTCTTATATTGTGGGACG 57.906 47.619 0.00 0.00 0.00 4.79
4471 4958 2.223971 ACGCTCTTATATTGTGGGACGG 60.224 50.000 0.00 0.00 0.00 4.79
4472 4959 2.035449 CGCTCTTATATTGTGGGACGGA 59.965 50.000 0.00 0.00 0.00 4.69
4473 4960 3.654414 GCTCTTATATTGTGGGACGGAG 58.346 50.000 0.00 0.00 0.00 4.63
4474 4961 3.555168 GCTCTTATATTGTGGGACGGAGG 60.555 52.174 0.00 0.00 0.00 4.30
4475 4962 2.969950 TCTTATATTGTGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
4476 4963 2.779429 TATATTGTGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
4477 4964 1.424638 ATATTGTGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
4478 4965 0.042131 TATTGTGGGACGGAGGGAGT 59.958 55.000 0.00 0.00 0.00 3.85
4479 4966 0.042131 ATTGTGGGACGGAGGGAGTA 59.958 55.000 0.00 0.00 0.00 2.59
4480 4967 0.178926 TTGTGGGACGGAGGGAGTAA 60.179 55.000 0.00 0.00 0.00 2.24
4481 4968 0.042131 TGTGGGACGGAGGGAGTAAT 59.958 55.000 0.00 0.00 0.00 1.89
4482 4969 1.288633 TGTGGGACGGAGGGAGTAATA 59.711 52.381 0.00 0.00 0.00 0.98
4483 4970 2.292389 TGTGGGACGGAGGGAGTAATAA 60.292 50.000 0.00 0.00 0.00 1.40
4484 4971 2.767960 GTGGGACGGAGGGAGTAATAAA 59.232 50.000 0.00 0.00 0.00 1.40
4485 4972 2.767960 TGGGACGGAGGGAGTAATAAAC 59.232 50.000 0.00 0.00 0.00 2.01
4486 4973 2.767960 GGGACGGAGGGAGTAATAAACA 59.232 50.000 0.00 0.00 0.00 2.83
4487 4974 3.431346 GGGACGGAGGGAGTAATAAACAC 60.431 52.174 0.00 0.00 0.00 3.32
4499 4986 7.365831 GGGAGTAATAAACACCATGGTAACCTA 60.366 40.741 19.28 7.32 40.39 3.08
4627 5299 1.589731 CGCGTATCAGTTCATTGCACG 60.590 52.381 0.00 0.00 32.76 5.34
4646 5318 4.508124 GCACGAAGTATACTGGATGGAAAG 59.492 45.833 6.06 0.00 41.61 2.62
4647 5319 5.050490 CACGAAGTATACTGGATGGAAAGG 58.950 45.833 6.06 0.00 41.61 3.11
4668 5343 0.038343 TGCTCCTTTTGGCAATTCGC 60.038 50.000 0.00 0.76 40.12 4.70
4690 5365 6.649973 TCGCAATGTTGATCCATGAAATTTTT 59.350 30.769 0.00 0.00 0.00 1.94
4691 5366 7.816513 TCGCAATGTTGATCCATGAAATTTTTA 59.183 29.630 0.00 0.00 0.00 1.52
4780 5455 5.560724 CTTTTCTTCCCTTACATCTGTCCA 58.439 41.667 0.00 0.00 0.00 4.02
4838 5513 9.974980 GAAATATTTTGGTTTCAGTACAAAGGA 57.025 29.630 1.43 0.00 35.74 3.36
4844 5519 3.120304 GGTTTCAGTACAAAGGACGATGC 60.120 47.826 0.00 0.00 0.00 3.91
4868 5543 1.682854 TGGGTTTTCTGCTTCTGCTTG 59.317 47.619 0.00 0.00 40.48 4.01
4901 5576 0.251916 TCCGAGCAACTGGGTTATGG 59.748 55.000 0.00 0.00 31.18 2.74
4935 5618 1.920351 TCCTCCAAACCCAGTAATCCC 59.080 52.381 0.00 0.00 0.00 3.85
5019 5702 2.421424 GCTGCTTGGATCGATCTTGTTT 59.579 45.455 23.96 0.00 0.00 2.83
5027 5710 7.539712 TTGGATCGATCTTGTTTCATAGAAC 57.460 36.000 23.96 3.75 0.00 3.01
5030 5713 6.422400 GGATCGATCTTGTTTCATAGAACTCC 59.578 42.308 23.96 0.00 0.00 3.85
5036 5719 3.334691 TGTTTCATAGAACTCCTTGGCG 58.665 45.455 0.00 0.00 0.00 5.69
5068 5769 3.243636 ACTGAGGTTGCTGAAATTTGCTG 60.244 43.478 0.00 0.00 0.00 4.41
5123 5824 4.202233 TGAGCCAGATCTCATCATCACTTC 60.202 45.833 0.00 0.00 38.11 3.01
5198 5899 9.201989 TGTCAGTTATCCTATAGAAGAATGTGT 57.798 33.333 0.00 0.00 0.00 3.72
5242 5943 1.707106 CCCATGGATGGCAGCAATAA 58.293 50.000 15.22 0.00 46.70 1.40
5245 5946 2.696707 CCATGGATGGCAGCAATAAGTT 59.303 45.455 5.56 0.00 41.75 2.66
5354 6055 5.516090 TGTTGTTGATTTACGCTTCTTTCC 58.484 37.500 0.00 0.00 0.00 3.13
5398 6099 3.572255 TCAAACATTAGTTGGCACTTCCC 59.428 43.478 0.00 0.00 38.17 3.97
5407 6108 1.218316 GGCACTTCCCGAGAACGAT 59.782 57.895 0.00 0.00 42.66 3.73
5418 6119 1.078426 AGAACGATGGGGGAAAGCG 60.078 57.895 0.00 0.00 0.00 4.68
5423 6124 1.148498 GATGGGGGAAAGCGGGTAG 59.852 63.158 0.00 0.00 0.00 3.18
5488 6192 8.512138 CCGTCTACAGTTTCAGGATTTAAAATT 58.488 33.333 0.00 0.00 0.00 1.82
5527 6231 7.938140 ACAATCCAGCTAGCTTAAAATTACA 57.062 32.000 16.46 0.00 0.00 2.41
5533 6329 7.779798 TCCAGCTAGCTTAAAATTACATTGGAT 59.220 33.333 16.46 0.00 0.00 3.41
5590 6386 3.766051 AGGATTCAAAATCAGCAAGGTCC 59.234 43.478 2.42 0.00 0.00 4.46
5597 6393 2.206576 ATCAGCAAGGTCCACTTTCC 57.793 50.000 0.00 0.00 37.29 3.13
5601 6397 1.494721 AGCAAGGTCCACTTTCCTGAA 59.505 47.619 0.00 0.00 37.29 3.02
5689 6493 7.060979 GTGTCAACGTCACGTATAATGTCTTTA 59.939 37.037 1.57 0.00 39.99 1.85
5691 6495 7.889712 GTCAACGTCACGTATAATGTCTTTAAC 59.110 37.037 1.57 0.00 39.99 2.01
5716 6520 0.833287 GCTCATCTGGGCCTAGTTCA 59.167 55.000 16.69 0.00 0.00 3.18
5805 6609 4.537135 TGAAAGCTTCAGGTAGGTACTG 57.463 45.455 0.00 0.00 34.75 2.74
5932 6736 7.979537 TGTTAGAACATAATGTAGCTCGTGATT 59.020 33.333 0.00 0.00 33.17 2.57
5952 6756 7.253288 CGTGATTAATACTTGGTTTCAATTGCG 60.253 37.037 0.00 0.00 31.75 4.85
5965 6769 3.386486 TCAATTGCGTTTAGACTCGTGT 58.614 40.909 0.00 0.00 0.00 4.49
5997 6801 4.446371 GAAAGCTAGATATGTGCCACTGT 58.554 43.478 0.00 0.00 0.00 3.55
6030 6834 1.768275 TGTGAGATATGCCCCACGAAT 59.232 47.619 0.00 0.00 32.58 3.34
6032 6836 2.808543 GTGAGATATGCCCCACGAATTC 59.191 50.000 0.00 0.00 0.00 2.17
6034 6838 1.774254 AGATATGCCCCACGAATTCCA 59.226 47.619 0.00 0.00 0.00 3.53
6035 6839 1.880027 GATATGCCCCACGAATTCCAC 59.120 52.381 0.00 0.00 0.00 4.02
6036 6840 0.916086 TATGCCCCACGAATTCCACT 59.084 50.000 0.00 0.00 0.00 4.00
6109 6914 7.068348 GGAATACCCCTCTAAATGGAAGAAAAC 59.932 40.741 0.00 0.00 0.00 2.43
6175 6981 5.336213 GCCTCACAATGTCATCTGAAACAAT 60.336 40.000 1.12 0.00 0.00 2.71
6187 6993 7.649306 GTCATCTGAAACAATTACAGCAAGTTT 59.351 33.333 0.00 0.00 35.33 2.66
6200 7006 1.065551 GCAAGTTTGCGGAGTCAGTTT 59.934 47.619 0.53 0.00 45.11 2.66
6204 7010 2.614057 AGTTTGCGGAGTCAGTTTTCAG 59.386 45.455 0.00 0.00 0.00 3.02
6215 7021 6.987404 GGAGTCAGTTTTCAGAAGTAGAACTT 59.013 38.462 0.00 0.00 41.95 2.66
6223 7029 5.700722 TCAGAAGTAGAACTTTGTAGCGA 57.299 39.130 0.00 0.00 38.80 4.93
6231 7037 7.773149 AGTAGAACTTTGTAGCGACATATCTT 58.227 34.615 0.00 0.00 34.86 2.40
6240 7046 4.322080 AGCGACATATCTTGGAATCGAA 57.678 40.909 0.00 0.00 0.00 3.71
6242 7048 6.025749 AGCGACATATCTTGGAATCGAATA 57.974 37.500 0.00 0.00 0.00 1.75
6284 7090 7.377766 TCTAGATTTCCCAGAACATTTTTCG 57.622 36.000 0.00 0.00 0.00 3.46
6301 7107 3.536158 TTCGTTGCATTTGTACAGCTC 57.464 42.857 7.07 0.88 0.00 4.09
6302 7108 2.766313 TCGTTGCATTTGTACAGCTCT 58.234 42.857 7.07 0.00 0.00 4.09
6345 7151 3.718434 AGCTTCCACTATCCCAATCATCA 59.282 43.478 0.00 0.00 0.00 3.07
6348 7154 5.879223 GCTTCCACTATCCCAATCATCATAG 59.121 44.000 0.00 0.00 0.00 2.23
6352 7158 6.905215 TCCACTATCCCAATCATCATAGCTAT 59.095 38.462 0.00 0.00 0.00 2.97
6360 7166 7.779326 TCCCAATCATCATAGCTATTTTGTTCA 59.221 33.333 2.64 0.00 0.00 3.18
6384 7190 3.795561 AAGAGAGCAATGAAAACGTCG 57.204 42.857 0.00 0.00 0.00 5.12
6513 7319 0.971386 TACCGTCCTTGTCCTTGTCC 59.029 55.000 0.00 0.00 0.00 4.02
6530 7336 6.494491 TCCTTGTCCATCATTTGAAACATCTT 59.506 34.615 0.00 0.00 0.00 2.40
6552 7358 3.958018 AGTGTAGTTCTCGATGTCCTCT 58.042 45.455 0.00 0.00 0.00 3.69
6554 7360 3.017442 TGTAGTTCTCGATGTCCTCTGG 58.983 50.000 0.00 0.00 0.00 3.86
6607 7413 5.956068 TCATTGGAAAATGATTCACGTCA 57.044 34.783 0.00 0.00 34.50 4.35
6647 7453 8.912988 ACTGGAAGAAAAATCAAGAACAATGTA 58.087 29.630 0.00 0.00 37.43 2.29
6657 7463 1.628846 AGAACAATGTAGCCCGGTTCT 59.371 47.619 0.00 0.00 42.29 3.01
6702 7508 6.476706 CCTTCTTTTTGAACTTGTTCATGGAC 59.523 38.462 15.67 0.00 0.00 4.02
6733 7539 1.021390 AAGCCTGGATCGAACAAGCG 61.021 55.000 0.00 0.00 30.81 4.68
6741 7547 1.639298 ATCGAACAAGCGCTCCAAGC 61.639 55.000 12.06 0.00 38.02 4.01
6773 7579 2.840974 CCTTGTCGGCGTTCTTGAT 58.159 52.632 6.85 0.00 0.00 2.57
6788 7594 0.178767 TTGATCCACGGATGCTCTGG 59.821 55.000 2.54 0.00 34.60 3.86
6799 7605 2.025155 GATGCTCTGGTTCGTAGGAGA 58.975 52.381 0.00 0.00 0.00 3.71
6806 7615 5.382618 TCTGGTTCGTAGGAGAAGTTAAC 57.617 43.478 0.00 0.00 0.00 2.01
6916 7753 6.625362 TGTGAACTTGTAGCAAATTTGTGAA 58.375 32.000 19.03 6.59 0.00 3.18
6937 7774 6.202570 GTGAATGCATATTGTGTTTGTTTGGT 59.797 34.615 0.00 0.00 0.00 3.67
6938 7775 6.765036 TGAATGCATATTGTGTTTGTTTGGTT 59.235 30.769 0.00 0.00 0.00 3.67
6941 7778 5.204101 GCATATTGTGTTTGTTTGGTTTGC 58.796 37.500 0.00 0.00 0.00 3.68
6944 7781 1.347707 TGTGTTTGTTTGGTTTGCCCA 59.652 42.857 0.00 0.00 43.27 5.36
7088 7925 1.445095 CCATGGCTCCCTCTCGAAG 59.555 63.158 0.00 0.00 0.00 3.79
7151 7988 4.467084 TCTGCGCCCGGTTCATCC 62.467 66.667 4.18 0.00 0.00 3.51
7178 8015 1.843368 AAATCACATGAGCACTGGGG 58.157 50.000 0.00 0.00 0.00 4.96
7179 8016 0.700564 AATCACATGAGCACTGGGGT 59.299 50.000 0.00 0.00 0.00 4.95
7214 8051 3.359950 GAGGAATGGACCTGCATTCTTT 58.640 45.455 16.32 7.74 40.73 2.52
7215 8052 3.359950 AGGAATGGACCTGCATTCTTTC 58.640 45.455 16.32 3.71 39.01 2.62
7216 8053 3.091545 GGAATGGACCTGCATTCTTTCA 58.908 45.455 16.32 0.00 37.79 2.69
7217 8054 3.703052 GGAATGGACCTGCATTCTTTCAT 59.297 43.478 16.32 0.00 37.79 2.57
7218 8055 4.441079 GGAATGGACCTGCATTCTTTCATG 60.441 45.833 16.32 0.00 37.79 3.07
7272 8109 2.358737 CACGCACCTCCCCAGAAC 60.359 66.667 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.026718 CAACTCCAATGGGGCGACTC 61.027 60.000 0.00 0.00 36.21 3.36
3 4 1.002134 CAACTCCAATGGGGCGACT 60.002 57.895 0.00 0.00 36.21 4.18
4 5 2.700773 GCAACTCCAATGGGGCGAC 61.701 63.158 0.00 0.00 36.21 5.19
6 7 2.361610 AGCAACTCCAATGGGGCG 60.362 61.111 0.00 0.00 36.21 6.13
7 8 0.613012 AAGAGCAACTCCAATGGGGC 60.613 55.000 0.00 0.00 36.21 5.80
8 9 2.648059 CTAAGAGCAACTCCAATGGGG 58.352 52.381 0.00 0.00 38.37 4.96
10 11 2.648059 CCCTAAGAGCAACTCCAATGG 58.352 52.381 0.00 0.00 0.00 3.16
12 13 1.635487 TGCCCTAAGAGCAACTCCAAT 59.365 47.619 0.00 0.00 37.28 3.16
13 14 1.064003 TGCCCTAAGAGCAACTCCAA 58.936 50.000 0.00 0.00 37.28 3.53
14 15 1.210478 GATGCCCTAAGAGCAACTCCA 59.790 52.381 0.00 0.00 44.83 3.86
15 16 1.488393 AGATGCCCTAAGAGCAACTCC 59.512 52.381 0.00 0.00 44.83 3.85
16 17 2.998316 AGATGCCCTAAGAGCAACTC 57.002 50.000 0.00 0.00 44.83 3.01
17 18 2.573462 TGAAGATGCCCTAAGAGCAACT 59.427 45.455 0.00 0.00 44.23 3.16
18 19 2.991250 TGAAGATGCCCTAAGAGCAAC 58.009 47.619 0.00 0.00 44.83 4.17
19 20 3.614092 CTTGAAGATGCCCTAAGAGCAA 58.386 45.455 0.00 0.00 44.83 3.91
20 21 2.092753 CCTTGAAGATGCCCTAAGAGCA 60.093 50.000 0.00 0.00 45.94 4.26
23 24 1.134401 CGCCTTGAAGATGCCCTAAGA 60.134 52.381 0.00 0.00 0.00 2.10
54 55 1.002888 AGTCTGAACGGTCGTAGGAGA 59.997 52.381 0.00 0.00 0.00 3.71
59 60 1.208358 CGCAGTCTGAACGGTCGTA 59.792 57.895 3.32 0.00 0.00 3.43
60 61 2.050351 CGCAGTCTGAACGGTCGT 60.050 61.111 3.32 0.00 0.00 4.34
62 63 2.049063 AGCGCAGTCTGAACGGTC 60.049 61.111 11.47 0.00 30.78 4.79
64 65 2.356313 ACAGCGCAGTCTGAACGG 60.356 61.111 11.47 0.00 36.01 4.44
65 66 2.375766 GGACAGCGCAGTCTGAACG 61.376 63.158 28.64 0.00 38.57 3.95
66 67 2.375766 CGGACAGCGCAGTCTGAAC 61.376 63.158 31.46 14.94 45.66 3.18
67 68 2.049156 CGGACAGCGCAGTCTGAA 60.049 61.111 31.46 0.00 45.66 3.02
69 70 2.049156 TTCGGACAGCGCAGTCTG 60.049 61.111 29.88 29.88 44.46 3.51
70 71 1.241990 TAGTTCGGACAGCGCAGTCT 61.242 55.000 28.64 13.76 38.57 3.24
71 72 1.071567 GTAGTTCGGACAGCGCAGTC 61.072 60.000 23.29 23.29 37.80 3.51
72 73 1.080705 GTAGTTCGGACAGCGCAGT 60.081 57.895 11.47 8.04 0.00 4.40
73 74 0.666274 TTGTAGTTCGGACAGCGCAG 60.666 55.000 11.47 3.33 0.00 5.18
74 75 0.249531 TTTGTAGTTCGGACAGCGCA 60.250 50.000 11.47 0.00 0.00 6.09
75 76 0.863144 TTTTGTAGTTCGGACAGCGC 59.137 50.000 0.00 0.00 0.00 5.92
76 77 2.132762 ACTTTTGTAGTTCGGACAGCG 58.867 47.619 0.00 0.00 31.29 5.18
77 78 3.128349 TGACTTTTGTAGTTCGGACAGC 58.872 45.455 0.00 0.00 37.17 4.40
96 111 4.122046 CGATACAAGTCAGCATTGGATGA 58.878 43.478 0.00 0.00 37.03 2.92
142 157 3.555956 TGTCTTCAGTTTGCGAGAGAAAC 59.444 43.478 0.00 0.00 33.96 2.78
157 172 8.303876 AGCAAACTTTTCTTACTTTTGTCTTCA 58.696 29.630 0.00 0.00 31.19 3.02
159 174 7.545615 CCAGCAAACTTTTCTTACTTTTGTCTT 59.454 33.333 0.00 0.00 31.19 3.01
167 182 3.889538 GACCCCAGCAAACTTTTCTTACT 59.110 43.478 0.00 0.00 0.00 2.24
170 185 2.039418 GGACCCCAGCAAACTTTTCTT 58.961 47.619 0.00 0.00 0.00 2.52
171 186 1.704641 GGACCCCAGCAAACTTTTCT 58.295 50.000 0.00 0.00 0.00 2.52
173 188 1.112916 CCGGACCCCAGCAAACTTTT 61.113 55.000 0.00 0.00 0.00 2.27
174 189 1.530655 CCGGACCCCAGCAAACTTT 60.531 57.895 0.00 0.00 0.00 2.66
176 191 2.852075 TCCGGACCCCAGCAAACT 60.852 61.111 0.00 0.00 0.00 2.66
186 201 2.662070 TTTGGGATCGGTCCGGACC 61.662 63.158 39.19 39.19 46.09 4.46
204 219 2.597510 GGCCAGTCAAAAGCGGGT 60.598 61.111 0.00 0.00 0.00 5.28
212 227 1.300963 GATGAGCCAGGCCAGTCAA 59.699 57.895 8.22 0.00 0.00 3.18
217 232 0.968405 GTTTTTGATGAGCCAGGCCA 59.032 50.000 8.22 6.43 0.00 5.36
219 234 1.067354 CAGGTTTTTGATGAGCCAGGC 60.067 52.381 1.84 1.84 0.00 4.85
226 241 1.962807 CAGGTGGCAGGTTTTTGATGA 59.037 47.619 0.00 0.00 0.00 2.92
240 255 4.087892 CACGGGAGAGGCAGGTGG 62.088 72.222 0.00 0.00 0.00 4.61
249 264 3.182341 TCGAAAGAAAAACACGGGAGA 57.818 42.857 0.00 0.00 37.03 3.71
258 273 4.501174 AGCGCGTGCATCGAAAGAAAAA 62.501 45.455 24.79 0.00 46.23 1.94
262 277 2.432456 AGCGCGTGCATCGAAAGA 60.432 55.556 24.79 0.00 46.23 2.52
279 294 2.217429 TGAATGCGACGCTATAAGCA 57.783 45.000 22.08 7.73 42.58 3.91
285 300 0.318360 CCGGTATGAATGCGACGCTA 60.318 55.000 22.08 7.92 0.00 4.26
286 301 1.591594 CCGGTATGAATGCGACGCT 60.592 57.895 22.08 0.22 0.00 5.07
290 305 2.110213 GGGCCGGTATGAATGCGA 59.890 61.111 1.90 0.00 0.00 5.10
378 397 4.742201 GGCTGCCGAGAAGTCGCA 62.742 66.667 1.35 0.00 45.41 5.10
471 490 2.013563 GCAATGAGGACCATGCGAAGA 61.014 52.381 0.00 0.00 35.24 2.87
489 508 1.465387 CACGTGGTTTAAATAGCCGCA 59.535 47.619 7.95 0.00 33.35 5.69
518 537 0.107017 GCAGGGGTGCATCTATGTGT 60.107 55.000 0.00 0.00 34.41 3.72
523 542 1.925285 CTTGGGCAGGGGTGCATCTA 61.925 60.000 0.00 0.00 36.33 1.98
580 608 3.711782 AAGAGGGGGAGGGAGGGG 61.712 72.222 0.00 0.00 0.00 4.79
588 618 0.112412 GCTTTGGTTGAAGAGGGGGA 59.888 55.000 0.00 0.00 0.00 4.81
589 619 0.113190 AGCTTTGGTTGAAGAGGGGG 59.887 55.000 0.00 0.00 0.00 5.40
599 629 1.005867 CATTGCCGCAGCTTTGGTT 60.006 52.632 3.07 0.00 40.80 3.67
658 688 7.270757 AGTGTGTGTATGCATTACTCAAAAA 57.729 32.000 3.54 0.00 36.39 1.94
659 689 6.875948 AGTGTGTGTATGCATTACTCAAAA 57.124 33.333 3.54 0.00 36.39 2.44
660 690 7.382898 TCTAGTGTGTGTATGCATTACTCAAA 58.617 34.615 3.54 1.22 36.39 2.69
661 691 6.930731 TCTAGTGTGTGTATGCATTACTCAA 58.069 36.000 3.54 0.00 36.39 3.02
662 692 6.524101 TCTAGTGTGTGTATGCATTACTCA 57.476 37.500 3.54 9.27 33.16 3.41
663 693 7.827819 TTTCTAGTGTGTGTATGCATTACTC 57.172 36.000 3.54 6.70 0.00 2.59
664 694 8.792830 ATTTTCTAGTGTGTGTATGCATTACT 57.207 30.769 3.54 3.35 0.00 2.24
665 695 9.277565 CAATTTTCTAGTGTGTGTATGCATTAC 57.722 33.333 3.54 5.63 0.00 1.89
666 696 9.225436 TCAATTTTCTAGTGTGTGTATGCATTA 57.775 29.630 3.54 0.00 0.00 1.90
667 697 8.023128 GTCAATTTTCTAGTGTGTGTATGCATT 58.977 33.333 3.54 0.00 0.00 3.56
668 698 7.174772 TGTCAATTTTCTAGTGTGTGTATGCAT 59.825 33.333 3.79 3.79 0.00 3.96
669 699 6.484977 TGTCAATTTTCTAGTGTGTGTATGCA 59.515 34.615 0.00 0.00 0.00 3.96
670 700 6.898041 TGTCAATTTTCTAGTGTGTGTATGC 58.102 36.000 0.00 0.00 0.00 3.14
671 701 8.506437 ACATGTCAATTTTCTAGTGTGTGTATG 58.494 33.333 0.00 0.00 0.00 2.39
672 702 8.621532 ACATGTCAATTTTCTAGTGTGTGTAT 57.378 30.769 0.00 0.00 0.00 2.29
673 703 7.931407 AGACATGTCAATTTTCTAGTGTGTGTA 59.069 33.333 27.02 0.00 0.00 2.90
674 704 6.767902 AGACATGTCAATTTTCTAGTGTGTGT 59.232 34.615 27.02 0.00 0.00 3.72
675 705 7.041848 TCAGACATGTCAATTTTCTAGTGTGTG 60.042 37.037 27.02 10.80 32.80 3.82
676 706 6.992123 TCAGACATGTCAATTTTCTAGTGTGT 59.008 34.615 27.02 0.00 0.00 3.72
677 707 7.041848 TGTCAGACATGTCAATTTTCTAGTGTG 60.042 37.037 27.02 11.82 0.00 3.82
678 708 6.992123 TGTCAGACATGTCAATTTTCTAGTGT 59.008 34.615 27.02 0.00 0.00 3.55
679 709 7.425577 TGTCAGACATGTCAATTTTCTAGTG 57.574 36.000 27.02 12.50 0.00 2.74
694 724 7.764901 GCATGTATCTATGATCATGTCAGACAT 59.235 37.037 18.72 10.53 40.92 3.06
695 725 7.095270 GCATGTATCTATGATCATGTCAGACA 58.905 38.462 18.72 14.15 40.92 3.41
696 726 7.063191 GTGCATGTATCTATGATCATGTCAGAC 59.937 40.741 18.72 9.32 40.92 3.51
697 727 7.095270 GTGCATGTATCTATGATCATGTCAGA 58.905 38.462 18.72 13.22 40.92 3.27
698 728 6.872020 TGTGCATGTATCTATGATCATGTCAG 59.128 38.462 18.72 8.00 40.92 3.51
699 729 6.647895 GTGTGCATGTATCTATGATCATGTCA 59.352 38.462 18.72 9.81 42.06 3.58
700 730 6.647895 TGTGTGCATGTATCTATGATCATGTC 59.352 38.462 18.72 4.79 39.54 3.06
701 731 6.527423 TGTGTGCATGTATCTATGATCATGT 58.473 36.000 18.72 6.86 39.54 3.21
702 732 6.649557 ACTGTGTGCATGTATCTATGATCATG 59.350 38.462 18.72 8.44 40.09 3.07
703 733 6.766429 ACTGTGTGCATGTATCTATGATCAT 58.234 36.000 13.81 13.81 0.00 2.45
704 734 6.165700 ACTGTGTGCATGTATCTATGATCA 57.834 37.500 0.00 0.00 0.00 2.92
705 735 6.810676 CCTACTGTGTGCATGTATCTATGATC 59.189 42.308 0.00 0.00 0.00 2.92
706 736 6.268617 ACCTACTGTGTGCATGTATCTATGAT 59.731 38.462 0.00 0.00 0.00 2.45
707 737 5.598417 ACCTACTGTGTGCATGTATCTATGA 59.402 40.000 0.00 0.00 0.00 2.15
708 738 5.693555 CACCTACTGTGTGCATGTATCTATG 59.306 44.000 0.00 0.00 40.26 2.23
709 739 5.221521 CCACCTACTGTGTGCATGTATCTAT 60.222 44.000 0.00 0.00 43.85 1.98
710 740 4.099419 CCACCTACTGTGTGCATGTATCTA 59.901 45.833 0.00 0.00 43.85 1.98
711 741 3.118629 CCACCTACTGTGTGCATGTATCT 60.119 47.826 0.00 0.00 43.85 1.98
712 742 3.198068 CCACCTACTGTGTGCATGTATC 58.802 50.000 0.00 0.00 43.85 2.24
713 743 2.092968 CCCACCTACTGTGTGCATGTAT 60.093 50.000 0.00 0.00 43.85 2.29
714 744 1.277842 CCCACCTACTGTGTGCATGTA 59.722 52.381 0.00 0.00 43.85 2.29
715 745 0.036732 CCCACCTACTGTGTGCATGT 59.963 55.000 0.00 0.00 43.85 3.21
716 746 0.324614 TCCCACCTACTGTGTGCATG 59.675 55.000 0.00 0.00 43.85 4.06
717 747 0.615331 CTCCCACCTACTGTGTGCAT 59.385 55.000 0.00 0.00 43.85 3.96
718 748 2.057830 CTCCCACCTACTGTGTGCA 58.942 57.895 0.00 0.00 43.85 4.57
719 749 1.376037 GCTCCCACCTACTGTGTGC 60.376 63.158 0.00 0.00 43.85 4.57
720 750 0.687354 AAGCTCCCACCTACTGTGTG 59.313 55.000 0.00 0.00 43.85 3.82
721 751 1.435256 AAAGCTCCCACCTACTGTGT 58.565 50.000 0.00 0.00 43.85 3.72
722 752 2.568623 AAAAGCTCCCACCTACTGTG 57.431 50.000 0.00 0.00 45.01 3.66
756 786 1.730612 GTACACTTAAGGCCTGTTCGC 59.269 52.381 5.69 0.00 0.00 4.70
767 797 4.500127 CCGGTCATCATGTGTACACTTAA 58.500 43.478 25.60 7.39 0.00 1.85
795 825 2.187946 CTTCGTGGCCCAGGCTAG 59.812 66.667 8.89 0.61 41.60 3.42
814 844 3.133767 TATCGGGCGCCAGTTCGAG 62.134 63.158 30.85 9.80 35.07 4.04
823 853 2.084681 CCGTATTCGTATCGGGCGC 61.085 63.158 0.00 0.00 40.49 6.53
934 976 2.034221 GTGGGTGTGAGCTTCCCC 59.966 66.667 12.45 8.72 40.41 4.81
936 978 2.358737 CCGTGGGTGTGAGCTTCC 60.359 66.667 0.00 0.00 0.00 3.46
937 979 1.227853 AACCGTGGGTGTGAGCTTC 60.228 57.895 0.00 0.00 35.34 3.86
938 980 1.227853 GAACCGTGGGTGTGAGCTT 60.228 57.895 0.00 0.00 35.34 3.74
952 994 4.772687 GGGAACGGCCGAGGAACC 62.773 72.222 35.90 24.00 37.63 3.62
1076 1124 2.107141 GGATGGAGAAGCGTCGGG 59.893 66.667 0.00 0.00 0.00 5.14
1079 1127 2.956964 CGCGGATGGAGAAGCGTC 60.957 66.667 0.00 0.00 46.48 5.19
1305 1365 4.285149 CTTGGCATACGCGAGCGC 62.285 66.667 15.93 11.77 44.19 5.92
1306 1366 3.630148 CCTTGGCATACGCGAGCG 61.630 66.667 15.93 16.38 46.03 5.03
1307 1367 2.511600 ACCTTGGCATACGCGAGC 60.512 61.111 15.93 14.04 39.92 5.03
1308 1368 1.148157 CTGACCTTGGCATACGCGAG 61.148 60.000 15.93 2.87 39.92 5.03
1309 1369 1.153647 CTGACCTTGGCATACGCGA 60.154 57.895 15.93 0.00 39.92 5.87
1310 1370 2.813179 GCTGACCTTGGCATACGCG 61.813 63.158 3.53 3.53 39.92 6.01
1311 1371 1.026718 AAGCTGACCTTGGCATACGC 61.027 55.000 0.00 0.00 30.99 4.42
1312 1372 0.729116 CAAGCTGACCTTGGCATACG 59.271 55.000 0.00 0.00 45.78 3.06
1320 1380 1.684248 GGATGCATCCAAGCTGACCTT 60.684 52.381 35.93 0.00 46.38 3.50
1341 1401 4.088634 CCAAAATCAATCAGAACCCTGGA 58.911 43.478 0.00 0.00 40.76 3.86
1343 1403 5.473039 GAACCAAAATCAATCAGAACCCTG 58.527 41.667 0.00 0.00 41.74 4.45
1459 1519 3.775654 GCGAGGTCCTCCCACAGG 61.776 72.222 13.54 0.00 45.15 4.00
1513 1573 2.765807 ATCCACCCCAGGCTCTCG 60.766 66.667 0.00 0.00 0.00 4.04
1522 1582 1.580059 TACCTGTCTTCATCCACCCC 58.420 55.000 0.00 0.00 0.00 4.95
1561 1621 5.158101 TCGATCAGAGTCAACGACTTATC 57.842 43.478 0.00 2.53 43.53 1.75
1601 1662 5.845734 TGACTAGTATTTGAGGGGGTAGAA 58.154 41.667 0.00 0.00 0.00 2.10
1602 1663 5.043582 ACTGACTAGTATTTGAGGGGGTAGA 60.044 44.000 0.00 0.00 34.74 2.59
1603 1664 5.069251 CACTGACTAGTATTTGAGGGGGTAG 59.931 48.000 0.00 0.00 34.74 3.18
1604 1665 4.960469 CACTGACTAGTATTTGAGGGGGTA 59.040 45.833 0.00 0.00 34.74 3.69
1605 1666 3.775316 CACTGACTAGTATTTGAGGGGGT 59.225 47.826 0.00 0.00 34.74 4.95
1617 1678 7.176490 AGTCTGTAGTTATTCCACTGACTAGT 58.824 38.462 10.53 0.00 44.57 2.57
1618 1679 7.633193 AGTCTGTAGTTATTCCACTGACTAG 57.367 40.000 10.53 0.00 44.57 2.57
1619 1680 8.105197 TGTAGTCTGTAGTTATTCCACTGACTA 58.895 37.037 13.37 13.37 44.57 2.59
1620 1681 6.946583 TGTAGTCTGTAGTTATTCCACTGACT 59.053 38.462 14.90 14.90 46.57 3.41
1621 1682 7.094291 ACTGTAGTCTGTAGTTATTCCACTGAC 60.094 40.741 0.00 0.00 39.83 3.51
1622 1683 6.946583 ACTGTAGTCTGTAGTTATTCCACTGA 59.053 38.462 0.00 0.00 0.00 3.41
1623 1684 7.159322 ACTGTAGTCTGTAGTTATTCCACTG 57.841 40.000 0.00 0.00 0.00 3.66
1624 1685 7.067251 GCTACTGTAGTCTGTAGTTATTCCACT 59.933 40.741 15.71 0.00 43.37 4.00
1625 1686 7.148120 TGCTACTGTAGTCTGTAGTTATTCCAC 60.148 40.741 15.71 0.00 43.37 4.02
1626 1687 6.888088 TGCTACTGTAGTCTGTAGTTATTCCA 59.112 38.462 15.71 0.00 43.37 3.53
1627 1688 7.067251 ACTGCTACTGTAGTCTGTAGTTATTCC 59.933 40.741 15.71 0.00 43.37 3.01
1628 1689 7.987649 ACTGCTACTGTAGTCTGTAGTTATTC 58.012 38.462 15.71 0.00 43.37 1.75
1629 1690 7.941431 ACTGCTACTGTAGTCTGTAGTTATT 57.059 36.000 15.71 0.00 43.37 1.40
1632 1693 9.629878 AATATACTGCTACTGTAGTCTGTAGTT 57.370 33.333 15.71 14.83 43.37 2.24
1633 1694 9.629878 AAATATACTGCTACTGTAGTCTGTAGT 57.370 33.333 15.71 13.44 43.37 2.73
1676 1761 3.006247 GAGGAGATGCAGTTGACCTTTC 58.994 50.000 0.00 0.00 0.00 2.62
1683 1768 1.406614 GGACCAGAGGAGATGCAGTTG 60.407 57.143 0.00 0.00 0.00 3.16
1686 1771 0.464870 CTGGACCAGAGGAGATGCAG 59.535 60.000 17.22 0.00 32.44 4.41
1731 1824 0.971447 GTCGGAGTCCAAGGTAGCCT 60.971 60.000 10.49 0.00 33.87 4.58
1732 1825 1.516423 GTCGGAGTCCAAGGTAGCC 59.484 63.158 10.49 0.00 0.00 3.93
1733 1826 0.971447 AGGTCGGAGTCCAAGGTAGC 60.971 60.000 10.49 0.00 38.46 3.58
1734 1827 1.558233 AAGGTCGGAGTCCAAGGTAG 58.442 55.000 10.49 0.00 38.46 3.18
1735 1828 1.897802 GAAAGGTCGGAGTCCAAGGTA 59.102 52.381 10.49 0.00 38.46 3.08
1736 1829 0.685660 GAAAGGTCGGAGTCCAAGGT 59.314 55.000 10.49 0.00 38.46 3.50
1737 1830 0.977395 AGAAAGGTCGGAGTCCAAGG 59.023 55.000 10.49 0.00 38.46 3.61
1738 1831 1.618837 TCAGAAAGGTCGGAGTCCAAG 59.381 52.381 10.49 0.00 38.46 3.61
1782 1877 7.857389 CGAAGAAGTGAGTCATTTCAATTTCAA 59.143 33.333 25.02 0.00 35.72 2.69
1783 1878 7.226523 TCGAAGAAGTGAGTCATTTCAATTTCA 59.773 33.333 25.02 11.38 35.72 2.69
1784 1879 7.576236 TCGAAGAAGTGAGTCATTTCAATTTC 58.424 34.615 25.02 19.01 35.72 2.17
1785 1880 7.496529 TCGAAGAAGTGAGTCATTTCAATTT 57.503 32.000 25.02 13.85 35.72 1.82
1786 1881 7.388776 TCATCGAAGAAGTGAGTCATTTCAATT 59.611 33.333 25.02 14.45 43.58 2.32
1787 1882 6.875726 TCATCGAAGAAGTGAGTCATTTCAAT 59.124 34.615 25.02 15.78 43.58 2.57
1795 1890 4.489810 ACATGTCATCGAAGAAGTGAGTC 58.510 43.478 9.61 0.00 43.58 3.36
1799 1894 6.034363 CAGTAAGACATGTCATCGAAGAAGTG 59.966 42.308 27.02 8.83 43.58 3.16
1812 1907 9.049523 CATATAGTGAAATGCAGTAAGACATGT 57.950 33.333 0.00 0.00 36.08 3.21
1890 1986 5.105392 TCCTTCACAAAACAAGCATTTCACT 60.105 36.000 0.00 0.00 0.00 3.41
1909 2005 7.148222 GGTTCTTCCAACTAATAAGCTTCCTTC 60.148 40.741 0.00 0.00 35.97 3.46
2049 2145 0.113972 TGGCACCACCATCATTTCCA 59.886 50.000 0.00 0.00 46.36 3.53
2184 2280 9.403110 GAGAAAATGTTAACAGTTAGAGACGTA 57.597 33.333 20.46 0.00 32.55 3.57
2340 2436 2.461300 TCCAGTAGCCTGATAGCTGT 57.539 50.000 0.00 0.00 44.67 4.40
2428 2524 5.067674 TGGAAATGGCTTCGGAATAAATGAG 59.932 40.000 0.00 0.00 34.56 2.90
2438 2534 3.019564 AGAAGAATGGAAATGGCTTCGG 58.980 45.455 0.00 0.00 39.79 4.30
2469 2565 8.579850 TGATCTGCATAAAGTAAAAGGAACAT 57.420 30.769 0.00 0.00 0.00 2.71
2474 2570 6.825721 ACCTCTGATCTGCATAAAGTAAAAGG 59.174 38.462 0.00 0.00 0.00 3.11
2606 2702 5.677319 TCCAGTGTAGAATTTGGTCCTAG 57.323 43.478 0.00 0.00 32.51 3.02
2885 3357 4.397103 TGCTCATCTTCATTGGATGTTGAC 59.603 41.667 0.00 0.00 40.76 3.18
2898 3370 1.930100 CGGCGTCATGCTCATCTTC 59.070 57.895 0.00 0.00 45.43 2.87
2987 3459 5.538118 CAAAAGGTGGAACAAAGGGATAAC 58.462 41.667 0.00 0.00 44.16 1.89
3123 3596 6.176975 TCACATTTTCTAACATAGTTGGCG 57.823 37.500 0.00 0.00 0.00 5.69
3272 3747 8.421002 TCCTCGTCAATATCAAGATGAACATTA 58.579 33.333 0.00 0.00 30.06 1.90
3293 3768 5.392380 CCCAATTCTGATTTCTTTGTCCTCG 60.392 44.000 0.00 0.00 0.00 4.63
3323 3798 1.064685 CAAAGGGCCTTACTGTAGGGG 60.065 57.143 21.25 10.43 35.74 4.79
3377 3852 7.741198 GCAAAGCTAATAACATTGCATTGAAA 58.259 30.769 15.20 3.29 44.29 2.69
3569 4044 7.688578 GCTTACAAAAATACTAAGCACGAAGAG 59.311 37.037 0.00 0.00 41.32 2.85
3574 4049 6.599437 ACTGCTTACAAAAATACTAAGCACG 58.401 36.000 7.14 6.80 44.66 5.34
3600 4075 4.848562 AGCATGGAAATGTCATATGCTG 57.151 40.909 20.13 0.62 46.19 4.41
3631 4106 2.097142 GCTATCTTTGCTGCAACTCCTG 59.903 50.000 15.72 7.00 0.00 3.86
3799 4277 7.812191 GCTGACATATGGTTTACTCTATCTCAG 59.188 40.741 7.80 7.13 0.00 3.35
3827 4305 0.919981 CAAAAAGAAAGCAACGCGCA 59.080 45.000 5.73 0.00 46.13 6.09
4034 4512 4.524802 AGATGGGTTCAGAATGCCAATA 57.475 40.909 0.00 0.00 34.76 1.90
4035 4513 3.393426 AGATGGGTTCAGAATGCCAAT 57.607 42.857 0.00 0.00 34.76 3.16
4036 4514 2.905415 AGATGGGTTCAGAATGCCAA 57.095 45.000 0.00 0.00 34.76 4.52
4037 4515 2.092429 GGTAGATGGGTTCAGAATGCCA 60.092 50.000 0.00 0.00 34.76 4.92
4038 4516 2.173569 AGGTAGATGGGTTCAGAATGCC 59.826 50.000 0.00 0.00 34.76 4.40
4039 4517 3.567478 AGGTAGATGGGTTCAGAATGC 57.433 47.619 0.00 0.00 34.76 3.56
4040 4518 5.614324 TGTAGGTAGATGGGTTCAGAATG 57.386 43.478 0.00 0.00 37.54 2.67
4041 4519 5.726793 ACTTGTAGGTAGATGGGTTCAGAAT 59.273 40.000 0.00 0.00 0.00 2.40
4042 4520 5.091552 ACTTGTAGGTAGATGGGTTCAGAA 58.908 41.667 0.00 0.00 0.00 3.02
4043 4521 4.684724 ACTTGTAGGTAGATGGGTTCAGA 58.315 43.478 0.00 0.00 0.00 3.27
4044 4522 5.452077 GCTACTTGTAGGTAGATGGGTTCAG 60.452 48.000 9.49 0.00 40.98 3.02
4045 4523 4.404715 GCTACTTGTAGGTAGATGGGTTCA 59.595 45.833 9.49 0.00 40.98 3.18
4046 4524 4.650131 AGCTACTTGTAGGTAGATGGGTTC 59.350 45.833 10.32 0.00 40.98 3.62
4047 4525 4.621769 AGCTACTTGTAGGTAGATGGGTT 58.378 43.478 10.32 0.00 40.98 4.11
4048 4526 4.216708 GAGCTACTTGTAGGTAGATGGGT 58.783 47.826 11.76 0.00 40.98 4.51
4049 4527 4.215908 TGAGCTACTTGTAGGTAGATGGG 58.784 47.826 11.76 0.00 40.98 4.00
4050 4528 5.854010 TTGAGCTACTTGTAGGTAGATGG 57.146 43.478 11.76 0.00 40.98 3.51
4051 4529 7.097192 TGTTTTGAGCTACTTGTAGGTAGATG 58.903 38.462 11.76 0.00 40.98 2.90
4052 4530 7.241042 TGTTTTGAGCTACTTGTAGGTAGAT 57.759 36.000 11.76 0.00 40.98 1.98
4053 4531 6.659745 TGTTTTGAGCTACTTGTAGGTAGA 57.340 37.500 11.76 2.53 40.98 2.59
4054 4532 7.387948 ACAATGTTTTGAGCTACTTGTAGGTAG 59.612 37.037 11.76 0.00 38.22 3.18
4055 4533 7.221450 ACAATGTTTTGAGCTACTTGTAGGTA 58.779 34.615 11.76 0.00 36.64 3.08
4056 4534 6.062095 ACAATGTTTTGAGCTACTTGTAGGT 58.938 36.000 11.64 11.64 36.64 3.08
4057 4535 6.560253 ACAATGTTTTGAGCTACTTGTAGG 57.440 37.500 9.49 0.00 36.64 3.18
4058 4536 7.587757 GTCAACAATGTTTTGAGCTACTTGTAG 59.412 37.037 0.00 3.60 33.63 2.74
4194 4681 8.608185 ATCCCAACCATTAAGAATGTGTAAAT 57.392 30.769 0.00 0.00 37.18 1.40
4279 4766 5.493809 ACCTAGCGCCTGAAGTAAAATTAA 58.506 37.500 2.29 0.00 0.00 1.40
4280 4767 5.093849 ACCTAGCGCCTGAAGTAAAATTA 57.906 39.130 2.29 0.00 0.00 1.40
4282 4769 3.629142 ACCTAGCGCCTGAAGTAAAAT 57.371 42.857 2.29 0.00 0.00 1.82
4320 4807 4.823989 CCAGGGTCACCAAGAATCATATTC 59.176 45.833 0.00 0.00 40.13 1.75
4321 4808 4.478317 TCCAGGGTCACCAAGAATCATATT 59.522 41.667 0.00 0.00 40.13 1.28
4397 4884 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
4399 4886 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
4400 4887 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
4401 4888 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
4402 4889 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
4403 4890 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
4404 4891 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
4446 4933 5.501897 CGTCCCACAATATAAGAGCGTTTTC 60.502 44.000 0.00 0.00 0.00 2.29
4447 4934 4.331717 CGTCCCACAATATAAGAGCGTTTT 59.668 41.667 0.00 0.00 0.00 2.43
4448 4935 3.869246 CGTCCCACAATATAAGAGCGTTT 59.131 43.478 0.00 0.00 0.00 3.60
4449 4936 3.454375 CGTCCCACAATATAAGAGCGTT 58.546 45.455 0.00 0.00 0.00 4.84
4450 4937 2.223971 CCGTCCCACAATATAAGAGCGT 60.224 50.000 0.00 0.00 0.00 5.07
4451 4938 2.035449 TCCGTCCCACAATATAAGAGCG 59.965 50.000 0.00 0.00 0.00 5.03
4452 4939 3.555168 CCTCCGTCCCACAATATAAGAGC 60.555 52.174 0.00 0.00 0.00 4.09
4453 4940 3.006967 CCCTCCGTCCCACAATATAAGAG 59.993 52.174 0.00 0.00 0.00 2.85
4454 4941 2.969950 CCCTCCGTCCCACAATATAAGA 59.030 50.000 0.00 0.00 0.00 2.10
4455 4942 2.969950 TCCCTCCGTCCCACAATATAAG 59.030 50.000 0.00 0.00 0.00 1.73
4456 4943 2.969950 CTCCCTCCGTCCCACAATATAA 59.030 50.000 0.00 0.00 0.00 0.98
4457 4944 2.090943 ACTCCCTCCGTCCCACAATATA 60.091 50.000 0.00 0.00 0.00 0.86
4458 4945 1.344087 ACTCCCTCCGTCCCACAATAT 60.344 52.381 0.00 0.00 0.00 1.28
4459 4946 0.042131 ACTCCCTCCGTCCCACAATA 59.958 55.000 0.00 0.00 0.00 1.90
4460 4947 0.042131 TACTCCCTCCGTCCCACAAT 59.958 55.000 0.00 0.00 0.00 2.71
4461 4948 0.178926 TTACTCCCTCCGTCCCACAA 60.179 55.000 0.00 0.00 0.00 3.33
4462 4949 0.042131 ATTACTCCCTCCGTCCCACA 59.958 55.000 0.00 0.00 0.00 4.17
4463 4950 2.077687 TATTACTCCCTCCGTCCCAC 57.922 55.000 0.00 0.00 0.00 4.61
4464 4951 2.767960 GTTTATTACTCCCTCCGTCCCA 59.232 50.000 0.00 0.00 0.00 4.37
4465 4952 2.767960 TGTTTATTACTCCCTCCGTCCC 59.232 50.000 0.00 0.00 0.00 4.46
4466 4953 3.431346 GGTGTTTATTACTCCCTCCGTCC 60.431 52.174 0.00 0.00 34.91 4.79
4467 4954 3.196254 TGGTGTTTATTACTCCCTCCGTC 59.804 47.826 0.00 0.00 39.23 4.79
4468 4955 3.175594 TGGTGTTTATTACTCCCTCCGT 58.824 45.455 0.00 0.00 39.23 4.69
4469 4956 3.899052 TGGTGTTTATTACTCCCTCCG 57.101 47.619 0.00 0.00 39.23 4.63
4470 4957 4.079958 ACCATGGTGTTTATTACTCCCTCC 60.080 45.833 18.99 0.00 39.23 4.30
4471 4958 5.112129 ACCATGGTGTTTATTACTCCCTC 57.888 43.478 18.99 0.00 39.23 4.30
4472 4959 6.420638 GTTACCATGGTGTTTATTACTCCCT 58.579 40.000 28.17 0.00 39.23 4.20
4473 4960 5.591472 GGTTACCATGGTGTTTATTACTCCC 59.409 44.000 28.17 6.41 39.23 4.30
4474 4961 6.420638 AGGTTACCATGGTGTTTATTACTCC 58.579 40.000 28.17 10.13 40.18 3.85
4475 4962 9.623000 AATAGGTTACCATGGTGTTTATTACTC 57.377 33.333 28.17 5.06 0.00 2.59
4476 4963 9.984590 AAATAGGTTACCATGGTGTTTATTACT 57.015 29.630 28.17 14.81 0.00 2.24
4478 4965 8.688151 GCAAATAGGTTACCATGGTGTTTATTA 58.312 33.333 28.17 12.01 0.00 0.98
4479 4966 7.552459 GCAAATAGGTTACCATGGTGTTTATT 58.448 34.615 28.17 19.76 0.00 1.40
4480 4967 6.183360 CGCAAATAGGTTACCATGGTGTTTAT 60.183 38.462 28.17 15.55 0.00 1.40
4481 4968 5.124138 CGCAAATAGGTTACCATGGTGTTTA 59.876 40.000 28.17 14.03 0.00 2.01
4482 4969 4.082463 CGCAAATAGGTTACCATGGTGTTT 60.082 41.667 28.17 14.19 0.00 2.83
4483 4970 3.442273 CGCAAATAGGTTACCATGGTGTT 59.558 43.478 28.17 11.96 0.00 3.32
4484 4971 3.013921 CGCAAATAGGTTACCATGGTGT 58.986 45.455 28.17 11.47 0.00 4.16
4485 4972 3.064820 GTCGCAAATAGGTTACCATGGTG 59.935 47.826 28.17 8.25 0.00 4.17
4486 4973 3.054655 AGTCGCAAATAGGTTACCATGGT 60.055 43.478 23.55 23.55 0.00 3.55
4487 4974 3.541632 AGTCGCAAATAGGTTACCATGG 58.458 45.455 11.19 11.19 0.00 3.66
4499 4986 5.450412 CCATACCAGCAATTTAGTCGCAAAT 60.450 40.000 0.00 0.00 0.00 2.32
4551 5223 4.576463 TGGAGAAGTTCAGAAGAAAACTGC 59.424 41.667 5.50 0.00 35.93 4.40
4627 5299 5.703130 GCATCCTTTCCATCCAGTATACTTC 59.297 44.000 1.56 0.00 0.00 3.01
4647 5319 2.533266 CGAATTGCCAAAAGGAGCATC 58.467 47.619 0.00 0.00 39.11 3.91
4838 5513 1.545582 CAGAAAACCCAATGGCATCGT 59.454 47.619 0.00 0.00 33.59 3.73
4844 5519 2.611224 GCAGAAGCAGAAAACCCAATGG 60.611 50.000 0.00 0.00 41.58 3.16
4868 5543 2.003301 GCTCGGATGACAAAGTTCCTC 58.997 52.381 0.00 0.00 0.00 3.71
4901 5576 1.064463 TGGAGGACATCAGGATTTGCC 60.064 52.381 0.00 0.00 0.00 4.52
4935 5618 8.777865 TCAGTAGATGACCTAAAACTCAAATG 57.222 34.615 0.00 0.00 31.12 2.32
5011 5694 5.649831 GCCAAGGAGTTCTATGAAACAAGAT 59.350 40.000 0.00 0.00 0.00 2.40
5019 5702 0.901827 TGCGCCAAGGAGTTCTATGA 59.098 50.000 4.18 0.00 0.00 2.15
5027 5710 2.046507 AGAAGCTGCGCCAAGGAG 60.047 61.111 4.18 0.00 41.69 3.69
5030 5713 1.670406 AGTCAGAAGCTGCGCCAAG 60.670 57.895 4.18 0.00 0.00 3.61
5036 5719 1.155042 CAACCTCAGTCAGAAGCTGC 58.845 55.000 0.00 0.00 34.21 5.25
5043 5726 4.543692 CAAATTTCAGCAACCTCAGTCAG 58.456 43.478 0.00 0.00 0.00 3.51
5068 5769 1.077089 GCTTCTCGGCGGTACTCAAC 61.077 60.000 7.21 0.00 0.00 3.18
5123 5824 4.210120 GTCGCATTAGCTATCAGGAGTTTG 59.790 45.833 0.00 0.00 39.10 2.93
5198 5899 4.764050 TTCCAGTCCAAGAGTACACAAA 57.236 40.909 0.00 0.00 0.00 2.83
5354 6055 7.504924 TGACAAAAGGAAATTACTACACCTG 57.495 36.000 0.00 0.00 0.00 4.00
5398 6099 1.090052 GCTTTCCCCCATCGTTCTCG 61.090 60.000 0.00 0.00 38.55 4.04
5407 6108 1.428718 AAACTACCCGCTTTCCCCCA 61.429 55.000 0.00 0.00 0.00 4.96
5418 6119 2.092323 GGGCACATCTGAAAACTACCC 58.908 52.381 0.00 0.00 0.00 3.69
5423 6124 4.051237 GTGAAAAGGGCACATCTGAAAAC 58.949 43.478 0.00 0.00 36.31 2.43
5429 6130 1.425066 TCCAGTGAAAAGGGCACATCT 59.575 47.619 0.00 0.00 38.70 2.90
5488 6192 3.401683 TGGATTGTTTACCCTAAACCCCA 59.598 43.478 3.10 5.14 45.63 4.96
5533 6329 9.645128 AGACACCATTTATCCATATCAAATGAA 57.355 29.630 7.62 0.00 40.49 2.57
5590 6386 3.503363 TGCTGCTGTATTTCAGGAAAGTG 59.497 43.478 0.00 0.00 43.54 3.16
5597 6393 6.426980 TCACTTAATGCTGCTGTATTTCAG 57.573 37.500 11.83 10.68 46.12 3.02
5601 6397 7.067859 ACATTGATCACTTAATGCTGCTGTATT 59.932 33.333 11.37 11.37 37.71 1.89
5689 6493 0.610232 GCCCAGATGAGCAAGTGGTT 60.610 55.000 0.00 0.00 0.00 3.67
5691 6495 1.751927 GGCCCAGATGAGCAAGTGG 60.752 63.158 0.00 0.00 0.00 4.00
5716 6520 3.718434 TGATGGAGGCTTTAGGTGATGAT 59.282 43.478 0.00 0.00 0.00 2.45
5932 6736 8.784994 TCTAAACGCAATTGAAACCAAGTATTA 58.215 29.630 10.34 0.00 0.00 0.98
5952 6756 4.389077 CCCAATTCTGACACGAGTCTAAAC 59.611 45.833 14.15 0.00 45.20 2.01
5965 6769 6.994496 CACATATCTAGCTTTCCCAATTCTGA 59.006 38.462 0.00 0.00 0.00 3.27
6030 6834 3.568007 AGCAGCGTCATTTTAAAGTGGAA 59.432 39.130 10.44 0.00 0.00 3.53
6032 6836 3.559238 AGCAGCGTCATTTTAAAGTGG 57.441 42.857 10.44 0.00 0.00 4.00
6034 6838 5.941948 AGTTAGCAGCGTCATTTTAAAGT 57.058 34.783 0.00 0.00 0.00 2.66
6035 6839 8.895932 ATAAAGTTAGCAGCGTCATTTTAAAG 57.104 30.769 0.00 0.00 0.00 1.85
6036 6840 9.685828 AAATAAAGTTAGCAGCGTCATTTTAAA 57.314 25.926 0.00 0.00 0.00 1.52
6080 6885 2.709397 CCATTTAGAGGGGTATTCCGGT 59.291 50.000 0.00 0.00 36.01 5.28
6084 6889 7.201705 CGTTTTCTTCCATTTAGAGGGGTATTC 60.202 40.741 0.00 0.00 0.00 1.75
6137 6943 5.534207 TTGTGAGGCATGAAAAGACAAAT 57.466 34.783 0.00 0.00 0.00 2.32
6138 6944 4.998671 TTGTGAGGCATGAAAAGACAAA 57.001 36.364 0.00 0.00 0.00 2.83
6187 6993 2.158957 ACTTCTGAAAACTGACTCCGCA 60.159 45.455 0.00 0.00 0.00 5.69
6190 6996 6.517605 AGTTCTACTTCTGAAAACTGACTCC 58.482 40.000 4.81 0.00 0.00 3.85
6196 7002 7.042658 CGCTACAAAGTTCTACTTCTGAAAACT 60.043 37.037 0.54 0.54 37.47 2.66
6200 7006 5.919141 GTCGCTACAAAGTTCTACTTCTGAA 59.081 40.000 0.00 0.00 37.47 3.02
6204 7010 7.916450 AGATATGTCGCTACAAAGTTCTACTTC 59.084 37.037 0.00 0.00 37.47 3.01
6215 7021 4.982295 CGATTCCAAGATATGTCGCTACAA 59.018 41.667 0.00 0.00 39.58 2.41
6223 7029 7.498900 TGCAAAGTATTCGATTCCAAGATATGT 59.501 33.333 0.00 0.00 0.00 2.29
6231 7037 4.439974 GCCATTGCAAAGTATTCGATTCCA 60.440 41.667 1.71 0.00 37.47 3.53
6259 7065 7.447238 ACGAAAAATGTTCTGGGAAATCTAGAA 59.553 33.333 0.00 0.00 0.00 2.10
6269 7075 3.090952 TGCAACGAAAAATGTTCTGGG 57.909 42.857 0.00 0.00 0.00 4.45
6284 7090 3.499918 AGTGAGAGCTGTACAAATGCAAC 59.500 43.478 8.15 2.55 0.00 4.17
6360 7166 6.978659 TCGACGTTTTCATTGCTCTCTTATAT 59.021 34.615 0.00 0.00 0.00 0.86
6530 7336 4.876679 CAGAGGACATCGAGAACTACACTA 59.123 45.833 0.00 0.00 0.00 2.74
6552 7358 1.271102 GTTGCCAAGAATTTACCGCCA 59.729 47.619 0.00 0.00 0.00 5.69
6554 7360 1.198178 TCGTTGCCAAGAATTTACCGC 59.802 47.619 0.00 0.00 0.00 5.68
6604 7410 8.948631 TCTTCCAGTGTGATATATTCTTTGAC 57.051 34.615 0.00 0.00 0.00 3.18
6647 7453 2.594592 GTTGCACAGAACCGGGCT 60.595 61.111 6.32 0.00 0.00 5.19
6657 7463 1.872237 GCACTCGGAGTAAGTTGCACA 60.872 52.381 10.87 0.00 0.00 4.57
6702 7508 2.632377 TCCAGGCTTAAGCAATTCTCG 58.368 47.619 27.83 9.41 44.36 4.04
6733 7539 1.421485 CGAATGTGTCGCTTGGAGC 59.579 57.895 0.00 0.00 44.14 4.70
6773 7579 1.596934 GAACCAGAGCATCCGTGGA 59.403 57.895 0.00 0.00 35.17 4.02
6788 7594 3.831112 AGCGTTAACTTCTCCTACGAAC 58.169 45.455 3.71 0.00 34.36 3.95
6799 7605 4.448060 GCACTGAACTAAGAGCGTTAACTT 59.552 41.667 3.71 0.00 0.00 2.66
6806 7615 3.926527 TGTTATGCACTGAACTAAGAGCG 59.073 43.478 8.84 0.00 36.66 5.03
6830 7639 6.095580 GGAGGTCTAGCGATACATGATGAATA 59.904 42.308 0.00 0.00 0.00 1.75
6835 7644 2.750166 CGGAGGTCTAGCGATACATGAT 59.250 50.000 0.00 0.00 0.00 2.45
6916 7753 6.513066 GCAAACCAAACAAACACAATATGCAT 60.513 34.615 3.79 3.79 0.00 3.96
6944 7781 1.629043 TGGTCTAGTTTCCAGCTCGT 58.371 50.000 0.00 0.00 0.00 4.18
6998 7835 2.298158 ATCCTGCTACCCGCTTGACG 62.298 60.000 0.00 0.00 40.11 4.35
7088 7925 3.250040 CGATAATCCGGGGTGAAATCAAC 59.750 47.826 0.00 0.00 0.00 3.18
7131 7968 3.545124 ATGAACCGGGCGCAGACAA 62.545 57.895 10.83 0.00 37.00 3.18
7151 7988 4.333649 AGTGCTCATGTGATTTTATGTCCG 59.666 41.667 0.00 0.00 0.00 4.79
7178 8015 4.440880 CATTCCTCCTCTCATGACTGAAC 58.559 47.826 0.00 0.00 0.00 3.18
7179 8016 3.453717 CCATTCCTCCTCTCATGACTGAA 59.546 47.826 0.00 0.00 0.00 3.02
7214 8051 2.027285 TCTTCACCTTTCATCGGCATGA 60.027 45.455 0.00 0.00 37.24 3.07
7215 8052 2.358957 TCTTCACCTTTCATCGGCATG 58.641 47.619 0.00 0.00 0.00 4.06
7216 8053 2.787473 TCTTCACCTTTCATCGGCAT 57.213 45.000 0.00 0.00 0.00 4.40
7217 8054 2.559698 TTCTTCACCTTTCATCGGCA 57.440 45.000 0.00 0.00 0.00 5.69
7218 8055 3.074412 TCTTTCTTCACCTTTCATCGGC 58.926 45.455 0.00 0.00 0.00 5.54
7219 8056 4.378874 GCTTCTTTCTTCACCTTTCATCGG 60.379 45.833 0.00 0.00 0.00 4.18
7220 8057 4.214119 TGCTTCTTTCTTCACCTTTCATCG 59.786 41.667 0.00 0.00 0.00 3.84
7221 8058 5.695851 TGCTTCTTTCTTCACCTTTCATC 57.304 39.130 0.00 0.00 0.00 2.92
7223 8060 4.339247 CCTTGCTTCTTTCTTCACCTTTCA 59.661 41.667 0.00 0.00 0.00 2.69
7224 8061 4.580580 TCCTTGCTTCTTTCTTCACCTTTC 59.419 41.667 0.00 0.00 0.00 2.62
7225 8062 4.536765 TCCTTGCTTCTTTCTTCACCTTT 58.463 39.130 0.00 0.00 0.00 3.11
7290 8127 2.515854 GGCGTCATCCTCTACATCCTA 58.484 52.381 0.00 0.00 0.00 2.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.